BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11373
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DV2|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
Length = 201
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 119 KLCKKYPNVDTSVFIGGQVVGVNPKINNME-------------PGYK 152
+L KKYP+V IGG +V PK N+E PGYK
Sbjct: 91 QLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYK 137
>pdb|2QTM|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTM|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|3E27|A Chain A, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|B Chain B, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|C Chain C, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|D Chain D, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
Length = 189
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 119 KLCKKYPNVDTSVFIGGQVVGVNPKINNME-------------PGYK 152
+L KKYP+V IGG +V PK N+E PGYK
Sbjct: 91 QLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYK 137
>pdb|2QTR|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|C Chain C, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
Length = 189
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 119 KLCKKYPNVDTSVFIGGQVVGVNPKINNME-------------PGYK 152
+L KKYP+V IGG +V PK N+E PGYK
Sbjct: 91 QLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYK 137
>pdb|3HFJ|A Chain A, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3HFJ|B Chain B, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3MLA|A Chain A, Banadd In Complex With Inhibitor 1_02
pdb|3MLA|B Chain B, Banadd In Complex With Inhibitor 1_02
pdb|3MLB|A Chain A, Banadd In Complex With Inhibitor 1_02_1
pdb|3MLB|B Chain B, Banadd In Complex With Inhibitor 1_02_1
pdb|3MMX|A Chain A, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|B Chain B, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|C Chain C, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|D Chain D, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|E Chain E, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|F Chain F, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|G Chain G, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|H Chain H, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
Length = 191
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 119 KLCKKYPNVDTSVFIGGQVVGVNPKINNME 148
+L KKYP+V IGG +V PK N+E
Sbjct: 93 QLTKKYPDVQFHFIIGGDMVEYLPKWYNIE 122
>pdb|1UF2|K Chain K, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 506
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 160 LISDSGIRMKEDTLLDMVNHLKPGVGL 186
L++DS I M D +LD + KPGV L
Sbjct: 386 LVTDSNISMLHDKILDTITSNKPGVVL 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,983,009
Number of Sequences: 62578
Number of extensions: 665590
Number of successful extensions: 1610
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1603
Number of HSP's gapped (non-prelim): 10
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)