Query psy11370
Match_columns 208
No_of_seqs 132 out of 936
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:40:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 1.9E-52 6.7E-57 365.3 19.6 180 27-208 2-212 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 3.4E-47 1.2E-51 332.7 19.4 168 28-208 3-212 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 4.8E-46 1.7E-50 329.9 18.3 193 12-208 5-228 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.2E-42 4.2E-47 309.0 18.1 172 18-205 11-222 (357)
5 2imq_X Salivary nitrophorin; f 100.0 2.1E-34 7.2E-39 248.0 11.4 164 28-207 2-191 (282)
6 3teb_A Endonuclease/exonucleas 99.2 5.6E-10 1.9E-14 91.8 13.5 135 43-192 37-182 (266)
7 4gz1_A Tyrosyl-DNA phosphodies 99.1 8.1E-10 2.8E-14 89.5 13.8 129 33-190 8-162 (256)
8 4fva_A 5'-tyrosyl-DNA phosphod 99.1 2.1E-10 7.3E-15 93.1 9.2 136 31-192 10-171 (256)
9 4f1h_A Tyrosyl-DNA phosphodies 99.1 2.2E-09 7.4E-14 85.6 13.2 63 122-190 94-156 (250)
10 4gew_A 5'-tyrosyl-DNA phosphod 99.1 4.5E-10 1.5E-14 99.2 9.4 138 29-192 114-277 (362)
11 1ako_A Exonuclease III; AP-end 98.8 1.6E-08 5.4E-13 83.1 10.4 66 122-192 87-157 (268)
12 3g6s_A Putative endonuclease/e 98.8 2.6E-08 9E-13 82.4 10.8 111 70-192 53-178 (267)
13 3mpr_A Putative endonuclease/e 98.8 6.8E-08 2.3E-12 81.9 12.3 114 69-192 57-184 (298)
14 3l1w_A Uncharacterized protein 98.7 3.4E-08 1.2E-12 81.1 8.8 103 82-192 57-172 (257)
15 3i41_A Beta-hemolysin; beta to 98.7 1.2E-07 4.1E-12 81.5 11.2 77 120-200 146-228 (317)
16 1zwx_A SMCL, sphingomyelinase- 98.7 5.2E-08 1.8E-12 81.9 8.1 69 120-192 127-201 (301)
17 2ddr_A Sphingomyelin phosphodi 98.6 9.4E-08 3.2E-12 80.3 8.0 68 120-191 127-200 (306)
18 2jc4_A Exodeoxyribonuclease II 98.4 1.9E-06 6.4E-11 70.1 9.7 51 137-192 98-152 (256)
19 3ngq_A CCR4-NOT transcription 98.3 4.5E-06 1.5E-10 74.8 11.9 67 136-206 195-269 (398)
20 1vyb_A ORF2 contains A reverse 98.3 1.2E-05 4E-10 64.5 12.8 79 95-192 73-151 (238)
21 2a40_B Deoxyribonuclease-1; WA 98.3 3.6E-06 1.2E-10 69.8 9.2 129 43-192 34-174 (260)
22 1wdu_A TRAS1 ORF2P; four-layer 98.2 1.9E-05 6.4E-10 64.5 11.3 59 122-191 101-159 (245)
23 2voa_A AF_EXO, XTHA, exodeoxyr 98.1 4.2E-05 1.4E-09 62.2 11.5 50 137-191 98-151 (257)
24 2jc5_A Exodeoxyribonuclease; h 97.9 4.8E-05 1.6E-09 61.7 9.8 52 136-192 101-155 (259)
25 2o3h_A DNA-(apurinic or apyrim 97.8 3.7E-05 1.3E-09 63.8 7.5 50 136-191 130-182 (285)
26 1hd7_A DNA-(apurinic or apyrim 97.8 3.7E-05 1.3E-09 65.5 6.9 51 136-192 163-216 (318)
27 2j63_A AP-endonuclease; base e 97.7 0.00046 1.6E-08 62.9 13.6 64 126-189 272-358 (467)
28 3g91_A MTH0212, exodeoxyribonu 97.6 6.6E-05 2.3E-09 61.8 6.0 51 136-191 103-156 (265)
29 2ei9_A Non-LTR retrotransposon 97.3 0.00044 1.5E-08 57.0 7.3 57 123-192 77-133 (240)
30 4b8c_D Glucose-repressible alc 97.3 2.7E-05 9.1E-10 74.3 -0.6 59 134-192 545-609 (727)
31 1sr4_B CDT B, cytolethal diste 97.0 0.0047 1.6E-07 52.2 10.5 60 122-188 120-179 (261)
32 2f1n_A CDT B, cytolethal diste 95.2 0.43 1.5E-05 40.1 13.1 63 122-192 129-191 (262)
33 3pt1_A UPF0364 protein YMR027W 58.0 1.6 5.6E-05 39.6 -0.7 15 176-190 375-389 (471)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=1.9e-52 Score=365.32 Aligned_cols=180 Identities=38% Similarity=0.776 Sum_probs=169.7
Q ss_pred CCCccceeEEEEeeee-----------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhccCCCCe
Q psy11370 27 KSNKRLVKIFVGTWNY-----------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENY 83 (208)
Q Consensus 27 ~~~~~~i~v~i~TWNv-----------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~~~~Y 83 (208)
||..++++|+++|||| |||| ||+++++.++++.+++..++|.+.|.++|+ +..+|
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~~l~~wL~~~~~~pDI~viGl-QE~~l~~~~~~~~~~~~~~~W~~~i~~~L~-~~~~Y 79 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGF-QELDLSKEAFFFHDTPKEEEWFKAVSEGLH-PDAKY 79 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCSCTHHHHSSSCCCCSEEEEEE-ECSCCSHHHHTTCCCHHHHHHHHHHHHHSC-TTSCE
T ss_pred CceeeccEEEEEEEEcCCccCchhHHHHhcccCCCCCeEEEEE-EecccchhhhcccCcchHHHHHHHHHHhcC-CCCCE
Confidence 7888999999999999 8999 999999999998888899999999999998 56789
Q ss_pred EEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHH
Q psy11370 84 TQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFK 160 (208)
Q Consensus 84 ~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~ 160 (208)
++|++.+|+|++|+||+|+++.++|++|++++|+|| .+||||||++||.+++++|||||||||||++++++||+||.
