Query psy11373
Match_columns 539
No_of_seqs 351 out of 3211
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:44:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03472 HpnI hopanoid biosyn 100.0 7.6E-49 1.6E-53 410.8 41.3 330 67-516 38-373 (373)
2 KOG2547|consensus 100.0 6.5E-47 1.4E-51 370.9 22.2 389 19-516 37-428 (431)
3 PRK14583 hmsR N-glycosyltransf 100.0 4.3E-36 9.2E-41 321.4 40.7 224 67-403 72-298 (444)
4 TIGR03469 HonB hopene-associat 100.0 2.5E-36 5.5E-41 317.3 34.4 240 65-408 35-285 (384)
5 PRK11204 N-glycosyltransferase 100.0 8.3E-36 1.8E-40 317.5 37.9 225 66-403 50-277 (420)
6 cd02520 Glucosylceramide_synth 100.0 6.5E-36 1.4E-40 285.1 20.7 194 70-404 1-195 (196)
7 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 4E-33 8.6E-38 297.9 33.9 236 64-403 43-284 (439)
8 TIGR03030 CelA cellulose synth 100.0 2.2E-32 4.8E-37 307.1 35.6 230 66-403 127-375 (713)
9 PRK11498 bcsA cellulose syntha 100.0 8.1E-32 1.8E-36 301.0 37.8 227 66-404 256-487 (852)
10 PF13641 Glyco_tranf_2_3: Glyc 100.0 6.8E-35 1.5E-39 283.8 8.5 226 70-403 1-227 (228)
11 cd06437 CESA_CaSu_A2 Cellulose 100.0 7.6E-33 1.7E-37 270.7 22.1 224 70-403 1-230 (232)
12 COG1215 Glycosyltransferases, 100.0 1.2E-32 2.7E-37 294.3 23.1 222 69-403 53-282 (439)
13 PRK14716 bacteriophage N4 adso 100.0 1.5E-30 3.3E-35 278.2 37.3 226 66-403 62-321 (504)
14 cd06427 CESA_like_2 CESA_like_ 100.0 4.4E-31 9.6E-36 260.0 22.4 221 70-403 1-228 (241)
15 PRK05454 glucosyltransferase M 100.0 6.2E-29 1.4E-33 274.5 40.8 239 66-403 120-374 (691)
16 cd04191 Glucan_BSP_ModH Glucan 100.0 5.2E-31 1.1E-35 260.7 21.3 225 72-404 1-250 (254)
17 cd06421 CESA_CelA_like CESA_Ce 100.0 9.6E-31 2.1E-35 255.1 20.5 223 70-403 1-228 (234)
18 cd06435 CESA_NdvC_like NdvC_li 100.0 4.6E-30 9.9E-35 251.3 19.7 221 73-404 1-227 (236)
19 cd04192 GT_2_like_e Subfamily 100.0 4.3E-29 9.3E-34 242.3 19.6 221 74-403 1-228 (229)
20 PRK11234 nfrB bacteriophage N4 100.0 1.8E-27 3.9E-32 264.2 32.1 229 65-404 58-327 (727)
21 cd06434 GT2_HAS Hyaluronan syn 100.0 1.9E-28 4E-33 239.5 19.6 219 71-404 1-231 (235)
22 cd04190 Chitin_synth_C C-termi 100.0 6.5E-29 1.4E-33 245.3 13.7 217 74-404 1-240 (244)
23 cd06439 CESA_like_1 CESA_like_ 100.0 2E-27 4.2E-32 234.9 23.1 222 63-404 22-247 (251)
24 PRK15489 nfrB bacteriophage N4 99.9 2.1E-25 4.6E-30 244.7 34.1 228 66-403 67-334 (703)
25 PF13506 Glyco_transf_21: Glyc 99.9 2.8E-27 6.1E-32 221.2 16.2 169 125-403 1-175 (175)
26 cd02525 Succinoglycan_BP_ExoA 99.9 6.3E-25 1.4E-29 215.7 23.2 225 71-406 1-228 (249)
27 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 3.8E-25 8.3E-30 224.9 14.6 112 73-189 1-118 (299)
28 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 1.5E-23 3.2E-28 199.8 16.6 115 70-189 1-119 (202)
29 cd04195 GT2_AmsE_like GT2_AmsE 99.9 1.7E-23 3.7E-28 199.4 16.3 115 73-193 1-120 (201)
30 PLN02726 dolichyl-phosphate be 99.9 1.8E-22 3.8E-27 199.2 23.5 121 67-190 6-129 (243)
31 cd06913 beta3GnTL1_like Beta 1 99.9 2.5E-22 5.3E-27 194.6 20.1 116 74-189 1-119 (219)
32 cd06436 GlcNAc-1-P_transferase 99.9 1.5E-22 3.3E-27 192.3 15.0 129 74-209 1-145 (191)
33 cd04196 GT_2_like_d Subfamily 99.9 2.4E-22 5.1E-27 192.8 15.1 116 73-192 1-118 (214)
34 cd06438 EpsO_like EpsO protein 99.9 1.7E-22 3.7E-27 190.3 13.1 125 74-206 1-133 (183)
35 cd04185 GT_2_like_b Subfamily 99.9 4.2E-22 9E-27 190.2 15.6 110 74-189 1-114 (202)
36 cd06442 DPM1_like DPM1_like re 99.9 1.1E-21 2.5E-26 189.9 18.6 113 74-191 1-115 (224)
37 cd06433 GT_2_WfgS_like WfgS an 99.9 5E-22 1.1E-26 188.0 15.6 113 73-193 1-115 (202)
38 cd02522 GT_2_like_a GT_2_like_ 99.9 1.7E-21 3.6E-26 188.3 16.9 104 72-187 1-105 (221)
39 cd06420 GT2_Chondriotin_Pol_N 99.9 8.3E-21 1.8E-25 177.8 18.1 113 74-189 1-113 (182)
40 cd04186 GT_2_like_c Subfamily 99.9 2.9E-21 6.2E-26 177.1 14.6 108 74-189 1-110 (166)
41 PF03142 Chitin_synth_2: Chiti 99.9 5.8E-20 1.3E-24 195.5 25.3 356 65-529 20-518 (527)
42 PRK10073 putative glycosyl tra 99.9 1E-20 2.2E-25 194.6 16.4 115 69-189 5-120 (328)
43 cd02526 GT2_RfbF_like RfbF is 99.8 9.3E-21 2E-25 185.3 13.8 199 74-390 1-208 (237)
44 cd04188 DPG_synthase DPG_synth 99.8 1.2E-19 2.6E-24 174.7 18.4 113 74-190 1-118 (211)
45 cd06423 CESA_like CESA_like is 99.8 2.3E-20 4.9E-25 171.2 12.2 119 74-196 1-121 (180)
46 PRK10063 putative glycosyl tra 99.8 4.7E-19 1E-23 175.3 19.8 113 70-189 1-117 (248)
47 PRK10018 putative glycosyl tra 99.8 1E-18 2.2E-23 175.4 18.7 117 68-189 3-121 (279)
48 PTZ00260 dolichyl-phosphate be 99.8 1.7E-17 3.7E-22 170.9 28.3 122 67-191 67-202 (333)
49 COG1216 Predicted glycosyltran 99.8 2.6E-19 5.6E-24 182.7 13.8 215 69-387 2-221 (305)
50 PRK10714 undecaprenyl phosphat 99.8 2.8E-17 6E-22 168.9 27.8 119 69-191 5-126 (325)
51 PF00535 Glycos_transf_2: Glyc 99.8 2.6E-19 5.5E-24 163.7 7.5 112 73-189 1-113 (169)
52 PF10111 Glyco_tranf_2_2: Glyc 99.8 4.1E-18 8.8E-23 171.8 15.8 104 73-178 1-111 (281)
53 cd04179 DPM_DPG-synthase_like 99.8 7E-18 1.5E-22 158.2 16.1 165 74-264 1-173 (185)
54 cd04187 DPM1_like_bac Bacteria 99.8 4.8E-18 1E-22 159.3 14.5 167 74-267 1-170 (181)
55 TIGR01556 rhamnosyltran L-rham 99.8 6.1E-18 1.3E-22 170.4 15.0 102 78-189 2-110 (281)
56 PF13632 Glyco_trans_2_3: Glyc 99.8 1.2E-17 2.5E-22 158.6 15.8 141 158-405 1-143 (193)
57 PRK13915 putative glucosyl-3-p 99.7 7.9E-17 1.7E-21 163.9 18.5 118 68-189 29-152 (306)
58 COG2943 MdoH Membrane glycosyl 99.7 2.3E-15 5E-20 154.6 28.6 231 67-404 141-395 (736)
59 PLN02893 Cellulose synthase-li 99.7 2.3E-15 4.9E-20 164.5 24.5 183 141-404 280-493 (734)
60 KOG2978|consensus 99.7 5.1E-15 1.1E-19 133.7 17.1 120 70-192 3-126 (238)
61 cd00761 Glyco_tranf_GTA_type G 99.6 1.4E-14 3E-19 129.4 15.6 111 74-189 1-113 (156)
62 COG0463 WcaA Glycosyltransfera 99.6 3.6E-14 7.8E-19 132.6 12.8 106 69-180 2-107 (291)
63 PLN02195 cellulose synthase A 99.5 4E-13 8.7E-18 149.4 20.4 48 356-403 670-719 (977)
64 cd02511 Beta4Glucosyltransfera 99.5 2.2E-13 4.7E-18 133.2 13.6 96 71-180 1-96 (229)
65 PLN02189 cellulose synthase 99.5 8.3E-12 1.8E-16 139.8 26.8 49 355-403 734-784 (1040)
66 PLN02638 cellulose synthase A 99.4 3.7E-11 7.9E-16 135.1 26.5 49 355-403 773-823 (1079)
67 PLN02248 cellulose synthase-li 99.4 5.6E-11 1.2E-15 133.6 24.1 49 355-403 832-882 (1135)
68 PLN02436 cellulose synthase A 99.3 4.6E-10 9.9E-15 126.0 28.1 49 355-403 789-839 (1094)
69 PLN02190 cellulose synthase-li 99.3 3.5E-10 7.7E-15 123.6 22.7 50 355-404 455-506 (756)
70 KOG3738|consensus 99.3 3.4E-12 7.3E-17 127.5 4.9 217 67-381 121-342 (559)
71 KOG2571|consensus 99.2 9.1E-10 2E-14 121.9 23.2 156 143-404 426-596 (862)
72 KOG3736|consensus 99.2 3E-12 6.4E-17 137.2 2.4 223 66-383 138-366 (578)
73 PLN02400 cellulose synthase 99.2 4.4E-09 9.5E-14 118.7 26.4 49 355-403 778-828 (1085)
74 KOG3737|consensus 99.2 2.4E-11 5.1E-16 121.2 5.7 111 66-180 151-265 (603)
75 KOG2977|consensus 99.1 1.1E-09 2.4E-14 105.8 14.4 104 71-178 68-183 (323)
76 PLN02915 cellulose synthase A 99.1 3.5E-08 7.7E-13 111.2 26.3 49 355-403 737-787 (1044)
77 cd02514 GT13_GLCNAC-TI GT13_GL 98.8 3.5E-08 7.7E-13 100.7 12.7 114 72-190 2-137 (334)
78 PF03552 Cellulose_synt: Cellu 98.7 5.2E-08 1.1E-12 106.6 8.4 49 355-403 419-469 (720)
79 PF13712 Glyco_tranf_2_5: Glyc 98.6 3.7E-07 8.1E-12 88.4 10.5 87 72-188 1-90 (217)
80 cd00899 b4GalT Beta-4-Galactos 97.9 9.6E-05 2.1E-09 70.9 11.5 76 71-174 3-85 (219)
81 PF13704 Glyco_tranf_2_4: Glyc 97.7 0.00029 6.3E-09 58.8 9.0 84 79-169 1-85 (97)
82 PF03452 Anp1: Anp1; InterPro 97.3 0.004 8.6E-08 61.6 13.5 118 65-183 20-170 (269)
83 PF03071 GNT-I: GNT-I family; 97.3 0.0011 2.5E-08 69.6 9.8 121 68-189 91-230 (434)
84 KOG3588|consensus 97.2 0.0043 9.3E-08 62.7 12.5 109 67-180 226-338 (494)
85 COG4092 Predicted glycosyltran 97.2 0.012 2.7E-07 57.0 14.9 104 70-178 2-117 (346)
86 TIGR03472 HpnI hopanoid biosyn 97.0 0.062 1.3E-06 56.5 18.9 34 243-276 199-232 (373)
87 PF05679 CHGN: Chondroitin N-a 96.9 0.018 3.9E-07 62.8 14.9 113 68-183 245-369 (499)
88 KOG3916|consensus 96.9 0.0032 6.9E-08 63.2 7.7 45 333-377 260-305 (372)
89 PRK14583 hmsR N-glycosyltransf 96.9 0.018 3.9E-07 62.0 14.1 58 243-307 229-303 (444)
90 PRK11204 N-glycosyltransferase 96.6 0.22 4.7E-06 53.1 20.4 57 243-306 208-281 (420)
91 PF11316 Rhamno_transf: Putati 96.3 0.014 3E-07 57.1 7.8 89 86-180 45-139 (234)
92 PF09488 Osmo_MPGsynth: Mannos 96.2 0.057 1.2E-06 54.9 11.9 113 71-189 51-199 (381)
93 PF06306 CgtA: Beta-1,4-N-acet 96.0 0.023 4.9E-07 56.8 7.8 99 71-173 88-193 (347)
94 TIGR02460 osmo_MPGsynth mannos 96.0 0.085 1.8E-06 53.4 11.8 97 71-172 51-176 (381)
95 PRK14503 mannosyl-3-phosphogly 96.0 0.085 1.8E-06 53.7 11.8 105 71-180 52-188 (393)
96 PF02709 Glyco_transf_7C: N-te 95.9 0.0032 6.9E-08 50.5 1.2 51 331-381 17-68 (78)
97 PRK14502 bifunctional mannosyl 94.5 0.35 7.6E-06 54.0 11.8 105 71-180 56-192 (694)
98 cd06437 CESA_CaSu_A2 Cellulose 94.4 0.019 4.1E-07 55.6 1.7 52 243-296 161-214 (232)
99 TIGR03111 glyc2_xrt_Gpos1 puta 94.3 2 4.3E-05 46.2 17.0 52 243-296 214-268 (439)
100 PF13641 Glyco_tranf_2_3: Glyc 93.2 0.049 1.1E-06 52.4 2.1 53 243-297 158-212 (228)
101 cd06435 CESA_NdvC_like NdvC_li 93.0 0.07 1.5E-06 51.7 2.8 50 244-295 158-209 (236)
102 PRK14716 bacteriophage N4 adso 92.5 1.1 2.3E-05 49.0 11.3 39 68-107 93-131 (504)
103 PF13506 Glyco_transf_21: Glyc 92.4 0.063 1.4E-06 50.1 1.5 35 243-277 100-134 (175)
104 PF13632 Glyco_trans_2_3: Glyc 91.7 0.12 2.7E-06 48.3 2.7 53 243-296 71-125 (193)
105 cd02510 pp-GalNAc-T pp-GalNAc- 91.6 0.14 3.1E-06 51.8 3.2 50 243-296 170-226 (299)
106 KOG1413|consensus 91.3 2.3 5E-05 43.4 11.1 122 67-189 64-206 (411)
107 PF13733 Glyco_transf_7N: N-te 91.2 0.58 1.2E-05 41.4 6.1 73 70-171 47-127 (136)
108 COG1215 Glycosyltransferases, 90.9 0.089 1.9E-06 56.1 0.8 38 241-285 211-248 (439)
109 PF11735 CAP59_mtransfer: Cryp 90.8 2.1 4.6E-05 42.0 10.2 115 74-189 4-146 (241)
110 KOG4179|consensus 90.2 0.51 1.1E-05 48.8 5.4 109 70-179 3-134 (568)
111 cd04191 Glucan_BSP_ModH Glucan 89.8 0.23 4.9E-06 49.3 2.7 48 243-290 170-226 (254)
112 PF02434 Fringe: Fringe-like; 89.3 0.91 2E-05 45.0 6.5 38 154-191 85-122 (252)
113 KOG2547|consensus 89.2 1 2.2E-05 46.2 6.7 165 67-280 110-280 (431)
114 PRK11498 bcsA cellulose syntha 89.1 0.16 3.4E-06 58.7 1.0 35 244-285 418-452 (852)
115 TIGR03030 CelA cellulose synth 89.0 0.27 5.9E-06 56.2 2.8 62 244-307 307-380 (713)
116 cd06421 CESA_CelA_like CESA_Ce 88.5 0.31 6.7E-06 46.8 2.5 46 243-295 159-211 (234)
117 PF01762 Galactosyl_T: Galacto 88.2 2.7 5.8E-05 39.7 8.7 95 84-180 5-105 (195)
118 COG1216 Predicted glycosyltran 88.2 0.35 7.5E-06 49.3 2.8 48 244-296 167-221 (305)
119 PF03214 RGP: Reversibly glyco 88.1 0.43 9.2E-06 48.3 3.1 97 71-180 9-116 (348)
120 PF09258 Glyco_transf_64: Glyc 87.6 4.3 9.3E-05 40.1 10.0 98 72-180 1-100 (247)
121 PF05060 MGAT2: N-acetylglucos 87.6 3.3 7.1E-05 42.8 9.3 51 69-119 30-81 (356)
122 cd02540 GT2_GlmU_N_bac N-termi 86.9 5.5 0.00012 38.2 10.3 93 75-180 20-115 (229)
123 cd06427 CESA_like_2 CESA_like_ 85.8 0.43 9.2E-06 46.5 1.8 32 243-276 160-191 (241)
124 PF01644 Chitin_synth_1: Chiti 85.8 13 0.00029 34.1 11.2 45 133-180 115-163 (163)
125 PF10111 Glyco_tranf_2_2: Glyc 84.8 13 0.00027 37.4 11.9 38 244-285 168-205 (281)
126 cd04182 GT_2_like_f GT_2_like_ 84.6 6.4 0.00014 36.1 9.2 89 80-180 24-116 (186)
127 PF12804 NTP_transf_3: MobA-li 84.6 10 0.00022 34.0 10.3 90 76-180 19-111 (160)
128 COG2068 Uncharacterized MobA-r 83.8 26 0.00056 33.3 12.5 93 80-183 29-125 (199)
129 COG1213 Predicted sugar nucleo 83.6 4.7 0.0001 39.1 7.7 91 81-179 30-120 (239)
130 KOG1476|consensus 83.3 19 0.00041 36.4 11.9 103 69-176 86-202 (330)
131 TIGR03202 pucB xanthine dehydr 83.2 13 0.00029 34.6 10.7 93 80-180 24-121 (190)
132 PF02709 Glyco_transf_7C: N-te 82.8 1.3 2.8E-05 35.5 3.0 40 242-285 17-56 (78)
133 PRK11234 nfrB bacteriophage N4 82.6 26 0.00056 40.2 14.4 40 67-107 89-128 (727)
134 cd06915 NTP_transferase_WcbM_l 82.4 10 0.00022 35.9 9.8 96 75-180 23-119 (223)
135 cd02520 Glucosylceramide_synth 82.1 0.71 1.5E-05 43.4 1.5 47 248-294 128-176 (196)
136 PF11397 GlcNAc: Glycosyltrans 81.9 4.3 9.3E-05 42.1 7.3 120 72-195 2-159 (343)
137 PF04666 Glyco_transf_54: N-Ac 81.9 13 0.00028 37.7 10.6 111 69-180 51-194 (297)
138 PLN03180 reversibly glycosylat 81.7 11 0.00024 38.5 9.8 25 147-171 85-109 (346)
139 cd06422 NTP_transferase_like_1 80.5 7.6 0.00017 37.1 8.2 96 75-179 24-120 (221)
140 TIGR03469 HonB hopene-associat 80.2 0.82 1.8E-05 48.2 1.4 32 244-275 209-240 (384)
141 cd00218 GlcAT-I Beta1,3-glucur 79.1 28 0.0006 33.7 11.2 102 70-178 1-118 (223)
142 TIGR03310 matur_ygfJ molybdenu 79.0 16 0.00035 33.7 9.6 90 80-180 23-115 (188)
143 cd04192 GT_2_like_e Subfamily 78.9 1.6 3.5E-05 41.5 2.8 32 243-274 154-185 (229)
144 PRK13385 2-C-methyl-D-erythrit 77.3 14 0.0003 35.8 8.9 92 80-180 28-123 (230)
145 PRK15489 nfrB bacteriophage N4 77.2 57 0.0012 37.3 14.7 42 67-109 97-138 (703)
146 PRK05450 3-deoxy-manno-octulos 77.2 25 0.00055 34.0 10.9 91 80-180 25-116 (245)
147 cd04181 NTP_transferase NTP_tr 77.0 17 0.00036 34.3 9.3 94 76-180 24-119 (217)
148 cd02503 MobA MobA catalyzes th 76.4 21 0.00046 32.7 9.6 84 80-180 24-109 (181)
149 cd04183 GT2_BcE_like GT2_BcbE_ 76.1 28 0.0006 33.4 10.7 97 75-179 23-121 (231)
150 TIGR00466 kdsB 3-deoxy-D-manno 75.9 39 0.00084 33.0 11.7 96 80-189 22-123 (238)
151 TIGR01173 glmU UDP-N-acetylglu 72.4 19 0.00042 38.5 9.4 100 75-187 22-124 (451)
152 cd06425 M1P_guanylylT_B_like_N 72.3 18 0.00039 34.9 8.4 98 75-180 25-124 (233)
153 cd06436 GlcNAc-1-P_transferase 72.1 2.5 5.3E-05 39.6 2.1 30 243-272 162-191 (191)
154 PF07507 WavE: WavE lipopolysa 71.6 17 0.00036 37.2 8.0 99 80-180 17-120 (311)
155 cd02526 GT2_RfbF_like RfbF is 70.7 2.7 6E-05 40.3 2.1 48 244-296 151-205 (237)
156 PLN02458 transferase, transfer 69.0 1E+02 0.0023 31.6 12.7 104 70-178 112-225 (346)
157 cd02518 GT2_SpsF SpsF is a gly 68.9 68 0.0015 30.8 11.6 102 75-187 18-121 (233)
158 cd06438 EpsO_like EpsO protein 68.8 2.3 4.9E-05 39.3 1.1 29 243-274 154-182 (183)
159 PRK14353 glmU bifunctional N-a 68.0 32 0.0007 36.8 9.9 94 75-180 27-124 (446)
160 TIGR02665 molyb_mobA molybdopt 67.3 63 0.0014 29.7 10.6 86 80-180 25-113 (186)
161 cd02516 CDP-ME_synthetase CDP- 67.0 87 0.0019 29.5 11.8 96 75-180 22-121 (218)
162 cd02523 PC_cytidylyltransferas 67.0 18 0.00039 34.7 7.0 92 75-179 23-116 (229)
163 COG1211 IspD 4-diphosphocytidy 66.5 41 0.0009 32.8 9.2 103 80-192 30-137 (230)
164 cd06428 M1P_guanylylT_A_like_N 65.8 40 0.00087 33.1 9.4 98 75-180 25-126 (257)
165 PF02348 CTP_transf_3: Cytidyl 65.6 57 0.0012 30.8 10.2 88 81-180 23-114 (217)
166 cd06431 GT8_LARGE_C LARGE cata 65.4 44 0.00095 33.6 9.6 99 72-171 3-113 (280)
167 PLN03153 hypothetical protein; 65.1 22 0.00048 38.6 7.6 31 154-184 209-239 (537)
168 cd04194 GT8_A4GalT_like A4GalT 65.0 42 0.00091 32.7 9.3 97 74-171 3-111 (248)
169 cd04190 Chitin_synth_C C-termi 64.9 3.7 8.1E-05 40.1 1.8 24 98-121 72-95 (244)
170 cd02517 CMP-KDO-Synthetase CMP 64.7 1.1E+02 0.0023 29.5 12.0 88 80-180 24-115 (239)
171 TIGR03584 PseF pseudaminic aci 64.0 74 0.0016 30.6 10.6 96 80-184 22-125 (222)
172 PRK14355 glmU bifunctional N-a 63.5 96 0.0021 33.4 12.5 94 75-180 25-121 (459)
173 PRK09382 ispDF bifunctional 2- 63.2 53 0.0012 34.6 10.1 101 80-191 31-132 (378)
174 PF01501 Glyco_transf_8: Glyco 63.2 21 0.00046 34.3 6.7 88 83-170 12-113 (250)
175 PRK00317 mobA molybdopterin-gu 62.7 65 0.0014 29.9 9.8 86 80-180 28-114 (193)
176 TIGR01556 rhamnosyltran L-rham 62.1 5.2 0.00011 39.8 2.2 45 246-295 150-201 (281)
177 PRK00155 ispD 2-C-methyl-D-ery 60.8 87 0.0019 29.9 10.6 91 80-180 29-121 (227)
178 PF11051 Mannosyl_trans3: Mann 60.7 66 0.0014 32.1 9.9 96 73-175 3-112 (271)
179 cd02513 CMP-NeuAc_Synthase CMP 60.1 81 0.0017 29.8 10.2 93 80-180 24-123 (223)
180 cd04189 G1P_TT_long G1P_TT_lon 59.8 78 0.0017 30.3 10.1 94 75-180 25-121 (236)
181 PF02364 Glucan_synthase: 1,3- 58.5 18 0.0004 41.4 5.9 103 71-177 191-307 (817)
182 cd02524 G1P_cytidylyltransfera 58.2 46 0.001 32.5 8.2 102 75-180 23-141 (253)
183 cd02522 GT_2_like_a GT_2_like_ 57.7 8.7 0.00019 36.2 2.9 28 244-273 136-163 (221)
184 PRK13368 3-deoxy-manno-octulos 57.3 1.4E+02 0.003 28.6 11.4 88 80-180 25-114 (238)
185 cd00505 Glyco_transf_8 Members 57.2 1.1E+02 0.0025 29.7 10.8 98 80-179 11-118 (246)
186 PF00483 NTP_transferase: Nucl 56.9 60 0.0013 31.3 8.8 96 75-180 24-126 (248)
187 cd04184 GT2_RfbC_Mx_like Myxoc 56.8 9.3 0.0002 35.4 2.9 29 244-273 149-177 (202)
188 PRK14360 glmU bifunctional N-a 56.0 1.1E+02 0.0023 32.7 11.3 94 75-180 23-119 (450)
189 PRK14354 glmU bifunctional N-a 55.4 81 0.0018 33.8 10.2 92 75-180 24-118 (458)
190 cd02509 GDP-M1P_Guanylyltransf 55.4 94 0.002 31.0 10.0 86 75-169 26-116 (274)
191 PRK14357 glmU bifunctional N-a 54.9 81 0.0018 33.7 10.1 91 75-180 22-114 (448)
192 cd06434 GT2_HAS Hyaluronan syn 54.1 3.2 6.9E-05 39.8 -0.9 54 243-296 151-214 (235)
193 PLN03133 beta-1,3-galactosyltr 53.9 2.4E+02 0.0051 31.9 13.4 90 99-189 418-509 (636)
194 PF09949 DUF2183: Uncharacteri 53.7 43 0.00093 28.1 6.0 40 85-127 51-91 (100)
195 PF05045 RgpF: Rhamnan synthes 53.5 2.2E+02 0.0048 31.2 13.1 115 68-189 263-404 (498)
196 PF13896 Glyco_transf_49: Glyc 53.2 46 0.00099 34.1 7.4 35 146-180 118-152 (317)
197 PRK14356 glmU bifunctional N-a 52.3 1.2E+02 0.0027 32.4 11.0 89 80-180 31-123 (456)
198 PLN02917 CMP-KDO synthetase 51.4 2.3E+02 0.0051 28.5 12.2 98 71-180 47-161 (293)
199 PF02485 Branch: Core-2/I-Bran 50.8 77 0.0017 30.7 8.4 113 72-189 1-124 (244)
200 TIGR01207 rmlA glucose-1-phosp 50.5 1.3E+02 0.0028 30.3 10.1 97 74-180 23-122 (286)
201 PRK14352 glmU bifunctional N-a 49.4 2.1E+02 0.0045 31.0 12.3 95 75-180 26-124 (482)
202 PRK14358 glmU bifunctional N-a 49.0 1.2E+02 0.0025 33.1 10.2 92 75-180 29-124 (481)
203 PLN03193 beta-1,3-galactosyltr 48.8 3.6E+02 0.0078 28.7 14.5 80 99-180 177-261 (408)
204 PRK02726 molybdopterin-guanine 48.5 66 0.0014 30.3 7.3 86 80-180 31-118 (200)
205 PF01128 IspD: 2-C-methyl-D-er 48.0 52 0.0011 31.9 6.5 100 80-192 26-130 (221)
206 cd02541 UGPase_prokaryotic Pro 47.2 1.6E+02 0.0034 28.9 10.1 100 75-180 25-145 (267)
207 PRK15480 glucose-1-phosphate t 46.1 2.2E+02 0.0047 28.8 10.9 96 75-180 28-126 (292)
208 cd06913 beta3GnTL1_like Beta 1 46.0 13 0.00027 35.3 1.9 28 248-275 160-187 (219)
209 PRK14489 putative bifunctional 45.9 1.9E+02 0.004 30.3 10.8 95 80-187 30-126 (366)
210 TIGR00453 ispD 2-C-methyl-D-er 45.8 1.1E+02 0.0025 28.8 8.6 90 80-180 25-116 (217)
211 cd04195 GT2_AmsE_like GT2_AmsE 45.4 10 0.00023 35.1 1.2 31 243-275 149-179 (201)
212 cd06426 NTP_transferase_like_2 45.3 93 0.002 29.3 7.9 94 75-180 23-118 (220)
213 cd04186 GT_2_like_c Subfamily 45.3 18 0.00039 31.9 2.7 52 244-295 112-165 (166)
214 cd04198 eIF-2B_gamma_N The N-t 44.5 2.4E+02 0.0053 26.6 10.6 95 75-180 25-124 (214)
215 PRK15171 lipopolysaccharide 1, 44.3 2.7E+02 0.0058 28.8 11.5 116 70-187 24-153 (334)
216 PHA01631 hypothetical protein 43.6 32 0.00069 31.5 3.9 68 99-171 17-87 (176)
217 TIGR01099 galU UTP-glucose-1-p 43.3 1.6E+02 0.0035 28.7 9.4 100 75-180 25-145 (260)
218 PF04724 Glyco_transf_17: Glyc 43.1 1.7E+02 0.0037 30.5 9.8 26 154-179 177-202 (356)
219 PLN02728 2-C-methyl-D-erythrit 42.4 1.4E+02 0.003 29.5 8.7 100 82-191 52-154 (252)
220 PF01697 Glyco_transf_92: Glyc 42.3 1.9E+02 0.0042 28.4 9.9 104 72-180 3-132 (285)
221 KOG2287|consensus 41.5 4.3E+02 0.0092 27.5 13.6 119 70-189 95-222 (349)
222 PF10138 vWA-TerF-like: vWA fo 41.2 1.6E+02 0.0034 28.1 8.3 99 80-180 84-187 (200)
223 TIGR00454 conserved hypothetic 41.1 2.2E+02 0.0047 26.5 9.4 88 80-180 25-114 (183)
224 cd06430 GT8_like_2 GT8_like_2 41.1 4.1E+02 0.0088 27.1 12.5 98 72-170 3-111 (304)
225 TIGR03552 F420_cofC 2-phospho- 41.1 2.4E+02 0.0052 26.1 9.8 39 143-181 76-117 (195)
226 cd02538 G1P_TT_short G1P_TT_sh 40.3 2.2E+02 0.0048 27.3 9.8 96 76-180 26-123 (240)
227 COG1209 RfbA dTDP-glucose pyro 39.6 2.5E+02 0.0054 28.2 9.7 95 75-180 25-122 (286)
228 PF01755 Glyco_transf_25: Glyc 39.3 3.1E+02 0.0067 25.4 10.3 106 74-180 5-110 (200)
229 cd06423 CESA_like CESA_like is 39.2 9.1 0.0002 33.7 -0.3 23 243-265 153-175 (180)
230 PRK09451 glmU bifunctional N-a 39.1 2.9E+02 0.0063 29.6 11.3 93 75-180 27-121 (456)
231 cd02508 ADP_Glucose_PP ADP-glu 38.1 1.5E+02 0.0032 27.7 7.9 97 75-180 23-134 (200)
232 TIGR01105 galF UTP-glucose-1-p 37.7 2.8E+02 0.0062 28.0 10.3 99 75-180 28-154 (297)
233 KOG0799|consensus 37.5 3.8E+02 0.0083 28.9 11.7 105 71-180 104-218 (439)
234 COG3967 DltE Short-chain dehyd 34.8 65 0.0014 31.0 4.6 52 73-130 31-82 (245)
235 TIGR01208 rmlA_long glucose-1- 34.4 2.1E+02 0.0045 29.5 9.0 95 75-180 24-121 (353)
236 TIGR02623 G1P_cyt_trans glucos 34.1 3.9E+02 0.0085 26.0 10.5 99 75-180 24-141 (254)
237 PRK13660 hypothetical protein; 33.2 2.6E+02 0.0057 26.2 8.4 100 86-188 32-135 (182)
238 cd06432 GT8_HUGT1_C_like The C 32.9 2.6E+02 0.0057 27.4 8.9 97 80-178 11-117 (248)
239 KOG1022|consensus 32.8 1.3E+02 0.0028 32.9 6.8 102 68-180 441-544 (691)
240 PF14979 TMEM52: Transmembrane 31.2 2E+02 0.0044 25.8 6.8 38 68-105 60-98 (154)
241 cd04185 GT_2_like_b Subfamily 31.1 46 0.00099 30.8 3.1 47 245-296 122-174 (202)
242 COG3162 Predicted membrane pro 30.7 2.8E+02 0.0061 23.2 7.0 20 384-403 8-27 (102)
243 PF03808 Glyco_tran_WecB: Glyc 30.5 4.3E+02 0.0093 24.2 10.8 103 80-189 32-134 (172)
244 cd01132 F1_ATPase_alpha F1 ATP 30.4 2.5E+02 0.0054 28.2 8.2 91 89-180 87-184 (274)
245 KOG0916|consensus 30.0 51 0.0011 39.9 3.7 103 71-177 964-1083(1679)
246 PF13684 Dak1_2: Dihydroxyacet 29.5 1.1E+02 0.0024 31.3 5.8 62 75-136 242-303 (313)
247 PF04277 OAD_gamma: Oxaloaceta 29.4 2.1E+02 0.0045 22.4 6.2 26 25-50 7-32 (79)
248 PLN03183 acetylglucosaminyltra 29.4 7.3E+02 0.016 26.6 17.0 115 68-188 76-208 (421)
249 PLN02331 phosphoribosylglycina 28.6 5.3E+02 0.011 24.6 10.8 97 74-176 2-99 (207)
250 cd06433 GT_2_WfgS_like WfgS an 28.4 49 0.0011 30.0 2.8 22 244-265 142-163 (202)
251 cd01461 vWA_interalpha_trypsin 28.2 4.2E+02 0.0091 23.4 9.0 63 100-166 101-164 (171)
252 COG1861 SpsF Spore coat polysa 27.6 5.7E+02 0.012 24.9 9.6 104 75-189 22-127 (241)
253 COG0746 MobA Molybdopterin-gua 27.1 4E+02 0.0087 25.1 8.7 85 79-180 26-112 (192)
254 cd01977 Nitrogenase_VFe_alpha 27.1 1.7E+02 0.0038 31.0 7.0 53 79-132 69-126 (415)
255 COG1442 RfaJ Lipopolysaccharid 26.7 4.7E+02 0.01 26.9 9.7 100 73-172 4-114 (325)
256 PF03360 Glyco_transf_43: Glyc 26.5 82 0.0018 30.2 3.9 76 98-178 9-100 (207)
257 TIGR01860 VNFD nitrogenase van 26.2 6E+02 0.013 27.5 11.0 54 79-133 108-166 (461)
258 PRK14359 glmU bifunctional N-a 25.5 5E+02 0.011 27.3 10.3 90 75-178 24-116 (430)
259 PRK10122 GalU regulator GalF; 24.2 7.4E+02 0.016 24.9 11.3 99 75-180 28-154 (297)
260 PF06415 iPGM_N: BPG-independe 24.0 6.1E+02 0.013 24.6 9.4 80 129-208 30-122 (223)
261 COG1519 KdtA 3-deoxy-D-manno-o 23.0 7.4E+02 0.016 26.5 10.4 108 67-189 47-154 (419)
262 COG1207 GlmU N-acetylglucosami 22.9 9.6E+02 0.021 25.8 11.1 87 83-180 31-121 (460)
263 cd02507 eIF-2B_gamma_N_like Th 22.6 5.2E+02 0.011 24.4 8.8 92 75-177 25-123 (216)
264 COG1208 GCD1 Nucleoside-diphos 22.2 4.3E+02 0.0094 27.5 8.7 94 76-180 27-122 (358)
265 KOG1478|consensus 22.2 3E+02 0.0065 27.5 6.8 61 70-132 31-95 (341)
266 cd04196 GT_2_like_d Subfamily 22.1 69 0.0015 29.6 2.6 23 244-266 152-174 (214)
267 cd04197 eIF-2B_epsilon_N The N 21.8 4.2E+02 0.009 25.0 8.0 98 75-180 25-127 (217)
268 KOG2264|consensus 21.2 1.6E+02 0.0035 32.3 5.1 89 71-171 650-740 (907)
269 TIGR01284 alt_nitrog_alph nitr 21.0 8.6E+02 0.019 26.2 11.0 53 79-132 106-163 (457)
270 PRK13389 UTP--glucose-1-phosph 20.5 6.7E+02 0.014 25.3 9.5 100 75-180 33-159 (302)
271 TIGR01101 V_ATP_synt_F vacuola 20.3 1.7E+02 0.0037 25.3 4.3 62 83-149 46-107 (115)
272 PF00535 Glycos_transf_2: Glyc 20.3 5.4E+02 0.012 21.8 10.9 78 102-183 2-80 (169)
273 PF03552 Cellulose_synt: Cellu 20.3 1.1E+02 0.0025 34.8 4.0 55 141-195 182-246 (720)
No 1
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=7.6e-49 Score=410.81 Aligned_cols=330 Identities=22% Similarity=0.368 Sum_probs=252.8
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhh
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~a 146 (539)
...|+||||||+|||+++|++||+|+++|+||++|||++||+|+|+|.++++++++++|+.+++++..+++.|.|+|.+|
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~ 117 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSN 117 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHH
Confidence 44789999999999999999999999999999999999999999999999999999999988887778888999999999
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccC
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIP 225 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (539)
++++++++++|+++++|||+.++|++|+++++.+ ++++|+|++.+...+.+++.++++....+....
