RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11365
(95 letters)
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 54.0 bits (129), Expect = 2e-11
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
LLV+SSR P+ WIVPGGG+EPEEEP+ A+REV EEAGV G LGR +G+FE + +
Sbjct: 28 LLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKH 84
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p
catalytic domain {Schizosaccharomyces pombe [TaxId:
4896]}
Length = 151
Score = 49.4 bits (117), Expect = 1e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
+LV + W P G ++ +E A+REV EE G
Sbjct: 17 CVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 56
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 49.4 bits (117), Expect = 2e-09
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG 76
LL+ +S HW P G VEP E+ TALR EEAG
Sbjct: 31 FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAG 69
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 45.8 bits (108), Expect = 4e-08
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+LL R W GG V+ E A RE+ EE+G+ +G
Sbjct: 18 VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIV 71
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 43.2 bits (101), Expect = 3e-07
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 38 ILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
ILLV P H W +P G VE E P A+RE EE G+ + + LG + R
Sbjct: 26 ILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR 85
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 42.3 bits (99), Expect = 5e-07
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
+LL+ R W+ P G EP E A+REV EE GV ++ L
Sbjct: 16 VLLLR--DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTR 65
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 41.7 bits (97), Expect = 1e-06
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
+V + +PGG +E E REV EE G+ ++G LG +
Sbjct: 31 TMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYF 84
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 41.0 bits (95), Expect = 2e-06
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
+L+ +R +I PGG VE E P RE EE G++ + V
Sbjct: 14 VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVE 70
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 41.6 bits (97), Expect = 2e-06
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
L + + W +PGG V+P E+ +AT RE EEA + +
Sbjct: 139 LQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKRE 190
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 40.5 bits (94), Expect = 3e-06
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 38 ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
LLV R P G +EP E REV EE G G++
Sbjct: 16 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC 72
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700,
N-terminal domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 40.6 bits (94), Expect = 5e-06
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGV 77
+LL+ P W +PGG V E + LRE EE GV
Sbjct: 56 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGV 97
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 37.5 bits (86), Expect = 6e-05
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEA 75
I + P+ W +P GG++ E+P A+RE+ EE
Sbjct: 28 IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 37.1 bits (85), Expect = 7e-05
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 28 ITTACVM----STLILLVTSSRRPEH---WIVPGGGVEPEEEPAATALREVAEEAGVLGK 80
+T C++ + +++ + + PGG VE +E A + +RE+ EE G+ +
Sbjct: 9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68
Query: 81 LGRSLGVFE 89
+ +G+
Sbjct: 69 NPQLVGIKN 77
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 36.2 bits (83), Expect = 1e-04
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 45 RRPEHWIVPGGGVEPEEEPA-ATALREVAEEAGV 77
R PGG V+ + RE+ EE G
Sbjct: 50 RFDGRLGFPGGFVDTRDISLEEGLKRELEEELGP 83
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 33.6 bits (76), Expect = 0.001
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 28 ITTACVMSTL------ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLG 79
+ C++ +LL+ + P W + GG V+ +E A R +AE G+
Sbjct: 11 LGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLEN 70
Query: 80 KLGRSLGVFE 89
+G F
Sbjct: 71 VYMEQVGAFG 80
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 158
Score = 30.9 bits (69), Expect = 0.012
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 38 ILLVTSSRRP---EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
+L V R +P G +EP E+P A RE+AE+ G+ G L F
Sbjct: 37 MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYF 90
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 30.7 bits (68), Expect = 0.013
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
LL+ +S P HW P G V+P E+ A+RE EEA +
Sbjct: 19 FLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANI 58
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 29.1 bits (64), Expect = 0.055
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGV 77
LL + RP +W VPGG V+ +E A R E G+
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGL 73
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 27.9 bits (61), Expect = 0.13
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 47 PEHWIVPGGGVEPEEEPAATALREVAEEA 75
PGG ++ E P ALRE EE
Sbjct: 60 KGQIAFPGGSLDAGETPTQAALREAQEEV 88
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 25.0 bits (54), Expect = 1.6