T Consensus 80 ~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~~~Rn~d~~ 159 (313)
T 3mtc_A 80 AKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYK 159 (313)
T ss_dssp EEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHH
T ss_pred EEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCC-----CCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCCC
Q psy11370 161 NILNQIHFKEN-----DKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208 (208)
Q Consensus 161 ~I~~~~~f~~~-----~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~~ 208 (208)
+|++++.|..+ +..+.+||++||+||||||+++++.++++++|+++++
T Consensus 160 ~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~ 212 (313)
T 3mtc_A 160 DICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDF 212 (313)
T ss_dssp HHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCH
T ss_pred HHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCH
Confidence 99999999762 3467899999999999999987899999999998864
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=3.4e-47 Score=332.75 Aligned_cols=168 Identities=26% Similarity=0.599 Sum_probs=145.0
Q ss_pred CCccceeEEEEeeee----------------------------------ccccccccccchhhhhccCCchhHHHHHHHH
Q psy11370 28 SNKRLVKIFVGTWNY----------------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVIT 73 (208)
Q Consensus 28 ~~~~~i~v~i~TWNv----------------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~ 73 (208)
.++..|+|||+|||| |||| ||++. ..++|.+.|.
T Consensus 3 ~~~~~i~i~vgTwNv~g~~p~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~-QE~~~-----------~~~~W~~~i~ 70 (316)
T 4a9c_A 3 DEPDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGT-QENSV-----------GDREWLDLLR 70 (316)
T ss_dssp ---CEEEEEEEEEECTTSCCCSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEE-ESCCS-----------CHHHHHHHHH
T ss_pred CCCCeEEEEEEEeEcCCcCCCcchhHhhcccccccCcccccccCCCcEEEEec-ccccc-----------chhHHHHHHH
Confidence 467899999999999 5566 76642 4799999999
Q ss_pred Hhhcc-CCCCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCCC
Q psy11370 74 KCLET-LPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASHI 149 (208)
Q Consensus 74 ~~L~~-~~~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~ 149 (208)
++|+. ...+|++|.+.+|+|++|+||+|+++.++|+++++++|+|| .+||||||++||.+++++||||||||+||+
T Consensus 71 ~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~ 150 (316)
T 4a9c_A 71 GGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGN 150 (316)
T ss_dssp HHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCST
T ss_pred HHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCc
Confidence 99983 24689999999999999999999999999999999999999 689999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCC----CCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCCC
Q psy11370 150 NNVEARNADFKNILNQIHFKEND----KLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208 (208)
Q Consensus 150 ~~~~~Rn~~~~~I~~~~~f~~~~----~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~~ 208 (208)
+++++||+||.+|++++.|+++. ....++|+|||+|||||||+ ++.++++++|+++++
T Consensus 151 ~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~-~~~~~v~~~i~~~~~ 212 (316)
T 4a9c_A 151 EKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD-MDIQEILNYISRKEF 212 (316)
T ss_dssp TCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBS-SCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcC-CCHHHHHHHHhcccH
Confidence 99999999999999999997531 12346899999999999999 999999999999875
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=4.8e-46 Score=329.86 Aligned_cols=193 Identities=31% Similarity=0.635 Sum_probs=170.0
Q ss_pred hhhhhcccccchhccCCCccceeEEEEeeee------------------------cccccccc-ccchhhhhccCCchhH
Q psy11370 12 NGVITYQPDKSQKLNKSNKRLVKIFVGTWNY------------------------LIPFSQEL-DLSKEAILYDRSSREK 66 (208)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~v~i~TWNv------------------------viGl~QEi-dl~~~~~~~~~~~~~~ 66 (208)
+.++..+|..++ ++|+..++++|+|+|||| |||| ||+ ++++.+++..++...+
T Consensus 5 ~~~~~~~l~~r~-~e~~~~~~~~i~v~TwNv~g~~~~~~l~~~L~~~~~~~~DI~vigl-QEiv~l~~~~~~~~~~~~~~ 82 (347)
T 1i9z_A 5 HEYVNHELRKRE-NEFSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGF-QEIVQLTPQQVISADPAKRR 82 (347)
T ss_dssp HHHHHHHHHHTG-GGTEEEEEEEEEEEEEECTTCCCCSCCHHHHSCSSSCCCSEEEEEE-ECSSCCC-----CCCHHHHH
T ss_pred HHHHHHHHHHHH-HhcCCCCCcEEEEEeEecCCCCCchhHHHHhccccCCCCCEEEEEe-EEeecCchhhhcccCchhHH
Confidence 345677777777 999999999999999999 7999 998 8888887776777889
Q ss_pred HHHHHHHHhhcc---CCCCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEE
Q psy11370 67 DWLAVITKCLET---LPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICF 140 (208)
Q Consensus 67 ~W~~~i~~~L~~---~~~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~f 140 (208)
.|.+.|.++|+. .+..|+++.+.+|+|++|+||+|.++.++|++++++.++|| .+||||||+++|.+++++|||
T Consensus 83 ~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~f 162 (347)
T 1i9z_A 83 EWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCF 162 (347)
T ss_dssp HHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEE
Confidence 999999999973 35799999999999999999999999999999999999998 789999999999999999999
Q ss_pred EeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCCC
Q psy11370 141 ICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208 (208)
Q Consensus 141 vn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~~ 208 (208)
|||||+||++++++|++||++|++++.|.. ...+.+||++|||||||||++ ++.++++++|+++++
T Consensus 163 vn~HLaa~~~~~~~R~~d~~~I~~~l~f~~-~~~i~~~d~v~~~GDlNyRi~-~~~~~v~~~i~~~~~ 228 (347)
T 1i9z_A 163 ITSHLAAGYTNYDERDHDYRTIASGLRFRR-GRSIFNHDYVVWFGDFNYRIS-LTYEEVVPCIAQGKL 228 (347)
T ss_dssp EEEECCCCSSCHHHHHHHHHHHHHHCCCGG-GCCTTSSSEEEEEEECCCCBS-SCHHHHHHHHHTTCH
T ss_pred EEecCCCCCccHHHHHHHHHHHHHhhccCc-ccccccCccEEEecccccccC-CCHHHHHHHHhhccH
Confidence 999999999999999999999999999976 456788999999999999999 999999999998763
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=308.96 Aligned_cols=172 Identities=24% Similarity=0.448 Sum_probs=154.4
Q ss_pred ccccchhccCCCccceeEEEEeeee--------------------------ccccccccccchhhhhccCCchhHHHHHH
Q psy11370 18 QPDKSQKLNKSNKRLVKIFVGTWNY--------------------------LIPFSQELDLSKEAILYDRSSREKDWLAV 71 (208)
Q Consensus 18 ~~~~~~~~~~~~~~~i~v~i~TWNv--------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~ 71 (208)
.|...+..+|++.++++|+|+|||| |||| ||++. ..++|.+.