T Consensus 118 l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~------------ 185 (373)
T TIGR03472 118 LINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFL------------ 185 (373)
T ss_pred HHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhh------------
Confidence 9999999999999999999999999999999999 889999999655555566766665543321000
Q ss_pred cCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchh
Q psy11373 226 CHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGF 305 (539)
Q Consensus 226 ~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~ 305 (539)
|.
T Consensus 186 --------------------------------------------------------------~~---------------- 187 (373)
T TIGR03472 186 --------------------------------------------------------------PS---------------- 187 (373)
T ss_pred --------------------------------------------------------------HH----------------
Confidence 00
Q ss_pred hhhhhhhhcccchhHHHHHhhhcc-ccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccc
Q psy11373 306 AAALEKTYFGTAQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQ 384 (539)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~ 384 (539)
.......+ ..+..|+++++||++|+++|||++..+.++||++++.+++++|+++.+.+.++.+
T Consensus 188 ----------------~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~ 251 (373)
T TIGR03472 188 ----------------VMVARALGRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDT 251 (373)
T ss_pred ----------------HHHHHhccCCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhc
Confidence 00001111 1335699999999999999999998888999999999999999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhhh----hhccchhHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Q psy11373 385 NSGYCDVTSFRNRLSRWVKLRIAMAPFTL----VCEPLSECLILGAFASWAASFLFQIDPAVFYLVHILAWFLLDAILIS 460 (539)
Q Consensus 385 ~~~~~s~~~~~~qr~RW~r~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (539)
+..+++++++++||.||.|..+...+... ++.++.+.++...+ ...+.+. +.++.+++++++...+.+
T Consensus 252 ~~~~~s~~~~~~q~~RW~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~ 323 (373)
T TIGR03472 252 DVHETSFATLLAHELRWSRTIRAVNPVGYAGSFITQPVPLAVLALLL-------GAAWAWP-LVAAALAARALLRLVMSR 323 (373)
T ss_pred CCCccCHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998776555321 22222222211111 0001010 111122333333333333
Q ss_pred HHhhCCCCCchhHHHHHHHHHHhhhHHHHHHHHhCCceEecCceeEeecCCceeec
Q psy11373 461 IIQNGSLPFSKFHLIVCWLFREVLGPWVFFTSIWNPVIKWRTRTYKLRWGELTNTD 516 (539)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~Wrg~~~~v~~~~~~~~~ 516 (539)
... .+.. ..++.++++++.+++|+.++++++|+||||+|++++||++.++
T Consensus 324 ~~~-----~~~~-~~~l~pl~~~l~~~~~~~~~~~~~v~WrGr~y~~~~~g~~~~~ 373 (373)
T TIGR03472 324 ATG-----APLR-AAWLLPLRDLLSFAIWVASFFGSRVVWRGRRFRVDRDGRLSPV 373 (373)
T ss_pred Hhc-----cchh-hhHHHHHHHHHHHHHHHHHHhCCeEEECCcEEEeCCCCccCCC
Confidence 321 1221 2356789999999999999999999999999999999998753
No 2
>KOG2547|consensus
Probab=100.00 E-value=6.5e-47 Score=370.90 Aligned_cols=389 Identities=50% Similarity=0.877 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCcEEEEEecCCChhhHHHHHHHHHcCCCC
Q psy11373 19 SLSSLTYTLSGFAVFFFVFWFGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTILKPLTGTDPNLYSNLETFFTMSYP 98 (539)
Q Consensus 19 ~~~~~~~~i~~~~~~~~i~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp 98 (539)
-|..+..-+.+++.+..+++..+++.+.++++|.+++.+++.++. +..|.||||.|..+-++++.++++|....+|+
T Consensus 37 g~~~l~~~l~~~a~~g~vf~~~l~~~h~ia~~Y~~y~lh~ks~~~---~~LPgVSiikPl~G~d~nl~~Nlesffts~Y~ 113 (431)
T KOG2547|consen 37 GMGWLLAELDGFAVFGFVFVLVLYLVHIIAFCYGRYRLHKKSKPD---PKLPGVSIIKPLKGVDPNLYHNLESFFTSQYH 113 (431)
T ss_pred HHHHHHHHhhhheeeEeehhhHHHHHHHHHHHHHHHHhhccccCC---CCCCCceEEeecccCCchhHHhHHHHHhhccC
Confidence 456666666777888889999999999999999999999886543 36899999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHH
Q psy11373 99 KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 99 ~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~ 178 (539)
++|+++|.++++|++.++++++.++||+++.+++..++..|.|+|.||+--|++.|++|+|++.|+|..+.||.+-.|+.
T Consensus 114 ~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t 193 (431)
T KOG2547|consen 114 KYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMAT 193 (431)
T ss_pred ceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHH
Q psy11373 179 HL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIF 256 (539)
Q Consensus 179 ~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~ 256 (539)
.+ .++.|+|++.|+..+++++.
T Consensus 194 ~M~shekmalvtq~py~~dr~Gf~-------------------------------------------------------- 217 (431)
T KOG2547|consen 194 TMMSHEKMALVTQTPYCKDRQGFD-------------------------------------------------------- 217 (431)
T ss_pred hhhcccceeeecCCceeeccccch--------------------------------------------------------
Confidence 99 58899999988887776643
Q ss_pred HHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccc
Q psy11373 257 DELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGM 336 (539)
Q Consensus 257 ~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~ 336 (539)
+.+++.|++++|+|.|..+|.+|..|..|.
T Consensus 218 --------------------------------------------------atle~~~fgTsh~r~yl~~n~~~~~c~tgm 247 (431)
T KOG2547|consen 218 --------------------------------------------------ATLEQVYFGTSHPRIYLSGNVLGFNCSTGM 247 (431)
T ss_pred --------------------------------------------------hhhhheeeccCCceEEEccccccccccccH
Confidence 344555666889999999999999999999
Q ss_pred hhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy11373 337 STLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDVTSFRNRLSRWVKLRIAMAPFTLVCE 416 (539)
Q Consensus 337 ~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~~~~~~s~~~~~~qr~RW~r~~~~~~~~~~~~~ 416 (539)
+.++||+++++.||+..+..+++||+..++.+...||+..++..+..++.+..+...|.+|..||.+.|..+.|...+++
T Consensus 248 s~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist~palQnSas~~mssf~~Ri~rwvkLriaM~Paiii~e 327 (431)
T KOG2547|consen 248 SSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAISTHPALQNSASVTMSSFLDRIIRWVKLRIAMMPAIIIVE 327 (431)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHHHHHhhhhhhhcCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhhhHHHHHHHHhC
Q psy11373 417 PLSECLILGAFASWAASFLFQ-IDPAVFYLVHILAWFLLDAILISIIQNGSLPFSKFHLIVCWLFREVLGPWVFFTSIWN 495 (539)
Q Consensus 417 p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 495 (539)
|++.|...+.+.+|+...+.+ +....++++|.++|+..|+.+.+..+.+...++...+.+.|++|+...+..+..|++.
T Consensus 328 pLs~c~~~~~i~afs~p~~~~~~l~iy~~llH~I~w~~~dyml~~~mq~gt~~f~~~e~~~i~~~r~~~~~~~~~sal~n 407 (431)
T KOG2547|consen 328 PLSECFPSGLIIAFSAPELVRLFLIIYFFLLHVIIWFHSDYMLLSGMQPGTLVFSKLEFYVIWLLRESTIFYNFLSALWN 407 (431)
T ss_pred hHhhhchHHHHHHHhhhhhhhhHHHHHHHHHHhheeEeccHHHhccCCCccccccccceeeeeccccchHHHHHHHHHcC
Confidence 999999888888888877777 6677788999999999999999999988888888888999999999999999999999
Q ss_pred CceEecCceeEeecCCceeec
Q psy11373 496 PVIKWRTRTYKLRWGELTNTD 516 (539)
Q Consensus 496 ~~v~Wrg~~~~v~~~~~~~~~ 516 (539)
..++|+...|+...+|++...
T Consensus 408 ~~fn~et~~~~~~~~~~~~~~ 428 (431)
T KOG2547|consen 408 PHFNWETPLYLLHVGGSAWES 428 (431)
T ss_pred CccccccceEEEEecceEEee
Confidence 999999999999999987653
No 3
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=4.3e-36 Score=321.44 Aligned_cols=224 Identities=17% Similarity=0.205 Sum_probs=190.1
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhh
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~a 146 (539)
...|.|||+||+|||++.+++||+|+++|+||++||+++||+|+|+|.++++++.+++|++ +++..+++.| |++|
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v--~vv~~~~n~G---ka~A 146 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRL--RVIHLAHNQG---KAIA 146 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCE--EEEEeCCCCC---HHHH
Confidence 4568999999999999999999999999999999999999999999999999998888876 4455566666 9999
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhcccc
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQI 224 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
+|.|++.+++||++++|||+.++||+++++++.+ ++++|+|++.+...+.+++.++.+..++.+.....
T Consensus 147 lN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~--------- 217 (444)
T PRK14583 147 LRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLI--------- 217 (444)
T ss_pred HHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999998 78999999988777777777776655443111000
Q ss_pred CcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccch
Q psy11373 225 PCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKG 304 (539)
Q Consensus 225 ~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~ 304 (539)
T Consensus 218 -------------------------------------------------------------------------------- 217 (444)
T PRK14583 218 -------------------------------------------------------------------------------- 217 (444)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhcccchhHHHHHhhhcc-ccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeeccccc
Q psy11373 305 FAAALEKTYFGTAQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAW 383 (539)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~ 383 (539)
.......| ..+..|+++++||++++++||++ .+.++||.+++.+++++||++.+.|++.+
T Consensus 218 -----------------~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~--~~~i~ED~dl~~rl~~~G~~i~~~p~a~~ 278 (444)
T PRK14583 218 -----------------KRTQRVYGQVFTVSGVVAAFRRRALADVGYWS--PDMITEDIDISWKLQLKHWSVFFEPRGLC 278 (444)
T ss_pred -----------------HHHHHHhCCceEecCceeEEEHHHHHHcCCCC--CCcccccHHHHHHHHHcCCeEEEeeccEE
Confidence 00001112 24456999999999999999998 44689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy11373 384 QNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 384 ~~~~~~s~~~~~~qr~RW~r 403 (539)
.++.|++++++++||.||++
T Consensus 279 ~~~~p~t~~~~~~Qr~RW~~ 298 (444)
T PRK14583 279 WILMPETLRGLWKQRLRWAQ 298 (444)
T ss_pred eeeCCCCHHHHHHHHHHHhC
Confidence 99999999999999999987
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=100.00 E-value=2.5e-36 Score=317.31 Aligned_cols=240 Identities=18% Similarity=0.262 Sum_probs=181.1
Q ss_pred CCCCCCcEEEEEecCCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCCc-eEEEEec-CcccCcc
Q psy11373 65 QEMPYPGVTILKPLTGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPNV-DTSVFIG-GQVVGVN 141 (539)
Q Consensus 65 ~~~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~~-~~~~~~~-~~~~g~~ 141 (539)
+++..|+||||||+|||++.|++||+|+.+|+|| ++|||||||+|+|+|.++++++.+++|.. +++++.. +.+.|.+
T Consensus 35 ~~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 35 SPEAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCc
Confidence 3456789999999999999999999999999999 69999999999999999999998888732 3444433 3466888
Q ss_pred hhhhhHHHHHHhcC-----CcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHH-HHHhcchhHH
Q psy11373 142 PKINNMEPGYKAAK-----YELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALE-KTYFGTAQAR 214 (539)
Q Consensus 142 ~K~~al~~g~~~a~-----~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (539)
+|..|+|.|++.++ +|+++++|+|+.++|++++++++.+ ++++++|++.+.... .++..+.. ..+.. ....
T Consensus 115 Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~-~~~~~~~~~~~~~~-~~~~ 192 (384)
T TIGR03469 115 GKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC-ESFWEKLLIPAFVF-FFQK 192 (384)
T ss_pred chHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC-CCHHHHHHHHHHHH-HHHH
Confidence 89999999999999 9999999999999999999999999 677888887554433 23333221 11000 0000
Q ss_pred HHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceec
Q psy11373 215 IYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVH 294 (539)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~ 294 (539)
.+ |-
T Consensus 193 ~~-----------------------------------------------------------------------~~----- 196 (384)
T TIGR03469 193 LY-----------------------------------------------------------------------PF----- 196 (384)
T ss_pred hc-----------------------------------------------------------------------ch-----
Confidence 00 00
Q ss_pred ccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCc
Q psy11373 295 QMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWK 374 (539)
Q Consensus 295 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~r 374 (539)
.|. .. .........|+++++||++++++|||++....+.||.+++.+++++|++
T Consensus 197 ----~~~-------------~~---------~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~ 250 (384)
T TIGR03469 197 ----RWV-------------ND---------PRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGR 250 (384)
T ss_pred ----hhh-------------cC---------CCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCc
Confidence 000 00 0001233569999999999999999999888899999999999999999
Q ss_pred eeeeccccc-ccCCCCCHHHHHHHHHHHHHHHHHH
Q psy11373 375 ITISGQPAW-QNSGYCDVTSFRNRLSRWVKLRIAM 408 (539)
Q Consensus 375 i~~~~~~~~-~~~~~~s~~~~~~qr~RW~r~~~~~ 408 (539)
+.+...... .....++++++++|+.||.......
T Consensus 251 v~~~~~~~~~s~r~~~~~~~~~~~~~r~~~~~~~~ 285 (384)
T TIGR03469 251 IWLGLAARTRSLRPYDGLGEIWRMIARTAYTQLRY 285 (384)
T ss_pred EEEEecCceEEEEecCCHHHHHHHHHHhHHHHcCC
Confidence 999755433 3334568999999999997765443
No 5
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=8.3e-36 Score=317.52 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=190.5
Q ss_pred CCCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhh
Q psy11373 66 EMPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKIN 145 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~ 145 (539)
....|+|||+||+|||++.+++|++|+.+|+||++||+++||+|+|+|.++++++.+++|++ +++..+++.| |++
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v--~~i~~~~n~G---ka~ 124 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRL--RVIHLAENQG---KAN 124 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcE--EEEEcCCCCC---HHH
Confidence 34578999999999999999999999999999999999999999999999999998888865 4455566777 999
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccc
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQ 223 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (539)
|+|.|++.+++||++++|+|+.++||+|+++++.+ ++++++|+|.+...+.+++.++.+..++.+....
T Consensus 125 aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~--------- 195 (420)
T PRK11204 125 ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGL--------- 195 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhH---------
Confidence 99999999999999999999999999999999999 8899999998777777666666665444311000
Q ss_pred cCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccc
Q psy11373 224 IPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRK 303 (539)
Q Consensus 224 ~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~ 303 (539)
T Consensus 196 -------------------------------------------------------------------------------- 195 (420)
T PRK11204 196 -------------------------------------------------------------------------------- 195 (420)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhcccchhHHHHHhhhcc-ccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccc
Q psy11373 304 GFAAALEKTYFGTAQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPA 382 (539)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~ 382 (539)
.....+..| ..+..|+++++||++++++||++. +.++||.+++.+++++||++.+.|++.
T Consensus 196 -----------------~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~--~~~~ED~~l~~rl~~~G~~i~~~p~~~ 256 (420)
T PRK11204 196 -----------------IKRAQRVYGRVFTVSGVITAFRKSALHEVGYWST--DMITEDIDISWKLQLRGWDIRYEPRAL 256 (420)
T ss_pred -----------------HHHHHHHhCCceEecceeeeeeHHHHHHhCCCCC--CcccchHHHHHHHHHcCCeEEeccccE
Confidence 000001112 245669999999999999999984 467899999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q psy11373 383 WQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 383 ~~~~~~~s~~~~~~qr~RW~r 403 (539)
+.++.|++++++++||.||.+
T Consensus 257 ~~~~~p~t~~~~~~Qr~RW~~ 277 (420)
T PRK11204 257 CWILMPETLKGLWKQRLRWAQ 277 (420)
T ss_pred EEeECcccHHHHHHHHHHHhc
Confidence 999999999999999999998
No 6
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=100.00 E-value=6.5e-36 Score=285.13 Aligned_cols=194 Identities=48% Similarity=0.891 Sum_probs=174.4
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
|.||||||+|||++.|.+||+|+.+|+||++|||+|||+|+|+|.++++++.+++|+.+++++..+++.|.++|++|+|.
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 80 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIK 80 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999877766666777788889999999
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcCC
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHT 228 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
|++.+++||++++|+|+.++|++|+++++.+ ++++++|++. .
T Consensus 81 g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------~------------------- 123 (196)
T cd02520 81 GYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------C------------------- 123 (196)
T ss_pred HHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------c-------------------
Confidence 9999999999999999999999999999998 7888988873 0
Q ss_pred CCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhhh
Q psy11373 229 GCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAA 308 (539)
Q Consensus 229 g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~~ 308 (539)
T Consensus 124 -------------------------------------------------------------------------------- 123 (196)
T cd02520 124 -------------------------------------------------------------------------------- 123 (196)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccccCCC
Q psy11373 309 LEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGY 388 (539)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~~~~~ 388 (539)
..|+++++||++++++|||+.+...++||++++.++.++|+++.+.+.++++++.+
T Consensus 124 ------------------------~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~ 179 (196)
T cd02520 124 ------------------------AFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGS 179 (196)
T ss_pred ------------------------ccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCc
Confidence 11666777777777777777666677999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy11373 389 CDVTSFRNRLSRWVKL 404 (539)
Q Consensus 389 ~s~~~~~~qr~RW~r~ 404 (539)
.+++++++||.||.|.
T Consensus 180 ~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 180 TSLASFWRRQLRWSRT 195 (196)
T ss_pred ccHHHHHHHHHHHhcc
Confidence 9999999999999874
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=4e-33 Score=297.85 Aligned_cols=236 Identities=14% Similarity=0.242 Sum_probs=177.5
Q ss_pred CCCCCCCcEEEEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcc
Q psy11373 64 PQEMPYPGVTILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVN 141 (539)
Q Consensus 64 ~~~~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~ 141 (539)
.++...|.||||||+|||++.+.+||+|+.+|+||+ +||++|||+|+|+|.++++++++++|++.+. ..+++.|
T Consensus 43 ~~~~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~--~~~~~~G-- 118 (439)
T TIGR03111 43 KFIGKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLR--YMNSDQG-- 118 (439)
T ss_pred CCcCCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEE--EeCCCCC--
Confidence 344678999999999999999999999999999995 7999999999999999999998888876543 3344555
Q ss_pred hhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhh
Q psy11373 142 PKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAA 219 (539)
Q Consensus 142 ~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (539)
|+.|+|.|++.+++||++++|+|+.++||+++++++.| ++++++++|..... .+. .......... +.
T Consensus 119 -ka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~-~~~-~~~~~~~~~~------~~-- 187 (439)
T TIGR03111 119 -KAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTD-KEL-IEKTKGRFLK------LI-- 187 (439)
T ss_pred -HHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecC-chh-hhhhcchhhh------Hh--
Confidence 99999999999999999999999999999999999999 67899888844321 111 0000000000 00
Q ss_pred hccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccc
Q psy11373 220 NFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFT 299 (539)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~ 299 (539)
++.
T Consensus 188 --------------------------------~~~--------------------------------------------- 190 (439)
T TIGR03111 188 --------------------------------RRC--------------------------------------------- 190 (439)
T ss_pred --------------------------------HHh---------------------------------------------
Confidence 000
Q ss_pred cccchhhhhhhhhhcccchhHHHHHhhhcc-ccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHH-cCCceee
Q psy11373 300 WDRKGFAAALEKTYFGTAQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSE-LGWKITI 377 (539)
Q Consensus 300 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~-~G~ri~~ 377 (539)
.+.... +.++. .+ ......+ ..+..|+++++||++++++||++ .+.++||++++.++++ .|+++.+
T Consensus 191 ----~~~~y~-~~~l~---~r--~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~--~~~i~ED~~l~~rl~~~~g~kv~~ 258 (439)
T TIGR03111 191 ----EYFEYA-QAFLA---GR--NFESQVNSLFTLSGAFSAFRRETILKTQLYN--SETVGEDTDMTFQIRELLDGKVYL 258 (439)
T ss_pred ----HHHHHH-HHHHh---hh--HHHHhcCCeEEEccHHHhhhHHHHHHhCCCC--CCCcCccHHHHHHHHHhcCCeEEE
Confidence 000000 00000 00 0001111 23467999999999999999998 4568999999999975 6999999
Q ss_pred ecccccccCCCCCHHHHHHHHHHHHH
Q psy11373 378 SGQPAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 378 ~~~~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
.+++++.++++.+++++++||.||.|
T Consensus 259 ~~~a~~~~~~p~t~~~~~~QR~RW~r 284 (439)
T TIGR03111 259 CENAIFYVDPIDGLNKLYTQRQRWQR 284 (439)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999998
No 8
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=2.2e-32 Score=307.08 Aligned_cols=230 Identities=21% Similarity=0.298 Sum_probs=175.9
Q ss_pred CCCCCcEEEEEecCCChhhH-HHHHHHHHcCCCC--CeEEEEEeCCCCCCc--------------HHHHHHHHHhCCCce
Q psy11373 66 EMPYPGVTILKPLTGTDPNL-YSNLETFFTMSYP--KYEICFCLEDDVDPA--------------VPLVEKLCKKYPNVD 128 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~~l-~~~L~Sl~~q~yp--~~eIIvvdd~s~D~t--------------~~il~~l~~~~p~~~ 128 (539)
.+..|.|||+||+|||++++ ++|++++.+|+|| ++||+++||+|+|+| .+.+++++++. +
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~-~-- 203 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL-G-- 203 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc-C--
Confidence 45678999999999999876 6899999999999 599999999999987 34556666554 2
Q ss_pred EEEEecCcccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHH
Q psy11373 129 TSVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKT 206 (539)
Q Consensus 129 ~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~ 206 (539)
++++.++++.+ +|++|+|.|+++++|||++++|||+.++||+|++++..| ++++++|++.....+.+.+...+...
