RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11370
(208 letters)
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas;
INPP5BA,phosphoinositide 5-phosphatase, inositol
signalling, phosphatase, magnesium; HET: PIF; 2.40A
{Homo sapiens} PDB: 3n9v_A
Length = 313
Score = 177 bits (450), Expect = 3e-55
Identities = 70/211 (33%), Positives = 117/211 (55%), Gaps = 33/211 (15%)
Query: 28 SNKRLVKIFVGTWN-----------------------YLIPFSQELDLSKEAILYDRSSR 64
+ + + F GT+N Y + F QELDLSKEA + + +
Sbjct: 3 TYIQNFRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGF-QELDLSKEAFFFHDTPK 61
Query: 65 EKDWLAVITKCLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DL 121
E++W +++ L Y +V+ IR++GIM++++V+ + I+ ++ + + +G +
Sbjct: 62 EEEWFKAVSEGLHP-DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRM 120
Query: 122 GNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKEND-----KLIP 176
GNKGGVAIRF+ + T IC + SH A+HI E RN D+K+I +++ F + D I
Sbjct: 121 GNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTIS 180
Query: 177 DHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207
+HD+I W GDLNYR ++L + V +LI K+
Sbjct: 181 NHDVILWLGDLNYRIEELDVEKVKKLIEEKD 211
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB:
1i9y_A*
Length = 347
Score = 167 bits (423), Expect = 7e-51
Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 32/211 (15%)
Query: 28 SNKRLVKIFVGTWN------------------------YLIPFSQELDLSKEAILYDRSS 63
S + VKIFV ++N Y++ F + + L+ + ++ +
Sbjct: 20 SEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPA 79
Query: 64 REKDWLAVITKCLETLP---ENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG- 119
+ ++W + + + L Y Q+ + +++G ++IF ++S L I N++ +G
Sbjct: 80 KRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGL 139
Query: 120 --DLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPD 177
GNKG VAIRF+ TG+CFI SH A+ N + R+ D++ I + + F+ I +
Sbjct: 140 GGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRS-IFN 198
Query: 178 HDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208
HD + WFGD NYR L+ + V+ I + ++
Sbjct: 199 HDYVVWFGDFNYRIS-LTYEEVVPCIAQGKL 228
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling,
structural genomics consortium stockholm, magnesium
binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB:
3nr8_B*
Length = 316
Score = 156 bits (395), Expect = 4e-47
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 31/213 (14%)
Query: 26 NKSNKRLVKIFVGTWN-----------------YLIPFSQELDLSKEAILY-----DRSS 63
+ ++ +F+GTWN L E+ ++ +Y + S
Sbjct: 1 SMDEPDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV 60
Query: 64 REKDWLAVITKCLETLPE-NYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSGDLG 122
+++WL ++ L+ L + +Y + + I + + V+ ++I+++ + +G
Sbjct: 61 GDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIAN 120
Query: 123 ---NKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKEND----KLI 175
NKG V + F T F+ H S RN ++ +IL + + +
Sbjct: 121 TLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDIS 180
Query: 176 PDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208
+FWFGDLNYR D + ++ I+RKE
Sbjct: 181 LRFTHLFWFGDLNYRLD-MDIQEILNYISRKEF 212
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling,
SGC stockholm, structural genomics CONS hydrolase; 1.90A
{Homo sapiens}
Length = 357
Score = 148 bits (374), Expect = 2e-43
Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 32/207 (15%)
Query: 28 SNKRLVKIFVGTWN---------YLIPFSQELDLSKEAILY-----DRSSREKDWLAVIT 73
R V +FV TWN L F + LY + S ++W +
Sbjct: 21 FPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRL- 79
Query: 74 KCLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMSSG---DLGNKGGVAIR 130
ETL +Y + + + M +F+R + + ++ +++ + KG + I
Sbjct: 80 --QETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGIS 137
Query: 131 FELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKEND-----------KLIPDHD 179
F + T FI SHF S V R D+ + + N + D
Sbjct: 138 FTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFD 197
Query: 180 LIFWFGDLNYRFDKLSRDSVIELINRK 206
+FWFGD N+R R V L+ +
Sbjct: 198 EVFWFGDFNFRLS-GGRTVVDALLCQG 223
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} SCOP:
d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Length = 282
Score = 133 bits (336), Expect = 1e-38
Identities = 32/195 (16%), Positives = 66/195 (33%), Gaps = 28/195 (14%)
Query: 33 VKIFVGTWN------------YLIPFSQE------LDLSKEAILYDRSSREKDWLAVITK 74
+ + +WN L S E + + D+ + +
Sbjct: 7 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQS 66
Query: 75 CLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKD-RMSSGDLGNKGGVAIRFEL 133
L + YT+++ + + ++ + L Q T ++ ++ D GG+ F +
Sbjct: 67 LLT--SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTI 124
Query: 134 YRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDLNYRFDK 193
Y F S + +V + N + + K D +FW GDLN R +
Sbjct: 125 YNKRFSFTTSRMSDE--DVTSTNTKY----AYDTRLDYSKKDDPSDFLFWIGDLNVRVE- 177
Query: 194 LSRDSVIELINRKEI 208
+ L+++ I
Sbjct: 178 TNATHAKSLVDQNNI 192
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 22/186 (11%), Positives = 58/186 (31%), Gaps = 36/186 (19%)
Query: 31 RLVKIFVGTWNYLIPFSQELDLSKEAILYDRSSREKDWLAVITKCLETLPENYTQVEAIR 90
++ + TW+ + + D+ + +I L L R
Sbjct: 335 ESIRDGLATWDNW-----------KHVNCDKLTT------IIESSLNVLEPAE-----YR 372
Query: 91 MLGIMMVIFVRDSFLSQIT------NIDKD--RMSSGDLGNKGGVAIRFELYRTGICFIC 142
+ + +F + + I ++ K + L V + + I I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 143 SHFASHINNVEARNADFKNILNQIHFK---ENDKLIPDHDLIFWFGDLNYRFDKLSRDSV 199