T Consensus 11 ~l~~~el~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGl-QEi~~-----------~~~~W~~~ 78 (357)
T 2xsw_A 11 LLGADELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGV-QEGCS-----------DRREWETR 78 (357)
T ss_dssp TTSHHHHHHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEE-ESCCS-----------CHHHHHHH
T ss_pred ccChhhhhhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEe-eeccc-----------hHHHHHHH
Confidence 4556677889999999999999999 6888 88853 25899999
Q ss_pred HHHhhccCCCCeEEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc---ccCCCceeEEEEEECCeEEEEEeecCCCC
Q psy11370 72 ITKCLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIRFELYRTGICFICSHFASH 148 (208)
Q Consensus 72 i~~~L~~~~~~Y~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~ 148 (208)
+.++|+ ..|+++.+.+|+|++|+||+|+++.++|++++++.++|| .+||||||++||.+++++||||||||+||
T Consensus 79 l~~~L~---~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 79 LQETLG---PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHC---TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHhC---CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 999997 589999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCC-----------CCCCCCceEEEEcccCCcCCCCCHHHHHHHHHc
Q psy11370 149 INNVEARNADFKNILNQIHFKEND-----------KLIPDHDLIFWFGDLNYRFDKLSRDSVIELINR 205 (208)
Q Consensus 149 ~~~~~~Rn~~~~~I~~~~~f~~~~-----------~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~ 205 (208)
++++++||+||.+|++.+.|+... ..+.++|++||+||||||++ +++++++++|++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~-~~~~~v~~~i~~ 222 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS-GGRTVVDALLCQ 222 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS-SCHHHHHHHHC-
T ss_pred CchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc-cchHHHHHHHhh
Confidence 999999999999999999996520 11246899999999999999 899999998863
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=2.1e-34 Score=247.98 Aligned_cols=164 Identities=16% Similarity=0.306 Sum_probs=141.7
Q ss_pred CCccceeEEEEeeee------------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhccCCCCe
Q psy11370 28 SNKRLVKIFVGTWNY------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENY 83 (208)
Q Consensus 28 ~~~~~i~v~i~TWNv------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~~~~Y 83 (208)
++.++++|+|+|||| |||| ||+++++.+. .....|.+.+.++|+ ...|
T Consensus 2 ~~~~~~~i~V~T~Nv~~~~~~~~l~~wl~~~~~~~pDI~vigl-QEv~~~~~~~-----~~~~~w~~~l~~~L~--~~~Y 73 (282)
T 2imq_X 2 SPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAV-QGFGFQTDKP-----QQGPACVKNFQSLLT--SKGY 73 (282)
T ss_dssp -CCSEEEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEE-EESCTTTCTT-----CCHHHHHHHHHHHHH--HTTE
T ss_pred CCCCCcEEEEEEEeCCCCcCchhHHHHhcccccCCCCEEEEEe-eeeccccccc-----hhhHHHHHHHHHhcC--CCce
Confidence 456789999999999 6899 9998765331 457899999999998 4689
Q ss_pred EEEEe--eeeeeeEEEEEEecCCCCcceeeeeecccccccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHH
Q psy11370 84 TQVEA--IRMLGIMMVIFVRDSFLSQITNIDKDRMSSGDLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKN 161 (208)
Q Consensus 84 ~~v~~--~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~ 161 (208)
..+.+ .+++|++++||+|.++.+.++.++...+ .|.+|||||+++++.+++++|||+||||+|++++.++|+++++.
T Consensus 74 ~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~~~~-~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~~R~~~~~~ 152 (282)
T 2imq_X 74 TKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVT-VDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDT 152 (282)
T ss_dssp EEEEEEECSSEEEEEEEEGGGCCTTTCCCEEEEEE-CSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSSSSCCG
T ss_pred EEEEeccCceeEEEEEEEEccccCccceeeeeccc-cccccCCceEEEEEEECCEEEEEEEECCCCCCchHHHHHHHHHH
Confidence 99998 8899999999999999988887765333 35789999999999999999999999999999888999999999
Q ss_pred HHHHcCCCCCCCCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcCC
Q psy11370 162 ILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207 (208)
Q Consensus 162 I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~~ 207 (208)
|++++.+ +.++|++||+||||||++ .+.++++++|++++
T Consensus 153 I~~~~~~------~~~~~~vi~~GDfN~r~~-~~~~~~~~~i~~~~ 191 (282)
T 2imq_X 153 RLDYSKK------DDPSDFLFWIGDLNVRVE-TNATHAKSLVDQNN 191 (282)
T ss_dssp GGCTTSS------SSCCSEEEEEEECSCCBC-SCHHHHHHHHHTTC
T ss_pred HHHhhhc------cCccceEEEecccccccC-CCHHHHHHHHhhcc
Confidence 9876653 357899999999999999 89999999998865
No 6
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.15 E-value=5.6e-10 Score=91.79 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=80.9
Q ss_pred ccccccccccchh-hhhccCCchhHHHHHHHHHhhccC-CCCeEEEEee-----eeeeeEEEEEEecCCCCcceeeeeec
Q psy11370 43 LIPFSQELDLSKE-AILYDRSSREKDWLAVITKCLETL-PENYTQVEAI-----RMLGIMMVIFVRDSFLSQITNIDKDR 115 (208)
Q Consensus 43 viGl~QEidl~~~-~~~~~~~~~~~~W~~~i~~~L~~~-~~~Y~~v~~~-----~l~Gl~l~vfvr~~~~~~I~~v~~~~ 115 (208)
++|| ||++.... ..+.+ ......|...+.+.|... ...|...... .-.+-.++++.|..+ .....-.
T Consensus 37 Ii~L-QEv~~~~~~~~~~~-~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~----~~~~~~~ 110 (266)
T 3teb_A 37 VIAM-QEVNQLMNNKIIFD-DIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKI----KAEDEFY 110 (266)
T ss_dssp EEEE-EEEEEETTSCEEET-TEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEEESSCC----SEEEEEE
T ss_pred EEEE-EEcccccccccccc-ccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEEECcee----cCceeEE
Confidence 9999 99964321 11111 112223444445555421 1246654211 122234555555432 2222211
Q ss_pred cc-cc---ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 116 MS-SG---DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 116 v~-tG---~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
.. +. ....++++.+++.+.+..+.++|+||.+.....+.|..++..+.+.+. +...++++||||-..
