Query psy11370
Match_columns 208
No_of_seqs 132 out of 936
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:40:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566|consensus 100.0 3.3E-51 7.1E-56 387.4 15.2 191 14-208 519-743 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 1.1E-42 2.4E-47 321.4 17.7 126 82-208 363-498 (621)
3 smart00128 IPPc Inositol polyp 100.0 1.7E-42 3.8E-47 304.1 17.9 174 32-208 2-211 (310)
4 COG5411 Phosphatidylinositol 5 100.0 1E-33 2.2E-38 252.5 11.0 182 23-207 20-234 (460)
5 KOG0565|consensus 99.9 5.1E-25 1.1E-29 173.5 11.4 125 82-206 2-136 (145)
6 PTZ00312 inositol-1,4,5-tripho 99.5 9.6E-14 2.1E-18 119.6 8.2 72 120-196 64-146 (356)
7 TIGR03395 sphingomy sphingomye 98.9 7.6E-08 1.6E-12 83.8 14.0 106 92-203 89-202 (283)
8 PF03372 Exo_endo_phos: Endonu 98.6 3.8E-07 8.3E-12 73.9 9.9 93 92-192 72-170 (249)
9 KOG2756|consensus 98.5 1.2E-06 2.5E-11 75.4 9.5 62 128-192 196-257 (349)
10 PRK11756 exonuclease III; Prov 98.4 1.7E-06 3.7E-11 74.1 9.8 65 123-192 88-157 (268)
11 PRK05421 hypothetical protein; 98.4 2.4E-06 5.1E-11 73.4 10.3 60 123-190 134-194 (263)
12 PLN03144 Carbon catabolite rep 98.3 1.3E-05 2.9E-10 76.3 14.1 64 136-207 417-480 (606)
13 KOG1976|consensus 98.3 1.1E-06 2.5E-11 76.4 5.1 68 120-192 153-231 (391)
14 COG3568 ElsH Metal-dependent h 98.2 1.3E-05 2.9E-10 68.9 10.8 137 31-188 6-174 (259)
15 smart00476 DNaseIc deoxyribonu 98.1 3.4E-05 7.5E-10 67.1 11.5 138 34-192 17-190 (276)
16 KOG2338|consensus 97.9 7.3E-05 1.6E-09 69.0 8.9 135 43-196 165-310 (495)
17 TIGR00195 exoDNase_III exodeox 97.7 0.00046 9.9E-09 58.5 10.4 51 137-192 98-152 (254)
18 TIGR00633 xth exodeoxyribonucl 97.6 0.00032 6.9E-09 58.9 8.6 52 136-192 100-155 (255)
19 PRK13911 exodeoxyribonuclease 97.3 0.003 6.6E-08 54.1 11.3 56 129-195 92-153 (250)
20 KOG3873|consensus 97.2 0.0022 4.8E-08 57.5 8.6 102 91-197 77-189 (422)
21 PRK15251 cytolethal distending 97.1 0.0041 8.8E-08 54.0 9.4 59 122-192 140-198 (271)
22 PTZ00297 pantothenate kinase; 97.0 0.013 2.8E-07 61.4 14.1 68 120-189 129-206 (1452)
23 COG0708 XthA Exonuclease III [ 96.8 0.013 2.8E-07 50.7 9.6 58 128-195 93-157 (261)
24 COG5239 CCR4 mRNA deadenylase, 81.4 3.7 7.9E-05 37.2 5.6 9 34-42 30-38 (378)
25 PF14529 Exo_endo_phos_2: Endo 76.6 4.6 9.9E-05 29.2 4.1 44 138-192 1-44 (119)
26 COG3021 Uncharacterized protei 76.0 9 0.00019 34.0 6.3 61 120-189 171-233 (309)
27 KOG3870|consensus 66.1 2.4 5.1E-05 38.9 0.5 16 176-191 350-365 (434)
28 cd07393 MPP_DR1119 Deinococcus 34.0 1.8E+02 0.0039 24.0 6.9 31 153-191 25-55 (232)
29 COG2374 Predicted extracellula 31.9 5.5E+02 0.012 25.9 10.4 64 135-205 620-697 (798)
30 COG0217 Uncharacterized conser 30.9 1E+02 0.0022 26.4 4.8 75 68-144 66-145 (241)
31 PF07494 Reg_prop: Two compone 28.9 31 0.00067 18.3 0.9 9 33-41 16-24 (24)
32 cd07423 MPP_PrpE Bacillus subt 28.1 1.4E+02 0.0031 24.7 5.3 47 157-205 14-63 (234)
33 COG3895 Predicted periplasmic 27.3 1.5E+02 0.0033 22.4 4.6 31 120-150 47-77 (112)
34 cd07400 MPP_YydB Bacillus subt 24.1 2E+02 0.0044 21.3 5.0 58 140-204 4-62 (144)
35 COG1908 FrhD Coenzyme F420-red 22.8 2.1E+02 0.0046 22.1 4.8 64 100-170 22-94 (132)
No 1
>KOG0566|consensus
Probab=100.00 E-value=3.3e-51 Score=387.44 Aligned_cols=191 Identities=33% Similarity=0.664 Sum_probs=181.5
Q ss_pred hhhcccccchhccCCCccceeEEEEeeee------------------------------cccccccc-ccchhhhhccCC
Q psy11370 14 VITYQPDKSQKLNKSNKRLVKIFVGTWNY------------------------------LIPFSQEL-DLSKEAILYDRS 62 (208)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~i~v~i~TWNv------------------------------viGl~QEi-dl~~~~~~~~~~ 62 (208)
++..+|.+++ ++|+.+++|+||+||||| |||| ||+ +|+++.++..++
T Consensus 519 yv~~~L~er~-~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~-eEvVeLnag~iv~As~ 596 (1080)
T KOG0566|consen 519 YVLKELRERR-SEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF-EEVVELNAGNIVSAST 596 (1080)
T ss_pred HHHHHHHHhh-hhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee-hhhhhcCccceeccCh
Confidence 3455566666 999999999999999999 9999 998 999999999999
Q ss_pred chhHHHHHHHHHhhccCCCCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEE
Q psy11370 63 SREKDWLAVITKCLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGIC 139 (208)
Q Consensus 63 ~~~~~W~~~i~~~L~~~~~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~ 139 (208)
.+.+.|++.|+++|++..++|+++.+.||+|++|++|+|.++.++|++|+.++++|| +.||||||+|||.+++|+||
T Consensus 597 tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfC 676 (1080)
T KOG0566|consen 597 TKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFC 676 (1080)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEE
Confidence 999999999999999658999999999999999999999999999999999999999 88999999999999999999
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCCC
Q psy11370 140 FICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208 (208)
Q Consensus 140 fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~~ 208 (208)
||++|||||..++++||.||++|.++++|+. +..|.+||+|||||||||||+ |++|||++.|.++||