T Consensus 204 v~yi~r~~n~~--~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~ 281 (713)
T TIGR03030 204 VNYITRPRNVH--AKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTF 281 (713)
T ss_pred cEEEECCCCCC--CChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHH
Confidence 34455555554 499999999999999999999999999999999999998 78999999855444443221111100
Q ss_pred HhcchhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcc
Q psy11373 207 YFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHL 286 (539)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~ 286 (539)
... .. |
T Consensus 282 ~~~--~~---------------------------------------------------------e--------------- 287 (713)
T TIGR03030 282 RRM--PN---------------------------------------------------------E--------------- 287 (713)
T ss_pred HHh--hh---------------------------------------------------------H---------------
Confidence 000 00 0
Q ss_pred cCCcceecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHH
Q psy11373 287 KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFAR 366 (539)
Q Consensus 287 ~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~ 366 (539)
.+.+. ...+...+..+..+..|+++++||++++++|||+. +.++||++++.
T Consensus 288 -----------------------~~~f~----~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~--~~vtED~~l~~ 338 (713)
T TIGR03030 288 -----------------------NELFY----GLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG--ETVTEDAETAL 338 (713)
T ss_pred -----------------------HHHHH----HHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC--CCcCcHHHHHH
Confidence 00000 00011112223445679999999999999999984 56899999999
Q ss_pred HHHHcCCceeeecccccccCCCCCHHHHHHHHHHHHH
Q psy11373 367 ALSELGWKITISGQPAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 367 ~l~~~G~ri~~~~~~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
+++++||++.+.+++.+.+..|++++++++||.||++
T Consensus 339 rL~~~G~~~~y~~~~~~~g~~p~sl~~~~~Qr~RWa~ 375 (713)
T TIGR03030 339 KLHRRGWNSAYLDRPLIAGLAPETLSGHIGQRIRWAQ 375 (713)
T ss_pred HHHHcCCeEEEeccccccccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999997
No 9
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=8.1e-32 Score=300.97 Aligned_cols=227 Identities=16% Similarity=0.218 Sum_probs=173.9
Q ss_pred CCCCCcEEEEEecCCChhh-HHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcch
Q psy11373 66 EMPYPGVTILKPLTGTDPN-LYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNP 142 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~~-l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~ 142 (539)
.+..|.|||+||+|||+.. +++++.++++||||+ +||+++||+|+|++.++++++ + ++++.++++.| +
T Consensus 256 ~~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~-----~--v~yI~R~~n~~--g 326 (852)
T PRK11498 256 MSLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV-----G--VKYIARPTHEH--A 326 (852)
T ss_pred cCCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC-----C--cEEEEeCCCCc--c
Confidence 3457999999999999965 588999999999994 999999999999998887653 2 34455555444 3
Q ss_pred hhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhh
Q psy11373 143 KINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAAN 220 (539)
Q Consensus 143 K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (539)
|++|+|.|++.++|||++++|||+.++|++|++++..| +|++|+|++.....+.+.+...+... ...
T Consensus 327 KAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~-~~~---------- 395 (852)
T PRK11498 327 KAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRF-RKT---------- 395 (852)
T ss_pred hHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHH-hhc----------
Confidence 99999999999999999999999999999999999887 89999999855444443322111100 000
Q ss_pred ccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceeccccccc
Q psy11373 221 FLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTW 300 (539)
Q Consensus 221 ~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w 300 (539)
|+
T Consensus 396 -------------------------------------------------------------------~~----------- 397 (852)
T PRK11498 396 -------------------------------------------------------------------PN----------- 397 (852)
T ss_pred -------------------------------------------------------------------cc-----------
Confidence 00
Q ss_pred ccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecc
Q psy11373 301 DRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQ 380 (539)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~ 380 (539)
++ +.+. ...+...+..+..+..|+++++||++++++|||+. +.++||.+++.+++++||++.|.++
T Consensus 398 -e~-------~~fy----~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~--~titED~dlslRL~~~Gyrv~yl~~ 463 (852)
T PRK11498 398 -EG-------TLFY----GLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAV--ETVTEDAHTSLRLHRRGYTSAYMRI 463 (852)
T ss_pred -ch-------hHHH----HHHHhHHHhhcccccccceeeeEHHHHHHhcCCCC--CccCccHHHHHHHHHcCCEEEEEec
Confidence 00 0000 00001111222345679999999999999999994 4689999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHH
Q psy11373 381 PAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 381 ~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
+......+++++++++||.||++.
T Consensus 464 ~~a~glaPesl~~~~~QR~RWarG 487 (852)
T PRK11498 464 PQAAGLATESLSAHIGQRIRWARG 487 (852)
T ss_pred cceeEECCCCHHHHHHHHHHHHHH
Confidence 988899999999999999999983
No 10
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=100.00 E-value=6.8e-35 Score=283.84 Aligned_cols=226 Identities=23% Similarity=0.395 Sum_probs=160.3
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
|+|+||||+|||++.+.++|+|+++|+||++||+|+||+++|++.+.++++.+++|..+++++..+.+.|.++|..++|.
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999877777777776777789999999
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcCC
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHT 228 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
|++.+++|+++++|+|+.++|++|+++++.+ ++++++|++.....+.+++...++..++...
T Consensus 81 ~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------------- 143 (228)
T PF13641_consen 81 ALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARW----------------- 143 (228)
T ss_dssp HHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EE-----------------
T ss_pred HHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhh-----------------
Confidence 9999999999999999999999999999999 9999999986555544444332222111100
Q ss_pred CCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhhh
Q psy11373 229 GCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAA 308 (539)
Q Consensus 229 g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~~ 308 (539)
T Consensus 144 -------------------------------------------------------------------------------- 143 (228)
T PF13641_consen 144 -------------------------------------------------------------------------------- 143 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccccCCC
Q psy11373 309 LEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGY 388 (539)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~~~~~ 388 (539)
+..+.......+..++.|+++++||++++++|||+. ...+||.+++.+++++||++.+.|++.+++..+
T Consensus 144 ---------~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~ 212 (228)
T PF13641_consen 144 ---------HLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEP 212 (228)
T ss_dssp ---------TTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--S
T ss_pred ---------hhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCC
Confidence 000000001223456679999999999999999997 677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy11373 389 CDVTSFRNRLSRWVK 403 (539)
Q Consensus 389 ~s~~~~~~qr~RW~r 403 (539)
.+++++++||.||.+
T Consensus 213 ~~~~~~~~q~~RW~~ 227 (228)
T PF13641_consen 213 SSLKAFFKQRFRWSR 227 (228)
T ss_dssp SSTHHHHHHHHHHH-
T ss_pred CCHHHHHHHHhccCc
Confidence 999999999999975
No 11
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=7.6e-33 Score=270.69 Aligned_cols=224 Identities=21% Similarity=0.264 Sum_probs=174.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCC--CceEEEEecCcccCcchhhh
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYP--NVDTSVFIGGQVVGVNPKIN 145 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p--~~~~~~~~~~~~~g~~~K~~ 145 (539)
|.||||||+|||++.|.+||+|+.+|+||. +||||+|| |+|+|.++++++.++++ ..+++.+...++.|. |++
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~--k~~ 77 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGY--KAG 77 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCC--chH
Confidence 579999999999999999999999999984 79998887 99999999998876543 234454555555565 889
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecC-CCChHHHHHHHHhcchhHHHHHhhhccc
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWD-RKGFAAALEKTYFGTAQARIYLAANFLQ 223 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (539)
|+|.|++.+++|||+++|+|+.++|++|+++...+ ++++++|++.....+ .+++..+.+...+... +.
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~------ 147 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYH----FT------ 147 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhh----hh------
Confidence 99999999999999999999999999999988877 889999998443333 3445444433221100 00
Q ss_pred cCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccc
Q psy11373 224 IPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRK 303 (539)
Q Consensus 224 ~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~ 303 (539)
T Consensus 148 -------------------------------------------------------------------------------- 147 (232)
T cd06437 148 -------------------------------------------------------------------------------- 147 (232)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeeccccc
Q psy11373 304 GFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAW 383 (539)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~ 383 (539)
..+. .........++.|+++++||++++++|||+. ..++||++|+.|++++||++.+.|++.+
T Consensus 148 ------------~~~~---~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~--~~~~ED~~l~~rl~~~G~~~~~~~~~~v 210 (232)
T cd06437 148 ------------IEQV---ARSSTGLFFNFNGTAGVWRKECIEDAGGWNH--DTLTEDLDLSYRAQLKGWKFVYLDDVVV 210 (232)
T ss_pred ------------HhHh---hHhhcCCeEEeccchhhhhHHHHHHhCCCCC--CcchhhHHHHHHHHHCCCeEEEecccee
Confidence 0000 0000001123568889999999999999985 4578999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy11373 384 QNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 384 ~~~~~~s~~~~~~qr~RW~r 403 (539)
++..+.+++++++||.||.+
T Consensus 211 ~~~~~~~~~~~~~q~~rW~~ 230 (232)
T cd06437 211 PAELPASMSAYRSQQHRWSK 230 (232)
T ss_pred eeeCCcCHHHHHHHHHHhcc
Confidence 99999999999999999976
No 12
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-32 Score=294.29 Aligned_cols=222 Identities=23% Similarity=0.348 Sum_probs=184.7
Q ss_pred CCcEEEEEecCCChh-hHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCC-CceEEEEec-CcccCcchhhh
Q psy11373 69 YPGVTILKPLTGTDP-NLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYP-NVDTSVFIG-GQVVGVNPKIN 145 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~-~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p-~~~~~~~~~-~~~~g~~~K~~ 145 (539)
.|.|+|+||+|||++ .+++|++|+.+||||++||++|||+++|++.+++++..++++ ++++ ... .++.| |++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~g---K~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRV--IYPEKKNGG---KAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEE--EeccccCcc---chH
Confidence 599999999999999 899999999999999999999999999999999999998884 5533 222 34444 999
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCC---CChHHHHHHHHhcchhHHHHHhhhc
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDR---KGFAAALEKTYFGTAQARIYLAANF 221 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (539)
|+|.|++.+++|+++++|||+.++||+|.+++..| +++++++++.+...+. .++.++.+..++......
T Consensus 128 al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------- 200 (439)
T COG1215 128 ALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYF------- 200 (439)
T ss_pred HHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHH-------
Confidence 99999999999999999999999999999999999 6777777776665554 456666655544311100
Q ss_pred cccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccc
Q psy11373 222 LQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWD 301 (539)
Q Consensus 222 ~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~ 301 (539)
T Consensus 201 -------------------------------------------------------------------------------- 200 (439)
T COG1215 201 -------------------------------------------------------------------------------- 200 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhhhhhcccchhHHHHHhhhcc-ccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecc
Q psy11373 302 RKGFAAALEKTYFGTAQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQ 380 (539)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~ 380 (539)
+ .......| .....|++.++||++++++||+. ...++||.+++.+++.+||++.+.++
T Consensus 201 ------------------~-~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~--~~~i~ED~~lt~~l~~~G~~~~~~~~ 259 (439)
T COG1215 201 ------------------R-LRAASKGGLISFLSGSSSAFRRSALEEVGGWL--EDTITEDADLTLRLHLRGYRVVYVPE 259 (439)
T ss_pred ------------------h-hhhhhhcCCeEEEcceeeeEEHHHHHHhCCCC--CCceeccHHHHHHHHHCCCeEEEeec
Confidence 0 00111222 35677999999999999999888 56899999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHH
Q psy11373 381 PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 381 ~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
+.+.++.|++++++++||.||++
T Consensus 260 ~~~~~~~p~t~~~~~~Qr~RW~~ 282 (439)
T COG1215 260 AIVWTEAPETLKELWRQRLRWAR 282 (439)
T ss_pred ceEeeeCcccHHHHHHHHHHHHc
Confidence 99999999999999999999999
No 13
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=1.5e-30 Score=278.18 Aligned_cols=226 Identities=19% Similarity=0.195 Sum_probs=170.5
Q ss_pred CCCCCcEEEEEecCCChhhHHHHHHHH-HcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhh
Q psy11373 66 EMPYPGVTILKPLTGTDPNLYSNLETF-FTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKI 144 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~~l~~~L~Sl-~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~ 144 (539)
..+.|+++|+||+|||++.|.++|+|+ .+++||++||+|+||+|+|+|.+.++++++++|++++. . .++.|.++|+
T Consensus 62 ~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~v--v-~~~~gp~~Ka 138 (504)
T PRK14716 62 SVPEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLV--I-VPHDGPTSKA 138 (504)
T ss_pred cCCCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEE--E-eCCCCCCCHH
Confidence 345789999999999999999999996 46899999999999999999999999999999986442 3 2344567899
Q ss_pred hhHHHHHHhc------CC---cEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEeeceecCC--CChHHHHHHHHhcchhH
Q psy11373 145 NNMEPGYKAA------KY---ELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMPFTWDR--KGFAAALEKTYFGTAQA 213 (539)
Q Consensus 145 ~al~~g~~~a------~~---d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g~~~~~~~--~~~~~~~~~~~~~~~~~ 213 (539)
+|||.|++.+ +| |+++++|||+.++|++|+.+...+ ++.++|+......+. ..+.+.....++.
T Consensus 139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~---- 213 (504)
T PRK14716 139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVFSLPRDWGEWVAGTYMDEFA---- 213 (504)
T ss_pred HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEecceeccCCchhHHHHHHHHHHHH----
Confidence 9999998653 44 999999999999999999887665 455677652222211 1111111111111
Q ss_pred HHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCccee
Q psy11373 214 RIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLV 293 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~ 293 (539)
T Consensus 214 -------------------------------------------------------------------------------- 213 (504)
T PRK14716 214 -------------------------------------------------------------------------------- 213 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccchhhhhhhhhhcccchhHHHHHhhhccc-cccccchhhhchhhHhhh----cc--hHHHHHhhhHhHHHHH
Q psy11373 294 HQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQI-PCHTGMSTLTRKSIFDEL----GG--IKTFGCYLAEDLFFAR 366 (539)
Q Consensus 294 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~G~~~~~rr~~l~~~----gg--~~~~~~~~~ED~~l~~ 366 (539)
..|.+.....+.+|. .+..|+++++||++++++ || |+ .++++||++++.
T Consensus 214 ----------------------~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd--~~sLTED~dLgl 269 (504)
T PRK14716 214 ----------------------ESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFD--SDSLTEDYDIGL 269 (504)
T ss_pred ----------------------HHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCC--CCCcchHHHHHH
Confidence 112222222234444 345699999999999998 33 76 568999999999
Q ss_pred HHHHcCCceeeeccccc---------------ccCCCCCHHHHHHHHHHHHH
Q psy11373 367 ALSELGWKITISGQPAW---------------QNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 367 ~l~~~G~ri~~~~~~~~---------------~~~~~~s~~~~~~qr~RW~r 403 (539)
++.++|+|+.+.++++. .++.|.+++++++||.||.+
T Consensus 270 RL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~ 321 (504)
T PRK14716 270 RLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIY 321 (504)
T ss_pred HHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHh
Confidence 99999999999988743 25579999999999999996
No 14
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.98 E-value=4.4e-31 Score=260.02 Aligned_cols=221 Identities=19% Similarity=0.251 Sum_probs=167.6
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhH
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNM 147 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al 147 (539)
|.||||||+|||++.|.++|+|+.+|+||+ +|||+|||+|+|+|.++++++... ++.++.+.....+.| |+.++
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G---~~~a~ 76 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRT---KPKAC 76 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCc---hHHHH
Confidence 679999999999999999999999999984 899999999999999999887432 233343333334444 89999
Q ss_pred HHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh---CCCeeEEEeeceecC-CCChHHHHHHHHhcchhHHHHHhhhccc
Q psy11373 148 EPGYKAAKYELILISDSGIRMKEDTLLDMVNHL---KPGVGLVHQMPFTWD-RKGFAAALEKTYFGTAQARIYLAANFLQ 223 (539)
Q Consensus 148 ~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~---~~~vg~V~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (539)
|.|++.++||||+++|+|+.++|++++++++.+ +++++++++.....+ ..++..+.....+....
T Consensus 77 n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 145 (241)
T cd06427 77 NYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWF----------- 145 (241)
T ss_pred HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999999999998 367888877433322 23333322211111000
Q ss_pred cCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccc
Q psy11373 224 IPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRK 303 (539)
Q Consensus 224 ~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~ 303 (539)
T Consensus 146 -------------------------------------------------------------------------------- 145 (241)
T cd06427 146 -------------------------------------------------------------------------------- 145 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhcccchhHHHHHhhhcccc-ccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccc
Q psy11373 304 GFAAALEKTYFGTAQARIYLAANFLQIP-CHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPA 382 (539)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~ 382 (539)
..........+.. ...|+++++||++++++||++.. ..+||++++.|+.++|+++.+.+...
T Consensus 146 ---------------~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~--~~~eD~~l~~rl~~~G~r~~~~~~~~ 208 (241)
T cd06427 146 ---------------DYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDPF--NVTEDADLGLRLARAGYRTGVLNSTT 208 (241)
T ss_pred ---------------HHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCCCcc--cchhhHHHHHHHHHCCceEEEecccc
Confidence 0000000111222 24588999999999999999863 56899999999999999999998855
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q psy11373 383 WQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 383 ~~~~~~~s~~~~~~qr~RW~r 403 (539)
....+.+++.+.+||.||.+
T Consensus 209 -~~~~~~~~~~~~~q~~Rw~~ 228 (241)
T cd06427 209 -LEEANNALGNWIRQRSRWIK 228 (241)
T ss_pred -cccCcHhHHHHHHHHHHHhc
Confidence 46799999999999999988
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.97 E-value=6.2e-29 Score=274.53 Aligned_cols=239 Identities=18% Similarity=0.229 Sum_probs=176.5
Q ss_pred CCCCCcEEEEEecCCChh-----hHHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHH----HHHHHHhCC-CceEEEEec
Q psy11373 66 EMPYPGVTILKPLTGTDP-----NLYSNLETFFTMSYP-KYEICFCLEDDVDPAVPL----VEKLCKKYP-NVDTSVFIG 134 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~-----~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~i----l~~l~~~~p-~~~~~~~~~ 134 (539)
.+..|+|+|+||+|||+. .++++++|+.+|+|+ ++|++++||+++|++... +++++++++ +.++.+..+
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 455789999999999996 489999999999997 599999999999887543 445666664 234444455
Q ss_pred CcccCcchhhhhHHHHHHh--cCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcc
Q psy11373 135 GQVVGVNPKINNMEPGYKA--AKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGT 210 (539)
Q Consensus 135 ~~~~g~~~K~~al~~g~~~--a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~ 210 (539)
.+|.|. |++|++.+++. +++||++++|||+.+++|++.+++..| +|++|+|++.+...+.+++.+++++....
T Consensus 200 ~~n~~~--KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~slfaR~qqf~~~- 276 (691)
T PRK05454 200 RRNVGR--KAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADTLFARLQQFATR- 276 (691)
T ss_pred CcCCCc--cHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCCHHHHHHHHHHH-
Confidence 566654 99999999998 678999999999999999999999998 89999999988888889999998864221
Q ss_pred hhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCc
Q psy11373 211 AQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGV 290 (539)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~ 290 (539)
.|...-.. | .....+....+.|+|.++|+++|.+++|....+
T Consensus 277 ----~y~~~~~~------G----~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~------------------------ 318 (691)
T PRK05454 277 ----VYGPLFAA------G----LAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLP------------------------ 318 (691)
T ss_pred ----HHHHHHHh------h----hhhhccCccccccceEEEEHHHHHHhcCCcccc------------------------
Confidence 01100000 0 000011122344555555555555555532210
Q ss_pred ceecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHH
Q psy11373 291 GLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSE 370 (539)
Q Consensus 291 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~ 370 (539)
..|+|+ .+.++||++++.++++
T Consensus 319 --------------------------------------------------------g~~p~~--~~~LseD~~~a~~l~~ 340 (691)
T PRK05454 319 --------------------------------------------------------GRGPFG--GHILSHDFVEAALMRR 340 (691)
T ss_pred --------------------------------------------------------ccCCCC--CCcccHHHHHHHHHHH
Confidence 012222 4578999999999999
Q ss_pred cCCceeeecc-cccccCCCCCHHHHHHHHHHHHH
Q psy11373 371 LGWKITISGQ-PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 371 ~G~ri~~~~~-~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
+||++.+.|+ ...+++.|++++++++||.||++
T Consensus 341 ~GyrV~~~pd~~~~~ee~P~tl~~~~~qr~RW~~ 374 (691)
T PRK05454 341 AGWGVWLAPDLPGSYEELPPNLLDELKRDRRWCQ 374 (691)
T ss_pred CCCEEEEcCccccccccCCCCHHHHHHHHHHHHh
Confidence 9999999999 56788899999999999999998
No 16
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.97 E-value=5.2e-31 Score=260.73 Aligned_cols=225 Identities=17% Similarity=0.251 Sum_probs=173.2
Q ss_pred EEEEEecCCChhh-HHHHHHHHHc----CCC-CCeEEEEEeCCCCCCcHH----HHHHHHHhCCC-ceEEEEecCcccCc
Q psy11373 72 VTILKPLTGTDPN-LYSNLETFFT----MSY-PKYEICFCLEDDVDPAVP----LVEKLCKKYPN-VDTSVFIGGQVVGV 140 (539)
Q Consensus 72 VSIIIP~~ne~~~-l~~~L~Sl~~----q~y-p~~eIIvvdd~s~D~t~~----il~~l~~~~p~-~~~~~~~~~~~~g~ 140 (539)
|||+||+|||++. +.++|+++++ |+| |++||+++||++++.... .++++++++|+ .++++..+.++.|.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~ 80 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR 80 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCc
Confidence 6999999999988 8999998875 787 789998887776543321 23336666653 45555666677666
Q ss_pred chhhhhHHHHHHh--cCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHH
Q psy11373 141 NPKINNMEPGYKA--AKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIY 216 (539)
Q Consensus 141 ~~K~~al~~g~~~--a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (539)
|++|+|.++.. +++||++++|||..++|++|.+++++| +|++|+|++.+...+.+++++++++.+... +
T Consensus 81 --Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~-----~ 153 (254)
T cd04191 81 --KAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRL-----Y 153 (254)
T ss_pred --cHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHH-----H
Confidence 99999999987 789999999999999999999999999 899999999888888889988888654210 0
Q ss_pred HhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceeccc
Q psy11373 217 LAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQM 296 (539)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~ 296 (539)
..
T Consensus 154 ~~------------------------------------------------------------------------------ 155 (254)
T cd04191 154 GP------------------------------------------------------------------------------ 155 (254)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccccchhhhhhhhhhcccchhHHHHHhhh--ccccccccchhhhchhhHhhh------cchHHH-HHhhhHhHHHHHH
Q psy11373 297 PFTWDRKGFAAALEKTYFGTAQARIYLAANF--LQIPCHTGMSTLTRKSIFDEL------GGIKTF-GCYLAEDLFFARA 367 (539)
Q Consensus 297 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~G~~~~~rr~~l~~~------gg~~~~-~~~~~ED~~l~~~ 367 (539)
.+....+. .+..++.|+++++||++|+++ ||+..+ .+.++||++++.+
T Consensus 156 -----------------------~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~ 212 (254)
T cd04191 156 -----------------------VFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAAL 212 (254)
T ss_pred -----------------------HHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHH
Confidence 00000000 123445588888888888874 444444 4579999999999
Q ss_pred HHHcCCceeeeccccc-ccCCCCCHHHHHHHHHHHHHH
Q psy11373 368 LSELGWKITISGQPAW-QNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 368 l~~~G~ri~~~~~~~~-~~~~~~s~~~~~~qr~RW~r~ 404 (539)
++++||++.|.|+++. +.+.|.+++++++||.||++.
T Consensus 213 ~~~~G~ri~~~~~~~~~~~~~p~~~~~~~~qr~RW~~G 250 (254)
T cd04191 213 MRRAGWEVRLAPDLEGSYEECPPTLIDFLKRDRRWCQG 250 (254)
T ss_pred HHHcCCEEEEccCCcceEeECCCCHHHHHHHHHHHHhh
Confidence 9999999999999875 677899999999999999873
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.97 E-value=9.6e-31 Score=255.12 Aligned_cols=223 Identities=17% Similarity=0.250 Sum_probs=173.1
Q ss_pred CcEEEEEecCCCh-hhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhh
Q psy11373 70 PGVTILKPLTGTD-PNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146 (539)
Q Consensus 70 p~VSIIIP~~ne~-~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~a 146 (539)
|.||||||+|||+ +.+++||+|+++|+||+ +|||+|||+|+|+|.++++++..++ + ++++..+.+.|. |+++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~--~~~~~~~~~~~~--~~~~ 75 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-G--YRYLTRPDNRHA--KAGN 75 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-C--ceEEEeCCCCCC--cHHH
Confidence 5799999999987 56899999999999998 9999999999999999999987655 2 234444555553 8899
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-C-CCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhcccc
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-K-PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQI 224 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~-~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
+|.|++.+++||++++|+|+.++|++|+++++.+ + +++++|++.....+.+... .....+....
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~------------- 141 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFD-WLADGAPNEQ------------- 141 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcch-hHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999 4 8899998854443333210 0000000000
Q ss_pred CcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccch
Q psy11373 225 PCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKG 304 (539)
Q Consensus 225 ~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~ 304 (539)
T Consensus 142 -------------------------------------------------------------------------------- 141 (234)
T cd06421 142 -------------------------------------------------------------------------------- 141 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccc
Q psy11373 305 FAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQ 384 (539)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~ 384 (539)
..+ ........+..+..+..|+++++||++++++||++ ...++||++++.++.++|+++.+.+++...
T Consensus 142 ------~~~----~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ig~~~--~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~ 209 (234)
T cd06421 142 ------ELF----YGVIQPGRDRWGAAFCCGSGAVVRREALDEIGGFP--TDSVTEDLATSLRLHAKGWRSVYVPEPLAA 209 (234)
T ss_pred ------HHH----HHHHHHHHhhcCCceecCceeeEeHHHHHHhCCCC--ccceeccHHHHHHHHHcCceEEEecCcccc
Confidence 000 00000011122345567999999999999999998 346789999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy11373 385 NSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 385 ~~~~~s~~~~~~qr~RW~r 403 (539)
+..+.+++.+++|+.||.+
T Consensus 210 ~~~~~~~~~~~~q~~rw~~ 228 (234)
T cd06421 210 GLAPETLAAYIKQRLRWAR 228 (234)
T ss_pred ccCCccHHHHHHHHHHHhc
Confidence 9999999999999999976
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.97 E-value=4.6e-30 Score=251.34 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=168.0
Q ss_pred EEEEecCCCh-hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcH-HHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHH
Q psy11373 73 TILKPLTGTD-PNLYSNLETFFTMSYPKYEICFCLEDDVDPAV-PLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPG 150 (539)
Q Consensus 73 SIIIP~~ne~-~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~-~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g 150 (539)
|||||+|||+ +.+++||+|+.+|+||++||+||||+|+|+|. +.++++.++++. +++++...++.|. |++++|.|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~-~i~~i~~~~~~G~--~~~a~n~g 77 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGE-RFRFFHVEPLPGA--KAGALNYA 77 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCC-cEEEEEcCCCCCC--chHHHHHH
Confidence 7999999998 68999999999999999999999999999985 777777666543 3445555555665 78899999
Q ss_pred HHhcC--CcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCC-CChHHHHHHHHhcchhHHHHHhhhccccCc
Q psy11373 151 YKAAK--YELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDR-KGFAAALEKTYFGTAQARIYLAANFLQIPC 226 (539)
Q Consensus 151 ~~~a~--~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (539)
++.++ +||++++|+|+.++|++|+++++.+ ++++++|++.....+. .+.........+. .+...
T Consensus 78 ~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------- 145 (236)
T cd06435 78 LERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYK-----GFFDI------- 145 (236)
T ss_pred HHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHH-----HHHHH-------
Confidence 99975 7999999999999999999999999 7889999874323222 2222111100000 00000
Q ss_pred CCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhh
Q psy11373 227 HTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFA 306 (539)
Q Consensus 227 ~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~ 306 (539)
+
T Consensus 146 ---------------------------------~---------------------------------------------- 146 (236)
T cd06435 146 ---------------------------------G---------------------------------------------- 146 (236)
T ss_pred ---------------------------------H----------------------------------------------
Confidence 0
Q ss_pred hhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccccC
Q psy11373 307 AALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNS 386 (539)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~~~ 386 (539)
....+..+..+..|+++++||++++++|||+. ...+||++++.++.++||++.+.|++..++.
T Consensus 147 ---------------~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~--~~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~ 209 (236)
T cd06435 147 ---------------MVSRNERNAIIQHGTMCLIRRSALDDVGGWDE--WCITEDSELGLRMHEAGYIGVYVAQSYGHGL 209 (236)
T ss_pred ---------------hccccccCceEEecceEEEEHHHHHHhCCCCC--ccccchHHHHHHHHHCCcEEEEcchhhccCc
Confidence 00000111233458889999999999999985 3578999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy11373 387 GYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 387 ~~~s~~~~~~qr~RW~r~ 404 (539)
.+.+++++.+||.||...