T Consensus 111 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~---------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 111 CTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQ---------NSNLKILMGDFNTDA 181 (266)
T ss_dssp CSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSC---------SCCEEEEEEECCCCT
T ss_pred eCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChHHHHHHHHHHHHHHh---------cCCcEEEEeECCCCC
Confidence 11 11 345689999999999999999999999986666679999999976542 257899999999976
Q ss_pred C
Q psy11370 192 D 192 (208)
Q Consensus 192 ~ 192 (208)
.
T Consensus 182 ~ 182 (266)
T 3teb_A 182 I 182 (266)
T ss_dssp T
T ss_pred C
Confidence 3
No 7
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.14 E-value=8.1e-10 Score=89.49 Aligned_cols=129 Identities=20% Similarity=0.320 Sum_probs=85.3
Q ss_pred eeEEEEeeee-------------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhccCCCCeEEEE
Q psy11370 33 VKIFVGTWNY-------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENYTQVE 87 (208)
Q Consensus 33 i~v~i~TWNv-------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~~~~Y~~v~ 87 (208)
-.+-|.|||| ++|| ||++ ..+.+.+.+.+. .|....
T Consensus 8 ~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~L-QEv~--------------~~~~~~l~~~~~----~~~~~~ 68 (256)
T 4gz1_A 8 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFL-QEVI--------------PPYCAYLKKRAA----SYTIIT 68 (256)
T ss_dssp GEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEE-EEEC--------------HHHHHHHHHHCT----TEEEEE
T ss_pred CcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEE-EcCC--------------HHHHHHHHhhcc----ccceee
Confidence 3788999999 8888 8874 123344555544 343332
Q ss_pred eeeeeeeEEEEEEecCCCCcceeeeeeccccc-ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHc
Q psy11370 88 AIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG-DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQI 166 (208)
Q Consensus 88 ~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG-~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~ 166 (208)
. .-.+-..+++.+++..+ .......... ....++.+.+.+...+..+.++|+||.++....+.|.+++..+++.+
T Consensus 69 ~-~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l 144 (256)
T 4gz1_A 69 G-NEEGYFTAILLKKGRVK---FKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKM 144 (256)
T ss_dssp S-CSSSSEEEEEEETTTEE---EEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred c-cccCCceEEEEEecccc---ceecccccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhhhhHHHHHHhhhh
Confidence 2 22233445566654322 2222222222 44567888899999999999999999999888888999999988776
Q ss_pred CCCCCCCCCCCCceEEEEcccCCc
Q psy11370 167 HFKENDKLIPDHDLIFWFGDLNYR 190 (208)
Q Consensus 167 ~f~~~~~~i~~~d~vfw~GDlNyR 190 (208)
.-. .+...++++||||.+
T Consensus 145 ~~~------~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 145 QEA------PDSTTVIFAGDTNLR 162 (256)
T ss_dssp HHS------CTTSEEEEEEECCCC
T ss_pred hhc------cCcceEEEeCccCCC
Confidence 421 234679999999975
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.12 E-value=2.1e-10 Score=93.14 Aligned_cols=136 Identities=19% Similarity=0.158 Sum_probs=87.0
Q ss_pred cceeEEEEeeee-------------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhccCCCCeEE
Q psy11370 31 RLVKIFVGTWNY-------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENYTQ 85 (208)
Q Consensus 31 ~~i~v~i~TWNv-------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~~~~Y~~ 85 (208)
+..++-|.|||| +||| ||+... +...+.+.+. .|..
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~L-QEv~~~--------------~~~~l~~~~~----~~~~ 70 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFL-QEVVDR--------------DLAPIDKLQS----LYKI 70 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEE-EEECST--------------TCHHHHGGGG----TEEE
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEE-EecChh--------------HhHHHHHhcC----CceE
Confidence 446889999999 9999 998421 1123344443 3333
Q ss_pred EEeeeeeeeEEEEEEecCCCCcceeeeeeccccc-ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy11370 86 VEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG-DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILN 164 (208)
Q Consensus 86 v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG-~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~ 164 (208)
.....-.+...+++.++.. .......+... ....++.+.+.+.+.+..+.++|+||.+.......|..+++.+..
T Consensus 71 ~~~~~~~~~g~~il~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~ 146 (256)
T 4fva_A 71 YYSNKGCQYYTAILVSKMF----DVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMD 146 (256)
T ss_dssp EESSTTSSSEEEEEEETTC----EEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHH
T ss_pred eecCCCCCcceEEEEeecc----cceecccccCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchHHHHHHHHHHHH
Confidence 3333333445566667633 23333333333 345667888889999999999999999988877888888877755
Q ss_pred HcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 165 QIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 165 ~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
.+.... ...+...++++||||.+-.
T Consensus 147 ~~~~~~---~~~~~~~vIl~GDfN~~~~ 171 (256)
T 4fva_A 147 KVREII---AQNPGALVFFGGDLNLRDE 171 (256)
T ss_dssp HHHHHH---HHSTTCEEEEEEECCCCGG
T ss_pred Hhhhhh---hccCCCcEEEeccCCCCcc
Confidence 432100 0124568999999997643
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.07 E-value=2.2e-09 Score=85.58 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=51.0
Q ss_pred CCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCc
Q psy11370 122 GNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYR 190 (208)
Q Consensus 122 gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyR 190 (208)
...+.+.+.+.+.+..+.++++||.+.....+.|.++++.+++.+.-. .+...++++||||..