T Consensus 677 Fv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~-Gr~I~~HD~ifW~GDFNYRI~-l~nEEVr~~v~~~d~ 743 (1080)
T KOG0566|consen 677 FVCSHLAAGQSNVEERNEDYKTIARKLRFPR-GRMIFSHDYIFWLGDFNYRID-LSNEEVRRLVRNQDL 743 (1080)
T ss_pred EEecccccccchHhhhhhhHHHHHHhccccC-CccccCCceEEEecccceeec-CCHHHHHHHHHhccH
Confidence 9999999999999999999999999999998 788999999999999999999 999999999999875
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.1e-42 Score=321.45 Aligned_cols=126 Identities=36% Similarity=0.737 Sum_probs=116.4
Q ss_pred CeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCCCC--CHHHHH
Q psy11370 82 NYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHIN--NVEARN 156 (208)
Q Consensus 82 ~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~--~~~~Rn 156 (208)
+|++|.+.+|+||+|+||+|+++.++|++++++.|+|| .+||||||+|||.+++++||||||||+||++ +.++||
T Consensus 363 ~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN 442 (621)
T PLN03191 363 KYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRN 442 (621)
T ss_pred CEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHH
Confidence 58889999999999999999999999999999999999 7899999999999999999999999999875 478899
Q ss_pred HHHHHHHHHcCCCCC-----CCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCCC
Q psy11370 157 ADFKNILNQIHFKEN-----DKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208 (208)
Q Consensus 157 ~~~~~I~~~~~f~~~-----~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~~ 208 (208)
+||.+|++++.|... +..|.+||++||||||||||+ +++++|+++|+++++
T Consensus 443 ~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId-l~~~ev~~lI~~~~~ 498 (621)
T PLN03191 443 ADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN-MLDTEVRKLVAQKRW 498 (621)
T ss_pred HHHHHHHhccccCcccccCCCccccccceEEEecCcccccc-CCHHHHHHHHhhccH
Confidence 999999999999742 346778999999999999999 999999999998763
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.7e-42 Score=304.14 Aligned_cols=174 Identities=39% Similarity=0.728 Sum_probs=159.5
Q ss_pred ceeEEEEeeee------------------------------cccccccc-ccchhhhhccCCchhHHHHHHHHHhhccCC
Q psy11370 32 LVKIFVGTWNY------------------------------LIPFSQEL-DLSKEAILYDRSSREKDWLAVITKCLETLP 80 (208)
Q Consensus 32 ~i~v~i~TWNv------------------------------viGl~QEi-dl~~~~~~~~~~~~~~~W~~~i~~~L~~~~ 80 (208)
+++|+++|||| |||| ||+ ++.+.+++...+.....|.+.+.++|+ .+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~vigl-QEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~-~~ 79 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGL-QEVVDLENGVLLETIAGKERLWSKLIESSLN-GD 79 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEe-eeecccchhhhhhccchhHHHHHHHHHHhcC-CC
Confidence 68999999999 7999 999 788777777777889999999999997 45
Q ss_pred CCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHH
Q psy11370 81 ENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNA 157 (208)
Q Consensus 81 ~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~ 157 (208)
.+|.++++.+|+|+.|+||+|+++.++|++++++.+++| .+||||||++++.+.++++|||||||+||++++++||+
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~~~~R~~ 159 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASNVEQRNQ 159 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccchhhhhHH
Confidence 899999999999999999999999999999999999999 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCC-CCCCCCCceEEEEcccCCcCCCCCH-HHHHHHHHcCCC
Q psy11370 158 DFKNILNQIHFKEN-DKLIPDHDLIFWFGDLNYRFDKLSR-DSVIELINRKEI 208 (208)
Q Consensus 158 ~~~~I~~~~~f~~~-~~~i~~~d~vfw~GDlNyRi~~l~~-~~v~~~i~~~~~ 208 (208)
||++|++++.|+.+ ...+.++|++|||||||||++ +++ ++++++|+++++
T Consensus 160 ~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~-~~~~~~v~~~i~~~~~ 211 (310)
T smart00128 160 DYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD-SPSYEEVRRKISKKEF 211 (310)
T ss_pred HHHHHHHhcCCCCCccccccccceEEEecCcceeec-CCCHHHHHHHHhhCcH
Confidence 99999999999763 223568999999999999999 776 999999988763
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=252.46 Aligned_cols=182 Identities=33% Similarity=0.574 Sum_probs=168.3
Q ss_pred hhccCCCccceeEEEEeeee--------------------------cccccccc-ccchhhhhccC-CchhHHHHHHHHH
Q psy11370 23 QKLNKSNKRLVKIFVGTWNY--------------------------LIPFSQEL-DLSKEAILYDR-SSREKDWLAVITK 74 (208)
Q Consensus 23 ~~~~~~~~~~i~v~i~TWNv--------------------------viGl~QEi-dl~~~~~~~~~-~~~~~~W~~~i~~ 74 (208)
++++|+..+++++|++|+|. |+|| ||+ .++++.++..+ ..+.+.|++.+-+
T Consensus 20 ~~sk~~~~~~~~~f~~~~n~~~~~~k~~~k~~lfP~~~~~~~~dlyVvGl-QEvv~lt~~sils~~p~~rl~~wes~~~~ 98 (460)
T COG5411 20 RRSKYVIEKDVSIFVSTFNPPGKPPKASTKRWLFPEIEATELADLYVVGL-QEVVELTPGSILSADPYDRLRIWESKVLD 98 (460)
T ss_pred HhhhheeecceeeEeccccCCCCCchhhhhhhcccccccccccceEEecc-ceeeeccchhhccCCcccccchhHHHHHH
Confidence 44899999999999999998 9999 998 78888888777 5566999999999
Q ss_pred hhcc--CCCCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCCC
Q psy11370 75 CLET--LPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHI 149 (208)
Q Consensus 75 ~L~~--~~~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~ 149 (208)
.|+. ..++|.++.+.+|+|+.+.||.+.+.++.++.|..+.-+|| ..+|||+|++++.+..+.+|||+|||+||.