T Consensus 210 ~~~~~~~~~~q~~rw~~g 227 (236)
T cd06435 210 IPDTFEAFKKQRFRWAYG 227 (236)
T ss_pred CcccHHHHHHHHHHHhcc
Confidence 999999999999999873
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=4.3e-29 Score=242.25 Aligned_cols=221 Identities=20% Similarity=0.257 Sum_probs=168.7
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
||||+|||++.|++||+|+++|+||+ +|||+|||+|+|+|.++++ +....+..+++++.... .+..+|+.++|.|+
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~-~~~~g~~~a~n~g~ 78 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSR-VSISGKKNALTTAI 78 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccC-cccchhHHHHHHHH
Confidence 69999999999999999999999997 9999999999999999988 44445444555444432 33445899999999
Q ss_pred HhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcCCCC
Q psy11373 152 KAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGC 230 (539)
Q Consensus 152 ~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (539)
+++++||++++|+|+.++|++|+++++.+ +++.+++++.......+++..............
T Consensus 79 ~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 141 (229)
T cd04192 79 KAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLG----------------- 141 (229)
T ss_pred HHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHH-----------------
Confidence 99999999999999999999999999988 666777777444434444444433222110000
Q ss_pred ccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhhhhh
Q psy11373 231 TLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAALE 310 (539)
Q Consensus 231 ~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~~~~ 310 (539)
T Consensus 142 -------------------------------------------------------------------------------- 141 (229)
T cd04192 142 -------------------------------------------------------------------------------- 141 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccchhHHHHHhhhccc-cccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCC-ceeee--cccccccC
Q psy11373 311 KTYFGTAQARIYLAANFLQI-PCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGW-KITIS--GQPAWQNS 386 (539)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~-~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~-ri~~~--~~~~~~~~ 386 (539)
. .......+. .+..|+++++||++++++|||+......+||.+++.++.++|+ ++.+. +...+++.
T Consensus 142 ---------~-~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 211 (229)
T cd04192 142 ---------L-IAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQ 211 (229)
T ss_pred ---------H-HhhHHHhcCccccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecC
Confidence 0 000000111 2345888999999999999998666677899999999999999 88876 56777888
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy11373 387 GYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 387 ~~~s~~~~~~qr~RW~r 403 (539)
.+.+++++++||.||++
T Consensus 212 ~~~~~~~~~~q~~Rw~~ 228 (229)
T cd04192 212 PVTSWKELLNQRKRWAS 228 (229)
T ss_pred CchhHHHHHHHHHHhhc
Confidence 99999999999999975
No 20
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.96 E-value=1.8e-27 Score=264.24 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=171.3
Q ss_pred CCCCCCcEEEEEecCCChhhHHHHHHHHH-cCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchh
Q psy11373 65 QEMPYPGVTILKPLTGTDPNLYSNLETFF-TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPK 143 (539)
Q Consensus 65 ~~~~~p~VSIIIP~~ne~~~l~~~L~Sl~-~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K 143 (539)
+..+.|+|||+||+|||+..+.+++++++ +|+||++||++++|.+||.|.++++++++++|++++ ++..+ .|.++|
T Consensus 58 ~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~--v~~~~-~g~~gK 134 (727)
T PRK11234 58 YKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHK--VVCAR-PGPTSK 134 (727)
T ss_pred ccCCCCCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEE--EEeCC-CCCCCH
Confidence 34567899999999999999999999987 799999999999999999999999999999998743 33333 455679
Q ss_pred hhhHHHHHHhc---------CCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecC--CCChHHHHHHHHhcch
Q psy11373 144 INNMEPGYKAA---------KYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWD--RKGFAAALEKTYFGTA 211 (539)
Q Consensus 144 ~~al~~g~~~a---------~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~--~~~~~~~~~~~~~~~~ 211 (539)
++|||.++..+ +++.+++.|||+.++|++|+ +++++ ++. ++|++.....+ .+++.+..+..+|...
T Consensus 135 a~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~ 212 (727)
T PRK11234 135 ADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK-DLIQIPVYPFEREWTHFTSGTYIDEFAEL 212 (727)
T ss_pred HHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-CeEeecccCCCccHHHHHHHHHHHHHHHH
Confidence 99999999986 45778889999999999998 56777 544 88888433211 1122233333333211
Q ss_pred hHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcc
Q psy11373 212 QARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVG 291 (539)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~ 291 (539)
T Consensus 213 -------------------------------------------------------------------------------- 212 (727)
T PRK11234 213 -------------------------------------------------------------------------------- 212 (727)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccccccccchhhhhhhhhhcccchhHHHHHhhhc-cccccccchhhh-ch--hhHhhhc-chHHHHHhhhHhHHHHH
Q psy11373 292 LVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFL-QIPCHTGMSTLT-RK--SIFDELG-GIKTFGCYLAEDLFFAR 366 (539)
Q Consensus 292 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~G~~~~~-rr--~~l~~~g-g~~~~~~~~~ED~~l~~ 366 (539)
|.+...+...+ |.....|.+++| || +++.+.| |+....++++||+++|.
T Consensus 213 --------------------------~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~ 266 (727)
T PRK11234 213 --------------------------HGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGF 266 (727)
T ss_pred --------------------------hhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHH
Confidence 11111222233 333456889999 77 4677876 54444789999999999
Q ss_pred HHHHcCCceeeecccc-----------------------cccCCCCCHHHHHHHHHHHHHH
Q psy11373 367 ALSELGWKITISGQPA-----------------------WQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 367 ~l~~~G~ri~~~~~~~-----------------------~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
++.++||++.+.+.++ +..+.|.|+++.++||.||.+.
T Consensus 267 rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G 327 (727)
T PRK11234 267 RLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIG 327 (727)
T ss_pred HHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHcc
Confidence 9999999999998433 3445699999999999999983
No 21
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.96 E-value=1.9e-28 Score=239.47 Aligned_cols=219 Identities=19% Similarity=0.294 Sum_probs=170.4
Q ss_pred cEEEEEecCCCh-hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 71 GVTILKPLTGTD-PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 71 ~VSIIIP~~ne~-~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
.||||||+|||+ +.+.+||+|+.+|+ ++|||||||+|+|++.+.+++. .+++.+ .+ ...++.| |.+++|.
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~~eiivvdd~s~d~~~~~l~~~-~~~~~~--~v-~~~~~~g---~~~a~n~ 71 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK--PLEIIVVTDGDDEPYLSILSQT-VKYGGI--FV-ITVPHPG---KRRALAE 71 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC--CCEEEEEeCCCChHHHHHHHhh-ccCCcE--EE-EecCCCC---hHHHHHH
Confidence 389999999999 99999999999998 6899999999999999887543 234443 32 3345555 9999999
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCC-CChHHHHHHHHhcchhHHHHHhhhccccCcC
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDR-KGFAAALEKTYFGTAQARIYLAANFLQIPCH 227 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (539)
|++.+++|+++++|+|+.++|++|+++++.+ ++++++|++.....+. .+........++....
T Consensus 72 g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 136 (235)
T cd06434 72 GIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRN--------------- 136 (235)
T ss_pred HHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHH---------------
Confidence 9999999999999999999999999999999 8999999985444433 2333333222211000
Q ss_pred CCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhh
Q psy11373 228 TGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAA 307 (539)
Q Consensus 228 ~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~ 307 (539)
T Consensus 137 -------------------------------------------------------------------------------- 136 (235)
T cd06434 137 -------------------------------------------------------------------------------- 136 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccchhHHHHHhhhc-cccccccchhhhchhhHhhhcchHHH--------HHhhhHhHHHHHHHHHcCCceeee
Q psy11373 308 ALEKTYFGTAQARIYLAANFL-QIPCHTGMSTLTRKSIFDELGGIKTF--------GCYLAEDLFFARALSELGWKITIS 378 (539)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~G~~~~~rr~~l~~~gg~~~~--------~~~~~ED~~l~~~l~~~G~ri~~~ 378 (539)
...+...+.. +..+..|.++++||+++++.++.+.+ ....+||.+++.++.++||++.+.
T Consensus 137 -----------~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~ 205 (235)
T cd06434 137 -----------EEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQ 205 (235)
T ss_pred -----------HHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEe
Confidence 0000011111 23567899999999999998776654 235789999999999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHH
Q psy11373 379 GQPAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 379 ~~~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
+.+.+.+..+.+++++++||.||.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~q~~Rw~~~ 231 (235)
T cd06434 206 YTSEAYTETPENYKKFLKQQLRWSRS 231 (235)
T ss_pred cCCeEEEEcchhHHHHHHHhhhhhhc
Confidence 99999889999999999999999874
No 22
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.96 E-value=6.5e-29 Score=245.28 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=154.9
Q ss_pred EEEecCCCh-hhHHHHHHHHHcCCCC----------CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcch
Q psy11373 74 ILKPLTGTD-PNLYSNLETFFTMSYP----------KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNP 142 (539)
Q Consensus 74 IIIP~~ne~-~~l~~~L~Sl~~q~yp----------~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~ 142 (539)
||||+|||+ ..|+++|+|+++|+|| ++||+|++|+|+| .+.|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~g--- 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRG--- 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCc---
Confidence 799999997 7899999999999999 7999999999999 1122
Q ss_pred hh-------hhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCC-CChHHHHHHHHhcchh
Q psy11373 143 KI-------NNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDR-KGFAAALEKTYFGTAQ 212 (539)
Q Consensus 143 K~-------~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~-~~~~~~~~~~~~~~~~ 212 (539)
|. +.+|.++..+++||++++|+|+.++|++|++++++| +|++|+|+|.....+. .++....+..++...+
T Consensus 54 k~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~ 133 (244)
T cd04190 54 KRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISH 133 (244)
T ss_pred chHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhh
Confidence 22 356788888999999999999999999999999999 7899999996555444 4666766665543111
Q ss_pred HHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcce
Q psy11373 213 ARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGL 292 (539)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~ 292 (539)
..... .....+....++|++.+||+++++++||+..
T Consensus 134 ~~~~~----------------~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~---------------------------- 169 (244)
T cd04190 134 WLDKA----------------FESVFGFVTCLPGCFSMYRIEALKGDNGGKG---------------------------- 169 (244)
T ss_pred hhccc----------------HHHcCCceEECCCceEEEEehhhcCCccccc----------------------------
Confidence 00000 0001111223445555555555555544211
Q ss_pred ecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcC
Q psy11373 293 VHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELG 372 (539)
Q Consensus 293 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G 372 (539)
. .....++|+.+++ |+......++||.+++.++.++|
T Consensus 170 ----------------------------------------~-~~~~~~~~~~~~~--~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 170 ----------------------------------------P-LLDYAYLTNTVDS--LHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ----------------------------------------c-chhhccccCcccc--hHHHHHHhHhcccceeHHHhccC
Confidence 0 1111233333333 22223456899999999999999
Q ss_pred Cceee--ecccccccCCCCCHHHHHHHHHHHHHH
Q psy11373 373 WKITI--SGQPAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 373 ~ri~~--~~~~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
|++.+ .|+++++++.|.+++++++||.||.+.
T Consensus 207 ~~~~~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g 240 (244)
T cd04190 207 PKRKYLYVPGAVAETDVPETFVELLSQRRRWINS 240 (244)
T ss_pred CccEEEEecccEEEEECCCCHHHHHHHhHhhhcc
Confidence 99999 999999999999999999999999873
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.96 E-value=2e-27 Score=234.89 Aligned_cols=222 Identities=19% Similarity=0.281 Sum_probs=173.7
Q ss_pred CCCCCCCCcEEEEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCc
Q psy11373 63 LPQEMPYPGVTILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGV 140 (539)
Q Consensus 63 ~~~~~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~ 140 (539)
.++....|++|||||+|||++.+.+||+|+.+|+||+ +|||++||+|+|+|.++++++.++ +++++..+++.|
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~~g- 96 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPERRG- 96 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCCCC-
Confidence 4455678899999999999999999999999999986 899999999999999999988654 345556666767
Q ss_pred chhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhh
Q psy11373 141 NPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAA 219 (539)
Q Consensus 141 ~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (539)
|..++|.|++.+++||++++|+|+.++|++++++++.+ +++++++++.....+.++ .......+.. ..
T Consensus 97 --~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--------~~ 165 (251)
T cd06439 97 --KAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGG-SGSGEGLYWK--------YE 165 (251)
T ss_pred --hHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcc-cchhHHHHHH--------HH
Confidence 89999999999999999999999999999999999999 788999998555544332 1111110000 00
Q ss_pred hccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccc
Q psy11373 220 NFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFT 299 (539)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~ 299 (539)
+.
T Consensus 166 ~~------------------------------------------------------------------------------ 167 (251)
T cd06439 166 NW------------------------------------------------------------------------------ 167 (251)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccchhhhhhhhhhcccchhHHHHHhhhc-cccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeee
Q psy11373 300 WDRKGFAAALEKTYFGTAQARIYLAANFL-QIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITIS 378 (539)
Q Consensus 300 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~ 378 (539)
........ ......|+++++||++++ +++ .....||.+++.++.++|+++.+.
T Consensus 168 ---------------------~~~~~~~~~~~~~~~g~~~~~rr~~~~---~~~--~~~~~eD~~l~~~~~~~G~~~~~~ 221 (251)
T cd06439 168 ---------------------LKRAESRLGSTVGANGAIYAIRRELFR---PLP--ADTINDDFVLPLRIARQGYRVVYE 221 (251)
T ss_pred ---------------------HHHHHHhcCCeeeecchHHHhHHHHhc---CCC--cccchhHHHHHHHHHHcCCeEEec
Confidence 00000001 123355888999999998 444 235679999999999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHH
Q psy11373 379 GQPAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 379 ~~~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
|.+..++..+.+.+++++|+.||.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~r~~~g 247 (251)
T cd06439 222 PDAVAYEEVAEDGSEEFRRRVRIAAG 247 (251)
T ss_pred cccEEEEeCcccHHHHHHHHHHHHhc
Confidence 99999999999999999999999873
No 24
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=2.1e-25 Score=244.72 Aligned_cols=228 Identities=18% Similarity=0.157 Sum_probs=171.9
Q ss_pred CCCCCcEEEEEecCCChhhHHHHHHHHH-cCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhh
Q psy11373 66 EMPYPGVTILKPLTGTDPNLYSNLETFF-TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKI 144 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~~l~~~L~Sl~-~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~ 144 (539)
..+.|++||+||+|||++.|.+++++++ +++||++||+++.+.+|++|.+.++++.+++|++++ ++. ++.|..+|+
T Consensus 67 ~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~--v~~-~~~gp~gKa 143 (703)
T PRK15489 67 ERDEQPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVR--VEV-PHDGPTCKA 143 (703)
T ss_pred ccCCCceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEE--EEc-CCCCCCCHH
Confidence 3456899999999999999999999975 789999999998777777999999999888997643 332 334556699
Q ss_pred hhHHHHHHhc-------CCc--EEEEEcCCCCCChHHHHHHHHhhCCCeeEEEe--eceecCCCChHHHHHHHHhcchhH
Q psy11373 145 NNMEPGYKAA-------KYE--LILISDSGIRMKEDTLLDMVNHLKPGVGLVHQ--MPFTWDRKGFAAALEKTYFGTAQA 213 (539)
Q Consensus 145 ~al~~g~~~a-------~~d--~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g--~~~~~~~~~~~~~~~~~~~~~~~~ 213 (539)
.|||.++..+ +++ .+++.|||+.++|+.|..+ +++.++..++++ .+..++.+++.++....+|.+.+.
T Consensus 144 ~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~ 222 (703)
T PRK15489 144 DCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLSLERKWYEWVAGTYMDEFAEWHQ 222 (703)
T ss_pred HHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeeccCCCccccHHHHHHHHHHHHHhh
Confidence 9999999875 333 4899999999999999887 454222245665 233455678888888888874443
Q ss_pred HHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCccee
Q psy11373 214 RIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLV 293 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~ 293 (539)
++-..
T Consensus 223 ~~l~~--------------------------------------------------------------------------- 227 (703)
T PRK15489 223 KDLVV--------------------------------------------------------------------------- 227 (703)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 22111
Q ss_pred cccccccccchhhhhhhhhhcccchhHHHHHhhhcccc-ccccchhhhchhhHhhh---cchHHH-HHhhhHhHHHHHHH
Q psy11373 294 HQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIP-CHTGMSTLTRKSIFDEL---GGIKTF-GCYLAEDLFFARAL 368 (539)
Q Consensus 294 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~G~~~~~rr~~l~~~---gg~~~~-~~~~~ED~~l~~~l 368 (539)
...++.+ ...|.++.|||++++++ ||++.| .++++||++++.|+
T Consensus 228 -------------------------------r~~l~~~ipl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL 276 (703)
T PRK15489 228 -------------------------------RESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRL 276 (703)
T ss_pred -------------------------------HHHcCCceeccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHH
Confidence 0112222 24588999999999877 766555 46889999999999
Q ss_pred HHcCCceeeecc-----------------------cccccCCCCCHHHHHHHHHHHHH
Q psy11373 369 SELGWKITISGQ-----------------------PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 369 ~~~G~ri~~~~~-----------------------~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
.++|+|+.+.-. ..+.++.|.++++.++||.||..
T Consensus 277 ~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~ 334 (703)
T PRK15489 277 AELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVL 334 (703)
T ss_pred HHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHh
Confidence 999999888321 33345579999999999999987
No 25
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.95 E-value=2.8e-27 Score=221.18 Aligned_cols=169 Identities=36% Similarity=0.607 Sum_probs=148.6
Q ss_pred CCceEEEEecCcccCcchhhhhHHHHHHh-cCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHH
Q psy11373 125 PNVDTSVFIGGQVVGVNPKINNMEPGYKA-AKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAA 202 (539)
Q Consensus 125 p~~~~~~~~~~~~~g~~~K~~al~~g~~~-a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~ 202 (539)
|+++ ++++.+.+.|.|+|++||..++++ +++|+++++|+|+.++|++|+++++++ +|++|+|++.++..+.+++.+.
T Consensus 1 P~v~-~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~ 79 (175)
T PF13506_consen 1 PHVD-RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSR 79 (175)
T ss_pred CCCC-EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHH
Confidence 6677 688999999999999999999998 999999999999999999999999999 8899999999998888899888
Q ss_pred HHHHHhcchhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhh
Q psy11373 203 LEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDM 282 (539)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~ 282 (539)
++..+.+ .
T Consensus 80 l~~~~~~-~----------------------------------------------------------------------- 87 (175)
T PF13506_consen 80 LEAAFFN-F----------------------------------------------------------------------- 87 (175)
T ss_pred HHHHHHh-H-----------------------------------------------------------------------
Confidence 8766542 0
Q ss_pred hhcccCCcceecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhH
Q psy11373 283 VNHLKPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDL 362 (539)
Q Consensus 283 ~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~ 362 (539)
+...+.+ ..+.+|.+|++|++||++|+++||++++.++++||+
T Consensus 88 -----------------------------------~~~~~~a--~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~ 130 (175)
T PF13506_consen 88 -----------------------------------LPGVLQA--LGGAPFAWGGSMAFRREALEEIGGFEALADYLADDY 130 (175)
T ss_pred -----------------------------------HHHHHHH--hcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHH
Confidence 1111111 335688999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeecccccccCCC----CCHHHHHHHHHHHHH
Q psy11373 363 FFARALSELGWKITISGQPAWQNSGY----CDVTSFRNRLSRWVK 403 (539)
Q Consensus 363 ~l~~~l~~~G~ri~~~~~~~~~~~~~----~s~~~~~~qr~RW~r 403 (539)
.++.+++++|+++.+++.++.++..+ .+++++++|+.||+|
T Consensus 131 ~l~~~~~~~G~~v~~~~~~v~~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 131 ALGRRLRARGYRVVLSPYPVVQTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred HHHHHHHHCCCeEEEcchheeecccCccccccHHHHHHHHHhhcC
Confidence 99999999999999999988877666 489999999999975
No 26
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.94 E-value=6.3e-25 Score=215.73 Aligned_cols=225 Identities=20% Similarity=0.229 Sum_probs=168.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCC--CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHH
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYP--KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNME 148 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp--~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~ 148 (539)
++|||||+||+++.+.++|+|+.+|+|| ++|||++||+|+|++.++++++.++++.+ +++. .++.| ++.++|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v--~~i~-~~~~~---~~~a~N 74 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRI--RLID-NPKRI---QSAGLN 74 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeE--EEEe-CCCCC---chHHHH
Confidence 3899999999999999999999999996 69999999999999999999998877755 3333 33334 678899
Q ss_pred HHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcC
Q psy11373 149 PGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCH 227 (539)
Q Consensus 149 ~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (539)
.|++.+++||++++|+|+.++|++|+++++.+ +++..++.+.......+............ ...
T Consensus 75 ~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~--------- 139 (249)
T cd02525 75 IGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSS------PLG--------- 139 (249)
T ss_pred HHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhc------hhc---------
Confidence 99999999999999999999999999999888 77777777743333222221111111100 000
Q ss_pred CCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhh
Q psy11373 228 TGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAA 307 (539)
Q Consensus 228 ~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~ 307 (539)
.+ .. ++.
T Consensus 140 ~~--------~~---------------------~~~-------------------------------------------- 146 (249)
T cd02525 140 SG--------GS---------------------AYR-------------------------------------------- 146 (249)
T ss_pred cC--------Cc---------------------ccc--------------------------------------------
Confidence 00 00 000
Q ss_pred hhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccccCC
Q psy11373 308 ALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSG 387 (539)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~~~~ 387 (539)
. .......+..|.++++||++++++||++.. ...+||.+++.++.++|+++.+.|++...+..
T Consensus 147 --------~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 147 --------G--------GAVKIGYVDTVHHGAYRREVFEKVGGFDES-LVRNEDAELNYRLRKAGYKIWLSPDIRVYYYP 209 (249)
T ss_pred --------c--------cccccccccccccceEEHHHHHHhCCCCcc-cCccchhHHHHHHHHcCcEEEEcCCeEEEEcC
Confidence 0 000001133477788999999999988753 23579999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy11373 388 YCDVTSFRNRLSRWVKLRI 406 (539)
Q Consensus 388 ~~s~~~~~~qr~RW~r~~~ 406 (539)
+.+++.+++|+.||.+...
T Consensus 210 ~~s~~~~~~~~~r~~~~~~ 228 (249)
T cd02525 210 RSTLKKLARQYFRYGKWRA 228 (249)
T ss_pred CCCHHHHHHHHHHHhhhhH
Confidence 9999999999999998544
No 27
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.92 E-value=3.8e-25 Score=224.94 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=95.4
Q ss_pred EEEEecCCCh-hhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHH--HHhCCCceEEEEecCcccCcchhhhhH
Q psy11373 73 TILKPLTGTD-PNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKL--CKKYPNVDTSVFIGGQVVGVNPKINNM 147 (539)
Q Consensus 73 SIIIP~~ne~-~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l--~~~~p~~~~~~~~~~~~~g~~~K~~al 147 (539)
|||||+|||+ +.|.+||+|+.+|+++. +|||||||+|+|+|.+++++. .+..++ ++++..+++.| ++.+.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~--v~vi~~~~n~G---~~~a~ 75 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPK--VKVLRLKKREG---LIRAR 75 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCc--EEEEEcCCCCC---HHHHH
Confidence 7999999999 99999999999999874 699999999999999988762 233454 45567777778 78889
Q ss_pred HHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 148 EPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 148 ~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
|.|+++|+||||+++|+|+.++|+||+++++.+ ++..+++++
T Consensus 76 N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p 118 (299)
T cd02510 76 IAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCP 118 (299)
T ss_pred HHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEe
Confidence 999999999999999999999999999999999 444455554
No 28
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.5e-23 Score=199.84 Aligned_cols=115 Identities=22% Similarity=0.411 Sum_probs=100.1
Q ss_pred CcEEEEEecCCCh-hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcH-HHHHHHHHhCCCceEEEEecCcccCcchhhhhH
Q psy11373 70 PGVTILKPLTGTD-PNLYSNLETFFTMSYPKYEICFCLEDDVDPAV-PLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNM 147 (539)
Q Consensus 70 p~VSIIIP~~ne~-~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~-~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al 147 (539)
|.+|||||+||++ +.+++||+|+.+|+++++|||+|||+|+|++. ++++++..+++++ +++..+++.| ++.++
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~--~~~~~~~~~g---~~~a~ 75 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRI--KVVFREENGG---ISAAT 75 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCE--EEEEcccCCC---HHHHH
Confidence 5799999999999 99999999999999999999999999999765 5666666666654 4445566666 78899
Q ss_pred HHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEe
Q psy11373 148 EPGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQ 189 (539)
Q Consensus 148 ~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g 189 (539)
|.|++.+++||++++|+|+.++|++++++++.+ ++++++|.+
T Consensus 76 n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 76 NSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred HHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 999999999999999999999999999999988 678888876
No 29
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.7e-23 Score=199.39 Aligned_cols=115 Identities=16% Similarity=0.239 Sum_probs=100.8
Q ss_pred EEEEecCCCh--hhHHHHHHHHHcCCCCCeEEEEEeCCC-CCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 73 TILKPLTGTD--PNLYSNLETFFTMSYPKYEICFCLEDD-VDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 73 SIIIP~~ne~--~~l~~~L~Sl~~q~yp~~eIIvvdd~s-~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
||+||+||++ +.|++||+|+.+|+|++.|||||||+| +|.|.++++++.++++ + +++..+++.| +..++|.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~-i--~~i~~~~n~G---~~~a~N~ 74 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP-L--KVVPLEKNRG---LGKALNE 74 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC-e--EEEEcCcccc---HHHHHHH
Confidence 6999999998 489999999999999999999999998 7889999999887776 3 4556666777 7889999
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeecee
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFT 193 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~ 193 (539)
|++.++|||++++|+|+.++|++++++++.+ +++++++.+....
T Consensus 75 g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (201)
T cd04195 75 GLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLE 120 (201)
T ss_pred HHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEE
Confidence 9999999999999999999999999999998 6788888874433
No 30
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.91 E-value=1.8e-22 Score=199.16 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHc--CCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhh
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFT--MSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKI 144 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~--q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~ 144 (539)
...|.||||||+|||++.|.++++++.+ +.++++|||+|||+|+|+|.++++++.++++..++.++...++.| |.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G---~~ 82 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLG---LG 82 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCC---HH
Confidence 3457899999999999999999998865 345579999999999999999999998887765566556667777 88
Q ss_pred hhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEee
Q psy11373 145 NNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQM 190 (539)
Q Consensus 145 ~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~ 190 (539)
.++|.|++.+++||++++|+|+.++|++|+++++.+ +++.++|.|.
T Consensus 83 ~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 83 TAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 899999999999999999999999999999999998 6678888884
No 31
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.90 E-value=2.5e-22 Score=194.59 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=95.0
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc-ccCcchhhhhHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ-VVGVNPKINNMEPGY 151 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~-~~g~~~K~~al~~g~ 151 (539)
||||+||+++.|++||+|+.+|+|+ ++|||||||+|+|+|.++++++.++++..+++++.... .....+.+.+.|.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~ 80 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAI 80 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHH
Confidence 6999999999999999999999998 59999999999999999999988877654555443222 111123678889999
Q ss_pred HhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 152 KAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 152 ~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
+.++|||++++|+|+.++|+++++++..+ +....++.+
T Consensus 81 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 81 AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999998887 333345544
No 32
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.89 E-value=1.5e-22 Score=192.29 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=104.6
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC---cccCcchhhhhHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG---QVVGVNPKINNMEPG 150 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~---~~~g~~~K~~al~~g 150 (539)
||||+|||++.|.+||+|+.+|+ +++|||+|||+|+|.|.++++ +...++++ +++... .+.| |+.++|.|
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~~v--~~i~~~~~~~~~G---k~~aln~g 73 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK-PNFLVLVIDDASDDDTAGIVR-LAITDSRV--HLLRRHLPNARTG---KGDALNAA 73 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC-CCeEEEEEECCCCcCHHHHHh-heecCCcE--EEEeccCCcCCCC---HHHHHHHH
Confidence 69999999999999999999998 889999999999999999997 43344554 434332 3344 99999999
Q ss_pred HHhcC-----------CcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecC-CCChHHHHHHHHhc
Q psy11373 151 YKAAK-----------YELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWD-RKGFAAALEKTYFG 209 (539)
Q Consensus 151 ~~~a~-----------~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~-~~~~~~~~~~~~~~ 209 (539)
++.++ +|+++++|+|+.++|++|+++...+ +++++++++.....+ ..++..+++..++.
T Consensus 74 ~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~ 145 (191)
T cd06436 74 YDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFF 145 (191)
T ss_pred HHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHH
Confidence 99874 4799999999999999999988888 789999988555544 35677777766554
No 33
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=2.4e-22 Score=192.79 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=103.3
Q ss_pred EEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 73 TILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 73 SIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
||+||+||+++.|++||+|+++|+|+++|||||||+|+|+|.++++++.+++|. .+.++..+++.| +..|+|.|+.
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~-~~~~~~~~~~~G---~~~~~n~g~~ 76 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPF-IIILIRNGKNLG---VARNFESLLQ 76 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCc-eEEEEeCCCCcc---HHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999888873 344556667777 8999999999
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeece
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPF 192 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~ 192 (539)
.+++||++++|+|+.++|++|+++++.+ ++..+++++...
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 118 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLE 118 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcE
Confidence 9999999999999999999999999985 677777777433
No 34
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.88 E-value=1.7e-22 Score=190.30 Aligned_cols=125 Identities=13% Similarity=0.193 Sum_probs=98.0
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCC--CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYP--KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp--~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
||||+|||++.|.+||+|+.+|+|| ++||+||||+|+|+|.++++++.. .+......++.| |..++|.|+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~g---k~~aln~g~ 72 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRG---KGYALDFGF 72 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCC---HHHHHHHHH
Confidence 6999999999999999999999996 599999999999999998876422 222222334445 999999999
Q ss_pred Hhc-----CCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEeeceecCC-CChHHHHHHH
Q psy11373 152 KAA-----KYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMPFTWDR-KGFAAALEKT 206 (539)
Q Consensus 152 ~~a-----~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g~~~~~~~-~~~~~~~~~~ 206 (539)
+.+ ++|+++++|+|+.++|++++++++.+.++.++|++.....+. .++..+....