+ N A + ++I++ + ++D LIP + +++ + + +
Sbjct: 433 LELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 200 IELINR 205
+ L
Sbjct: 490 MTLFRM 495
Score = 35.2 bits (80), Expect = 0.011
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 71/251 (28%)
Query: 6 YEHIFNNGVITYQPDKSQK-------LNKSNKRLVKIFVGTW---NY---LIPFSQE-LD 51
+HI D L + +V+ FV NY + P E
Sbjct: 51 IDHIIM------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 52 LSKEAILY----DRS------------SREKDWLAVITKCLETL-PENYTQVEAIRMLGI 94
S +Y DR SR + +L + + L L P ++ +LG
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDG--VLGS 161
Query: 95 ---MMVIFV-RDSFLSQITNIDKDRMSSG----DLGNKGGVAIRFE----LYRTGICFIC 142
+ + V + + +M +L N E L
Sbjct: 162 GKTWVALDVCLSYKV-------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 143 SHFASHINNVEARNADFKNILNQIHFKENDK----LIPDH--DLIFW--FGDLNYRFDKL 194
S + H +N++ R + L ++ K L+ + + W F +L+ +
Sbjct: 215 SR-SDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLT 271
Query: 195 SRD-SVIELIN 204
+R V + ++
Sbjct: 272 TRFKQVTDFLS 282
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.4 bits (65), Expect = 0.76
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 130 RFELYRTGICFICSHFASHINNVEARNADFKNIL-----NQIHFKENDKLIPDHDLIFWF 184
G +++ ++ +R +N+L +I+F+ + P L W+
Sbjct: 125 NRYKSIDGSDETKANWMRYVV--ISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWY 182
Query: 185 GD 186
+
Sbjct: 183 SE 184
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Length = 306
Score = 29.3 bits (65), Expect = 0.87
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 113 KDRMSSGDLGNKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQ---IHFK 169
+L NKG V + + + I +H + +++ + + NQ I
Sbjct: 120 AKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE-DSMCGKTSPASVRTNQLKEIQDF 178
Query: 170 ENDKLIPDHDLIFWFGDLN 188
+K IP+++ + GD+N
Sbjct: 179 IKNKNIPNNEYVLIGGDMN 197
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 28.9 bits (64), Expect = 1.2
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 97 VIFVRDSFLSQITNIDKDRMSSGDLGNKGGVAIRFELYRTGICFICSHFASHINNVEARN 156
+ + + + +I + + L NKG ++ I +H + + +
Sbjct: 104 AVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDT 163
Query: 157 ADFKNI--LNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKE 207
+ + +I K IP ++IF GDLN + +++L+N
Sbjct: 164 SRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSS 216
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5,
subtype, thermophilic, thermophIle, endoglucanase; 1.12A
{Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Length = 305
Score = 28.0 bits (62), Expect = 2.5
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 144 HFASHINNVEARNADFKNILNQI--HFKENDKLIPD 177
++ + N++ + +DF+ + F N +I D
Sbjct: 94 NYGRYYNSIISSPSDFETFWKTVASQFASNPLVIFD 129
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B*
1d8e_B* ...
Length = 437
Score = 27.5 bits (60), Expect = 3.9
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 72 ITKCLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRM 116
+ + L L + Y ++A R ++ + I I +
Sbjct: 82 LKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDV 126
>3dra_B Geranylgeranyltransferase type I beta subunit;
geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
prenyltransferase, farnesyltransferase; HET: B3P GRG;
1.80A {Candida albicans}
Length = 390
Score = 27.5 bits (60), Expect = 4.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 72 ITKCLETLPENYTQVEAIRMLGI 94
+CL LP ++ ++ I
Sbjct: 13 FNRCLIGLPSTAQSEDSNKLAII 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 4.7
Identities = 36/191 (18%), Positives = 53/191 (27%), Gaps = 83/191 (43%)
Query: 7 EHIF---NNG----VITYQPDKSQKLNKSNKRLVKIFV--GTWNYLIPFSQE-------- 49
+ + NG V++ P Q L N L K G IPFS+
Sbjct: 364 KQVEISLVNGAKNLVVSGPP---QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 50 -----------LDLSKEAILYDRSSREKDW----LAV---------------------IT 73
L + + I D + + + I
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 74 KCLETLP---ENYTQVEAIRML----GIMMVIFVRDSFLSQITNIDKD----RM------ 116
C+ LP E TQ +A +L G S L +T+ +KD R+
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPG-------GASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 117 ---SSGDLGNK 124
D G K
Sbjct: 534 DINPDDDYGFK 544
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 26.6 bits (59), Expect = 6.2
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 32 LVKIFVGTWNYLIPFSQELDLSKEAILYDRSSREKDWLAV---ITKCLETLPENY 83
+V FV ++Y +L K L ++ E DW T +P NY
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNY 55
>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
rossman fold and helix B (MTAC); HET: B13; 2.50A
{Methanosarcina barkeri}
Length = 461
Score = 26.5 bits (58), Expect = 8.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 62 SSREKDWLAVITKCLETLPEN 82
S E LA LE LP++
Sbjct: 415 SRFETKALADAKAALEALPDD 435
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP
778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B*
3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 26.4 bits (57), Expect = 9.2
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 72 ITKCLETLPENYTQVEAIRMLGIM 95
+ LP + ++A R +
Sbjct: 70 LASSFFQLPGKFVSLDASRPWLVF 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.417
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,208,540
Number of extensions: 183579
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 24
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.2 bits)