T Consensus 99 ~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~ 178 (460)
T COG5411 99 CLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGV 178 (460)
T ss_pred HhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccc
Confidence 9984 67899999999999999999999999999999999998888 778999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCC
Q psy11370 150 NNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207 (208)
Q Consensus 150 ~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~ 207 (208)
.|.++|+.||+.|...+.|.. +..+.+||++||+|||||||+ +++++++..+...+
T Consensus 179 ~N~eeR~~Dy~~I~~~i~f~~-g~~I~~hdti~w~GDlNyRVt-s~~e~v~~~~~~~~ 234 (460)
T COG5411 179 NNIEERIFDYRSIASNICFSR-GLRIYDHDTIFWLGDLNYRVT-STNEEVRPEIASDD 234 (460)
T ss_pred ccHHHHHHHHHHHHHheecCC-CceecccceEEEecccCceee-cCchhcchhhhCCc
Confidence 999999999999999999987 788999999999999999999 99999988876654
No 5
>KOG0565|consensus
Probab=99.92 E-value=5.1e-25 Score=173.52 Aligned_cols=125 Identities=38% Similarity=0.658 Sum_probs=111.2
Q ss_pred CeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHH-HHH
Q psy11370 82 NYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHINNVEA-RNA 157 (208)
Q Consensus 82 ~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~-Rn~ 157 (208)
.|+.+.+.+++++.+.+|++.++.+++..++.+++++| .+||||+|++++.++++.+||++|||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 68999999999999999999999999999999999999 78999999999999999999999999999999888 999
Q ss_pred HHHHHHHHcCCCCC-----CCCCCC-CceEEEEcccCCcCCCCCHHHHHHHHHcC
Q psy11370 158 DFKNILNQIHFKEN-----DKLIPD-HDLIFWFGDLNYRFDKLSRDSVIELINRK 206 (208)
Q Consensus 158 ~~~~I~~~~~f~~~-----~~~i~~-~d~vfw~GDlNyRi~~l~~~~v~~~i~~~ 206 (208)
++++|.....|... +..+.. +|.|||+||||||+.+.++.++...+.++
T Consensus 82 d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~ 136 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVK 136 (145)
T ss_pred cHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhc
Confidence 99999999999762 222222 79999999999999943377777776654
No 6
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.48 E-value=9.6e-14 Score=119.58 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=61.2
Q ss_pred ccCCCceeEEEEEECCeEEEEEeecCCCCCCCH-----------HHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccC
Q psy11370 120 DLGNKGGVAIRFELYRTGICFICSHFASHINNV-----------EARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLN 188 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~-----------~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlN 188 (208)
.++.||.+.+|+.++++.|+|||+||.+++.|+ ..|.+++..++.++. ..+.++|++||+||||
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~-----~~~~~~~~lF~fGDfN 138 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS-----AFISPSDPLFIFGDFN 138 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh-----hccCCCCcEEEeccce
Confidence 678999999999999999999999999998865 457888899988663 2345789999999999
Q ss_pred CcCCCCCH
Q psy11370 189 YRFDKLSR 196 (208)
Q Consensus 189 yRi~~l~~ 196 (208)
||+++..+
T Consensus 139 yRld~~~~ 146 (356)
T PTZ00312 139 VRLDGHNL 146 (356)
T ss_pred eeeccccH
Confidence 99995444
No 7
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.85 E-value=7.6e-08 Score=83.82 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=70.6
Q ss_pred eeeEEEEEEecCCCCcceeeeeeccccc--ccCCCceeEEEEEECCeEEEEEeecCCCCC------CCHHHHHHHHHHHH
Q psy11370 92 LGIMMVIFVRDSFLSQITNIDKDRMSSG--DLGNKGGVAIRFELYRTGICFICSHFASHI------NNVEARNADFKNIL 163 (208)
Q Consensus 92 ~Gl~l~vfvr~~~~~~I~~v~~~~v~tG--~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~------~~~~~Rn~~~~~I~ 163 (208)
.+-.++|+.|-.+......+-. .++| ...+||.+.+++...+..+.+++.||.+.. .....|..|+.+|.