T Consensus 73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~ 133 (183)
T cd06438 73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKNPDDSWITRLYAF 133 (183)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeCCccCHHHHHHHH
Confidence 876 499999999999999999999999995556778774444332 3555555443
No 35
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=4.2e-22 Score=190.21 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
||||+||+++.|++||+|+.+|++|+.|||++||+|+|+|.++++++..+++ ++++..+++.| ++.++|.|++.
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g---~~~~~n~~~~~ 74 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLG---GAGGFYEGVRR 74 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccc---hhhHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998876554 45556677777 55666666665
Q ss_pred ---cCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 154 ---AKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 154 ---a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
+++|+++++|+|+.++|++++++++.+ +++++++.+
T Consensus 75 a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 114 (202)
T cd04185 75 AYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAP 114 (202)
T ss_pred HhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecc
Confidence 479999999999999999999999999 677887765
No 36
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.88 E-value=1.1e-21 Score=189.89 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=101.5
Q ss_pred EEEecCCChhhHHHHHHHHHcCCC-CCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSY-PKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~y-p~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
||||+|||++.|.++|+|+.+|.+ ++.|||+|||+|+|+|.++++++.++++++ +++...++.| ++.++|.|++
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i--~~~~~~~n~G---~~~a~n~g~~ 75 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRV--RLIVRPGKRG---LGSAYIEGFK 75 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCce--EEEecCCCCC---hHHHHHHHHH
Confidence 699999999999999999999998 679999999999999999999998888865 4556677777 8999999999
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeec
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMP 191 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~ 191 (539)
.|++|+++++|+|+.++|++++.+++.+ +++.++|.|..
T Consensus 76 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 76 AARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 9999999999999999999999999996 66777777743
No 37
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=5e-22 Score=188.03 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=98.2
Q ss_pred EEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 73 TILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 73 SIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
|||||+||+++.+++||+|+.+|+++++|||+|||+|+|++.++++++..+ . ..+...++.| ++.++|.|++
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~-~~~~~~~~~g---~~~a~n~~~~ 72 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----I-TYWISEPDKG---IYDAMNKGIA 72 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----c-EEEEecCCcC---HHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999887654 1 2334556666 8899999999
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeecee
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFT 193 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~ 193 (539)
.+++||++++|+|+.+.++++.+++..+ +++.+++.|....
T Consensus 73 ~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~ 115 (202)
T cd06433 73 LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLL 115 (202)
T ss_pred HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEE
Confidence 9999999999999999999999999555 7788888885444
No 38
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=1.7e-21 Score=188.33 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=87.8
Q ss_pred EEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 72 VTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 72 VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
||||||+||+++.+.+||+|+.+|+|+++||++|||+|+|++.+++++ +++ .++. .+.| ++.++|.|+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-----~~~--~~~~--~~~g---~~~a~n~g~ 68 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-----AGV--VVIS--SPKG---RARQMNAGA 68 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-----CCe--EEEe--CCcC---HHHHHHHHH
Confidence 699999999999999999999999998899999999999999988765 222 2222 3344 778899999
Q ss_pred HhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEE
Q psy11373 152 KAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLV 187 (539)
Q Consensus 152 ~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V 187 (539)
+.+++|+++++|+|+.++|+++++++..+ +++..++
T Consensus 69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~ 105 (221)
T cd02522 69 AAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAG 105 (221)
T ss_pred HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEE
Confidence 99999999999999999999999998777 4444333
No 39
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.86 E-value=8.3e-21 Score=177.77 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=93.6
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
||||+||+++.+++||+|+.+|+++++||+++||+|+|.|.++++++.+..+.....+...+.+. +++.++|.|++.
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~n~g~~~ 77 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGF---RKAKIRNKAIAA 77 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcch---hHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999988765443222222222223 378899999999
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEe
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQ 189 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g 189 (539)
+++||++++|+|+.++|++|+++++.+++++.++++
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~~~v~g~ 113 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPGVFLSGS 113 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCCcEEecc
Confidence 999999999999999999999999988666554443
No 40
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=2.9e-21 Score=177.13 Aligned_cols=108 Identities=21% Similarity=0.397 Sum_probs=95.1
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
|+||+||+.+.+.++++|+.+|+++++||+++||+|+|++.+.+++.. + +++++..+.+.| ++.++|.|++.
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~---~--~~~~~~~~~~~g---~~~a~n~~~~~ 72 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF---P--EVRLIRNGENLG---FGAGNNQGIRE 72 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC---C--CeEEEecCCCcC---hHHHhhHHHhh
Confidence 689999999999999999999999889999999999999998887642 2 345556667777 89999999999
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEe
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQ 189 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g 189 (539)
+++|+++++|+|+.++|++++++++.+ +++++++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 110 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP 110 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc
Confidence 999999999999999999999999977 667777776
No 41
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.86 E-value=5.8e-20 Score=195.48 Aligned_cols=356 Identities=16% Similarity=0.199 Sum_probs=204.0
Q ss_pred CCCCCCcEEEEEecCCChh-hHHHHHHHHHcCCCCC--eEEEEEeCC------CCCCcHHHHHHHHHhC------CC---
Q psy11373 65 QEMPYPGVTILKPLTGTDP-NLYSNLETFFTMSYPK--YEICFCLED------DVDPAVPLVEKLCKKY------PN--- 126 (539)
Q Consensus 65 ~~~~~p~VSIIIP~~ne~~-~l~~~L~Sl~~q~yp~--~eIIvvdd~------s~D~t~~il~~l~~~~------p~--- 126 (539)
++...+.+-.++|||||.+ .|+.+|+|+..++||+ .-++||.|| .+-.|.+++.+...++ |.
T Consensus 20 ~~~~~~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~ 99 (527)
T PF03142_consen 20 PEFPDKFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLS 99 (527)
T ss_pred CCCCCceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcc
Confidence 3344556778999999985 5899999999999995 334444444 4556777776654310 10
Q ss_pred ------------------------------------ceEEEEec--------CcccCcchhhhhHHH-------------
Q psy11373 127 ------------------------------------VDTSVFIG--------GQVVGVNPKINNMEP------------- 149 (539)
Q Consensus 127 ------------------------------------~~~~~~~~--------~~~~g~~~K~~al~~------------- 149 (539)
+.+.+++. ....|..||...+..
T Consensus 100 ~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~ 179 (527)
T PF03142_consen 100 YVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNP 179 (527)
T ss_pred eEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCC
Confidence 11111111 001233335432211
Q ss_pred ----------------HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeecee-cCCCChHHHHHHHHhcc
Q psy11373 150 ----------------GYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFT-WDRKGFAAALEKTYFGT 210 (539)
Q Consensus 150 ----------------g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~-~~~~~~~~~~~~~~~~~ 210 (539)
|......||++.+|||+.+.|+.+.+|++.+ +++++.|+|.... ...++++...|..+|..
T Consensus 180 ~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~i 259 (527)
T PF03142_consen 180 MTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAI 259 (527)
T ss_pred CchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhH
Confidence 1222357999999999999999999999999 8999999995443 33568888888887764
Q ss_pred hhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCc
Q psy11373 211 AQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGV 290 (539)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~ 290 (539)
.|-..-..-
T Consensus 260 sh~l~Ka~E----------------------------------------------------------------------- 268 (527)
T PF03142_consen 260 SHHLQKAFE----------------------------------------------------------------------- 268 (527)
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 432111111
Q ss_pred ceecccccccccchhhhhhhhhhcccchhHHHHHhhhcc-ccccccchhhhchhhHhhhc--------------------
Q psy11373 291 GLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELG-------------------- 349 (539)
Q Consensus 291 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~g-------------------- 349 (539)
..+| +.|+.|++.++|-++++.-.
T Consensus 269 -----------------------------------s~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~ 313 (527)
T PF03142_consen 269 -----------------------------------SVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENP 313 (527)
T ss_pred -----------------------------------HHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhcc
Confidence 1112 36666766666666655411
Q ss_pred --ch-HHHHHhhhHhHHHHHHHHHc--CCceeeecccccccCCCCCHHHHHHHHHHHHHHHHHH-hhh-------hhhhc
Q psy11373 350 --GI-KTFGCYLAEDLFFARALSEL--GWKITISGQPAWQNSGYCDVTSFRNRLSRWVKLRIAM-APF-------TLVCE 416 (539)
Q Consensus 350 --g~-~~~~~~~~ED~~l~~~l~~~--G~ri~~~~~~~~~~~~~~s~~~~~~qr~RW~r~~~~~-~~~-------~~~~~ 416 (539)
++ ......++||..|+..+.++ |||..|++++...+..|.+++.|++||.||....... .-+ .....
T Consensus 314 ~dtlh~~nl~~lGEDR~LttLlLk~~~~~k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi~Nl~eLl~~~~l~g~~~f 393 (527)
T PF03142_consen 314 VDTLHQKNLLDLGEDRWLTTLLLKQFPGYKTEYVPSAVAYTDAPETFSVFLSQRRRWINSTIHNLFELLLVRDLCGFCCF 393 (527)
T ss_pred chHHHHHhhhhcchhHHHHHHHHhhCCCceEEEcccccccccCCccHHHHHHHhhhccchhHhhHhHHHHhhhhcceeee
Confidence 11 11123579999999998887 8899999999999999999999999999998732211 100 00000
Q ss_pred cchhHHHHHHHH----HHHHH--------hhhch-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHH-HHHHHHHH
Q psy11373 417 PLSECLILGAFA----SWAAS--------FLFQI-DPAVFYLVHILAWFLLDAILISIIQNGSLPFSKFHL-IVCWLFRE 482 (539)
Q Consensus 417 p~~~~~~~~~~~----~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 482 (539)
.....+...+++ +.+.. ..... ....+.++.+++-+.+-.++ ..+. ..++....| ++..+..+
T Consensus 394 sm~fvvfi~Li~tiI~P~ti~~iIylIv~~I~~s~~~piIsLiLLAiIyGL~aIl-~iL~--~r~wq~i~wmiiYll~~P 470 (527)
T PF03142_consen 394 SMRFVVFIDLIGTIILPATIVFIIYLIVVSIFSSDPVPIISLILLAIIYGLPAIL-FILR--SRRWQYIGWMIIYLLALP 470 (527)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhheehcccccccchHHHHHHHHHHHHhhh-heec--ccHHHHHHHHHHHHHHHH
Confidence 000000001111 00000 00000 00000000001101100111 0111 011111111 12222344
Q ss_pred hhhHHHHHHHHhC-CceEecCceeEeecCCceeecCCCcccceeecCC
Q psy11373 483 VLGPWVFFTSIWN-PVIKWRTRTYKLRWGELTNTDSPMIYWYLFTVPP 529 (539)
Q Consensus 483 ~~~~~~~~~a~~~-~~v~Wrg~~~~v~~~~~~~~~~~~~~~~~~~~~~ 529 (539)
++.+.+-++|++. +.++|.+.|-.++.+++-.....++.+++..||-
T Consensus 471 ~~n~vLpiYSfwn~DDFSWGtTR~v~ge~~k~~~~~~eg~fD~~~i~~ 518 (527)
T PF03142_consen 471 FFNFVLPIYSFWNFDDFSWGTTRVVVGEKGKKAHGEDEGKFDPSSIPM 518 (527)
T ss_pred HHHhHhhheeEEEecccccCCeeeecccccccccccccCCcCcccCcc
Confidence 4555555888887 6899999999999888877888999999888873
No 42
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.85 E-value=1e-20 Score=194.63 Aligned_cols=115 Identities=14% Similarity=0.264 Sum_probs=102.7
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHH
Q psy11373 69 YPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNME 148 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~ 148 (539)
.|.||||||+||+++.|++||+|+.+|+|+++|||+|||+|+|+|.++++++.++++++ +++. .++.| .+.+.|
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i--~vi~-~~n~G---~~~arN 78 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHV--RLLH-QANAG---VSVARN 78 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCE--EEEE-CCCCC---hHHHHH
Confidence 57899999999999999999999999999999999999999999999999998888876 3333 45667 788999
Q ss_pred HHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 149 PGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 149 ~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
.|++.|+||||+++|+|+.+.|++++++++.+ +++.+++.+
T Consensus 79 ~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 79 TGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999988 555566655
No 43
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.85 E-value=9.3e-21 Score=185.26 Aligned_cols=199 Identities=12% Similarity=0.068 Sum_probs=138.0
Q ss_pred EEEecCCCh-hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 74 ILKPLTGTD-PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 74 IIIP~~ne~-~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
+|||+||++ +.+.+||+|+.+| ..|||+|||+|+|.+.+..+. ..+ +++++..+++.| ++.++|.|++
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~~~iivvDn~s~~~~~~~~~~---~~~--~i~~i~~~~n~G---~~~a~N~g~~ 69 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---VDKVVVVDNSSGNDIELRLRL---NSE--KIELIHLGENLG---IAKALNIGIK 69 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---CCEEEEEeCCCCccHHHHhhc---cCC--cEEEEECCCcee---hHHhhhHHHH
Confidence 589999999 9999999999998 579999999998877655432 233 345667777888 8999999999
Q ss_pred hcCC---cEEEEEcCCCCCChHHHHHHH---Hhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhcccc
Q psy11373 153 AAKY---ELILISDSGIRMKEDTLLDMV---NHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQI 224 (539)
Q Consensus 153 ~a~~---d~i~~lDaD~~~~p~~L~~lv---~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
.+++ ||++++|+|+.++|++|++++ ..+ +++++++++....................
T Consensus 70 ~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 134 (237)
T cd02526 70 AALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYK--------------- 134 (237)
T ss_pred HHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCcc---------------
Confidence 9976 999999999999999999995 333 55666665522221111100000000000
Q ss_pred CcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccch
Q psy11373 225 PCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKG 304 (539)
Q Consensus 225 ~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~ 304 (539)
. . ...+.
T Consensus 135 ------------------------~-~-----~~~~~------------------------------------------- 141 (237)
T cd02526 135 ------------------------L-R-----IQKEG------------------------------------------- 141 (237)
T ss_pred ------------------------c-e-----ecccc-------------------------------------------
Confidence 0 0 00000
Q ss_pred hhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccc
Q psy11373 305 FAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQ 384 (539)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~ 384 (539)
...........|+++++||++++++|||++-...-+||.+++.|+.++|+++.+.|.+.++
T Consensus 142 -------------------~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 142 -------------------EEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred -------------------cCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 0000112234477889999999999999965444479999999999999999999998887
Q ss_pred cCCCCC
Q psy11373 385 NSGYCD 390 (539)
Q Consensus 385 ~~~~~s 390 (539)
+....+
T Consensus 203 h~~~~~ 208 (237)
T cd02526 203 HELGDK 208 (237)
T ss_pred ecccCc
Confidence 765544
No 44
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.84 E-value=1.2e-19 Score=174.68 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=100.2
Q ss_pred EEEecCCChhhHHHHHHHHHcCCC----CCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSY----PKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~y----p~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
||||+|||++.|.+||+++.+|.+ +++|||+|||+|+|+|.++++++.+++|.. ++++..+++.| |+.++|.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~-i~~i~~~~n~G---~~~a~~~ 76 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPAL-IRVLTLPKNRG---KGGAVRA 76 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEEcccCCC---cHHHHHH
Confidence 699999999999999999998754 679999999999999999999998888864 45566677777 8999999
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEee
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQM 190 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~ 190 (539)
|++.|++||++++|+|..++|++++++++.+ +++..+|.|.
T Consensus 77 g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 77 GMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 9999999999999999999999999999996 6666777773
No 45
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.83 E-value=2.3e-20 Score=171.25 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=102.2
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
||||+||+++.|.+||+|+.+|.++++||+++||+|+|+|.++++++...++.. +.++...++.| |..++|.|++.
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~-~~~~~~~~~~g---~~~~~n~~~~~ 76 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRR-VLVVRDKENGG---KAGALNAGLRH 76 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccce-EEEEEecccCC---chHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999876665432 33456666777 89999999999
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCC
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDR 196 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~ 196 (539)
+++|+++++|+|+.++|+++++++..+ +++++++++.......
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNG 121 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecC
Confidence 999999999999999999999996655 7888888886555433
No 46
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.82 E-value=4.7e-19 Score=175.30 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=89.4
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHc---CCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhh
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFT---MSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~---q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~a 146 (539)
|.||||||+||+++.|++||+|+.+ |.++++|||||||+|+|+|.++++++..++ + ++++. .++.| +..|
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~-~--i~~i~-~~~~G---~~~A 73 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF-N--LRFVS-EPDNG---IYDA 73 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC-C--EEEEE-CCCCC---HHHH
Confidence 5799999999999999999999975 346789999999999999999998875433 2 34443 34446 7889
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
+|.|++.|+|||++++|+|+...|+.++.+.+.. ++...++.|
T Consensus 74 ~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g 117 (248)
T PRK10063 74 MNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIG 117 (248)
T ss_pred HHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEe
Confidence 9999999999999999999999998766544333 333444554
No 47
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.81 E-value=1e-18 Score=175.39 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=99.4
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhH
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNM 147 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al 147 (539)
..|.||||||+||+++.+.+||+|+++|+|+++|||||||+|+| .++++++.+++...+++++..+.+.| ++.++
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G---~~~a~ 77 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSG---ACAVR 77 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCC---HHHHH
Confidence 35789999999999999999999999999999999999999985 56677776654444566667777888 78899
Q ss_pred HHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhhC--CCeeEEEe
Q psy11373 148 EPGYKAAKYELILISDSGIRMKEDTLLDMVNHLK--PGVGLVHQ 189 (539)
Q Consensus 148 ~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~~--~~vg~V~g 189 (539)
|.|++.|+||||+++|+|+.++|+.|+.+++.++ +..+++.+
T Consensus 78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~ 121 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYA 121 (279)
T ss_pred HHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEc
Confidence 9999999999999999999999999999999882 44455554
No 48
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.81 E-value=1.7e-17 Score=170.92 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=104.6
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcC-------CCC-CeEEEEEeCCCCCCcHHHHHHHHHhC--CCceEEEEecCc
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTM-------SYP-KYEICFCLEDDVDPAVPLVEKLCKKY--PNVDTSVFIGGQ 136 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q-------~yp-~~eIIvvdd~s~D~t~~il~~l~~~~--p~~~~~~~~~~~ 136 (539)
...|.+|||||+|||++.|+++|+++.++ +++ ++|||+|||+|+|+|.++++++.+++ |+.+++++..++
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 34567999999999999999999988653 233 69999999999999999999988765 444567677778
Q ss_pred ccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh----CCCeeEEEeec
Q psy11373 137 VVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL----KPGVGLVHQMP 191 (539)
Q Consensus 137 ~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~----~~~vg~V~g~~ 191 (539)
|.| |..|++.|++.++||+++++|+|...+|+.++++++.+ +++.++|.|..
T Consensus 147 N~G---~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR 202 (333)
T PTZ00260 147 NKG---KGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSR 202 (333)
T ss_pred CCC---hHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeec
Confidence 888 89999999999999999999999999999999999887 36788888843
No 49
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=182.71 Aligned_cols=215 Identities=18% Similarity=0.263 Sum_probs=153.7
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHH
Q psy11373 69 YPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNME 148 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~ 148 (539)
.|.+++||++||..+.+.+||+++.+|+|+..++++|||+|+|++.+.+++.. +|++ +++..++|.|. +.+.|
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~~v--~~i~~~~NlG~---agg~n 74 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF--FPNV--RLIENGENLGF---AGGFN 74 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc--CCcE--EEEEcCCCccc---hhhhh
Confidence 47899999999999999999999999999988888999999999999887632 5655 66788889995 66667
Q ss_pred HHHHhcCCc---EEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccc
Q psy11373 149 PGYKAAKYE---LILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQ 223 (539)
Q Consensus 149 ~g~~~a~~d---~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (539)
.|++.|.++ |++++|.|+.++|++|+++++.+ ++..+++.......+......... .... .
T Consensus 75 ~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-~------------ 140 (305)
T COG1216 75 RGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESD-G------------ 140 (305)
T ss_pred HHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-cccc-c------------
Confidence 888888444 99999999999999999999999 566666666443333332222211 0000 0
Q ss_pred cCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccc
Q psy11373 224 IPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRK 303 (539)
Q Consensus 224 ~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~ 303 (539)
..+ + .+...
T Consensus 141 --------------------~~~--------------~-------------------------------------~~~~~ 149 (305)
T COG1216 141 --------------------LTG--------------G-------------------------------------WRASP 149 (305)
T ss_pred --------------------ccc--------------c-------------------------------------ceecc
Confidence 000 0 00000
Q ss_pred hhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeeccccc
Q psy11373 304 GFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAW 383 (539)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~ 383 (539)
..... ... .. .......+.|+++++||++++++||++.-.....||.++|.|++++|+++.++|.+.+
T Consensus 150 ~~~~~--~~~--~~--------~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i 217 (305)
T COG1216 150 LLEIA--PDL--SS--------YLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAII 217 (305)
T ss_pred ccccc--ccc--cc--------hhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEE
Confidence 00000 000 00 0000113569999999999999999998666789999999999999999999999777
Q ss_pred ccCC
Q psy11373 384 QNSG 387 (539)
Q Consensus 384 ~~~~ 387 (539)
.|..
T Consensus 218 ~H~~ 221 (305)
T COG1216 218 YHKI 221 (305)
T ss_pred EEec
Confidence 6653
No 50
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.80 E-value=2.8e-17 Score=168.90 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=98.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHH---cCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhh
Q psy11373 69 YPGVTILKPLTGTDPNLYSNLETFF---TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKIN 145 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~~l~~~L~Sl~---~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~ 145 (539)
.+++|||||+|||++.|+++++++. +|..+++|||+|||+|+|+|.++++++.++.+ .++..+...++.| |.+
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G---~~~ 80 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYG---QHS 80 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCC---HHH
Confidence 3569999999999999999998874 34455799999999999999999998765432 2333344566777 899
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEeec
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMP 191 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g~~ 191 (539)
|++.|+++|++|+++++|+|...+|+.+.++++.++++..+|.+..
T Consensus 81 A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r 126 (325)
T PRK10714 81 AIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVR 126 (325)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999954566776643
No 51
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.78 E-value=2.6e-19 Score=163.65 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=93.8
Q ss_pred EEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 73 TILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 73 SIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
|||||+||+.+.|.+||+|+.+|++++.||||+||+|+|++.++++++.+..+ +++++..+++.| +..++|.|++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~--~i~~i~~~~n~g---~~~~~n~~~~ 75 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDP--NIRYIRNPENLG---FSAARNRGIK 75 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCST--TEEEEEHCCCSH---HHHHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccc--cccccccccccc---cccccccccc
Confidence 79999999999999999999999888899999999999999999999876334 456667777776 8999999999
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
.++++|++++|+|+.++|++|+++++.+ +.+.+++.+
T Consensus 76 ~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 113 (169)
T PF00535_consen 76 HAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIG 113 (169)
T ss_dssp H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence 9999999999999999999999999999 445555544
No 52
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.77 E-value=4.1e-18 Score=171.81 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=82.3
Q ss_pred EEEEecCCChh------hHHHHHHHHHc-CCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhh
Q psy11373 73 TILKPLTGTDP------NLYSNLETFFT-MSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKIN 145 (539)
Q Consensus 73 SIIIP~~ne~~------~l~~~L~Sl~~-q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~ 145 (539)
|||||++++.. .+..||+++.+ +..+++||||+||+|++.+.+.++++.++..... ++........=+++.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~--~i~~~~~~~~f~~a~ 78 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIR--YIRHEDNGEPFSRAK 78 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceE--EEEcCCCCCCcCHHH
Confidence 79999999883 46677888876 4456799999999999998888888877665431 222222221113889
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHH
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~ 178 (539)
++|.|++.|++|+|+++|+|+.++|++++++++
T Consensus 79 arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 79 ARNIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 999999999999999999999999999999999
No 53
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.77 E-value=7e-18 Score=158.18 Aligned_cols=165 Identities=18% Similarity=0.271 Sum_probs=126.1
Q ss_pred EEEecCCChhhHHHHHHHHHcCCC--CCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSY--PKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~y--p~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
||||+||+++.+.+||+|+.+|.+ +.+|||++||+|+|++.++++++.++++.. +++..+++.| |..++|.|+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~--~~~~~~~n~G---~~~a~n~g~ 75 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRV--RVIRLSRNFG---KGAAVRAGF 75 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCe--EEEEccCCCC---ccHHHHHHH
Confidence 689999999999999999999987 579999999999999999999998888765 4567777888 899999999
Q ss_pred HhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCC---CChHHHHHHHHhcchhHHHHHhhhccccCcC
Q psy11373 152 KAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDR---KGFAAALEKTYFGTAQARIYLAANFLQIPCH 227 (539)
Q Consensus 152 ~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (539)
+.+++|+++++|+|+.++|++|++++..+ +++.++|.|.....+. .....+.....+. +.. ..+
T Consensus 76 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~----- 143 (185)
T cd04179 76 KAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFN------FLI-RLL----- 143 (185)
T ss_pred HHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHH------HHH-HHH-----
Confidence 99999999999999999999999999986 6677888885444433 2222222211111 000 000
Q ss_pred CCCccCCCCCCCcccccccceeeEehHHHHHh--CCCcc
Q psy11373 228 TGCTLNDKAPNSIFMPFTGMSTLTRKSIFDEL--GGIKT 264 (539)
Q Consensus 228 ~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~v--Ggf~~ 264 (539)
.........|++.++||++++++ |+++.
T Consensus 144 ---------~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~ 173 (185)
T cd04179 144 ---------LGVRISDTQSGFRLFRREVLEALLSLLESN 173 (185)
T ss_pred ---------cCCCCcCCCCceeeeHHHHHHHHHhhcccc
Confidence 01222346688889999999999 45433
No 54
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.77 E-value=4.8e-18 Score=159.32 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=124.2
Q ss_pred EEEecCCChhhHHHHHHHHHcC---CCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTM---SYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPG 150 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q---~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g 150 (539)
||||+|||++.|.++|+++.++ .++.+||+++||+|+|+|.++++++.++++++ +++...++.| |.+++|.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i--~~i~~~~n~G---~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRV--KVIRLSRNFG---QQAALLAG 75 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCE--EEEEecCCCC---cHHHHHHH
Confidence 6999999999999998888654 35679999999999999999999998888865 4455566777 89999999
Q ss_pred HHhcCCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcCCCC
Q psy11373 151 YKAAKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGC 230 (539)
Q Consensus 151 ~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (539)
++.+++||++++|+|+.++|++++++++.++++.++|.|...... ++...+.....+... .....
T Consensus 76 ~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~-~~~~~~~~~~~~~~~--~~~~~------------ 140 (181)
T cd04187 76 LDHARGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRK-ESWLKRLTSKLFYRL--INKLS------------ 140 (181)
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCc-chHHHHHHHHHHHHH--HHHHc------------
Confidence 999999999999999999999999999988666778877444333 333333221111100 00000
Q ss_pred ccCCCCCCCcccccccceeeEehHHHHHhCCCccccc
Q psy11373 231 TLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGC 267 (539)
Q Consensus 231 ~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~ 267 (539)
........|...++||++++++|+|++...
T Consensus 141 -------~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~ 170 (181)
T cd04187 141 -------GVDIPDNGGDFRLMDRKVVDALLLLPERHR 170 (181)
T ss_pred -------CCCCCCCCCCEEEEcHHHHHHHHhcCCCCc
Confidence 111122446667999999999999987543
No 55
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.76 E-value=6.1e-18 Score=170.39 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=82.3
Q ss_pred cCCCh-hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc--
Q psy11373 78 LTGTD-PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA-- 154 (539)
Q Consensus 78 ~~ne~-~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a-- 154 (539)
+||.+ +.|.+||+|+.+|. .+||||||+|+|+ +.++++.++++++ +++..++|.| .+.++|.|++.|
T Consensus 2 tyn~~~~~l~~~l~sl~~q~---~~iiVVDN~S~~~--~~~~~~~~~~~~i--~~i~~~~N~G---~a~a~N~Gi~~a~~ 71 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQV---DRIIAVDNSPHSD--QPLKNARLRGQKI--ALIHLGDNQG---IAGAQNQGLDASFR 71 (281)
T ss_pred ccCccHHHHHHHHHHHHhcC---CEEEEEECcCCCc--HhHHHHhccCCCe--EEEECCCCcc---hHHHHHHHHHHHHH
Confidence 78974 78999999999985 5899999999765 3334444456654 5567778888 688999999988
Q ss_pred -CCcEEEEEcCCCCCChHHHHHHHHhh-C-C-CeeEEEe
Q psy11373 155 -KYELILISDSGIRMKEDTLLDMVNHL-K-P-GVGLVHQ 189 (539)
Q Consensus 155 -~~d~i~~lDaD~~~~p~~L~~lv~~~-~-~-~vg~V~g 189 (539)
++||++++|+|+.+++++++++++.+ + + +++++++
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 110 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGP 110 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECC
Confidence 79999999999999999999999988 3 3 6777665
No 56
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.76 E-value=1.2e-17 Score=158.56 Aligned_cols=141 Identities=20% Similarity=0.263 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhccccCcCCCCccCCCC
Q psy11373 158 LILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKA 236 (539)
Q Consensus 158 ~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (539)
||+++|+|+.++||+++++++.+ +|+++++++.....+.+++.++.+..++...+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 56 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISH------------------------ 56 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhh------------------------
Confidence 68999999999999999999999 78999999966655556666666655432000
Q ss_pred CCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceecccccccccchhhhhhhhhhccc
Q psy11373 237 PNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAALEKTYFGT 316 (539)
Q Consensus 237 ~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 316 (539)
T Consensus 57 -------------------------------------------------------------------------------- 56 (193)
T PF13632_consen 57 -------------------------------------------------------------------------------- 56 (193)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHhhhcc-ccccccchhhhchhhHhhhcchHHHHHhhhHhHHHHHHHHHcCCceeeecccccccCCCCCHHHHH
Q psy11373 317 AQARIYLAANFLQ-IPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDVTSFR 395 (539)
Q Consensus 317 ~~~~~~~~~~~~g-~~~~~G~~~~~rr~~l~~~gg~~~~~~~~~ED~~l~~~l~~~G~ri~~~~~~~~~~~~~~s~~~~~ 395 (539)
.......+..| ..++.|+++++|+++++++||++ ....++||.+++.++.++||++.+.|++.++++.|+++++++
T Consensus 57 --~~~~~~~~~~~~~~~~~G~~~~~r~~~l~~vg~~~-~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~ 133 (193)
T PF13632_consen 57 --GLSRLSQSSLGRPLFLSGSGMLFRREALREVGGFD-DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFI 133 (193)
T ss_pred --hhhHHHHHhcCCCccccCcceeeeHHHHHHhCccc-ccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHH
Confidence 00001111222 24567999999999999999999 666889999999999999999999999988999999999999
Q ss_pred HHHHHHHHHH
Q psy11373 396 NRLSRWVKLR 405 (539)
Q Consensus 396 ~qr~RW~r~~ 405 (539)
+||.||.+..