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~------~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEA------PEDAIVIFAGDTNLR 156 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS------CTTEEEEEEEECCCC
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHHHhc------CCCCCEEEEEecCCC
Confidence 345677788889999999999999999888888999999998776421 234579999999954
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.06 E-value=4.5e-10 Score=99.16 Aligned_cols=138 Identities=18% Similarity=0.141 Sum_probs=92.1
Q ss_pred CccceeEEEEeeee-------------------------ccccccccccchhhhhccCCchhHHHHHHHHHhhccCCCCe
Q psy11370 29 NKRLVKIFVGTWNY-------------------------LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENY 83 (208)
Q Consensus 29 ~~~~i~v~i~TWNv-------------------------viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~~~~~Y 83 (208)
.....++-|+|||| +||| ||+... +...+.+.+. .|
T Consensus 114 ~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~L-QEv~~~--------------~~~~l~~~~~----~y 174 (362)
T 4gew_A 114 DLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFL-QEVVDR--------------DLAPIDKLQS----LY 174 (362)
T ss_dssp TTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEE-EEECST--------------TCHHHHGGGG----TE
T ss_pred CCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEE-EcCChh--------------HhHHHHHhcC----Cc
Confidence 45567899999999 9999 998421 1123444444 56
Q ss_pred EEEEeeeeeeeEEEEEEecCCCCcceeeeeeccccc-ccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHH
Q psy11370 84 TQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG-DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNI 162 (208)
Q Consensus 84 ~~v~~~~l~Gl~l~vfvr~~~~~~I~~v~~~~v~tG-~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I 162 (208)
.......-.+-..+|+.|+. +........... .....+++.+.+.+.+..+.++|+||.+.......|..++..+
T Consensus 175 ~~~~~~~~~~~G~aIlsk~~----i~~~~~~~~~~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l 250 (362)
T 4gew_A 175 KIYYSNKGCQYYTAILVSKM----FDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFC 250 (362)
T ss_dssp EEEESSTTSSSEEEEEEETT----EEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHH
T ss_pred eEEeCCCCCCceEEEEEecc----CccccccccCCCCCcccceEEEEEEEECCEEEEEEEecCCccccchhHHHHHHHHH
Confidence 66555555556677888863 233333333322 2335678888899999999999999999888888899988887
Q ss_pred HHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 163 LNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 163 ~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
...+.... ...+...++++||||-+-.
T Consensus 251 ~~~~~~~~---~~~~~~pvIl~GDFN~~p~ 277 (362)
T 4gew_A 251 MDKVREII---AQNPGALVFFGGDLNLRDE 277 (362)
T ss_dssp HHHHHHHH---HHCTTCEEEEEEECCCCGG
T ss_pred HHHhHhhh---hcCCCCCeEEeecCCCCCc
Confidence 65442100 0123467999999997643
No 11
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.85 E-value=1.6e-08 Score=83.10 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=48.5
Q ss_pred CCCceeEEEEEECCeEEEEEeecCCCCCC-----CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 122 GNKGGVAIRFELYRTGICFICSHFASHIN-----NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 122 gnKG~V~i~~~~~~~~~~fvn~HL~a~~~-----~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..++++.+++.+.+..+.++|+||++... ..+.|.+++..+.+.+.-. ......++++||||-..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~-----~~~~~~~Il~GDFN~~~~ 157 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE-----LKRDNPVLIMGDMNISPT 157 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH-----CCTTSCEEEEEECCCCCS
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh-----hhCCCCEEEEeECCCCCc
Confidence 45788999999988899999999998763 2356777777775554310 023467999999997654
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.82 E-value=2.6e-08 Score=82.42 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=67.4
Q ss_pred HHHHHhhccCCCCeEEEEeee----eeeeEEEEEEecCCCCcceeeeeecc------c-cc--ccCCCceeEEEEEE--C
Q psy11370 70 AVITKCLETLPENYTQVEAIR----MLGIMMVIFVRDSFLSQITNIDKDRM------S-SG--DLGNKGGVAIRFEL--Y 134 (208)
Q Consensus 70 ~~i~~~L~~~~~~Y~~v~~~~----l~Gl~l~vfvr~~~~~~I~~v~~~~v------~-tG--~~gnKG~V~i~~~~--~ 134 (208)
+.+.+.|. .|..+.... -.|-.+.+|.|++..+.+..-...-- + .| ...+++++.+.+.. .
T Consensus 53 ~~l~~~l~----~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 128 (267)
T 3g6s_A 53 QDLRAGLP----EYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKAT 128 (267)
T ss_dssp HHHHHHCT----TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTT
T ss_pred HHHHHhcc----CCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCC
Confidence 44555553 555554222 24455788888765544432221110 1 11 23467788888884 6
Q ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 135 RTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 135 ~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
+..++++|+||.+.. ...|.++.+.+.+.+.-. .+...++++||||-.-+
T Consensus 129 ~~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~l~~~------~~~~pvIl~GDfN~~~~ 178 (267)
T 3g6s_A 129 GKIFMAVNTHFDHVG--EEARRQSALLIIRKIKEI------VGERPAVVTGDFNVTDA 178 (267)
T ss_dssp CCEEEEEEEECCSSC--HHHHHHHHHHHHHHHHHH------TTTSCEEEEEECSSCTT
T ss_pred CCEEEEEEeCCCCCC--HHHHHHHHHHHHHHHHHh------cCCCCEEEEeECCCCCC
Confidence 789999999998753 567888877776655311 12456899999997544
No 13
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=6.8e-08 Score=81.86 Aligned_cols=114 Identities=17% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHHHHhhccCCCCeEEEEeee----eeeeEEEEEEecCCCCcceeeeee------ccccc--ccCCCceeEEEEE--EC
Q psy11370 69 LAVITKCLETLPENYTQVEAIR----MLGIMMVIFVRDSFLSQITNIDKD------RMSSG--DLGNKGGVAIRFE--LY 134 (208)
Q Consensus 69 ~~~i~~~L~~~~~~Y~~v~~~~----l~Gl~l~vfvr~~~~~~I~~v~~~------~v~tG--~~gnKG~V~i~~~--~~ 134 (208)
.+.+.+.|+ .|..+...+ -.|-..+++.|++..+.+..-... ..+.| ..-+++++.+.+. ..
T Consensus 57 ~~~l~~~l~----~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~ 132 (298)
T 3mpr_A 57 LKDMKEALP----GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDT 132 (298)
T ss_dssp HHHHHHHST----TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTT
T ss_pred HHHHHHhCC----CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCC
Confidence 455566664 566554333 245557788777665444322210 11112 2236778888888 46
Q ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 135 RTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 135 ~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
+..++++|+||.+. ....|.++...+.+.+.-.. . .....++++||||-.-.
T Consensus 133 g~~~~v~~~Hl~~~--~~~~R~~q~~~l~~~i~~~~-~---~~~~pvIl~GDfN~~~~ 184 (298)
T 3mpr_A 133 GFEFLFFNLHMDHI--GKKARVESAFLVQEKMKELG-R---GKNLPAILTGDFNVDQT 184 (298)
T ss_dssp CCEEEEEEEECCSS--CHHHHHHHHHHHHHHHHHTT-T---TSCCCEEEEEECSSCTT
T ss_pred CCEEEEEEecCCCC--CHHHHHHHHHHHHHHHHHHh-c---CCCCcEEEEEeCCCCCC
Confidence 78999999999853 35778888888866654211 0 02456899999997554
No 14
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.73 E-value=3.4e-08 Score=81.14 Aligned_cols=103 Identities=21% Similarity=0.105 Sum_probs=64.3
Q ss_pred CeEEEEeee---eeeeEEEEEEecCCCCcceeeeeec------ccc--cccCCCceeEEEEEEC--CeEEEEEeecCCCC
Q psy11370 82 NYTQVEAIR---MLGIMMVIFVRDSFLSQITNIDKDR------MSS--GDLGNKGGVAIRFELY--RTGICFICSHFASH 148 (208)
Q Consensus 82 ~Y~~v~~~~---l~Gl~l~vfvr~~~~~~I~~v~~~~------v~t--G~~gnKG~V~i~~~~~--~~~~~fvn~HL~a~ 148 (208)
.|..+...+ ..|-.+++|.|++..+.+..-...- .+. +....++++.+.+... +..+.++|+||.+.