T Consensus 89 ~~~G~~iLSr~Pi~~~~~~~f~--~~~~~d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~ 166 (283)
T TIGR03395 89 EDGGVAIVSKWPIEEKIQYIFN--KGCGADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQ 166 (283)
T ss_pred cCCEEEEEECCCccccEEEEcc--CCCCCccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHH
Confidence 3445666677544322111111 2344 567999999999999999999999999853 22567999999997
Q ss_pred HHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHH
Q psy11370 164 NQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELI 203 (208)
Q Consensus 164 ~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i 203 (208)
+.+.- ..+...+.+|++||||..-+..++.+....+
T Consensus 167 ~~i~~----~~~~~~~pvIl~GDfN~~~~s~~~~~ml~~l 202 (283)
T TIGR03395 167 DFIDS----KNIPKDETVLIGGDLNVNKGSNEYHDMFKTL 202 (283)
T ss_pred HHHhh----ccCCCCceEEEEeeCCCCCCCHHHHHHHHHh
Confidence 76532 1233456799999999887744444444333
No 8
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.60 E-value=3.8e-07 Score=73.94 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=53.4
Q ss_pred eeeEEEEEEecCCCCcceeeeeeccccc------ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy11370 92 LGIMMVIFVRDSFLSQITNIDKDRMSSG------DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQ 165 (208)
Q Consensus 92 ~Gl~l~vfvr~~~~~~I~~v~~~~v~tG------~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~ 165 (208)
.+..++++.|.++...+.......-+.+ ....++.+.+++. +..|+++++|+++....-+.+...+.+.+..
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~~~~~~~~~~~~~~~ 149 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDERQEQWRELLARIQK 149 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchhhhhhhhhhhhhhhh
Confidence 3577889999876555444443222222 3446666666655 9999999999998544322222233333333
Q ss_pred cCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 166 IHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 166 ~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..-.. ....++++||||.+.+
T Consensus 150 ~~~~~------~~~~~iv~GDfN~~~~ 170 (249)
T PF03372_consen 150 IYADN------PNEPVIVMGDFNSRPD 170 (249)
T ss_dssp HHHTS------SCCEEEEEEE-SS-BS
T ss_pred ccccc------ccceEEEEeecccCCc
Confidence 32111 1127999999999886
No 9
>KOG2756|consensus
Probab=98.46 E-value=1.2e-06 Score=75.42 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=50.0
Q ss_pred EEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 128 AIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 128 ~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
.+-..+.|.++||.|+||.+-.+.-.+|.++|...+.+++-. ..+.+.-.|||-||+|.|-.
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~Ea---Ie~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEA---IESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHH---HHhCCCceEEEcCcccchhh
Confidence 445568899999999999999999999999999887776421 11236678999999999977
No 10
>PRK11756 exonuclease III; Provisional
Probab=98.42 E-value=1.7e-06 Score=74.06 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=42.4
Q ss_pred CCceeEEEEEECCeEEEEEeecCCCCCC-----CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 123 NKGGVAIRFELYRTGICFICSHFASHIN-----NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 123 nKG~V~i~~~~~~~~~~fvn~HL~a~~~-----~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..+.+.+++...+..+.++|+|++.+.. ..+.|.+.+..+...+.- ...+...++++||||.-.+
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~-----~~~~~~pvIl~GDfN~~~~ 157 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLET-----ELSPDNPLLIMGDMNISPT 157 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHH-----HhccCCCEEEEeecccCCC
Confidence 4578888887765569999999987642 233455555555443321 0123457999999997655
No 11
>PRK05421 hypothetical protein; Provisional
Probab=98.41 E-value=2.4e-06 Score=73.45 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=46.4
Q ss_pred CCceeEEEEEE-CCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCc
Q psy11370 123 NKGGVAIRFEL-YRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYR 190 (208)
Q Consensus 123 nKG~V~i~~~~-~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyR 190 (208)
.||++.+.+.+ .+..+.++|+||.+.....+.|..++..|.+.+.- ....++++||||-.
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~~~--------~~~p~Il~GDFN~~ 194 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQIAH--------HSGPVILAGDFNTW 194 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHHHh--------CCCCEEEEcccccC
Confidence 47999999988 56679999999987654567788999888765521 12468999999963
No 12
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=98.32 E-value=1.3e-05 Score=76.32 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=44.1
Q ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCC
Q psy11370 136 TGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~ 207 (208)
..|+++|.||-.+...-..|..|...|++.+.--.. ...-.++++||||.-- ...+.+++.+|.
T Consensus 417 ~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~----~~~~PvIlcGDFNS~P----~S~vy~lLt~G~ 480 (606)
T PLN03144 417 QLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAA----SADIPMLVCGDFNSVP----GSAPHCLLATGK 480 (606)
T ss_pred cEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhh----cCCCceEEeccCCCCC----CChhhhhhhcCC
Confidence 369999999977766667788888887776642110 1123689999999644 466777776654
No 13
>KOG1976|consensus
Probab=98.27 E-value=1.1e-06 Score=76.42 Aligned_cols=68 Identities=26% Similarity=0.446 Sum_probs=57.4
Q ss_pred ccCCCceeEEEEEECCeEEEEEeecCCCCCCC-----------HHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccC
Q psy11370 120 DLGNKGGVAIRFELYRTGICFICSHFASHINN-----------VEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLN 188 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~-----------~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlN 188 (208)
.++.||-...|+.|.+..|.|||.||-....+ ...|.+++..++.++.-. . ...|.+|.+||||
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~----~-~~~~~~fVfGdfN 227 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE----G-LRNDAIFVFGDFN 227 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh----c-cCceEEEEecccc
Confidence 78899999999999999999999999666544 356888998888888532 2 4578999999999
Q ss_pred CcCC
Q psy11370 189 YRFD 192 (208)
Q Consensus 189 yRi~ 192 (208)
||++
T Consensus 228 frLd 231 (391)
T KOG1976|consen 228 FRLD 231 (391)
T ss_pred cccc
Confidence 9999
No 14
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=68.87 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=85.1
Q ss_pred cceeEEEEeeee--------------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhccC----C
Q psy11370 31 RLVKIFVGTWNY--------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETL----P 80 (208)
Q Consensus 31 ~~i~v~i~TWNv--------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~----~ 80 (208)
+..+..+.|||+ ++|+ ||++-... ...+....|...+....... .
