RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11370
         (208 letters)



>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 345

 Score =  109 bits (273), Expect = 3e-29
 Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 34/219 (15%)

Query: 21  KSQKLNKSNKRLVKIFVGTWN------------------------YLIPFSQEL-DLSKE 55
           + ++   S  + VKIFV ++N                        Y++ F QE+  L+ +
Sbjct: 13  RKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGF-QEIVQLTPQ 71

Query: 56  AILYDRSSREKDWLAVITKCL---ETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNID 112
            ++    ++ ++W + + + L    T    Y Q+ + +++G  ++IF ++S L  I N++
Sbjct: 72  QVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVE 131

Query: 113 KDRMSSGDLG---NKGGVAIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFK 169
                +G  G   NKG VAIRF+   TG+CFI SH A+   N + R+ D++ I + + F+
Sbjct: 132 GTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFR 191

Query: 170 ENDKLIPDHDLIFWFGDLNYRFDKLSRDSVIELINRKEI 208
                I +HD + WFGD NYR   L+ + V+  I + ++
Sbjct: 192 RGRS-IFNHDYVVWFGDFNYRIS-LTYEEVVPCIAQGKL 228


>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
           lectularius) [TaxId: 79782]}
          Length = 280

 Score = 61.6 bits (148), Expect = 4e-12
 Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 39/183 (21%)

Query: 33  VKIFVGTWN------------------------YLIPFSQELDLSKEAILYDRSSREKDW 68
           + +   +WN                          +   Q      +        +    
Sbjct: 5   LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAV-QGFGFQTDKPQ-----QGPAC 58

Query: 69  LAVITKCLETLPENYTQVEAIRMLGIMMVIFVRDSFLSQITNIDKDRMS-SGDLGNKGGV 127
           +      L    + YT+++      + + ++  +  L Q T  ++  +    D    GG+
Sbjct: 59  VKNFQSLLT--SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGI 116

Query: 128 AIRFELYRTGICFICSHFASHINNVEARNADFKNILNQIHFKENDKLIPDHDLIFWFGDL 187
              F +Y     F  S  +            +   L+              D +FW GDL
Sbjct: 117 VTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKK------DDPSDFLFWIGDL 170

Query: 188 NYR 190
           N R
Sbjct: 171 NVR 173


>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
           {Bacillus cereus [TaxId: 1396]}
          Length = 299

 Score = 29.2 bits (63), Expect = 0.36
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 96  MVIFVRDSFLSQITNIDKDRMSSGDLGNKGGVAIRFELYRTGICFICSHFASHINNVEAR 155
           + I  +     +I  +        +L NKG V  + +     +  I +H  +  +     
Sbjct: 97  VAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKT 156

Query: 156 NADFK--NILNQIHFKENDKLIPDHDLIFWFGDLNYRFDKLS 195
           +      N L +I     +K IP+++ +   GD+N       
Sbjct: 157 SPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAE 198


>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 346

 Score = 28.0 bits (62), Expect = 0.87
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 72 ITKCLETLPENYTQVEAIRMLGI 94
            +CL+ LPE Y+ +E  R+   
Sbjct: 12 FQRCLQVLPERYSSLETSRLTIA 34


>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria
           meningitidis [TaxId: 487]}
          Length = 173

 Score = 25.7 bits (56), Expect = 3.6
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 102 DSFLSQITNIDKDRMSSGDLGNKGGVAIRFELYRTGICFICSHFAS---HINNVEARNAD 158
           DSF   I  +  +       G    V I  ++  TGI     H  S      ++  R+  
Sbjct: 31  DSFDFVIGRLGPEAAIPDLSGESCEVVIDGQIVMTGIIGSQRHGKSKGSRELSLSGRDLA 90

Query: 159 FKNILNQ 165
              +   
Sbjct: 91  GFLVDCS 97


>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
          beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 25.0 bits (54), Expect = 7.0
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 72 ITKCLETLPENYTQVEAIRM 91
          + + L  L + Y  ++A R 
Sbjct: 62 LKRGLRQLTDAYECLDASRP 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 796,971
Number of extensions: 36323
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)