T Consensus 134 ~Qr~RW~~g~ 143 (193)
T PF13632_consen 134 RQRRRWARGA 143 (193)
T ss_pred HHHHHHHhhh
Confidence 9999999873
No 57
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.74 E-value=7.9e-17 Score=163.93 Aligned_cols=118 Identities=13% Similarity=0.150 Sum_probs=97.5
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCC-C-CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEE-ecCcccCcchhh
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSY-P-KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVF-IGGQVVGVNPKI 144 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~y-p-~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~-~~~~~~g~~~K~ 144 (539)
..|++|||||+|||++.|.+||+++.+|.+ + ..|||||||+|+|+|.++++++..+.-.. ...+ ..+.+.| |.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~-~~~~~~~~~n~G---kg 104 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSR-EEILPELPPRPG---KG 104 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcc-hhhhhccccCCC---HH
Confidence 457899999999999999999999998764 2 58999999999999999998865432110 1111 1244555 99
Q ss_pred hhHHHHHHhcCCcEEEEEcCCCC-CChHHHHHHHHhh--CCCeeEEEe
Q psy11373 145 NNMEPGYKAAKYELILISDSGIR-MKEDTLLDMVNHL--KPGVGLVHQ 189 (539)
Q Consensus 145 ~al~~g~~~a~~d~i~~lDaD~~-~~p~~L~~lv~~~--~~~vg~V~g 189 (539)
.|+|.|++.+++|+++++|+|+. ++|++++++++++ ++++++|.|
T Consensus 105 ~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 105 EALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred HHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 99999999999999999999997 8999999999998 678999987
No 58
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.3e-15 Score=154.64 Aligned_cols=231 Identities=21% Similarity=0.288 Sum_probs=163.4
Q ss_pred CCCCcEEEEEecCCChhh-----HHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHH-----HHHhCC-CceEEEEec
Q psy11373 67 MPYPGVTILKPLTGTDPN-----LYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEK-----LCKKYP-NVDTSVFIG 134 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~-----l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~-----l~~~~p-~~~~~~~~~ 134 (539)
++.....|++|+|||+.. ++.+-+|+.+...- ++++.|..|. .|+-....|+ ++++-. ..++-...+
T Consensus 141 p~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs-~dpdialAEq~a~~~l~~e~~g~~~ifYRrR 219 (736)
T COG2943 141 PDLHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDS-RDPDIALAEQKAWAELCRELGGEGNIFYRRR 219 (736)
T ss_pred CcccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCC-CCchhhhhHHHHHHHHHHHhCCCCceeeehH
Confidence 334468999999999964 68888898775433 4777766654 5554444433 233322 122222244
Q ss_pred CcccCcchhhhhHHHHHHh--cCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcc
Q psy11373 135 GQVVGVNPKINNMEPGYKA--AKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGT 210 (539)
Q Consensus 135 ~~~~g~~~K~~al~~g~~~--a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~ 210 (539)
.+|.+. |++|+..-.+. ..++|.+++|||..+.+|++.++++.+ +|+.|+++..|...+.+++..+.|+..-.
T Consensus 220 r~n~~R--KaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL~AR~qQFatr- 296 (736)
T COG2943 220 RRNVKR--KAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTLYARCQQFATR- 296 (736)
T ss_pred hhhhcc--cccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchHHHHHHHHHHH-
Confidence 555555 99999888776 589999999999999999999999999 99999999999999999999998865321
Q ss_pred hhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCc
Q psy11373 211 AQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGV 290 (539)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~ 290 (539)
+.|... +. +
T Consensus 297 ----------------vYGpl~-------------~~-----------------------------------------G- 305 (736)
T COG2943 297 ----------------VYGPLF-------------TA-----------------------------------------G- 305 (736)
T ss_pred ----------------HhchHH-------------hh-----------------------------------------h-
Confidence 111000 00 0
Q ss_pred ceecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHH------H-HHhhhHhHH
Q psy11373 291 GLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKT------F-GCYLAEDLF 363 (539)
Q Consensus 291 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~------~-~~~~~ED~~ 363 (539)
+-|.+ .|-.-.+|.+.++|.++|.+..|++. | ...+..|+.
T Consensus 306 -------LawW~-------------------------~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfv 353 (736)
T COG2943 306 -------LAWWQ-------------------------LGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFV 353 (736)
T ss_pred -------hHHHh-------------------------ccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHH
Confidence 00111 11234568888888888887755532 2 345789999
Q ss_pred HHHHHHHcCCceeeeccccc-ccCCCCCHHHHHHHHHHHHHH
Q psy11373 364 FARALSELGWKITISGQPAW-QNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 364 l~~~l~~~G~ri~~~~~~~~-~~~~~~s~~~~~~qr~RW~r~ 404 (539)
-+..+++.||.+...++.-. ++|.|+++-++..|-.||++.
T Consensus 354 EAALmRRaGW~v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~G 395 (736)
T COG2943 354 EAALMRRAGWGVWIAYDLDGSYEELPPNLLDELKRDRRWCHG 395 (736)
T ss_pred HHHHHhhcCceEEEeccCCCchhhCCchHHHHHhhhhHhhhc
Confidence 99999999999999987544 566899999999999999984
No 59
>PLN02893 Cellulose synthase-like protein
Probab=99.70 E-value=2.3e-15 Score=164.47 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=115.1
Q ss_pred chhhhhHHHHHHh----cCCcEEEEEcCCCCC-ChHHHHHHHHhh-CC----CeeEEEeeceecC--CCChHHHHHHHHh
Q psy11373 141 NPKINNMEPGYKA----AKYELILISDSGIRM-KEDTLLDMVNHL-KP----GVGLVHQMPFTWD--RKGFAAALEKTYF 208 (539)
Q Consensus 141 ~~K~~al~~g~~~----a~~d~i~~lDaD~~~-~p~~L~~lv~~~-~~----~vg~V~g~~~~~~--~~~~~~~~~~~~~ 208 (539)
+.|++|||.+++. +++++|+++|+|..+ +|+.+++.+-.| |+ +++.||..+...+ +++....-...++
T Consensus 280 h~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff 359 (734)
T PLN02893 280 HFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLF 359 (734)
T ss_pred ccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHH
Confidence 5699999999996 689999999999997 789999999988 55 6999997554432 3332222222222
Q ss_pred cchhHHHHHhhhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccC
Q psy11373 209 GTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKP 288 (539)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p 288 (539)
...+ ++..| .++. .+.|.+.++||+++....+ . .+ .+++
T Consensus 360 ~~~~------------~glDG-------~~gp--~y~GTGc~~RR~al~G~~~--~---~~-----~~~~---------- 398 (734)
T PLN02893 360 QINM------------IGMDG-------LAGP--NYVGTGCFFRRRVFYGGPS--S---LI-----LPEI---------- 398 (734)
T ss_pred HHHh------------hcccc-------cCCc--eeeccceEEEHHHhcCCCc--c---cc-----chhh----------
Confidence 2100 00111 1111 3678888999999832211 0 00 0000
Q ss_pred CcceecccccccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhh-----------------cch
Q psy11373 289 GVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDEL-----------------GGI 351 (539)
Q Consensus 289 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~-----------------gg~ 351 (539)
.+.-.++. ......+++.+++. +||
T Consensus 399 -----------------~~~~~~~~---------------------~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~ 440 (734)
T PLN02893 399 -----------------PELNPDHL---------------------VDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGF 440 (734)
T ss_pred -----------------hhcccccc---------------------cccccchHHHHHHhhhccccccccCCccccccce
Confidence 00000000 00011222322221 344
Q ss_pred HHHHHhhhHhHHHHHHHHHcCCceeeec--ccccccCCCCCHHHHHHHHHHHHHH
Q psy11373 352 KTFGCYLAEDLFFARALSELGWKITISG--QPAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 352 ~~~~~~~~ED~~l~~~l~~~G~ri~~~~--~~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
. .+.++||+..|.+++.+|||.+|.+ .+......|.++.+++.||.||++.
T Consensus 441 ~--ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G 493 (734)
T PLN02893 441 R--YGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVG 493 (734)
T ss_pred E--eccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhh
Confidence 4 5678999999999999999999974 3556789999999999999999983
No 60
>KOG2978|consensus
Probab=99.66 E-value=5.1e-15 Score=133.69 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=98.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHH---cCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhh
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFF---TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~---~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~a 146 (539)
++.|||+|+|||.++|.-++.-+. .+.--++|||+|||+|.|+|.++++++++.|..-++.+..+....|. ..|
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGL---gtA 79 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGL---GTA 79 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccc---hHH
Confidence 568999999999999864444332 23333699999999999999999999998887766666677777774 667
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeece
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPF 192 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~ 192 (539)
...|+++|+|+|++++|||-..+|.++.++.+.. +.+.++|.|..+
T Consensus 80 y~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 80 YIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred HHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 7899999999999999999999999999999988 666789998443
No 61
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.62 E-value=1.4e-14 Score=129.42 Aligned_cols=111 Identities=26% Similarity=0.385 Sum_probs=93.5
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
|+||++|+.+.+.++++|+.++.++..|++++||+++|++.+.++++.+.... ........+.| ++.++|.+++.
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g---~~~~~~~~~~~ 75 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPR--VIRVINEENQG---LAAARNAGLKA 75 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCC--eEEEEecCCCC---hHHHHHHHHHH
Confidence 68999999999999999999999888999999999999999999887654222 23345555666 88999999999
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEe
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQ 189 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g 189 (539)
+++|+++++|+|+.++|++++.++..+ +++.+++++
T Consensus 76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 999999999999999999999985444 667777766
No 62
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=3.6e-14 Score=132.56 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=92.2
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHH
Q psy11373 69 YPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNME 148 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~ 148 (539)
.|.+|||||+||++..|.++|+|+.+|+|+++|||+|||+|+|+|.++++++.++.+. .......++.| +..++|
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~--~~~~~~~~~~g---~~~~~~ 76 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVR--VIRLINERNGG---LGAARN 76 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcce--EEEeecccCCC---hHHHHH
Confidence 4789999999999999999999999999998999999999999999999998776522 23334566667 899999
Q ss_pred HHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 149 PGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 149 ~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
.++..+.+|++.++|+|.. +++.+..+.+..
T Consensus 77 ~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 77 AGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred hhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 9999999999999999999 999888855543
No 63
>PLN02195 cellulose synthase A
Probab=99.53 E-value=4e-13 Score=149.37 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=42.9
Q ss_pred HhhhHhHHHHHHHHHcCCceeeecc--cccccCCCCCHHHHHHHHHHHHH
Q psy11373 356 CYLAEDLFFARALSELGWKITISGQ--PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 356 ~~~~ED~~l~~~l~~~G~ri~~~~~--~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
+.++||+..|.+++.+|||.+|.+. +......|.++.+++.||.||++
T Consensus 670 GSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~ 719 (977)
T PLN02195 670 GSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWAL 719 (977)
T ss_pred cceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999743 45678899999999999999998
No 64
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.50 E-value=2.2e-13 Score=133.16 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=83.3
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHH
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPG 150 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g 150 (539)
++||+||+|||++.|++||+|+..|. .|||||||+|+|+|.+++++. ++ +++.. .+.| ++.+.|.|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~---~eiivvD~gStD~t~~i~~~~-----~~--~v~~~-~~~g---~~~~~n~~ 66 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV---DEIIVVDSGSTDRTVEIAKEY-----GA--KVYQR-WWDG---FGAQRNFA 66 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc---CEEEEEeCCCCccHHHHHHHc-----CC--EEEEC-CCCC---hHHHHHHH
Confidence 48999999999999999999998773 399999999999999988742 23 33344 5555 68888999
Q ss_pred HHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 151 YKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 151 ~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
++.+++|+++++|+|..++|++++++.+.+
T Consensus 67 ~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 67 LELATNDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred HHhCCCCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 999999999999999999999999999988
No 65
>PLN02189 cellulose synthase
Probab=99.49 E-value=8.3e-12 Score=139.76 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=43.7
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee--cccccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS--GQPAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~--~~~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
++.++||+..|.+++.+|||.+|. +.+......|.++.+++.||.||++
T Consensus 734 YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~ 784 (1040)
T PLN02189 734 YGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWAL 784 (1040)
T ss_pred ccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhh
Confidence 445799999999999999999998 3466678999999999999999999
No 66
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=99.43 E-value=3.7e-11 Score=135.09 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=43.8
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee-cc-cccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS-GQ-PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~-~~-~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
++.++||+..|.+++.+|||.+|. |. +......|.++.+++.||.||++
T Consensus 773 YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~ 823 (1079)
T PLN02638 773 YGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
T ss_pred ecceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhh
Confidence 456799999999999999999998 54 55678999999999999999998
No 67
>PLN02248 cellulose synthase-like protein
Probab=99.39 E-value=5.6e-11 Score=133.60 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=43.6
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee--cccccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS--GQPAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~--~~~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
...++||+..|.+++.+|||.+|. +.+......|.++.+++.||.||++
T Consensus 832 YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~ 882 (1135)
T PLN02248 832 YGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWAT 882 (1135)
T ss_pred ecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhh
Confidence 445799999999999999999997 3456678999999999999999998
No 68
>PLN02436 cellulose synthase A
Probab=99.35 E-value=4.6e-10 Score=126.02 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=43.7
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee-ccc-ccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS-GQP-AWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~-~~~-~~~~~~~~s~~~~~~qr~RW~r 403 (539)
++.++||+..|.+++.+|||..|. |.. ......|.++.+++.||.||++
T Consensus 789 YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~ 839 (1094)
T PLN02436 789 YGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 839 (1094)
T ss_pred ccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhh
Confidence 457799999999999999999997 554 4578899999999999999998
No 69
>PLN02190 cellulose synthase-like protein
Probab=99.29 E-value=3.5e-10 Score=123.61 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=43.5
Q ss_pred HHhhhHhHHHHHHHHHcCCceeeec--ccccccCCCCCHHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITISG--QPAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~~--~~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
.+.++||+..|.+++.+|||..|.. .+......|.++.+.+.||.||++.
T Consensus 455 ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G 506 (756)
T PLN02190 455 YDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATG 506 (756)
T ss_pred cceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhh
Confidence 5577999999999999999999973 3455677899999999999999993
No 70
>KOG3738|consensus
Probab=99.26 E-value=3.4e-12 Score=127.49 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=151.1
Q ss_pred CCCCcEEEEEecCCChh-hHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchh
Q psy11373 67 MPYPGVTILKPLTGTDP-NLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPK 143 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~-~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K 143 (539)
.+.|+.||||..+||+. .|.+++.|+++++-++ .|||+|||.|.|++. .+.+ .+.|+ ++++.+.++.| -
T Consensus 121 ~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped--~~~L-~ri~k--vr~LRN~~ReG---L 192 (559)
T KOG3738|consen 121 VDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPED--GKLL-KRIPK--VRVLRNNEREG---L 192 (559)
T ss_pred cCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHH--HHHH-hhhhe--eeeecccchhh---h
Confidence 36788999999999996 4799999999976555 799999999998753 3333 34564 46677788888 4
Q ss_pred hhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhhcc
Q psy11373 144 INNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFL 222 (539)
Q Consensus 144 ~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (539)
....+.|...|++.++.|+|+.|.+..+||+-|++.. ....-+|+.+-...+.++|.-
T Consensus 193 irSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y--------------------- 251 (559)
T KOG3738|consen 193 IRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSY--------------------- 251 (559)
T ss_pred hhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeeccccccccccccc---------------------
Confidence 6677889999999999999999999999999999998 333445555444455554321
Q ss_pred ccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceeccccccccc
Q psy11373 223 QIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTWDR 302 (539)
Q Consensus 223 ~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w~~ 302 (539)
..+.-+-=||||= -. +++|.+
T Consensus 252 -----------------------------~~asadLrGGFDW------------------sL------------hF~We~ 272 (559)
T KOG3738|consen 252 -----------------------------VGASADLRGGFDW------------------SL------------HFKWEQ 272 (559)
T ss_pred -----------------------------ccchhhhcCCcce------------------EE------------EEEehh
Confidence 1111122366642 11 134544
Q ss_pred chhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHH-hhhHhHHHHHHHHHcCCceeeeccc
Q psy11373 303 KGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGC-YLAEDLFFARALSELGWKITISGQP 381 (539)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~-~~~ED~~l~~~l~~~G~ri~~~~~~ 381 (539)
-..+.+-+. .+ -......|.+-|+..++.|+-|.++|-++...+ .-+|.++++.|++.-|..+...|-.
T Consensus 273 ~~~eqr~sr--~~--------Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCS 342 (559)
T KOG3738|consen 273 MQLEQRESR--AD--------PTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCS 342 (559)
T ss_pred cCHHHHhhc--cC--------CCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEecc
Confidence 333211100 00 001122367779999999999999999885433 3589999999999999988777643
No 71
>KOG2571|consensus
Probab=99.25 E-value=9.1e-10 Score=121.92 Aligned_cols=156 Identities=20% Similarity=0.303 Sum_probs=114.0
Q ss_pred hhhhHHHHHHhc--CCcEEEEEcCCCCCChHHHHHHHHhh--CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHh
Q psy11373 143 KINNMEPGYKAA--KYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLA 218 (539)
Q Consensus 143 K~~al~~g~~~a--~~d~i~~lDaD~~~~p~~L~~lv~~~--~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (539)
+...++...+.. .-++|+++|+|+.+.|+.+-+|++.| ||++|.++| ......+++....|..+|.-.|
T Consensus 426 ~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~~w~v~~Q~FEY~Ish------ 498 (862)
T KOG2571|consen 426 HRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGGSWVVAYQNFEYAISH------ 498 (862)
T ss_pred HHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCCceEEeHHHHHHHHHH------
Confidence 333444444444 45688999999999999999999999 899999999 4445566676666666553111
Q ss_pred hhccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceeccccc
Q psy11373 219 ANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPF 298 (539)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~ 298 (539)
+.
T Consensus 499 -~l----------------------------------------------------------------------------- 500 (862)
T KOG2571|consen 499 -NL----------------------------------------------------------------------------- 500 (862)
T ss_pred -HH-----------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhc-----------chHHHHHhhhHhHHHHHH
Q psy11373 299 TWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELG-----------GIKTFGCYLAEDLFFARA 367 (539)
Q Consensus 299 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~g-----------g~~~~~~~~~ED~~l~~~ 367 (539)
++..+..++ .+.|+.|+..++|-++|..-- +-.......+||..|+.+
T Consensus 501 --------~Ka~ESvFG-------------~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~ 559 (862)
T KOG2571|consen 501 --------QKATESVFG-------------CVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTL 559 (862)
T ss_pred --------HHhhhhhce-------------eEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHH
Confidence 111122211 247888999999997775542 111123347999999999
Q ss_pred HHHcCCceeeecccccccCCCCCHHHHHHHHHHHHHH
Q psy11373 368 LSELGWKITISGQPAWQNSGYCDVTSFRNRLSRWVKL 404 (539)
Q Consensus 368 l~~~G~ri~~~~~~~~~~~~~~s~~~~~~qr~RW~r~ 404 (539)
+.++||++.|+..+...++.|.++.+++.||.||...
T Consensus 560 llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 560 LLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred HHhccceeeeeccccccccCcHhHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999863
No 72
>KOG3736|consensus
Probab=99.23 E-value=3e-12 Score=137.17 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=155.1
Q ss_pred CCCCCcEEEEEecCCChhh-HHHHHHHHHcCCCCC--eEEEEEeCCCCCCc-HHHHHHHHHhCCCceEEEEecCcccCcc
Q psy11373 66 EMPYPGVTILKPLTGTDPN-LYSNLETFFTMSYPK--YEICFCLEDDVDPA-VPLVEKLCKKYPNVDTSVFIGGQVVGVN 141 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~~~-l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t-~~il~~l~~~~p~~~~~~~~~~~~~g~~ 141 (539)
....|.+||||+.+||... +.+++.|+.+.+-+. .|||+|||.|+.+- ...++++.+++.. ++++...++.|
T Consensus 138 ~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~--v~i~r~~~R~G-- 213 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK--VRILRTKKREG-- 213 (578)
T ss_pred ccccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc--eeEEeecchhh--
Confidence 3457899999999999975 688999998765443 79999999998766 5668888777776 56667778888
Q ss_pred hhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhh
Q psy11373 142 PKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAAN 220 (539)
Q Consensus 142 ~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (539)
+..|...|.+.|+||+++|+||.|.+...||+-+++.. ....-+|+..-...+.+++.-.-
T Consensus 214 -LIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~----------------- 275 (578)
T KOG3736|consen 214 -LIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEK----------------- 275 (578)
T ss_pred -hHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecc-----------------
Confidence 89999999999999999999999999999999999999 44445555433344444432111
Q ss_pred ccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhcccCCcceeccccccc
Q psy11373 221 FLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNHLKPGVGLVHQMPFTW 300 (539)
Q Consensus 221 ~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~~~p~~~~~~~~~~~w 300 (539)
..-...|||+=...+ .| +..|...
T Consensus 276 ---------------------------------~~~~~rGgFdW~l~f------------~w--~~lP~~~--------- 299 (578)
T KOG3736|consen 276 ---------------------------------QSELMRGGFDWELTF------------KW--ERLPLPE--------- 299 (578)
T ss_pred ---------------------------------cCccceeeeecceeE------------Ee--ccCCccH---------
Confidence 101112444211100 00 0111111
Q ss_pred ccchhhhhhhhhhcccchhHHHHHhhhccccccccchhhhchhhHhhhcchHHHHH-hhhHhHHHHHHHHHcCCceeeec
Q psy11373 301 DRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGMSTLTRKSIFDELGGIKTFGC-YLAEDLFFARALSELGWKITISG 379 (539)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~rr~~l~~~gg~~~~~~-~~~ED~~l~~~l~~~G~ri~~~~ 379 (539)
.+.. + ........|..-|+..++.|+-|.++|++|.-.+ .-+|.++|+.|+++-|.++...|
T Consensus 300 ~~~~-------------~----~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~P 362 (578)
T KOG3736|consen 300 EKRR-------------E----LPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVP 362 (578)
T ss_pred hhcc-------------c----CCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecC
Confidence 0000 0 0012233467779999999999999999985433 45799999999999999998887
Q ss_pred cccc
Q psy11373 380 QPAW 383 (539)
Q Consensus 380 ~~~~ 383 (539)
-..+
T Consensus 363 CSrV 366 (578)
T KOG3736|consen 363 CSRV 366 (578)
T ss_pred ccce
Confidence 6444
No 73
>PLN02400 cellulose synthase
Probab=99.21 E-value=4.4e-09 Score=118.72 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=44.6
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee--cccccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS--GQPAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~--~~~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
++.++||+..|.+++.+|||.+|. +.+......|.++.+++.||.||++
T Consensus 778 YGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~ 828 (1085)
T PLN02400 778 YGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 828 (1085)
T ss_pred ccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999998 3567789999999999999999998
No 74
>KOG3737|consensus
Probab=99.17 E-value=2.4e-11 Score=121.18 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=94.2
Q ss_pred CCCCCcEEEEEecCCCh-hhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcH-HHHHHHHHhCCCceEEEEecCcccCcc
Q psy11373 66 EMPYPGVTILKPLTGTD-PNLYSNLETFFTMSYPK--YEICFCLEDDVDPAV-PLVEKLCKKYPNVDTSVFIGGQVVGVN 141 (539)
Q Consensus 66 ~~~~p~VSIIIP~~ne~-~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~-~il~~l~~~~p~~~~~~~~~~~~~g~~ 141 (539)
+.+.|.+||||..+||. ..|.+++.|++..+-++ .||++|||.|+.+-. +.+.++...+... +.++.+.++.|
T Consensus 151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGl-VkV~Rne~REG-- 227 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGL-VKVFRNERREG-- 227 (603)
T ss_pred cccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCE-EEEEecchhhh--
Confidence 46788999999999999 56899999998765444 699999999987654 7788887777664 55667777888
Q ss_pred hhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 142 PKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 142 ~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
-.++...|.+.|.|+.++++||.|.+.-+||.-++++.
T Consensus 228 -LI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI 265 (603)
T KOG3737|consen 228 -LIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPI 265 (603)
T ss_pred -hhhhhccchhhccccEEEEEecceeeeccccccccccc
Confidence 47777889999999999999999999999999999999
No 75
>KOG2977|consensus
Probab=99.12 E-value=1.1e-09 Score=105.80 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=84.3
Q ss_pred cEEEEEecCCChhhH----HHHHHHHHcCCCC-----CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcc
Q psy11373 71 GVTILKPLTGTDPNL----YSNLETFFTMSYP-----KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVN 141 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l----~~~L~Sl~~q~yp-----~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~ 141 (539)
..|||||.|||+..+ .+|+.++.+ .|. .+||+||||+|+|.|.+++-++..++..-.+++....+|.|
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~-ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrg-- 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEK-RYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRG-- 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHH-HhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCC--
Confidence 589999999999875 566666643 342 49999999999999999999998777655677777788888
Q ss_pred hhhhhHHHHHHhcCCcEEEEEcCCCCC---ChHHHHHHHH
Q psy11373 142 PKINNMEPGYKAAKYELILISDSGIRM---KEDTLLDMVN 178 (539)
Q Consensus 142 ~K~~al~~g~~~a~~d~i~~lDaD~~~---~p~~L~~lv~ 178 (539)
|.++...|+..++|+++++.|||-.- +-+.|++.+.
T Consensus 145 -KGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~ 183 (323)
T KOG2977|consen 145 -KGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALN 183 (323)
T ss_pred -CCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHH
Confidence 89999999999999999999999864 3344555554
No 76
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=99.09 E-value=3.5e-08 Score=111.18 Aligned_cols=49 Identities=20% Similarity=0.376 Sum_probs=43.9
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee-cc-cccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS-GQ-PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~-~~-~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
++.++||+..|.+++.+|||.+|. |+ +......|.++.+++.||.||++
T Consensus 737 YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~ 787 (1044)
T PLN02915 737 YGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWAL 787 (1044)
T ss_pred ccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999998 44 55568999999999999999998
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.82 E-value=3.5e-08 Score=100.66 Aligned_cols=114 Identities=11% Similarity=0.173 Sum_probs=85.3
Q ss_pred EEEEEecCCChhhHHHHHHHHHcCC--CCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEec----CcccCcc----
Q psy11373 72 VTILKPLTGTDPNLYSNLETFFTMS--YPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIG----GQVVGVN---- 141 (539)
Q Consensus 72 VSIIIP~~ne~~~l~~~L~Sl~~q~--yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~----~~~~g~~---- 141 (539)
+.|+|.+||..+.+++||+|+++|. +.+.+|+|.+|++++++.+.++.+. .++ +++.. ..+.|..
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~---~~i--~~i~~~~~~~~~~~~~~~~~ 76 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG---DGV--THIQHPPISIKNVNPPHKFQ 76 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc---ccc--EEEEcccccccccCcccccc
Confidence 5799999999999999999999984 4469999999999988888887653 112 22221 1111100
Q ss_pred --hh-h----hhHHHHHHhcCCcEEEEEcCCCCCChHHH---HHHHHhh--CCCeeEEEee
Q psy11373 142 --PK-I----NNMEPGYKAAKYELILISDSGIRMKEDTL---LDMVNHL--KPGVGLVHQM 190 (539)
Q Consensus 142 --~K-~----~al~~g~~~a~~d~i~~lDaD~~~~p~~L---~~lv~~~--~~~vg~V~g~ 190 (539)
.+ + .+++.++...++++++++|+|+.+.|+++ +++++.+ ++.+..|++.
T Consensus 77 ~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~ 137 (334)
T cd02514 77 GYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW 137 (334)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence 01 2 27888888889999999999999999955 5556666 8889999983
No 78
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=98.66 E-value=5.2e-08 Score=106.60 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=43.0
Q ss_pred HHhhhHhHHHHHHHHHcCCceeee-cc-cccccCCCCCHHHHHHHHHHHHH
Q psy11373 355 GCYLAEDLFFARALSELGWKITIS-GQ-PAWQNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 355 ~~~~~ED~~l~~~l~~~G~ri~~~-~~-~~~~~~~~~s~~~~~~qr~RW~r 403 (539)
+..++||+..|.+++.+|||.+|. |. +.....+|.++.+-+.|+.||+.