T Consensus 6 ~~~~~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~L-QEv~~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T COG3568 6 QQARFKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVAL-QEVDGAFG----RHRDGLLDLPHLLGRLGLAPYWWSG 80 (259)
T ss_pred hcceeEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeee-eccccccc----ccccccchhHHHHHHhcCCccccch
Confidence 345588999999 7999 99974210 01233456666666655421 1
Q ss_pred CCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeecccc-cccCCCceeEEEEEEC-CeEEEEEeecCCCCCCCHHHHHHH
Q psy11370 81 ENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSS-GDLGNKGGVAIRFELY-RTGICFICSHFASHINNVEARNAD 158 (208)
Q Consensus 81 ~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~t-G~~gnKG~V~i~~~~~-~~~~~fvn~HL~a~~~~~~~Rn~~ 158 (208)
..|..+.....-|..++- + -.+..+....+.. +.+--.|++-+.+... +..+-++|+||+-.+ +.|.+|
T Consensus 81 ~~~~a~~~~~~~GnaiLS--~----~pi~~v~~~~lp~~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~---~~R~~Q 151 (259)
T COG3568 81 AAFGAVYGEGQHGNAILS--R----LPIRDVENLALPDPTGLEPRGALLAEIELPGGKPLRVINAHLGLSE---ESRLRQ 151 (259)
T ss_pred hhhhhhcccceeeeEEEe--c----CcccchhhccCCCCCCCCCceeEEEEEEcCCCCEEEEEEEeccccH---HHHHHH
Confidence 112122333333444332 2 2455555555553 2124579999999885 779999999999554 559999
Q ss_pred HHHHHHHcCCCCCCCCCCCCceEEEEcccC
Q psy11370 159 FKNILNQIHFKENDKLIPDHDLIFWFGDLN 188 (208)
Q Consensus 159 ~~~I~~~~~f~~~~~~i~~~d~vfw~GDlN 188 (208)
...+++...+. +...+++|||||
T Consensus 152 ~~~L~~~~~l~-------~~~p~vl~GDFN 174 (259)
T COG3568 152 AAALLALAGLP-------ALNPTVLMGDFN 174 (259)
T ss_pred HHHHHhhccCc-------ccCceEEEccCC
Confidence 99998844332 223899999999
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=98.13 E-value=3.4e-05 Score=67.11 Aligned_cols=138 Identities=15% Similarity=0.206 Sum_probs=77.5
Q ss_pred eEEEEeeee-------------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhcc-CCCCeEEEE
Q psy11370 34 KIFVGTWNY-------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLET-LPENYTQVE 87 (208)
Q Consensus 34 ~v~i~TWNv-------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~-~~~~Y~~v~ 87 (208)
.+.|+|||+ ++|+ ||+--+ .....+.+-+.|+. .+..|..+.
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~~~DIigl-QEV~d~-----------q~~~l~~ll~~Ln~~~~~~Y~~v~ 84 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDIALV-QEVRDS-----------DLSAVPKLMDQLNSDSPNTYSYVS 84 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhccCCEEEE-EEeecc-----------hhHHHHHHHHHHhhcCCCCceEEe
Confidence 578999999 8899 998321 11122333344542 335899988
Q ss_pred eeeeee----eEEEEEEecCCCCcceeeeeec-cccc-ccCCCceeEEEEEECCe---EEEEEeecCCCCCCCHHHHHHH
Q psy11370 88 AIRMLG----IMMVIFVRDSFLSQITNIDKDR-MSSG-DLGNKGGVAIRFELYRT---GICFICSHFASHINNVEARNAD 158 (208)
Q Consensus 88 ~~~l~G----l~l~vfvr~~~~~~I~~v~~~~-v~tG-~~gnKG~V~i~~~~~~~---~~~fvn~HL~a~~~~~~~Rn~~ 158 (208)
+.++++ -...+|-|++....+..-.-.. ...+ ..=..=...++|+...+ .|.++++|+.+.. ..++.+.
T Consensus 85 s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~~--~~~e~~a 162 (276)
T smart00476 85 SEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEA--AVAEIDA 162 (276)
T ss_pred cCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccccccccceEEEEEeCCCCCccEEEEEecCChHH--HHHHHHH
Confidence 776643 5666777776543333211111 1101 11133456677776654 7999999998853 2334434
Q ss_pred HHH-HHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 159 FKN-ILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 159 ~~~-I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
+.+ +..... . ...+-++++||||--.+
T Consensus 163 L~~v~~~~~~----~---~~~~~villGDFNa~~~ 190 (276)
T smart00476 163 LYDVYLDVRQ----K---WGTEDVIFMGDFNAGCS 190 (276)
T ss_pred HHHHHHHHHH----h---hccCCEEEEccCCCCCC
Confidence 222 222211 0 02356899999999765
No 16
>KOG2338|consensus
Probab=97.87 E-value=7.3e-05 Score=69.02 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=78.4
Q ss_pred ccccccccccchhhhhccCCchhHHHHHHHHHhhccCCCCeEEEEeeeeee--eEEEEEEecCCCCccee--eeeecccc
Q psy11370 43 LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENYTQVEAIRMLG--IMMVIFVRDSFLSQITN--IDKDRMSS 118 (208)
Q Consensus 43 viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~~~~Y~~v~~~~l~G--l~l~vfvr~~~~~~I~~--v~~~~v~t 118 (208)
++|| ||++..- ....|...+.. -+|........++ =.++++-++++-..+-+ +.-...+.