T Consensus 57 ~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~ 136 (257)
T 3l1w_A 57 TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHI 136 (257)
T ss_dssp SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSS
T ss_pred CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCC
Confidence 354444332 3456788888876544333221100 111 1234778888888874 67899999999876
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 149 INNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 149 ~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
. .+.|..+...+.+.+.-. +.+ +.++++||||-.-+
T Consensus 137 ~--~~~r~~q~~~l~~~i~~~-----~~~-~pvil~GDfN~~~~ 172 (257)
T 3l1w_A 137 S--AHARLAGMTVILEELHDK-----IAQ-YPTLLMGDFNAESG 172 (257)
T ss_dssp C--HHHHHHHHHHHHHHTHHH-----HHH-SCEEEEEECCCCTT
T ss_pred C--HHHHHHHHHHHHHHHHHH-----cCC-CCEEEEeeCCCCCC
Confidence 3 467889999887766410 011 27899999997544
No 15
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.68 E-value=1.2e-07 Score=81.48 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=57.9
Q ss_pred ccCCCceeEEEEEECCeEEEEEeecCCCCCC------CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCCC
Q psy11370 120 DLGNKGGVAIRFELYRTGICFICSHFASHIN------NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDK 193 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~------~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~~ 193 (208)
...+||.+.+++.+.+..+.++|+||.+... ....|..|...|.+.+.-. .......++++||||-.-..
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~----~~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK----NIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH----TCCTTSCEEEEEECCCCTTS
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh----ccCCCCeEEEEeECCCCCCC
Confidence 5679999999999999999999999998753 3788999998887665421 11235678999999988773
Q ss_pred CCHHHHH
Q psy11370 194 LSRDSVI 200 (208)
Q Consensus 194 l~~~~v~ 200 (208)
.++....
T Consensus 222 ~~~~~l~ 228 (317)
T 3i41_A 222 PEFKDML 228 (317)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 16
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.66 E-value=5.2e-08 Score=81.87 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=53.2
Q ss_pred ccCCCceeEEEEEECCeEEEEEeecCCCCCC------CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 120 DLGNKGGVAIRFELYRTGICFICSHFASHIN------NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~------~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
...++|++.+.+.+.+..+.++|+||.+... ....|..++..|.+.+.-. .......++++||||-..+
T Consensus 127 ~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~----~~~~~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 127 RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK----NIPKDEIIFIGGDLNVNYG 201 (301)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEEECCCCTT
T ss_pred cccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh----CCCCCCeEEEEeeCCCCCC
Confidence 4458899999999999999999999998743 4567888988886655310 0123468999999998877
No 17
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.60 E-value=9.4e-08 Score=80.34 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=51.1
Q ss_pred ccCCCceeEEEEEECCeEEEEEeecCCCCC------CCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 120 DLGNKGGVAIRFELYRTGICFICSHFASHI------NNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 120 ~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~------~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
....+|++.+.+.+.+..+.++|+||.+.. .....|..++..|.+.+.-. .......++++||||-..
T Consensus 127 ~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~----~~~~~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 127 NLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK----NIPNNEYVLIGGDMNVNK 200 (306)
T ss_dssp -CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH----TCCTTSCEEEEEECCCCC
T ss_pred hhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----cCCCCCEEEEEeeCCCCc
Confidence 345889999999999999999999999874 34677888988886655310 012345789999999887
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.36 E-value=1.9e-06 Score=70.06 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=33.8
Q ss_pred EEEEEeecCCCCCC----CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 137 GICFICSHFASHIN----NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 137 ~~~fvn~HL~a~~~----~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
.+.++|+|+++... ..+.|.++++.+.+.+.-. ......++++||||-..+
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~-----~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDE-----MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHH-----HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHH-----hcCCCCEEEEeECCCCCc
Confidence 69999999998764 3445666666654433210 013456899999998765
No 19
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=98.32 E-value=4.5e-06 Score=74.78 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=45.6
Q ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHHcC-CCCC-C------CCCCCCceEEEEcccCCcCCCCCHHHHHHHHHcC
Q psy11370 136 TGICFICSHFASHINNVEARNADFKNILNQIH-FKEN-D------KLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRK 206 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~-f~~~-~------~~i~~~d~vfw~GDlNyRi~~l~~~~v~~~i~~~ 206 (208)
..++++|.||..+...-..|..|...|++.+. +... . ..-...-.+|++||||---+ ..+.+++.+|
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~----s~vy~~L~~G 269 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD----SGVVEYLSNG 269 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTT----SHHHHHHHHT
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCC----CHHHHHHhcC
Confidence 46999999999988777889999988877653 1100 0 00012347899999997544 6677777655
No 20
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.30 E-value=1.2e-05 Score=64.48 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=48.0
Q ss_pred EEEEEEecCCCCcceeeeeecccccccCCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCC
Q psy11370 95 MMVIFVRDSFLSQITNIDKDRMSSGDLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKL 174 (208)
Q Consensus 95 ~l~vfvr~~~~~~I~~v~~~~v~tG~~gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~ 174 (208)
..+++.|.++...+.....+ . ..-.+.+.+.+.+..+.++|+|+++... + +.+.++.+.+.-.
