BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11370
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 110/174 (63%), Gaps = 10/174 (5%)
Query: 42 YLIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENYTQVEAIRMLGIMMVIFVR 101
Y + F QELDLSKEA + + +E++W +++ L Y +V+ IR++GIM++++V+
Sbjct: 40 YCVGF-QELDLSKEAFFFHDTPKEEEWFKAVSEGLHP-DAKYAKVKLIRLVGIMLLLYVK 97
Query: 102 DSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNAD 158
+ I+ ++ + + +G +GNKGGVAIRF+ + T IC + SH A+HI E RN D
Sbjct: 98 QEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQD 157
Query: 159 FKNILNQIHFKENDKLIP-----DHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207
+K+I +++ F + D +P +HD+I W GDLNYR ++L + V +LI K+
Sbjct: 158 YKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKD 211
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 110/174 (63%), Gaps = 10/174 (5%)
Query: 42 YLIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENYTQVEAIRMLGIMMVIFVR 101
Y + F QELDLSKEA + + +E++W +++ L Y +V+ IR++GIM++++V+
Sbjct: 37 YCVGF-QELDLSKEAFFFHDTPKEEEWFKAVSEGLHP-DAKYAKVKLIRLVGIMLLLYVK 94
Query: 102 DSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNAD 158
+ I+ ++ + + +G +GNKGGVAIRF+ + T IC + SH A+HI E RN D
Sbjct: 95 QEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQD 154
Query: 159 FKNILNQIHFKENDKLIP-----DHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207
+K+I +++ F + D +P +HD+I W GDLNYR ++L + V +LI K+
Sbjct: 155 YKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKD 208
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 42 YLIPFSQELDLSKEAILYDRSSREKDWLAVITKCLE---TLPENYTQVEAIRMLGIMMVI 98
Y++ F + + L+ + ++ ++ ++W + + + L T Y Q+ + +++G ++I
Sbjct: 58 YVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMI 117
Query: 99 FVRDSFLSQITNID---KDRMSSGDLGNKGGVAIRFELYRTGICFICSHFASHINNVEAR 155
F ++S L I N++ K G GNKG VAIRF+ TG+CFI SH A+ N + R
Sbjct: 118 FCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDER 177
Query: 156 NADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208
+ D++ I + + F+ + +HD + WFGD NYR L+ + V+ I + ++
Sbjct: 178 DHDYRTIASGLRFRRGRSIF-NHDYVVWFGDFNYRIS-LTYEEVVPCIAQGKL 228
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 35/208 (16%)
Query: 32 LVKIFVGTWNY-LIP-------------FSQELDLSKEAILYD--------RSSREKDWL 69
++ +F+GTWN +P + LD I +D S +++WL
Sbjct: 7 MISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWL 66
Query: 70 AVITKCLETLPE-NYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKG 125
++ L+ L + +Y + + I + + V+ ++I+++ + +G LGNKG
Sbjct: 67 DLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKG 126
Query: 126 GVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDL----- 180
V + F T F+ H S RN ++ +IL + D+ + D+
Sbjct: 127 AVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL--GDRQLNAFDISLRFT 184
Query: 181 -IFWFGDLNYRFDKLSRDSVIELINRKE 207
+FWFGDLNYR D + ++ I+RKE
Sbjct: 185 HLFWFGDLNYRLD-MDIQEILNYISRKE 211
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 31 RLVKIFVGTWNY-----LIPFSQELDLSKEAI----LY-----DRSSREKDWLAVITKCL 76
R V +FV TWN L P E L EA LY + S ++W T+
Sbjct: 24 RNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWE---TRLQ 80
Query: 77 ETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSS---GDLGNKGGVAIRFEL 133
ETL +Y + + + M +F+R + + ++ +++ + KG + I F
Sbjct: 81 ETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTF 140
Query: 134 YRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPD--------------HD 179
+ T FI SHF S V R D+ + + N +PD D
Sbjct: 141 FGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRN---VPDTNPYRSSAADVTTRFD 197
Query: 180 LIFWFGDLNYRF 191
+FWFGD N+R
Sbjct: 198 EVFWFGDFNFRL 209
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 120 DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHD 179
D GG+ F +Y F S + +V + N + + K++D D
Sbjct: 111 DQKKSGGIVTSFTIYNKRFSFTTSRMSDE--DVTSTNTKYAYDTRLDYSKKDDP----SD 164
Query: 180 LIFWFGDLNYRFD 192
+FW GDLN R +
Sbjct: 165 FLFWIGDLNVRVE 177
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 145 FASHINNVEARNADFKNILNQIH 167
++S N E R A+FKN++N+IH
Sbjct: 243 YSSDPKNPEKRIAEFKNLINEIH 265
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 145 FASHINNVEARNADFKNILNQIH 167
++S N E R A+FKN++N+IH
Sbjct: 244 YSSDPKNPEKRIAEFKNLINEIH 266
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|E Chain E, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|A Chain A, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|B Chain B, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|K Chain K, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 388
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 166 IHFKENDKLIPDHD----LIFWFGDLNYRFDKLSRDSVIEL 202
IHF E DKLI DH+ ++ FGD + L+ DS+ EL
Sbjct: 167 IHFPELDKLIEDHEEYATIVSRFGDRGF----LTIDSLKEL 203
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5
(135-380)
pdb|3ICX|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Nop5
(135-380)
pdb|3ICX|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5
(135-380)
Length = 255
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 166 IHFKENDKLIPDHD----LIFWFGDLNYRFDKLSRDSVIEL 202
IHF E DKLI DH+ ++ FGD + L+ DS+ EL
Sbjct: 34 IHFPELDKLIEDHEEYATIVSRFGDRGF----LTIDSLKEL 70
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 145 FASHINNVEARNADFKNILNQIH 167
++S N E R A+FKN++N+IH
Sbjct: 550 YSSDPKNPEKRIAEFKNLINEIH 572
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
Length = 268
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 166 IHFKENDKLIPDHD----LIFWFGDLNYRFDKLSRDSVIEL 202
IHF E DKLI DH+ ++ FGD + L+ DS+ EL
Sbjct: 167 IHFPELDKLIEDHEEYATIVSRFGDRGF----LTIDSLKEL 203
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 7 EHIFNNGVITYQPDKSQKLNKSNKRLVKIFVG 38
+ +F NG+ITY S +++ +R+ K ++G
Sbjct: 799 QELFENGLITYHRTDSTRVSDVGQRIAKEYLG 830
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 7 EHIFNNGVITYQPDKSQKLNKSNKRLVKIFVG 38
+ +F NG+ITY S +++ +R+ K ++G
Sbjct: 799 QELFENGLITYHRTDSTRVSDVGQRIAKEYLG 830
>pdb|3EP0|A Chain A, Methyltransferase Domain Of Human Pr Domain-Containing
Protein 12
pdb|3EP0|B Chain B, Methyltransferase Domain Of Human Pr Domain-Containing
Protein 12
Length = 170
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 151 NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191
N + +N + I I +K + + PD +L+ W+G+ + F
Sbjct: 110 NEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSHNTF 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,036,333
Number of Sequences: 62578
Number of extensions: 233061
Number of successful extensions: 565
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 19
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)