T Consensus 165 IlCL-QEVq~d~---------~~~~~~~~~~~------lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~ 228 (495)
T KOG2338|consen 165 VLCL-QEVQEDH---------YPEFWQPLLGK------LGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGS 228 (495)
T ss_pred eeee-hhhhhhh---------hHHHHHHHHhh------cCceEEEEeccCCCCceEEEEEecccceecccchhhcccccc
Confidence 9999 9997421 12344443333 3555544443322 23555556654333332 22233444
Q ss_pred c-cc-CCC-ceeEEEEEECCe---EEEEEeecCCCCCCCHHHHHHHHHHHHHHcC-CCCCCCCCCCCceEEEEcccCCcC
Q psy11370 119 G-DL-GNK-GGVAIRFELYRT---GICFICSHFASHINNVEARNADFKNILNQIH-FKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 119 G-~~-gnK-G~V~i~~~~~~~---~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~-f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
+ .- -|= +.|..+|++.+. .++..|.||--|......|..|...|++.+. +.. ....|=.+|++||||---
T Consensus 229 ~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~~~~---~~~~~~pi~l~GDfNt~p 305 (495)
T KOG2338|consen 229 ALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAELEKMSK---SSKSHWPIFLCGDFNTEP 305 (495)
T ss_pred hhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHHHHHHh---hcccCCCeEEecCCCCCC
Confidence 4 21 222 345555554444 7999999999998888889999999988763 211 111455899999999755
Q ss_pred CCCCH
Q psy11370 192 DKLSR 196 (208)
Q Consensus 192 ~~l~~ 196 (208)
++-++
T Consensus 306 ~~~~y 310 (495)
T KOG2338|consen 306 DSPPY 310 (495)
T ss_pred CCCcc
Confidence 53333
No 17
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=97.68 E-value=0.00046 Score=58.49 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=32.7
Q ss_pred EEEEEeecCCCCCC----CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 137 GICFICSHFASHIN----NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 137 ~~~fvn~HL~a~~~----~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
.+.++|.|++++.. ..+.|.+.+..+.+.+.-. ......++++||||-..+
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~~~-----~~~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLEKL-----VDKDKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHH-----HhcCCcEEEEeecccCCC
Confidence 47899999998422 3455666666664443210 012356999999998776
No 18
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.00032 Score=58.87 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=34.1
Q ss_pred eEEEEEeecCCCCCC----CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 136 TGICFICSHFASHIN----NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~----~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..+.++++|+++... ..+.|.+.+..+.+.+.- .+.....++++||||...+
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~-----~~~~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYEK-----ELDAGKPVIICGDMNVAHT 155 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHHH-----HHhcCCcEEEEeecccCCC
Confidence 368899999988652 345677777666443310 0123468899999998664
No 19
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=97.35 E-value=0.003 Score=54.06 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=35.2
Q ss_pred EEEEECCeEEEEEeecCCCCCCC---HHHH---HHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCC
Q psy11370 129 IRFELYRTGICFICSHFASHINN---VEAR---NADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLS 195 (208)
Q Consensus 129 i~~~~~~~~~~fvn~HL~a~~~~---~~~R---n~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~ 195 (208)
+...+. .+.++|+..+.+... ++.| .+++.+.++.+ .....++|+||||-.-..++
T Consensus 92 I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l---------~~~~~~Ii~GD~Nva~~~~D 153 (250)
T PRK13911 92 ITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKAL---------ELKKPVIVCGDLNVAHNEID 153 (250)
T ss_pred EEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhc---------ccCCCEEEEccccCCCChhh
Confidence 444454 589999999988643 3334 23444554543 12357899999997666443
No 20
>KOG3873|consensus
Probab=97.17 E-value=0.0022 Score=57.50 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=72.9
Q ss_pred eeeeEEEEEEecCCCCcce-----eeeeeccccc-ccCCCceeEEEEEECCeEEEEEeecCCCCC-----CCHHHHHHHH
Q psy11370 91 MLGIMMVIFVRDSFLSQIT-----NIDKDRMSSG-DLGNKGGVAIRFELYRTGICFICSHFASHI-----NNVEARNADF 159 (208)
Q Consensus 91 l~Gl~l~vfvr~~~~~~I~-----~v~~~~v~tG-~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~-----~~~~~Rn~~~ 159 (208)
..|-.|+||.|-......- +-....+--| -.|.||.-.+++.+.+..+.+-|.||-|-- ..+.-|..|-
T Consensus 77 imGaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~HR~~QA 156 (422)
T KOG3873|consen 77 IMGAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLCHRVAQA 156 (422)
T ss_pred cccCceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccccccccCchhhhHHHHHH
Confidence 3488899999986533211 1222334556 789999888899999999999999998842 2466788877
Q ss_pred HHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHH
Q psy11370 160 KNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRD 197 (208)
Q Consensus 160 ~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~ 197 (208)
.++.+-++.. -...|.|+..||||-+-.+++..