T Consensus 419 YGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~ 469 (720)
T PF03552_consen 419 YGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWAT 469 (720)
T ss_pred EEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEee
Confidence 446789999999999999998886 43 56778899999999999999997
No 79
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.56 E-value=3.7e-07 Score=88.36 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=61.7
Q ss_pred EEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 72 VTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 72 VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
||||++ .|.++.+++|++++.++..|+.|.|-+++-.. ..+ -+.+.|.|+
T Consensus 1 isiI~c-~n~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~--------------------------~~s---~~~~yN~a~ 50 (217)
T PF13712_consen 1 ISIIIC-VNDEELYEECLRSIKRLIGPPGELIEIDNVRN--------------------------AKS---MAAAYNEAM 50 (217)
T ss_dssp EEEEEE-ES-HHHHHHHHHHHHHTT--TEEEEEEE-SSS---------------------------S----TTTHHHHHG
T ss_pred CEEEEE-ECCHHHHHHHHHHHHhhCCCCceEEEEeccCC--------------------------CcC---HHHHHHHHH
Confidence 455554 55556778899999999999888876654211 112 456779999
Q ss_pred HhcCCcEEEEEcCCCCC-ChHHHHHHHHhh--CCCeeEEE
Q psy11373 152 KAAKYELILISDSGIRM-KEDTLLDMVNHL--KPGVGLVH 188 (539)
Q Consensus 152 ~~a~~d~i~~lDaD~~~-~p~~L~~lv~~~--~~~vg~V~ 188 (539)
+.|+++|++++..|+.+ +++|++.+++.| ++++|+++
T Consensus 51 ~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iG 90 (217)
T PF13712_consen 51 EKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIG 90 (217)
T ss_dssp GG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred HhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEE
Confidence 99999999999999998 799999999999 88888765
No 80
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.93 E-value=9.6e-05 Score=70.88 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=50.6
Q ss_pred cEEEEEecCCChhhHHHHHHHH---HcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhH
Q psy11373 71 GVTILKPLTGTDPNLYSNLETF---FTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNM 147 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl---~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al 147 (539)
+|+||||.+|.++.|...|..+ ++..--++.|+|+....+ .... |+..+
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~~~-------------------------~~FN---R~~ll 54 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGN-------------------------FRFN---RAKLL 54 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCC-------------------------ccch---hhhhh
Confidence 5899999999999987776544 322222467766653211 0111 45566
Q ss_pred HHHHHhc----CCcEEEEEcCCCCCChHHHH
Q psy11373 148 EPGYKAA----KYELILISDSGIRMKEDTLL 174 (539)
Q Consensus 148 ~~g~~~a----~~d~i~~lDaD~~~~p~~L~ 174 (539)
|.|+..| +.|++++-|.|..+.++...
T Consensus 55 NvG~~~a~k~~~~dc~i~hDVDllP~~~~~~ 85 (219)
T cd00899 55 NVGFLEALKDGDWDCFIFHDVDLLPENDRNL 85 (219)
T ss_pred hHHHHHHhhcCCccEEEEecccccccCcccc
Confidence 7766655 47899999999999877744
No 81
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.66 E-value=0.00029 Score=58.83 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh-cCCc
Q psy11373 79 TGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA-AKYE 157 (539)
Q Consensus 79 ~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~-a~~d 157 (539)
+||++.|++.|+...++.. -+++++||+|+|+|.++++++ +.+.+..... +......+....+...+. .++|
T Consensus 1 rne~~~L~~wl~~~~~lG~--d~i~i~d~~s~D~t~~~l~~~----~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~d 73 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGV--DHIYIYDDGSTDGTREILRAL----PGVGIIRWVD-PYRDERRQRAWRNALIERAFDAD 73 (97)
T ss_pred CChHHHHHHHHHHHHHcCC--CEEEEEECCCCccHHHHHHhC----CCcEEEEeCC-CccchHHHHHHHHHHHHhCCCCC
Confidence 6999999999999877644 368999999999999998764 5554432222 211111223333333333 4889
Q ss_pred EEEEEcCCCCCC
Q psy11373 158 LILISDSGIRMK 169 (539)
Q Consensus 158 ~i~~lDaD~~~~ 169 (539)
+++++|+|-.+.
T Consensus 74 Wvl~~D~DEfl~ 85 (97)
T PF13704_consen 74 WVLFLDADEFLV 85 (97)
T ss_pred EEEEEeeeEEEe
Confidence 999999998763
No 82
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.34 E-value=0.004 Score=61.58 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCC--CCcHHHHHHHHHhC--------CCceEEEE
Q psy11373 65 QEMPYPGVTILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDV--DPAVPLVEKLCKKY--------PNVDTSVF 132 (539)
Q Consensus 65 ~~~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~--D~t~~il~~l~~~~--------p~~~~~~~ 132 (539)
+....+.|-|+.|.+|.+..+.+-++.+.+++||+ +.+=++..+++ |.|.+.+++..++. +--.++++
T Consensus 20 ~~~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl 99 (269)
T PF03452_consen 20 AARNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITIL 99 (269)
T ss_pred ccccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEE
Confidence 34567889999999999999999999999999996 77877888887 88988887543221 11234444
Q ss_pred ecCcc--cCcch------h---------hhhHHHHHHhc---CCcEEEEEcCCCCC-ChHHHHHHHHhhCCC
Q psy11373 133 IGGQV--VGVNP------K---------INNMEPGYKAA---KYELILISDSGIRM-KEDTLLDMVNHLKPG 183 (539)
Q Consensus 133 ~~~~~--~g~~~------K---------~~al~~g~~~a---~~d~i~~lDaD~~~-~p~~L~~lv~~~~~~ 183 (539)
..+-. .|.+. + +.+.|..+..+ ..+|++.+|+|..- +|+.|+.|+++ +.+
T Consensus 100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~-~kd 170 (269)
T PF03452_consen 100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH-DKD 170 (269)
T ss_pred cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhC-CCC
Confidence 32211 01100 1 11223333333 68999999999986 88999999887 444
No 83
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.30 E-value=0.0011 Score=69.59 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCC--CCeEEEEEeCCCCCCcHHHHHHHHHhC-----CCceEEEEecCcccCc
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSY--PKYEICFCLEDDVDPAVPLVEKLCKKY-----PNVDTSVFIGGQVVGV 140 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~y--p~~eIIvvdd~s~D~t~~il~~l~~~~-----p~~~~~~~~~~~~~g~ 140 (539)
..+.+-|+|-+||....+.+||++|++..- +.+.|+|-.|++++.+.++++++..+. ++.. .+.+.+.....
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~-~i~~~~~~~~~ 169 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFS-PITIPPKEKKF 169 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S------TT-GGG
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCCcC-CceeCcccccc
Confidence 355688999999999999999999987532 247899999999888888887764321 1100 00011111000
Q ss_pred --chh-----hhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-----CCCeeEEEe
Q psy11373 141 --NPK-----INNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-----KPGVGLVHQ 189 (539)
Q Consensus 141 --~~K-----~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-----~~~vg~V~g 189 (539)
..| ..+|+..+..-+++.++++..|..+.||+++-+.+.. ++.+-.|++
T Consensus 170 ~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa 230 (434)
T PF03071_consen 170 KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA 230 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc
Confidence 000 1234444444478999999999999999988876654 778877776
No 84
>KOG3588|consensus
Probab=97.24 E-value=0.0043 Score=62.67 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=75.8
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCC-CCCCcH--HHHHHHHHhCCCceEEEEecCcccCcchh
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLED-DVDPAV--PLVEKLCKKYPNVDTSVFIGGQVVGVNPK 143 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~-s~D~t~--~il~~l~~~~p~~~~~~~~~~~~~g~~~K 143 (539)
-+.|.+.+++|..++......-.++++...-.+.+++|+-=+ |.|+-. +.+..+.++++.+ ..+....... .
T Consensus 226 i~~pgih~i~pl~gr~~~f~rf~q~~c~~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~~--q~l~lngeFS---R 300 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRAAIFARFAQSICARGDDRLALSVVYFGYSEDEMAKRETITSLRASFIPV--QFLGLNGEFS---R 300 (494)
T ss_pred ccCCCceEEEeccchHHHhhhhhHHHhccCCCceEEEEEEecCCChHHHhhhHHHHHhhcCCce--EEecccchhh---h
Confidence 456889999999999999988899998765556666555443 444322 3455677788775 2222211122 4
Q ss_pred hhhHHHHHHhcCC-cEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 144 INNMEPGYKAAKY-ELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 144 ~~al~~g~~~a~~-d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
+.+|..|.+.-+. -.+.|+|-|.....++|+++-..-
T Consensus 301 a~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt 338 (494)
T KOG3588|consen 301 AKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNT 338 (494)
T ss_pred hHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhcc
Confidence 6678888888754 466788999999999999986543
No 85
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.23 E-value=0.012 Score=57.02 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=58.7
Q ss_pred CcEEEEEecCCCh--hhH-HHHHH--HHHc--CCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcc-
Q psy11373 70 PGVTILKPLTGTD--PNL-YSNLE--TFFT--MSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVN- 141 (539)
Q Consensus 70 p~VSIIIP~~ne~--~~l-~~~L~--Sl~~--q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~- 141 (539)
|+.+++||+--.+ +.+ .+.+. ++.+ +.-...++|+++..+.-. ..++.+....|++.+. -..+++.-.+
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d--~~i~~~i~~~~~~~yl-~~~s~~~F~s~ 78 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD--RLIRSYIDPMPRVLYL-DFGSPEPFASE 78 (346)
T ss_pred CCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH--HHHHHHhccccceEEE-ecCCCccccch
Confidence 4678999996433 333 22333 2111 212248899888876322 4455666666764221 1222222212
Q ss_pred hhhhhHHHHHHhc----CCcEEEEEcCCCCCChHHHHHHHH
Q psy11373 142 PKINNMEPGYKAA----KYELILISDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 142 ~K~~al~~g~~~a----~~d~i~~lDaD~~~~p~~L~~lv~ 178 (539)
++.. |.|+..+ ..++++++|.||..+.|-.++++.
T Consensus 79 ~~c~--n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 79 TICA--NNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred hhhh--hccchhhhccccccEEEEEeccccccHHHHHHHHH
Confidence 2333 4455555 599999999999999777666663
No 86
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.95 E-value=0.062 Score=56.46 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=28.9
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKE 276 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~ 276 (539)
.++|+++++||++|+++|||++..+.+.||+++.
T Consensus 199 ~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~ 232 (373)
T TIGR03472 199 FCFGATMALRRATLEAIGGLAALAHHLADDYWLG 232 (373)
T ss_pred cccChhhheeHHHHHHcCChHHhcccchHHHHHH
Confidence 3679999999999999999998777777887554
No 87
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=96.93 E-value=0.018 Score=62.80 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=76.8
Q ss_pred CCCcEEEEEecCCC-hhhHHHHHHHHHc---CCCCCeEEEEEeCCC-CCC-----cHHHHHHHHHhCCCceEEEEecC-c
Q psy11373 68 PYPGVTILKPLTGT-DPNLYSNLETFFT---MSYPKYEICFCLEDD-VDP-----AVPLVEKLCKKYPNVDTSVFIGG-Q 136 (539)
Q Consensus 68 ~~p~VSIIIP~~ne-~~~l~~~L~Sl~~---q~yp~~eIIvvdd~s-~D~-----t~~il~~l~~~~p~~~~~~~~~~-~ 136 (539)
+...|.||+|+.+. .+.+..-|+...+ +.-.+...++|...+ .|. ..+.++++.+++|..++.++... .
T Consensus 245 ~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~ 324 (499)
T PF05679_consen 245 ESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTG 324 (499)
T ss_pred CCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCC
Confidence 34689999999998 6666555544332 222244444444433 332 23577888889998888877544 3
Q ss_pred ccCcchhhhhHHHHHHhc-CCcEEEEEcCCCCCChHHHHHHHHhhCCC
Q psy11373 137 VVGVNPKINNMEPGYKAA-KYELILISDSGIRMKEDTLLDMVNHLKPG 183 (539)
Q Consensus 137 ~~g~~~K~~al~~g~~~a-~~d~i~~lDaD~~~~p~~L~~lv~~~~~~ 183 (539)
... ++.+|..|++.. ..++++++|.|..+++++|.++-..-.++
T Consensus 325 ~fs---r~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g 369 (499)
T PF05679_consen 325 EFS---RGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG 369 (499)
T ss_pred Ccc---HHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC
Confidence 333 677888888754 67799999999999999999997654333
No 88
>KOG3916|consensus
Probab=96.87 E-value=0.0032 Score=63.15 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=36.4
Q ss_pred cccchhhhchhhHhhhcchH-HHHHhhhHhHHHHHHHHHcCCceee
Q psy11373 333 HTGMSTLTRKSIFDELGGIK-TFGCYLAEDLFFARALSELGWKITI 377 (539)
Q Consensus 333 ~~G~~~~~rr~~l~~~gg~~-~~~~~~~ED~~l~~~l~~~G~ri~~ 377 (539)
..|+-.++.++.|+++.||. .+-..-|||=++..|+..+|++|.=
T Consensus 260 ~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsR 305 (372)
T KOG3916|consen 260 YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISR 305 (372)
T ss_pred hhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeec
Confidence 34777788888888888887 3455668999999999999998654
No 89
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=96.85 E-value=0.018 Score=62.03 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=42.5
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc-------ccCCcceec----------ccccccccchh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH-------LKPGVGLVH----------QMPFTWDRKGF 305 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~-------~~p~~~~~~----------~~~~~w~~~~~ 305 (539)
+.+|+++++||++++++||+++ |...||++++|+.+ +.|+...++ +++.||++|+.
T Consensus 229 ~~sG~~~~~rr~al~~vGg~~~-------~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~~ 301 (444)
T PRK14583 229 TVSGVVAAFRRRALADVGYWSP-------DMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGGA 301 (444)
T ss_pred EecCceeEEEHHHHHHcCCCCC-------CcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcHH
Confidence 4789999999999999999965 45567777777766 556655544 23377888876
Q ss_pred hh
Q psy11373 306 AA 307 (539)
Q Consensus 306 ~~ 307 (539)
+.
T Consensus 302 ~~ 303 (444)
T PRK14583 302 EV 303 (444)
T ss_pred HH
Confidence 53
No 90
>PRK11204 N-glycosyltransferase; Provisional
Probab=96.64 E-value=0.22 Score=53.12 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=41.0
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc-------ccCCcceecccc----------cccccchh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH-------LKPGVGLVHQMP----------FTWDRKGF 305 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~-------~~p~~~~~~~~~----------~~w~~~~~ 305 (539)
..+|++.++||++++++|||++. ...||.+++++.+ +.|+...+|+.| .||.+|.+
T Consensus 208 ~~~G~~~~~rr~~l~~vgg~~~~-------~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G~~ 280 (420)
T PRK11204 208 TVSGVITAFRKSALHEVGYWSTD-------MITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQGGA 280 (420)
T ss_pred EecceeeeeeHHHHHHhCCCCCC-------cccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcCHH
Confidence 46899999999999999999763 3445666655554 677776666543 66777765
Q ss_pred h
Q psy11373 306 A 306 (539)
Q Consensus 306 ~ 306 (539)
+
T Consensus 281 ~ 281 (420)
T PRK11204 281 E 281 (420)
T ss_pred H
Confidence 5
No 91
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.28 E-value=0.014 Score=57.07 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCCCeEEEEEeC-CCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh---cCCcEEEE
Q psy11373 86 YSNLETFFTMSYPKYEICFCLE-DDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA---AKYELILI 161 (539)
Q Consensus 86 ~~~L~Sl~~q~yp~~eIIvvdd-~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~---a~~d~i~~ 161 (539)
.-||.|+.+|+-++++.+|+.| ...+.-.+.++++.+.+|++++. ...+.+ ...++...++. ..+++++.
T Consensus 45 ~~~LpSl~~QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 118 (234)
T PF11316_consen 45 TYCLPSLRAQTDQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIV-FRPPGP-----HRDAMRRAINAARRDGADPVLQ 118 (234)
T ss_pred HHHhhHHHhccCCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEE-ecCCch-----HHHHHHHHHhhhccCCCCEEEE
Confidence 4589999999999998887555 45555677899999999977553 122211 23444444422 35555544
Q ss_pred --EcCCCCCChHHHHHHHHhh
Q psy11373 162 --SDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 162 --lDaD~~~~p~~L~~lv~~~ 180 (539)
+|+|+.++.|+++++-+..
T Consensus 119 ~RLDdDDAl~~dFV~rlr~~a 139 (234)
T PF11316_consen 119 FRLDDDDALHRDFVARLRRAA 139 (234)
T ss_pred EEECCcchhhHHHHHHHHHHH
Confidence 5999999999999998875
No 92
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=96.24 E-value=0.057 Score=54.90 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=64.3
Q ss_pred cEEEEEecCCChhhH-HHHHHHHHcCCCC-CeEEEEEeCCCC---CCc---HHHHHHHHHhCCCceEEEEecCc------
Q psy11373 71 GVTILKPLTGTDPNL-YSNLETFFTMSYP-KYEICFCLEDDV---DPA---VPLVEKLCKKYPNVDTSVFIGGQ------ 136 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l-~~~L~Sl~~q~yp-~~eIIvvdd~s~---D~t---~~il~~l~~~~p~~~~~~~~~~~------ 136 (539)
..+||||+.||+-.+ +-.|.+ -| +.-||+|-|++. |.- .+.+++++..- +.++.++++..
T Consensus 51 ~maIVVP~KnE~l~lleGVL~g-----IPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t-~r~~~~vHQkDp~lA~A 124 (381)
T PF09488_consen 51 KMAIVVPCKNEKLKLLEGVLSG-----IPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLT-RRQIIIVHQKDPGLAEA 124 (381)
T ss_dssp TEEEEEEESS--HHHHHHHHHC-----S-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHC-T--EEEEETT-HHHHHH
T ss_pred CcEEEEECCCCchhhhhhhhhc-----CCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhh-cCceEEEecCCHHHHHH
Confidence 489999999999776 333333 35 488999998887 432 35666665432 22333344321
Q ss_pred -------------ccCcchhhhhHHHHHHhc---CCcEEEEEcCCCCCChH---HHHHHHHhh---CCCeeEEEe
Q psy11373 137 -------------VVGVNPKINNMEPGYKAA---KYELILISDSGIRMKED---TLLDMVNHL---KPGVGLVHQ 189 (539)
Q Consensus 137 -------------~~g~~~K~~al~~g~~~a---~~d~i~~lDaD~~~~p~---~L~~lv~~~---~~~vg~V~g 189 (539)
..=.|||+..+..|+..| ..+||-|+|||..++-. |++...+.| +....+|--
T Consensus 125 f~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPGaV~EYvk~yAAGf~ms~spytMVRi 199 (381)
T PF09488_consen 125 FKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPGAVNEYVKDYAAGFAMSESPYTMVRI 199 (381)
T ss_dssp HHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHHHHHHHHHHHHHHHC-SSSCEEEEE
T ss_pred HHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcchHHHHHHHHHhhhcccCCCceEEEE
Confidence 123577999998887665 78999999999998654 455555555 555677754
No 93
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.03 E-value=0.023 Score=56.81 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc------ccCcchhh
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ------VVGVNPKI 144 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~------~~g~~~K~ 144 (539)
.++-.|=+.||+..|+++|+|++.. . -|.|++=++|+|+|.|++.++++++|.. +.+..+-+ ..-.|...
T Consensus 88 ~~~~~iRvKnE~~tl~~si~S~Lpa-i--~~gVI~yNdc~D~t~Eiil~fckkyP~f-ip~~Ypy~v~~~n~~~~~n~l~ 163 (347)
T PF06306_consen 88 NPWAFIRVKNEAMTLAESIESILPA-I--DEGVIGYNDCTDGTEEIILEFCKKYPSF-IPIKYPYEVIIKNPKSEENSLY 163 (347)
T ss_pred CcceEEEEcchhhhHHHHHHHHHHH-H--hccEEEeecCCCCHHHHHHHHHHhCccc-ccccCcchhhccCCchhhhhhh
Confidence 4788999999999999999999752 1 3788899999999999999999999973 22221111 11122233
Q ss_pred hhHHHHHHh-cCCcEEEEEcCCCCCChHHH
Q psy11373 145 NNMEPGYKA-AKYELILISDSGIRMKEDTL 173 (539)
Q Consensus 145 ~al~~g~~~-a~~d~i~~lDaD~~~~p~~L 173 (539)
+--|..+.. .+++|++=+|+|.+..++-|
T Consensus 164 ~YYNy~ls~ipk~~w~iKID~DhIy~~~KL 193 (347)
T PF06306_consen 164 NYYNYVLSFIPKNEWAIKIDADHIYDTKKL 193 (347)
T ss_pred hhhhhhhcccccceEEEEeccceeecHHHH
Confidence 333444444 37899999999999988775
No 94
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.01 E-value=0.085 Score=53.39 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=62.0
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCc------HHHHHHHHHhCCCceEEEEec---------
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPA------VPLVEKLCKKYPNVDTSVFIG--------- 134 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t------~~il~~l~~~~p~~~~~~~~~--------- 134 (539)
...|||||.||+-.+. +-+++ .-| +.-||+|-|++.++. .+.++.++.- .+.++.++++
T Consensus 51 ~maIVVP~KdE~l~ll---eGVL~-gIPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~-t~r~~i~vHQkDp~la~Af 125 (381)
T TIGR02460 51 KTAIVVPVKNEKLHLL---EGVLS-GIPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNL-THRKIIIIHQKDPALAEAF 125 (381)
T ss_pred CcEEEEEcCCCchhHH---hhHhh-cCCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHh-hcCceEEEEcCCHHHHHHH
Confidence 4799999999997753 33332 235 477888888876431 2445555432 2222323332
Q ss_pred ----------CcccCcchhhhhHHHHHHhc---CCcEEEEEcCCCCCChHH
Q psy11373 135 ----------GQVVGVNPKINNMEPGYKAA---KYELILISDSGIRMKEDT 172 (539)
Q Consensus 135 ----------~~~~g~~~K~~al~~g~~~a---~~d~i~~lDaD~~~~p~~ 172 (539)
....=.|+|+..+..|+..| ..+||-|+|||..++-..
T Consensus 126 ~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGaV 176 (381)
T TIGR02460 126 KEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGAV 176 (381)
T ss_pred HHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCchH
Confidence 12233577999988887665 789999999999987543
No 95
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=95.99 E-value=0.085 Score=53.68 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=65.2
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCC------cHHHHHHHHHhCCCceEEEEec---------
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDP------AVPLVEKLCKKYPNVDTSVFIG--------- 134 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~------t~~il~~l~~~~p~~~~~~~~~--------- 134 (539)
..+|||||.||+-.+ |+-+++ .-| +.-||+|-|++.++ -.+.+++++. +.+.++.++++
T Consensus 52 ~mAIVVP~KdE~l~l---leGVL~-gIPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~-~t~r~~i~vHQkDp~la~Af 126 (393)
T PRK14503 52 RMAIVVPVKNERLKL---LEGVLK-GIPHECPIIVVSNSKREPPDRFKLEVDLVRHFYR-LTQRPIIIVHQKDPGLAEAL 126 (393)
T ss_pred CcEEEEEcCCCchhH---HhhHhh-cCCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHh-hhcCceEEEEcCCHHHHHHH
Confidence 479999999999775 333332 235 47788888876633 1244555543 22223333332
Q ss_pred ----------CcccCcchhhhhHHHHHHhc---CCcEEEEEcCCCCCChH---HHHHHHHhh
Q psy11373 135 ----------GQVVGVNPKINNMEPGYKAA---KYELILISDSGIRMKED---TLLDMVNHL 180 (539)
Q Consensus 135 ----------~~~~g~~~K~~al~~g~~~a---~~d~i~~lDaD~~~~p~---~L~~lv~~~ 180 (539)
....=.|||+..+..|+..| ..+||-|+|||..+|-. |++...+.|
T Consensus 127 ~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGaV~EYvk~yAAGf 188 (393)
T PRK14503 127 KEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGAVNEYVKIYAAGF 188 (393)
T ss_pred HHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCchHHHHHHHHHhhh
Confidence 12223577999988887665 78999999999998754 344444444
No 96
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.94 E-value=0.0032 Score=50.54 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=35.4
Q ss_pred cccccchhhhchhhHhhhcchHH-HHHhhhHhHHHHHHHHHcCCceeeeccc
Q psy11373 331 PCHTGMSTLTRKSIFDELGGIKT-FGCYLAEDLFFARALSELGWKITISGQP 381 (539)
Q Consensus 331 ~~~~G~~~~~rr~~l~~~gg~~~-~~~~~~ED~~l~~~l~~~G~ri~~~~~~ 381 (539)
+...|+.++++|+.++++||+++ +...-+||.+++.|+.++|.++.-.+..
T Consensus 17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~ 68 (78)
T PF02709_consen 17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGS 68 (78)
T ss_dssp TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTT
T ss_pred CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCc
Confidence 44569999999999999999994 3444579999999999999987765543
No 97
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.52 E-value=0.35 Score=54.02 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=65.8
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCc------HHHHHHHHHhCCCceEEEEec---------
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPA------VPLVEKLCKKYPNVDTSVFIG--------- 134 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t------~~il~~l~~~~p~~~~~~~~~--------- 134 (539)
...|||||.||+-.+. +-+++ .-| +.-||+|-+++.++. .+.+++++.- .+.++-++++
T Consensus 56 ~~aivvp~k~e~~~~~---~gvl~-~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~-~~~~~~~vhq~dp~~a~a~ 130 (694)
T PRK14502 56 KMAIVLPIKDEDLKVF---EGVLS-GIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRI-THRQAIVVHQKNPELANAI 130 (694)
T ss_pred CcEEEEEcCCCchhHH---hhHhh-cCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHh-hcCceEEEEcCCHHHHHHH
Confidence 4799999999997753 33332 235 477888888776331 2445555432 2222323332
Q ss_pred ----------CcccCcchhhhhHHHHHHhc---CCcEEEEEcCCCCCChHH---HHHHHHhh
Q psy11373 135 ----------GQVVGVNPKINNMEPGYKAA---KYELILISDSGIRMKEDT---LLDMVNHL 180 (539)
Q Consensus 135 ----------~~~~g~~~K~~al~~g~~~a---~~d~i~~lDaD~~~~p~~---L~~lv~~~ 180 (539)
....=.|||+..+..|+..| ..+||-|+|||..+|-.. ++...+.|
T Consensus 131 ~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~v~ey~~~yaag~ 192 (694)
T PRK14502 131 ADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAVWEYAKHFATGF 192 (694)
T ss_pred HHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCchHHHHHHHHHhhh
Confidence 12233577999998888765 789999999999987544 44444444
No 98
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=94.42 E-value=0.019 Score=55.64 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=33.2
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhh--hhhhhhhcccCCcceeccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKED--TLLDMVNHLKPGVGLVHQM 296 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~d--i~~~~~~~~~p~~~~~~~~ 296 (539)
.++|+++++||++++++|||++. .+.||+++.- ....|+..+.|.+.++|..
T Consensus 161 ~~~g~~~~~rr~~~~~vgg~~~~--~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~ 214 (232)
T cd06437 161 NFNGTAGVWRKECIEDAGGWNHD--TLTEDLDLSYRAQLKGWKFVYLDDVVVPAEL 214 (232)
T ss_pred EeccchhhhhHHHHHHhCCCCCC--cchhhHHHHHHHHHCCCeEEEeccceeeeeC
Confidence 35788889999999999999873 2345543321 1122333367777776664
No 99
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=94.29 E-value=2 Score=46.22 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=34.8
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhh-hh--hhhhhcccCCcceeccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKED-TL--LDMVNHLKPGVGLVHQM 296 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~d-i~--~~~~~~~~p~~~~~~~~ 296 (539)
.++|++.++||++++++|||++. .++||+++.- +. ..++..+.|+..++|+.
T Consensus 214 ~~sGa~~~~Rr~~l~~vggf~~~--~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~ 268 (439)
T TIGR03111 214 TLSGAFSAFRRETILKTQLYNSE--TVGEDTDMTFQIRELLDGKVYLCENAIFYVDP 268 (439)
T ss_pred EEccHHHhhhHHHHHHhCCCCCC--CcCccHHHHHHHHHhcCCeEEECCCCEEEEEC
Confidence 47899999999999999999753 3466665541 11 12333366777766654
No 100
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=93.20 E-value=0.049 Score=52.37 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=33.0
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhh--hhhhhhhcccCCcceecccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKED--TLLDMVNHLKPGVGLVHQMP 297 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~d--i~~~~~~~~~p~~~~~~~~~ 297 (539)
.++|+++++||++++++|||++ +.+.||+.+.. ....|+..+.|+..+.|..+
T Consensus 158 ~~~G~~~~~rr~~~~~~g~fd~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~ 212 (228)
T PF13641_consen 158 FLSGSGMLFRRSALEEVGGFDP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEP 212 (228)
T ss_dssp -B--TEEEEEHHHHHHH-S--S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--S
T ss_pred eccCcEEEEEHHHHHHhCCCCC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCC
Confidence 4679999999999999999998 55567776542 22445555888888888854
No 101
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=92.98 E-value=0.07 Score=51.65 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=32.4
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhh--hhhhhhhhcccCCcceecc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKE--DTLLDMVNHLKPGVGLVHQ 295 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~--di~~~~~~~~~p~~~~~~~ 295 (539)
++|+++++||++++++|||++. .+.||+++. -....|+..+.|.....++
T Consensus 158 ~~g~~~~~rr~~~~~iGgf~~~--~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~ 209 (236)
T cd06435 158 QHGTMCLIRRSALDDVGGWDEW--CITEDSELGLRMHEAGYIGVYVAQSYGHGL 209 (236)
T ss_pred EecceEEEEHHHHHHhCCCCCc--cccchHHHHHHHHHCCcEEEEcchhhccCc
Confidence 5788999999999999999863 234555443 1112344447776555444
No 102
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=92.48 E-value=1.1 Score=49.01 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeC
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLE 107 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd 107 (539)
+.|...|++-+++.++...+.++.+.+ .||+.+++++..
T Consensus 93 dY~~~eIiVv~d~ndd~T~~~v~~l~~-~~p~v~~vv~~~ 131 (504)
T PRK14716 93 DYENYRIFVGTYPNDPATLREVDRLAA-RYPRVHLVIVPH 131 (504)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHH-HCCCeEEEEeCC
Confidence 458899999998877777777777754 688877666543
No 103
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.38 E-value=0.063 Score=50.14 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=32.3
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKED 277 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~d 277 (539)
.+.|+++++||++++++|||+.+...++|||.+..