T Consensus 73 Gvail~r~~~~~~~~~~~~~--~-----~~r~i~~~~~~~~~~~~v~~~y~p~~~~--~---~~~~~l~~~l~~~----- 135 (238)
T 1vyb_A 73 GVAILVSDKTDFKPTKIKRD--K-----EGHYIMVKGSIQQEELTILNIYAPNTGA--P---RFIKQVLSDLQRD----- 135 (238)
T ss_dssp CEEEEECTTCCCEEEEEEEC--T-----TSSEEEEEEEETTEEEEEEEEECCSSSH--H---HHHHHHHHHTTTT-----
T ss_pred eEEEEEeCCCCccccceeEc--C-----CCcEEEEEEEeCCCcEEEEEEecCCCCc--H---HHHHHHHHHHHhc-----
Confidence 56777887643333322111 1 1124667777888999999999987653 2 2344455544311
Q ss_pred CCCCceEEEEcccCCcCC
Q psy11370 175 IPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 175 i~~~d~vfw~GDlNyRi~ 192 (208)
....++++||||-..+
T Consensus 136 --~~~~~Il~GDFN~~~~ 151 (238)
T 1vyb_A 136 --LDSHTLIMGDFNTPLS 151 (238)
T ss_dssp --CCTTEEEEEECSSCSS
T ss_pred --cCCCEEEEccCCCCCC
Confidence 2357899999998544
No 21
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.26 E-value=3.6e-06 Score=69.77 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred ccccccccccchhhhhccCCchhHHHHHHHHHhhcc-CCCCeEEEEeeeee----eeEEEEEEecCCCCcceeeeeec--
Q psy11370 43 LIPFSQELDLSKEAILYDRSSREKDWLAVITKCLET-LPENYTQVEAIRML----GIMMVIFVRDSFLSQITNIDKDR-- 115 (208)
Q Consensus 43 viGl~QEidl~~~~~~~~~~~~~~~W~~~i~~~L~~-~~~~Y~~v~~~~l~----Gl~l~vfvr~~~~~~I~~v~~~~-- 115 (208)
++|| ||++-... ... ..+.+.|+. .+..|..+.+...+ +....++.|++....++......
T Consensus 34 Iv~L-QEv~~~~~----------~~~-~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~~~~~ 101 (260)
T 2a40_B 34 IVLI-QEVRDSHL----------VAV-GKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGC 101 (260)
T ss_dssp EEEE-EEECCTTS----------HHH-HHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEECCTTS
T ss_pred EEEE-EEEEcCch----------hHH-HHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCceeccCCC
Confidence 7999 99863211 112 234455542 13568777665543 35556666665432222211110
Q ss_pred cccc--ccCCCceeEEEEEEC---CeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCc
Q psy11370 116 MSSG--DLGNKGGVAIRFELY---RTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYR 190 (208)
Q Consensus 116 v~tG--~~gnKG~V~i~~~~~---~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyR 190 (208)
...| .+ .+....+.|... +..|.++++||.+... .++.+.+.++++.+.-. .+...++++||||-.
T Consensus 102 ~~~~~~~~-~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~--~~q~~~l~~~~~~~~~~------~~~~~vil~GDfN~~ 172 (260)
T 2a40_B 102 ESCGNDSF-SREPAVVKFSSHSTKVKEFAIVALHSAPSDA--VAEINSLYDVYLDVQQK------WHLNDVMLMGDFNAD 172 (260)
T ss_dssp TTTHHHHC-SSCCEEEEEECTTSSSSEEEEEECCCCGGGH--HHHHHHHHHHHHHHHHH------HCCCCEEEEEECCCS
T ss_pred cCCCCCce-eeCCEEEEEEeCCCCCceEEEEEecCCCCCc--HHHHHHHHHHHHHHHHh------CCCCCEEEEecCCCC
Confidence 1112 22 366677778765 6789999999997543 12234444444333100 123578999999976
Q ss_pred CC
Q psy11370 191 FD 192 (208)
Q Consensus 191 i~ 192 (208)
..
T Consensus 173 ~~ 174 (260)
T 2a40_B 173 CS 174 (260)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 22
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.16 E-value=1.9e-05 Score=64.51 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 122 GNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 122 gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
...|.+.+.+...+..+.++|+|++++.. .+.+.+++..+++.+ ....++++||||-..
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~~~~~l~~~~~~~----------~~~~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP-IESYLEQIKRVERKM----------GPKRLIFGGDANAKS 159 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC-SHHHHHHHHHHHHTT----------CSSSEEEEEECCCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHHHHHHHHHHHHHh----------CCCcEEEEeccccCc
Confidence 35677888888888899999999998764 345666777776533 224689999999654
No 23
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.06 E-value=4.2e-05 Score=62.21 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=30.6
Q ss_pred EEEEEeecCCCCCC----CHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 137 GICFICSHFASHIN----NVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 137 ~~~fvn~HL~a~~~----~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
.+.++|+|+++... ..+.|.+.++.+.+.+.- .......++++||||-..
T Consensus 98 ~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~-----~~~~~~p~Il~GDFN~~~ 151 (257)
T 2voa_A 98 GIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQK-----TVDFRSFAVWCGDMNVAP 151 (257)
T ss_dssp TEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHH-----HCCTTSCEEEEEECSCCC
T ss_pred CEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHH-----HhcCCCCEEEEeeCCCCC
Confidence 68999999988653 233454455555433310 001345789999999654
No 24
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.95 E-value=4.8e-05 Score=61.72 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=32.7
Q ss_pred eEEEEEeecCCCCCCCHHH---HHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 136 TGICFICSHFASHINNVEA---RNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~~~~~---Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..+.++|+|+++.....++ |.++++.+.+.+.-. ......++++||||-..+
T Consensus 101 ~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~-----~~~~~~~Il~GDFN~~~~ 155 (259)
T 2jc5_A 101 GRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAM-----KNEGRDIVVCGDWNIAHQ 155 (259)
T ss_dssp TTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHH-----HHTCSEEEEEEECCCCCS
T ss_pred CCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHH-----HhcCCCEEEEeeCCCCCc
Confidence 4789999999998764222 334555554433200 012467999999999754
No 25
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.84 E-value=3.7e-05 Score=63.83 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=33.0
Q ss_pred eEEEEEeecCCCCCCC---HHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 136 TGICFICSHFASHINN---VEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~~---~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
..+.++|+|+++.... .+.|.+++..+.+.+.-. .....++++||||-..