T Consensus 157 wdlaqfi~~t-----~q~~~vVI~~GDLN~~P~dl~~~ 189 (422)
T KOG3873|consen 157 WDLAQFIRAT-----RQNADVVILAGDLNMQPQDLGHK 189 (422)
T ss_pred HHHHHHHHHH-----hcCCcEEEEecCCCCCcccccee
Confidence 7775544322 24679999999999998866643
No 21
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=97.09 E-value=0.0041 Score=54.01 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=39.9
Q ss_pred CCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 122 GNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 122 gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..+..+++++ .+ +.|.+.|+.+..+ ..|.+.++.|..-..-+ ..+.-.+++||||=.-+
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~--~da~aiV~~I~~~f~~~------~~~~pw~I~GDFNr~P~ 198 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG--TDAGAIVRAVHNFFRPN------MRHINWMIAGDFNRSPD 198 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC--ccHHHHHHHHHHHHhhc------cCCCCEEEeccCCCCCc
Confidence 4567777775 33 7899999999842 23888888885544201 12367899999995554
No 22
>PTZ00297 pantothenate kinase; Provisional
Probab=97.04 E-value=0.013 Score=61.38 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=43.3
Q ss_pred ccCCCceeEEEEEEC----C-eEEEEEeecCCCCCCCHHHHHHHHHHHHHHcC-----CCCCCCCCCCCceEEEEcccCC
Q psy11370 120 DLGNKGGVAIRFELY----R-TGICFICSHFASHINNVEARNADFKNILNQIH-----FKENDKLIPDHDLIFWFGDLNY 189 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~----~-~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~-----f~~~~~~i~~~d~vfw~GDlNy 189 (208)
...+||.+-+.+.+. + ..+.++|.||.+.... ..|.+|.+++.+-+. +.. .....+...++++||||-
T Consensus 129 ~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~~i~~~i~~~~~-~~~~~~~~PvILaGDFN~ 206 (1452)
T PTZ00297 129 QSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRRFVESVIANVYE-QNNDGAEIPFVIAGDFNI 206 (1452)
T ss_pred cccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHHHHHHhhhhhcc-cccCCCCCCEEEEeeCCC
Confidence 345899999998884 2 5799999999987653 234455555433221 100 112224467999999993
No 23
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.013 Score=50.67 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=34.2
Q ss_pred EEEEEECCeEEEEEeecCCCCCC-C---HHHHHH---HHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCC
Q psy11370 128 AIRFELYRTGICFICSHFASHIN-N---VEARNA---DFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLS 195 (208)
Q Consensus 128 ~i~~~~~~~~~~fvn~HL~a~~~-~---~~~Rn~---~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~ 195 (208)
.+...+.+ +.++|.-++.|.. . +.-|.+ .+..-++++. .....++++||+|=.-+.++
T Consensus 93 ~I~a~~~~--~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~--------~~~~~~vl~GD~NIap~~iD 157 (261)
T COG0708 93 VIEAEFDG--FRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELL--------KKGKPVVLCGDFNIAPEEID 157 (261)
T ss_pred EEEEEECC--EEEEEEEcCCCCCCCCcchHHHHHHHHHHHHHHHHHh--------hcCCCEEEecccccCCchhc
Confidence 34445666 8899999999886 3 222322 2222222221 23367899999997665443
No 24
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=81.37 E-value=3.7 Score=37.19 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=8.5
Q ss_pred eEEEEeeee
Q psy11370 34 KIFVGTWNY 42 (208)
Q Consensus 34 ~v~i~TWNv 42 (208)
++-|.||||
T Consensus 30 ~ftimTYN~ 38 (378)
T COG5239 30 DFTIMTYNV 38 (378)
T ss_pred eeEEEehhh
Confidence 899999999
No 25
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=76.63 E-value=4.6 Score=29.21 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 138 ICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 138 ~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
|.++++..++.. ..+.=.+.+.++++.. ... .++++||||..-.
T Consensus 1 i~i~~vY~pp~~-~~~~~~~~l~~~~~~~---------~~~-~~Ii~GDFN~~~~ 44 (119)
T PF14529_consen 1 ITIISVYAPPSS-EREEFFDQLRQLLKNL---------PPA-PIIIGGDFNAHHP 44 (119)
T ss_dssp EEEEEEE--TTS--CHHHHHHHHHHHHCC---------TTS-SEEEEEE-----G
T ss_pred CEEEEEECCCCc-cHHHHHHHHHHHHHhC---------CCC-CEEEEeECCCCch
Confidence 457888888777 1111122333332211 112 8899999999655
No 26
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.98 E-value=9 Score=34.03 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=39.5
Q ss_pred ccCCCceeEEEEE-ECCeEEEEEeecCCCCC-CCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCC
Q psy11370 120 DLGNKGGVAIRFE-LYRTGICFICSHFASHI-NNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNY 189 (208)
Q Consensus 120 ~~gnKG~V~i~~~-~~~~~~~fvn~HL~a~~-~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNy 189 (208)
.=+-||+.++.-. .+++.+..++.|..--. ..-..| +|..++...+.-- .--+++.||||-
T Consensus 171 ~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~i~~~--------~gpvIlaGDfNa 233 (309)
T COG3021 171 LRLPKSALATAYPLPDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQIAGH--------SGPVILAGDFNA 233 (309)
T ss_pred ccCCccceeEEEEcCCCCEEEEEeeccccccCCccHHH-HHHHHHHHHHHcC--------CCCeEEeecCCC
Confidence 3456777666554 56788999999988322 233344 6666665544311 146799999997
No 27
>KOG3870|consensus
Probab=66.09 E-value=2.4 Score=38.90 Aligned_cols=16 Identities=44% Similarity=0.777 Sum_probs=14.1
Q ss_pred CCCceEEEEcccCCcC
Q psy11370 176 PDHDLIFWFGDLNYRF 191 (208)
Q Consensus 176 ~~~d~vfw~GDlNyRi 191 (208)
..++.||+=||||||=
T Consensus 350 ~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYRK 365 (434)
T ss_pred hhCcEEEEeccccHHH
Confidence 4689999999999993
No 28
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=33.95 E-value=1.8e+02 Score=24.03 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 153 EARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 153 ~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
++|.+.+.+.++++. .+-|.|++.|||-.+-
T Consensus 25 ~~~~~~i~~~~~~~~--------~~~D~viiaGDl~~~~ 55 (232)
T cd07393 25 KNHTEKIKENWDNVV--------APEDIVLIPGDISWAM 55 (232)
T ss_pred HHHHHHHHHHHHhcC--------CCCCEEEEcCCCccCC
Confidence 456677777766653 2569999999997543
No 29
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=31.87 E-value=5.5e+02 Score=25.91 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=35.5
Q ss_pred CeEEEEEeecCCCCCC-------------C-HHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHH
Q psy11370 135 RTGICFICSHFASHIN-------------N-VEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVI 200 (208)
Q Consensus 135 ~~~~~fvn~HL~a~~~-------------~-~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~ 200 (208)
+.+|..|.-||.+... + -..|.++-+.+..-+.-.+ ..-.+ -.++.+||||-=-. ++..