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 46 RPEHWIVPGGGVEPEEEPAATALREVAEEA 75
P + G +E E A RE EEA
Sbjct: 88 TPWLLEMVAGMIEEGESVEDVARREAIEEA 117
>d1igra1 c.10.2.5 (A:1-149) Type 1 insulin-like growth factor
receptor extracellular domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 24.0 bits (52), Expect = 2.6
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 8 HNHGLCHVDSV 18
N LC++ +V
Sbjct: 115 KNADLCYLSTV 125
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR
{Staphylococcus aureus [TaxId: 1280]}
Length = 71
Score = 23.1 bits (50), Expect = 3.6
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 60 EEEPAATALREVAEEAGV 77
+ AT E+ + +
Sbjct: 16 KNGYNATTTGEIVKLSES 33
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR
{Bacillus cereus [TaxId: 1396]}
Length = 73
Score = 23.1 bits (50), Expect = 3.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 60 EEEPAATALREVAEEAGV 77
E T+++E+A+EA V
Sbjct: 19 ERGYEGTSIQEIAKEAKV 36
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator
PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 70
Score = 23.1 bits (50), Expect = 3.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 60 EEEPAATALREVAEEAGV 77
E AT + + + +G
Sbjct: 15 EHGVDATTIEMIRDRSGA 32
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 79
Score = 22.9 bits (49), Expect = 4.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 60 EEEPAATALREVAEEAGV 77
E+ A T+LR + +AGV
Sbjct: 19 EKGFAETSLRLITSKAGV 36
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator
SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Length = 75
Score = 22.7 bits (49), Expect = 4.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 60 EEEPAATALREVAEEAGV 77
E T +R +A+EAGV
Sbjct: 20 ERGYDRTTMRAIAQEAGV 37
>d2io8a1 c.30.1.7 (A:379-496) Glutathionylspermidine synthase,
synthetase domain {Escherichia coli [TaxId: 562]}
Length = 118
Score = 23.2 bits (50), Expect = 4.7
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 58 EPEEEPAATALREVAEEAGVLGKLGRSL 85
+ EE A + + +AG ++ R L
Sbjct: 11 DIEENYHAQFMEQALHQAGFETRILRGL 38
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB
{Streptomyces coelicolor [TaxId: 1902]}
Length = 71
Score = 22.7 bits (49), Expect = 4.9
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 60 EEEPAATALREVAEEAGV 77
+T L E+ AGV
Sbjct: 20 RRGYESTTLSEIVAHAGV 37
>d1moxa1 c.10.2.5 (A:1-162) EGF receptor extracellular domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 23.3 bits (50), Expect = 5.0
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 8 HNHGLCHVDSV 18
+N LC+V+S+
Sbjct: 128 NNPALCNVESI 138
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator
SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Length = 65
Score = 22.8 bits (49), Expect = 5.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 64 AATALREVAEEAGV 77
AT+LR +AE AGV
Sbjct: 15 DATSLRRIAETAGV 28
>d2dtge4 c.10.2.5 (E:4-156) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 153
Score = 23.4 bits (50), Expect = 6.1
Identities = 3/11 (27%), Positives = 8/11 (72%)
Query: 8 HNHGLCHVDSV 18
N+ LC++ ++
Sbjct: 118 KNNELCYLATI 128
>d1m6ba1 c.10.2.5 (A:8-165) Receptor protein-tyrosine kinase Erbb-3
extracellular domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 158
Score = 23.0 bits (49), Expect = 7.1
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 8 HNHGLCHVDSV 18
N LCH+D++
Sbjct: 125 KNDKLCHMDTI 135
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF
{Bacillus subtilis [TaxId: 1423]}
Length = 73
Score = 22.4 bits (48), Expect = 7.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 60 EEEPAATALREVAEEAGV 77
+ AT L ++ +E+G
Sbjct: 17 LQGYHATGLNQIVKESGA 34
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator
YcdC {Escherichia coli [TaxId: 562]}
Length = 72
Score = 22.3 bits (48), Expect = 7.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 60 EEEPAATALREVAEEAGV 77
+ T L ++AE AGV
Sbjct: 19 QFGFHGTRLEQIAELAGV 36
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator
SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Length = 68
Score = 22.3 bits (48), Expect = 7.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 60 EEEPAATALREVAEEAGV 77
+ A L E+A AGV
Sbjct: 21 ADGFDALDLGEIARRAGV 38
>d3bx1c1 b.42.4.1 (C:1-181) Amylase/subtilisin inhibitor {Barley
(Hordeum vulgare), seed [TaxId: 4513]}
Length = 181
Score = 23.0 bits (49), Expect = 8.3
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEE 62
T C+ ST + + ++ G +P
Sbjct: 86 AYTTCLQSTEWHIDSELAAGRRHVITGPVKDPSPS 120
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163
{Bacillus cereus [TaxId: 1396]}
Length = 69
Score = 22.0 bits (47), Expect = 9.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 60 EEEPAATALREVAEEAGV 77
E A + ++AE A V
Sbjct: 19 ESGFKAVTVDKIAERAKV 36
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 21.8 bits (46), Expect = 9.2
Identities = 5/21 (23%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 2 SYDGPVHNHGLC-HVDSVRRC 21
S+DG + G+C +++++ +
Sbjct: 7 SHDGYCLHDGVCMYIEALDKY 27
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator
SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Length = 68
Score = 22.0 bits (47), Expect = 9.7
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 60 EEEPAATALREVAEEAGV 77
E +R +A+E
Sbjct: 19 AEGLEKVTMRRLAQELDT 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,990
Number of extensions: 13491
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 41
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)