T Consensus 130 ~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~------~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 130 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGL------ASRKPLVLCGDLNVAH 182 (285)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHH------HTTSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhh------ccCCCEEEEEECCCCC
Confidence 5799999999876542 445766666664443210 1126789999999754
No 26
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.79 E-value=3.7e-05 Score=65.55 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEEEEeecCCCCCCC---HHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 136 TGICFICSHFASHINN---VEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~~---~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..+.++|+|+++.... .+.|.+++..+.+.+.- +.....++++||||-..+
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~------~~~~~pvIl~GDFN~~~~ 216 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG------LASRKPLVLCGDLNVAHE 216 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH------HHHHSCEEEEEECSCCCS
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh------cccCCCEEEEeeCCCCCh
Confidence 4789999999876542 44576776666544321 001256899999997653
No 27
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.74 E-value=0.00046 Score=62.86 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=35.0
Q ss_pred eeEEEEEECC------eEEEEEeecCCCCCC---CHHHHH----HHHHHHHHHcC------CCCC---CCCC-CCCceEE
Q psy11370 126 GVAIRFELYR------TGICFICSHFASHIN---NVEARN----ADFKNILNQIH------FKEN---DKLI-PDHDLIF 182 (208)
Q Consensus 126 ~V~i~~~~~~------~~~~fvn~HL~a~~~---~~~~Rn----~~~~~I~~~~~------f~~~---~~~i-~~~d~vf 182 (208)
.+.+.+.+.+ ..|.++|+|++.+.. ..+.|. +++.+.++++. +..+ ...+ .....++
T Consensus 272 ~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvI 351 (467)
T 2j63_A 272 VLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFI 351 (467)
T ss_dssp EEEEEECSSCCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEE
T ss_pred EEEEEEEeCCcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEE
Confidence 4555555555 679999999987643 333344 23334444442 0000 0000 1346899
Q ss_pred EEcccCC
Q psy11370 183 WFGDLNY 189 (208)
Q Consensus 183 w~GDlNy 189 (208)
++||||-
T Consensus 352 L~GDFN~ 358 (467)
T 2j63_A 352 WAGDLNV 358 (467)
T ss_dssp EEEECCC
T ss_pred EeccccC
Confidence 9999995
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=97.64 E-value=6.6e-05 Score=61.81 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=32.1
Q ss_pred eEEEEEeecCCCCCCCH---HHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcC
Q psy11370 136 TGICFICSHFASHINNV---EARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRF 191 (208)
Q Consensus 136 ~~~~fvn~HL~a~~~~~---~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi 191 (208)
..+.++|+|++.+.... +.|.+.++++.+.+.-.. .....++++||||-..
T Consensus 103 ~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~-----~~~~~~ii~GDfN~~~ 156 (265)
T 3g91_A 103 DDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRER-----DSGRNVIICGDFNTAH 156 (265)
T ss_dssp SSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHH-----HTTCCEEEEEECCCCC
T ss_pred CCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHH-----cCCCCEEEECccccCC
Confidence 47889999999887652 335555555543332100 1246789999999554
No 29
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.35 E-value=0.00044 Score=57.05 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 123 NKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 123 nKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
..|++.+.+.. ..+.++|+|++.+.. .+.+.+.+..+...+. ...++++||||---+
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~-~~~~~~~l~~l~~~~~----------~~~~Ii~GDfN~~~~ 133 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDP-IDPYLHRLGNILDRLR----------GARVVICADTNAHSP 133 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSC-SHHHHHHHHHHHHHTT----------TSCEEEEEECCCCCG
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCc-hhHHHHHHHHHHHhcC----------CCcEEEEEecccccc
Confidence 46776666543 568999999999865 3555666666654331 146899999996543
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.32 E-value=2.7e-05 Score=74.30 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCC------CCCCCCceEEEEcccCCcCC
Q psy11370 134 YRTGICFICSHFASHINNVEARNADFKNILNQIHFKEND------KLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 134 ~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~------~~i~~~d~vfw~GDlNyRi~ 192 (208)
.+..++++|+||.++...-..|..+...+++.+.--... ..-.....++++||||-.-+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~ 609 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYIN 609 (727)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCC
Confidence 467899999999987554455776666665554311000 00012457899999996554
No 31
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=97.04 E-value=0.0047 Score=52.17 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccC
Q psy11370 122 GNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLN 188 (208)
Q Consensus 122 gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlN 188 (208)
-..|++.++ +.+ +.|++.||.+... .+|.+....|...+.-.. ...-..+.-.+.+||||
T Consensus 120 ~~R~~l~i~--i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~~~~~~-~~~~~~~~~~ii~GDFN 179 (261)
T 1sr4_B 120 QSRPAVGIR--IGT--DVFFTVHALATGG--SDAVSLIRNIFTTFNSSS-SPPERRVYSWMVVGDFN 179 (261)
T ss_dssp CCCCEEEEE--ETT--EEEEEEECCTTTT--TTHHHHHHHHHHHHHC----CGGGGGCEEEEEEECS
T ss_pred cCcceEEEE--ECC--eEEEEeCCCCCCC--chHHHHHHHHHHHHHhcc-cCCcccCCcEEEEeeCC
Confidence 477888884 676 9999999999863 235666666755332100 00001225889999999
No 32
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=95.24 E-value=0.43 Score=40.11 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=41.0
Q ss_pred CCCceeEEEEEECCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEcccCCcCC
Q psy11370 122 GNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFD 192 (208)
Q Consensus 122 gnKG~V~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~~~~~I~~~~~f~~~~~~i~~~d~vfw~GDlNyRi~ 192 (208)
+.+..+++++ . ...|.+.|+.|.-+ ..|.++.+.|..-+.-.+ ..+...--.+++||||-.-+
T Consensus 129 ~~Rp~lgiri--~--~~~ff~tHa~a~~g--~da~a~v~~I~~~~~~~~--~~~~~~~pwii~GDFNr~P~ 191 (262)
T 2f1n_A 129 GGRPLLGIRI--G--NDAFFTAHAIAMRN--NDAPALVEEVYNFFRDSR--DPVHQALNWMILGDFNREPA 191 (262)
T ss_dssp TCCCEEEEEE--T--TEEEEEEECCSSSS--CSHHHHHHHHHHHHHTCS--SHHHHTCEEEEEEECSSCHH
T ss_pred CCCceEEEEE--C--CEEEEEEEecCCCC--ccHHHHHHHHHHHHhcCc--ccccCCCcEEEEecCCCCCc
Confidence 3788888886 2 48899999999843 237777888865443110 00000137899999997654
No 33
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=58.04 E-value=1.6 Score=39.55 Aligned_cols=15 Identities=47% Similarity=0.939 Sum_probs=13.7
Q ss_pred CCCceEEEEcccCCc
Q psy11370 176 PDHDLIFWFGDLNYR 190 (208)
Q Consensus 176 ~~~d~vfw~GDlNyR 190 (208)
.+.+.||+=||||||
T Consensus 375 ~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYR 389 (471)
T ss_dssp TTCSEEEEEHHHHHH
T ss_pred hhCcEEEEecchhhh
Confidence 468999999999999
Done!