T Consensus 620 ~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~--~~~~d-~~~viLGD~N~y~~----edpI 692 (798)
T COG2374 620 GEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNP--TGKAD-ADIVILGDFNDYAF----EDPI 692 (798)
T ss_pred CcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCc--ccccC-CCEEEEeccchhhh----ccHH
Confidence 4568889999987432 1 3556666666655443211 11112 35678999994332 4444
Q ss_pred HHHHc
Q psy11370 201 ELINR 205 (208)
Q Consensus 201 ~~i~~ 205 (208)
+.+..
T Consensus 693 ~~l~~ 697 (798)
T COG2374 693 QALEG 697 (798)
T ss_pred HHHhh
Confidence 44443
No 30
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=30.88 E-value=1e+02 Score=26.44 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=52.2
Q ss_pred HHHHHHHhhc-cCCCCeEEEEeeee--eeeEEEEEEecCCCCc-ceeeeeeccccc-ccCCCceeEEEEEECCeEEEEEe
Q psy11370 68 WLAVITKCLE-TLPENYTQVEAIRM--LGIMMVIFVRDSFLSQ-ITNIDKDRMSSG-DLGNKGGVAIRFELYRTGICFIC 142 (208)
Q Consensus 68 W~~~i~~~L~-~~~~~Y~~v~~~~l--~Gl~l~vfvr~~~~~~-I~~v~~~~v~tG-~~gnKG~V~i~~~~~~~~~~fvn 142 (208)
-..+|.++.+ ..+..|..+..... +|+.++|.+-.+-..+ +++|++..-+.| .+|.-|+|+.- |...-++.+.
T Consensus 66 IerAI~ka~G~~d~~~~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~m--F~~kGvi~~~ 143 (241)
T COG0217 66 IERAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYM--FDRKGVIVVE 143 (241)
T ss_pred HHHHHHhccCCCCccceEEEEEEeECCCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEE--EeccEEEEEC
Confidence 3344444443 13358998887654 6899999998876665 778888888888 88988977764 4556666665
Q ss_pred ec
Q psy11370 143 SH 144 (208)
Q Consensus 143 ~H 144 (208)
-.
T Consensus 144 ~~ 145 (241)
T COG0217 144 KN 145 (241)
T ss_pred CC
Confidence 44
No 31
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.88 E-value=31 Score=18.33 Aligned_cols=9 Identities=33% Similarity=0.888 Sum_probs=7.4
Q ss_pred eeEEEEeee
Q psy11370 33 VKIFVGTWN 41 (208)
Q Consensus 33 i~v~i~TWN 41 (208)
=++|++|+|
T Consensus 16 G~lWigT~~ 24 (24)
T PF07494_consen 16 GNLWIGTYN 24 (24)
T ss_dssp SCEEEEETS
T ss_pred cCEEEEeCC
Confidence 378999987
No 32
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=28.15 E-value=1.4e+02 Score=24.69 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCCCC---CCCCCceEEEEcccCCcCCCCCHHHHHHHHHc
Q psy11370 157 ADFKNILNQIHFKENDK---LIPDHDLIFWFGDLNYRFDKLSRDSVIELINR 205 (208)
Q Consensus 157 ~~~~~I~~~~~f~~~~~---~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~ 205 (208)
..+..+++++.|..... .-.+.|.++++||+=-| +....++.+++.+
T Consensus 14 ~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr--G~~s~evl~~l~~ 63 (234)
T cd07423 14 DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR--GPDSPEVLRLVMS 63 (234)
T ss_pred HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC--CCCHHHHHHHHHH
Confidence 46777888888763110 01136899999999444 3456777777753
No 33
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=27.27 E-value=1.5e+02 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.8
Q ss_pred ccCCCceeEEEEEECCeEEEEEeecCCCCCC
Q psy11370 120 DLGNKGGVAIRFELYRTGICFICSHFASHIN 150 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~ 150 (208)
..-|+|.+.++|.++++.+.|-|.--++|.+
T Consensus 47 ky~n~gd~sv~~v~Dg~tlv~~nviSaSGAk 77 (112)
T COG3895 47 KYNNAGDISVSFVLDGKTLVLSNVISASGAK 77 (112)
T ss_pred EEecCCCceEEEEecCCEEEEeeeeeccCcc
Confidence 5679999999999999999999988777764
No 34
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=24.06 E-value=2e+02 Score=21.28 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=30.3
Q ss_pred EEeecCCCCCCCHHH-HHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHHH
Q psy11370 140 FICSHFASHINNVEA-RNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELIN 204 (208)
Q Consensus 140 fvn~HL~a~~~~~~~-Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~ 204 (208)
+-..||......... +...+..+...+.- .+.|.|+..||+=+.-..-+++.+.++++
T Consensus 4 isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~-------~~~d~vi~~GDl~~~~~~~~~~~~~~~~~ 62 (144)
T cd07400 4 LSDLHFGPERKPELLALLSLLDRLLAEIKA-------LDPDLVVITGDLTQRGLPEEFEEAREFLD 62 (144)
T ss_pred eCccCCCCCcchhHHHHHHHHHHHHHHHhc-------cCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 345688776543322 22223334333321 24699999999966544113344555444
No 35
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=22.84 E-value=2.1e+02 Score=22.09 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=42.4
Q ss_pred EecCCCCcceeeeeeccccc---------ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy11370 100 VRDSFLSQITNIDKDRMSSG---------DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKE 170 (208)
Q Consensus 100 vr~~~~~~I~~v~~~~v~tG---------~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~ 170 (208)
.|....|.++-|.+-..|.- .-|-.|...+-+.+.+ ||..+|..+.++|.+.+++++..+...+
T Consensus 22 ~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ge-------CHy~~GN~ka~rR~~~lke~l~elgie~ 94 (132)
T COG1908 22 SRMQYPPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGE-------CHYISGNYKAKRRMELLKELLKELGIEP 94 (132)
T ss_pred ccccCCCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccc-------eeeeccchHHHHHHHHHHHHHHHhCCCc
Confidence 44555555555544333221 2344555555555555 8999999999999999999999887654
Done!