T Consensus 100 ~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~ 134 (175)
T PF13506_consen 100 FAWGGSMAFRREALEEIGGFEALADYLADDYALGR 134 (175)
T ss_pred ceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHH
Confidence 47899999999999999999999999999998763
No 104
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=91.69 E-value=0.12 Score=48.32 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=38.7
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhhh--hhhhhhcccCCcceeccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDT--LLDMVNHLKPGVGLVHQM 296 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di--~~~~~~~~~p~~~~~~~~ 296 (539)
.++|++.++|+++++++||++ ....+.||.+..-. ...|+..+.|+..+.++.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~~-~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~ 125 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGFD-DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEA 125 (193)
T ss_pred cccCcceeeeHHHHHHhCccc-ccccccchHHHHHHHHHCCCEEEEecccceeeeC
Confidence 478999999999999999999 66677777766522 233455577777555553
No 105
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.58 E-value=0.14 Score=51.77 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=37.8
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc-------ccCCcceeccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH-------LKPGVGLVHQM 296 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~-------~~p~~~~~~~~ 296 (539)
..+|+++++||+.|+++|||++.... +..||+|+++|.. ..|.+.+.|..
T Consensus 170 ~~~g~~~~irr~~~~~vGgfDe~~~~----~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~ 226 (299)
T cd02510 170 TMAGGLFAIDREWFLELGGYDEGMDI----WGGENLELSFKVWQCGGSIEIVPCSRVGHIF 226 (299)
T ss_pred cccceeeEEEHHHHHHhCCCCCcccc----cCchhHHHHHHHHHcCCeEEEeeccEEEEec
Confidence 36799999999999999999875432 2246666665554 78999999864
No 106
>KOG1413|consensus
Probab=91.28 E-value=2.3 Score=43.39 Aligned_cols=122 Identities=10% Similarity=0.135 Sum_probs=84.8
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCC---CeEEEEEeCCCCCCcHHHHHHHHHhCCCc------eEEEEecCcc
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYP---KYEICFCLEDDVDPAVPLVEKLCKKYPNV------DTSVFIGGQV 137 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp---~~eIIvvdd~s~D~t~~il~~l~~~~p~~------~~~~~~~~~~ 137 (539)
...|.+.|++=++|..+.++.|++.+.++. | ++-|||.-|+++.++.+.++.+......+ +..+.+.+..
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~ 142 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRH 142 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcc
Confidence 445678899999999999999999999876 6 37788888888888888887765433221 1222222222
Q ss_pred cCcc--hh-----hhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh-----CCCeeEEEe
Q psy11373 138 VGVN--PK-----INNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-----KPGVGLVHQ 189 (539)
Q Consensus 138 ~g~~--~K-----~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~-----~~~vg~V~g 189 (539)
...| .| ..|+++.+...+.+.++++-+|.-+.||+.+..-... ++.+-.|+.
T Consensus 143 ~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsa 206 (411)
T KOG1413|consen 143 KKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSA 206 (411)
T ss_pred cccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeee
Confidence 1111 01 2366777777789999999999999999988776543 555665654
No 107
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=91.23 E-value=0.58 Score=41.40 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHH---H-cCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhh
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETF---F-TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKIN 145 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl---~-~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~ 145 (539)
-+|+||||.+|.++.|...|..+ + +|.. ++.|+|+....+.. - | |+.
T Consensus 47 ~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~-~y~I~vieQ~~~~~-F----------------------N-----Rg~ 97 (136)
T PF13733_consen 47 HKVAIIIPYRDREEHLRIFLPHLHPFLQRQQL-DYRIFVIEQVDNGP-F----------------------N-----RGK 97 (136)
T ss_dssp -EEEEEEEESS-HHHHHHHHHHHHHHHHHTT--EEEEEEEEE-SSS-------------------------------HHH
T ss_pred cceEEEEEeCCHHHHHHHHHHHHHHHHhhCcc-eEEEEEEeeccCCC-C----------------------c-----hhh
Confidence 37999999999999987776544 3 3433 58888886543221 0 1 344
Q ss_pred hHHHHHHhc----CCcEEEEEcCCCCCChH
Q psy11373 146 NMEPGYKAA----KYELILISDSGIRMKED 171 (539)
Q Consensus 146 al~~g~~~a----~~d~i~~lDaD~~~~p~ 171 (539)
-+|.|+..| ..|+++|-|.|..+..+
T Consensus 98 L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 98 LMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 455666555 68999999999987554
No 108
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.86 E-value=0.089 Score=56.13 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=30.6
Q ss_pred ccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc
Q psy11373 241 FMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH 285 (539)
Q Consensus 241 ~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~ 285 (539)
...++|.+.++||++++++||+++ +...||.+++++.+
T Consensus 211 ~~~~~G~~~~~rr~aL~~~g~~~~-------~~i~ED~~lt~~l~ 248 (439)
T COG1215 211 ISFLSGSSSAFRRSALEEVGGWLE-------DTITEDADLTLRLH 248 (439)
T ss_pred eEEEcceeeeEEHHHHHHhCCCCC-------CceeccHHHHHHHH
Confidence 346899999999999999998754 56667777777776
No 109
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=90.78 E-value=2.1 Score=42.02 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=65.6
Q ss_pred EEEecCCChhhHHHHHH-HHHc---CCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCC--ceEEEEecCcccC-cc----
Q psy11373 74 ILKPLTGTDPNLYSNLE-TFFT---MSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPN--VDTSVFIGGQVVG-VN---- 141 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~-Sl~~---q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~--~~~~~~~~~~~~g-~~---- 141 (539)
|-.-.||.++.|..... ++++ .--| +.-|-+.+++|.|.|.+.++++...... +...+...+.... ..
T Consensus 4 IA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~ 83 (241)
T PF11735_consen 4 IAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPP 83 (241)
T ss_pred EEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccc
Confidence 33446777777755444 4443 2223 5778899999999999999988744332 3333333221111 00
Q ss_pred -hh-----hhhHHHHHH---------hcCCcEEEEEcCCCCCChHHHHHHHHhhC-CCeeEEEe
Q psy11373 142 -PK-----INNMEPGYK---------AAKYELILISDSGIRMKEDTLLDMVNHLK-PGVGLVHQ 189 (539)
Q Consensus 142 -~K-----~~al~~g~~---------~a~~d~i~~lDaD~~~~p~~L~~lv~~~~-~~vg~V~g 189 (539)
.+ +.-.|.+++ ..+.|-|+++| |+...+.-+-+++..-+ .+..++++
T Consensus 84 ~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCa 146 (241)
T PF11735_consen 84 RLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACA 146 (241)
T ss_pred hhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhh
Confidence 00 122223322 12567899999 88887666666666543 45666666
No 110
>KOG4179|consensus
Probab=90.18 E-value=0.51 Score=48.77 Aligned_cols=109 Identities=19% Similarity=0.167 Sum_probs=71.0
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHcCCCCC--eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEE----ecCc--ccCcc
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPK--YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVF----IGGQ--VVGVN 141 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~--~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~----~~~~--~~g~~ 141 (539)
|.|-+.+-++|-...+.--+..+.++|||+ .-|.+..|.+.|.+.++.+++.++-.+...++. ..++ ..+.+
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~ 82 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHG 82 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccC
Confidence 455556666777777766677677899996 568889999999999999998766443322222 1111 11112
Q ss_pred hh--------------hhhHHHHHHhcCCcEEEEEcCCCCC-ChHHHHHHHHh
Q psy11373 142 PK--------------INNMEPGYKAAKYELILISDSGIRM-KEDTLLDMVNH 179 (539)
Q Consensus 142 ~K--------------~~al~~g~~~a~~d~i~~lDaD~~~-~p~~L~~lv~~ 179 (539)
+| -.+++.+ +.--.||+++.|.|+.+ .++.|.-+.+.
T Consensus 83 pk~W~~sr~q~lm~lKeea~~~~-r~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 83 PKHWPDSRFQHLMSLKEEALNWA-RSGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred CccCchHHHHHHHHHHHHHHHHH-HhhhcceeEEeehhheeeCCchHhHHHhc
Confidence 22 2222221 22367999999999998 78888777654
No 111
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=89.83 E-value=0.23 Score=49.33 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=29.6
Q ss_pred ccccceeeEehHHHHHhC------CCccc-cccchhhhhhhhhh--hhhhhcccCCc
Q psy11373 243 PFTGMSTLTRKSIFDELG------GIKTF-GCYLAEERMKEDTL--LDMVNHLKPGV 290 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vG------gf~~~-~~~~~ed~~~~di~--~~~~~~~~p~~ 290 (539)
++.|+++++||++++++| |+.+. ...++||+.+.-.. -.|+..+.|..
T Consensus 170 ~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~ 226 (254)
T cd04191 170 NYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDL 226 (254)
T ss_pred CccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCC
Confidence 578999999999999964 44444 34566666554211 22443456654
No 112
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=89.26 E-value=0.91 Score=45.01 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=27.3
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEeec
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMP 191 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g~~ 191 (539)
.+.|+++++|+|+.+..+-|.+++..+++.-.+.-|.+
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~ 122 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRP 122 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-E
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeee
Confidence 47799999999999999999999999966555555533
No 113
>KOG2547|consensus
Probab=89.16 E-value=1 Score=46.24 Aligned_cols=165 Identities=26% Similarity=0.402 Sum_probs=92.0
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHH-----HHhCCCceEEEEecCcccCcc
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKL-----CKKYPNVDTSVFIGGQVVGVN 141 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l-----~~~~p~~~~~~~~~~~~~g~~ 141 (539)
...++..++.++..+|+.-.+.++++++ .||+.|--++..|.+-+-.+.+... .++|+ ..+ +.+...-.
T Consensus 110 s~Y~~~ElLfcv~s~eDpAi~vv~~Ll~-kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~yd---lvl-isDsgI~m- 183 (431)
T KOG2547|consen 110 SQYHKYELLFCVESSEDPAIEVVERLLK-KYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYD---LVL-ISDSGIFM- 183 (431)
T ss_pred hccCceEEEEEEccCCCcHHHHHHHHHh-hCCCcceEEEEcccccccChhhhccCHHHHHhcCC---EEE-EecCCeee-
Confidence 4567899999999999888899999987 7998887777778777666655543 23444 222 22322222
Q ss_pred hhhhhHHHHHHh-cCCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEeeceecCCCChHHHHHHHHhcchhHHHHHhhh
Q psy11373 142 PKINNMEPGYKA-AKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAAN 220 (539)
Q Consensus 142 ~K~~al~~g~~~-a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (539)
|-+.+-..... .+.|=..+...- .++...-|. .-.+.+ .++.+.|++.|++.|
T Consensus 184 -~pdtildm~t~M~shekmalvtq~------------py~~dr~Gf---------~atle~----~~fgTsh~r~yl~~n 237 (431)
T KOG2547|consen 184 -KPDTILDMATTMMSHEKMALVTQT------------PYCKDRQGF---------DATLEQ----VYFGTSHPRIYLSGN 237 (431)
T ss_pred -cCchHHHHHHhhhcccceeeecCC------------ceeeccccc---------hhhhhh----eeeccCCceEEEccc
Confidence 22222211111 111111111100 000000000 000100 233333444444433
Q ss_pred ccccCcCCCCccCCCCCCCcccccccceeeEehHHHHHhCCCccccccchhhhhhhhhhh
Q psy11373 221 FLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLL 280 (539)
Q Consensus 221 ~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~ 280 (539)
.++ +.-.+|+..++||++++++||+..+...++|||+..--.+
T Consensus 238 ~~~-----------------~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksll 280 (431)
T KOG2547|consen 238 VLG-----------------FNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLL 280 (431)
T ss_pred ccc-----------------ccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 332 2235688899999999999999999999999997764433
No 114
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=89.11 E-value=0.16 Score=58.69 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=26.3
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH 285 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~ 285 (539)
+.|++.++||++++++|||++ |...||.+++++.+
T Consensus 418 ~~Gs~aviRReaLeeVGGfd~-------~titED~dlslRL~ 452 (852)
T PRK11498 418 FCGSCAVIRRKPLDEIGGIAV-------ETVTEDAHTSLRLH 452 (852)
T ss_pred cccceeeeEHHHHHHhcCCCC-------CccCccHHHHHHHH
Confidence 679999999999999999976 23345555555554
No 115
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=88.95 E-value=0.27 Score=56.21 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhhhh--hhhhhhcccCCcceecc----------cccccccchhhh
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDT--LLDMVNHLKPGVGLVHQ----------MPFTWDRKGFAA 307 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di--~~~~~~~~~p~~~~~~~----------~~~~w~~~~~~~ 307 (539)
+.|++.++||++++++|||++ ..++||+++.-- ...|+..+.|++.+.+. ++.||++|.++.
T Consensus 307 ~~Gs~~~iRR~al~~iGGf~~--~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p~sl~~~~~Qr~RWa~G~~qi 380 (713)
T TIGR03030 307 FCGSAAVLRREALDEIGGIAG--ETVTEDAETALKLHRRGWNSAYLDRPLIAGLAPETLSGHIGQRIRWAQGMMQI 380 (713)
T ss_pred ecCceeEEEHHHHHHcCCCCC--CCcCcHHHHHHHHHHcCCeEEEeccccccccCCCCHHHHHHHHHHHhcChHHH
Confidence 679999999999999999986 335666655311 12233334444433332 237799888763
No 116
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=88.45 E-value=0.31 Score=46.78 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=32.0
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc-------ccCCcceecc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH-------LKPGVGLVHQ 295 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~-------~~p~~~~~~~ 295 (539)
.++|+++++||++++++|||++ ++..||.++.++.. +.|.+.+.|.
T Consensus 159 ~~~g~~~~~r~~~~~~ig~~~~-------~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 159 FCCGSGAVVRREALDEIGGFPT-------DSVTEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred eecCceeeEeHHHHHHhCCCCc-------cceeccHHHHHHHHHcCceEEEecCcccccc
Confidence 3678999999999999999974 23334445444443 6677666655
No 117
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=88.22 E-value=2.7 Score=39.70 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=56.1
Q ss_pred hHHHHHHHHHcCCCCCeEEEEEeCCCC--CCcH-HHHHHHHHhCCCceEEEE-ecCcccCcchhhh-hHHHHHHhcC-Cc
Q psy11373 84 NLYSNLETFFTMSYPKYEICFCLEDDV--DPAV-PLVEKLCKKYPNVDTSVF-IGGQVVGVNPKIN-NMEPGYKAAK-YE 157 (539)
Q Consensus 84 ~l~~~L~Sl~~q~yp~~eIIvvdd~s~--D~t~-~il~~l~~~~p~~~~~~~-~~~~~~g~~~K~~-al~~g~~~a~-~d 157 (539)
.|+++--+...+...+.+++++...+. |+.. +.+++-.++|.++ ... ..+......-|.- .+..+.+.+. .+
T Consensus 5 ~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Di--l~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~ 82 (195)
T PF01762_consen 5 AIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDI--LQGDFVDSYRNLTLKTLAGLKWASKHCPNAK 82 (195)
T ss_pred HHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCce--EeeecccccchhhHHHHHHHHHHHhhCCchh
Confidence 455555554433335688888888777 4332 3344434556654 112 2223333334544 3344445554 89
Q ss_pred EEEEEcCCCCCChHHHHHHHHhh
Q psy11373 158 LILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 158 ~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
|++.+|+|+.+.++.|...+...
T Consensus 83 ~v~k~DDD~~vn~~~l~~~L~~~ 105 (195)
T PF01762_consen 83 YVLKVDDDVFVNPDRLVSFLKSL 105 (195)
T ss_pred heeecCcEEEEehHHhhhhhhhc
Confidence 99999999999888887777664
No 118
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=88.21 E-value=0.35 Score=49.27 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=38.8
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc-------ccCCcceeccc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH-------LKPGVGLVHQM 296 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~-------~~p~~~~~~~~ 296 (539)
++|+++++++++++++|||++-.|.+.| |+|+++|.. +.|+..++|..
T Consensus 167 ~~G~~~li~~~~~~~vG~~de~~F~y~e-----D~D~~~R~~~~G~~i~~~p~a~i~H~~ 221 (305)
T COG1216 167 LSGACLLIRREAFEKVGGFDERFFIYYE-----DVDLCLRARKAGYKIYYVPDAIIYHKI 221 (305)
T ss_pred cceeeeEEcHHHHHHhCCCCcccceeeh-----HHHHHHHHHHcCCeEEEeeccEEEEec
Confidence 6899999999999999999885555554 567777766 88999999973
No 119
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=88.07 E-value=0.43 Score=48.28 Aligned_cols=97 Identities=19% Similarity=0.319 Sum_probs=57.6
Q ss_pred cEEEEEecCCChh-hHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEe--------cC-cccCc
Q psy11373 71 GVTILKPLTGTDP-NLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFI--------GG-QVVGV 140 (539)
Q Consensus 71 ~VSIIIP~~ne~~-~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~--------~~-~~~g~ 140 (539)
.|.|+||+-...- ...+.-+++++ .+.+|+|-|+...+...+-+.+ +..+.. +. .....
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~----~~hliiv~d~~~~~~~~~p~g~-------~~~~y~~~di~~~lg~~~~i~~ 77 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS----PYHLIIVQDPDPNEEIKVPEGF-------DYEVYNRNDIERVLGAKTLIPF 77 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc----ceeEEEEeCCCccccccCCccc-------ceeeecHhhHHhhcCCcccccc
Confidence 5899999977332 33333444443 4889999887554443333322 222221 11 11121
Q ss_pred chh-hhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 141 NPK-INNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 141 ~~K-~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
| .+..+.|+-.++.||++++|.||.+..|.--..+..+
T Consensus 78 --~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v 116 (348)
T PF03214_consen 78 --KGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAV 116 (348)
T ss_pred --cccchhhhHhhhcccceEEEEccccccccCCccceehhh
Confidence 2 2344678889999999999999999777655544444
No 120
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=87.58 E-value=4.3 Score=40.08 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=56.8
Q ss_pred EEEEEec-CCChhhHHHHHHHHHcCCCCC-eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 72 VTILKPL-TGTDPNLYSNLETFFTMSYPK-YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 72 VSIIIP~-~ne~~~l~~~L~Sl~~q~yp~-~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
+||+|-+ ++..+.|.+.|+++.+. |. -||+|+=++...+- +. .+.. ...+.++++...++ +.+|.-.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~--~~l~~IvVvWn~~~~~P-~~-~~~~--~~~vpV~~~~~~~n-----sLnnRF~ 69 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASS--PSLRKIVVVWNNPNPPP-PS-SKWP--STGVPVRVVRSSRN-----SLNNRFL 69 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTS--TTEEEEEEEEE-TS--T-HH-HHHT-----S-EEEEEESSH-----HGGGGGS
T ss_pred CEEEEEecccchHHHHHHHHHHHcC--CCCCeEEEEeCCCCCCC-cc-cccC--CCCceEEEEecCCc-----cHHhcCc
Confidence 4789999 99999999999999554 43 45665544422221 11 1221 12244554443222 2233333
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
-....+.|-|+.+|+|..++++.|+..-+..
T Consensus 70 p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W 100 (247)
T PF09258_consen 70 PDPEIETDAVLSLDDDVMLSCDELEFAFQVW 100 (247)
T ss_dssp --TT--SSEEEEEETTEEE-HHHHHHHHHHH
T ss_pred CccccCcceEEEecCCcccCHHHHHHHHHHH
Confidence 4456789999999999999999999888777
No 121
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=87.56 E-value=3.3 Score=42.83 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=40.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHcCCC-CCeEEEEEeCCCCCCcHHHHHH
Q psy11373 69 YPGVTILKPLTGTDPNLYSNLETFFTMSY-PKYEICFCLEDDVDPAVPLVEK 119 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~~l~~~L~Sl~~q~y-p~~eIIvvdd~s~D~t~~il~~ 119 (539)
.+.+.|||=++|..+.++..|+|+.+... .+.-+|+--|.-+++..++++.
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 35689999999999999999999987644 3467777777777776677765
No 122
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=86.93 E-value=5.5 Score=38.19 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=59.5
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+-| .+-+..+++++.+... .+++++..... +.+++...++ .++++......| ...++..++...
T Consensus 20 l~~v~g-kpli~~~i~~l~~~~i--~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g---~~~ai~~a~~~~ 86 (229)
T cd02540 20 LHPLAG-KPMLEHVLDAARALGP--DRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLG---TGHAVKQALPAL 86 (229)
T ss_pred cceeCC-ccHHHHHHHHHHhCCC--CeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCC---CHHHHHHHHHhh
Confidence 445544 4788999999876432 35566554321 2333333322 234444444444 577777777765
Q ss_pred C--CcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 K--YELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~--~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+ .|.++++++|. .++++.+.++++.+
T Consensus 87 ~~~~~~vli~~~D~p~~~~~~i~~l~~~~ 115 (229)
T cd02540 87 KDFEGDVLVLYGDVPLITPETLQRLLEAH 115 (229)
T ss_pred ccCCCeEEEEeCCccccCHHHHHHHHHHH
Confidence 4 68999999999 46899999998877
No 123
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=85.85 E-value=0.43 Score=46.53 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=24.9
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKE 276 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~ 276 (539)
+++|+++++||++++++|||++. .+.||+++.
T Consensus 160 ~~~g~~~~~rr~~~~~vgg~~~~--~~~eD~~l~ 191 (241)
T cd06427 160 PLGGTSNHFRTDVLRELGGWDPF--NVTEDADLG 191 (241)
T ss_pred ecCCchHHhhHHHHHHcCCCCcc--cchhhHHHH
Confidence 46788999999999999999873 345665544
No 124
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=85.76 E-value=13 Score=34.08 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.5
Q ss_pred ecCcccCcchhhhh----HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 133 IGGQVVGVNPKINN----MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 133 ~~~~~~g~~~K~~a----l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
..++|.+ |.+. .|.-.+..+-+|++++|+.+.+.++.|-+|.+.|
T Consensus 115 lKe~N~k---KinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 115 LKEKNAK---KINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred ecccccc---ccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 4455555 5443 3334455699999999999999999999998765
No 125
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=84.79 E-value=13 Score=37.36 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=29.7
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH 285 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~ 285 (539)
..|++++++|+.|.++|||++.... +..||+|+.+|..
T Consensus 168 ~~s~~~~i~r~~f~~iGGfDE~f~G----~G~ED~D~~~RL~ 205 (281)
T PF10111_consen 168 FASSCFLINREDFLEIGGFDERFRG----WGYEDIDFGYRLK 205 (281)
T ss_pred ccceEEEEEHHHHHHhCCCCccccC----CCcchHHHHHHHH
Confidence 4568999999999999999764321 3568888888876
No 126
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.62 E-value=6.4 Score=36.13 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHhcC--C
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKAAK--Y 156 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~a~--~ 156 (539)
++.+-++..++.+.+.. --+|+++.+...+ +. .+..... .+.++..+ ...| -..++..|++.++ .
T Consensus 24 ~g~~li~~~i~~l~~~~--~~~i~vv~~~~~~---~~-~~~~~~~---~~~~~~~~~~~~G---~~~~i~~al~~~~~~~ 91 (186)
T cd04182 24 DGKPLLRHALDAALAAG--LSRVIVVLGAEAD---AV-RAALAGL---PVVVVINPDWEEG---MSSSLAAGLEALPADA 91 (186)
T ss_pred CCeeHHHHHHHHHHhCC--CCcEEEECCCcHH---HH-HHHhcCC---CeEEEeCCChhhC---HHHHHHHHHHhccccC
Confidence 45677888899887652 2356666543222 11 2221222 22333332 2233 4667788888776 7
Q ss_pred cEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 157 ELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 157 d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
|+++++.+|. .++++.++++++.+
T Consensus 92 ~~vlv~~~D~P~i~~~~i~~l~~~~ 116 (186)
T cd04182 92 DAVLILLADQPLVTAETLRALIDAF 116 (186)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 9999999999 46999999999887
No 127
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=84.61 E-value=10 Score=34.03 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=61.3
Q ss_pred EecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHhc
Q psy11373 76 KPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 76 IP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~a 154 (539)
+|. ++.+-++.+++.+.+... -+|+++... + ++.+.+ .++ ++ +++.++ ...| -..++..|+...
T Consensus 19 ~~i-~g~~li~~~l~~l~~~~~--~~Ivvv~~~--~---~~~~~~-~~~-~~--~~v~~~~~~~G---~~~sl~~a~~~~ 83 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREAGV--DDIVVVTGE--E---EIYEYL-ERY-GI--KVVVDPEPGQG---PLASLLAALSQL 83 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHHTE--SEEEEEEST--H---HHHHHH-TTT-TS--EEEE-STSSCS---HHHHHHHHHHTS
T ss_pred eeE-CCccHHHHHHHHhhccCC--ceEEEecCh--H---HHHHHH-hcc-Cc--eEEEeccccCC---hHHHHHHHHHhc
Confidence 455 777889999999876532 367776655 2 222222 222 33 444443 3444 578888899988
Q ss_pred -CCcEEEEEcCCCC-CChHHHHHHHHhh
Q psy11373 155 -KYELILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 155 -~~d~i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
+.+.++++.+|.. ++++.++++++.+
T Consensus 84 ~~~~~vlv~~~D~p~~~~~~l~~l~~~~ 111 (160)
T PF12804_consen 84 PSSEPVLVLPCDQPFLSPELLRRLLEAL 111 (160)
T ss_dssp TTSSEEEEEETTETTS-HHHHHHHHHHH
T ss_pred ccCCCcEEEeCCccccCHHHHHHHHHHH
Confidence 8999999999995 5999999999998
No 128
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=83.84 E-value=26 Score=33.31 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEE-ecCcccCcchhhhhHHHHHHhcCCc-
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVF-IGGQVVGVNPKINNMEPGYKAAKYE- 157 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~-~~~~~~g~~~K~~al~~g~~~a~~d- 157 (539)
+..+-+...++..++-.+ -++|+|.... ..+..++..+. .+++++ +++...| -...+..|++++.++
T Consensus 29 ~g~plv~~~~~~a~~a~~--~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~G---ls~Sl~ag~~a~~~~~ 97 (199)
T COG2068 29 DGKPLVRASAETALSAGL--DRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQG---LSTSLKAGLRAADAEG 97 (199)
T ss_pred CCCcHHHHHHHHHHhcCC--CeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhh---HhHHHHHHHHhcccCC
Confidence 444566777776655322 3777777655 33344333332 234445 4445566 577788889888655
Q ss_pred -EEEEEcCCCC-CChHHHHHHHHhhCCC
Q psy11373 158 -LILISDSGIR-MKEDTLLDMVNHLKPG 183 (539)
Q Consensus 158 -~i~~lDaD~~-~~p~~L~~lv~~~~~~ 183 (539)
.++++-+|.- +.++.+.++++.+...
T Consensus 98 ~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 98 DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 9999999997 7999999999999444
No 129
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=83.58 E-value=4.7 Score=39.12 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEEE
Q psy11373 81 TDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELIL 160 (539)
Q Consensus 81 e~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i~ 160 (539)
..+-|..+|++|.+.. --|+++|.++-. .+.++++..++|. ..+++.++...-.| -...|..|....+++ ++
T Consensus 30 gr~ii~~~i~~L~~~g--i~e~vvV~~g~~---~~lve~~l~~~~~-~~~iv~N~~y~ktN-~~~Sl~~akd~~~~~-fi 101 (239)
T COG1213 30 GREIIYRTIENLAKAG--ITEFVVVTNGYR---ADLVEEFLKKYPF-NAKIVINSDYEKTN-TGYSLLLAKDYMDGR-FI 101 (239)
T ss_pred CeEeHHHHHHHHHHcC--CceEEEEeccch---HHHHHHHHhcCCc-ceEEEeCCCcccCC-ceeEEeeehhhhcCc-EE
Confidence 4457899999998753 367787775432 3567777788884 34455544332211 123455667777777 77
Q ss_pred EEcCCCCCChHHHHHHHHh
Q psy11373 161 ISDSGIRMKEDTLLDMVNH 179 (539)
Q Consensus 161 ~lDaD~~~~p~~L~~lv~~ 179 (539)
++|+|+..+|+.++++++.
T Consensus 102 i~~sD~vye~~~~e~l~~a 120 (239)
T COG1213 102 LVMSDHVYEPSILERLLEA 120 (239)
T ss_pred EEeCCEeecHHHHHHHHhC
Confidence 8999999999999999986
No 130
>KOG1476|consensus
Probab=83.32 E-value=19 Score=36.44 Aligned_cols=103 Identities=9% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCcEEEEEecCCChhh---HHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchh--
Q psy11373 69 YPGVTILKPLTGTDPN---LYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPK-- 143 (539)
Q Consensus 69 ~p~VSIIIP~~ne~~~---l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K-- 143 (539)
.|.|-||-|+|+.... |...-+++.. -|+...|||.|++ ++...+..+.++ .++.++.+....+.+...+
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~--V~nLhWIVVEd~~--~~~p~v~~~L~r-tgl~ythl~~~t~~~~~~~rg 160 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRL--VPNLHWIVVEDGE--GTTPEVSGILRR-TGLPYTHLVHKTPMGYKARRG 160 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhh--cCCeeEEEEecCC--CCCHHHHHHHHH-cCCceEEEeccCCCCCccccc
Confidence 6789999999998743 3333444432 3689999999985 222222233222 2333444444444443211
Q ss_pred hhhHHHHHHhc---------CCcEEEEEcCCCCCChHHHHHH
Q psy11373 144 INNMEPGYKAA---------KYELILISDSGIRMKEDTLLDM 176 (539)
Q Consensus 144 ~~al~~g~~~a---------~~d~i~~lDaD~~~~p~~L~~l 176 (539)
..+.|.|++.- ..-++.|-|+|...+=+..++|
T Consensus 161 ~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~ei 202 (330)
T KOG1476|consen 161 WEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEEI 202 (330)
T ss_pred hhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHHH
Confidence 44556665543 3458999999999998888885
No 131
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=83.22 E-value=13 Score=34.57 Aligned_cols=93 Identities=9% Similarity=0.131 Sum_probs=57.0
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEE-ecCcccCcchhhhhHHHHHHhc---C
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVF-IGGQVVGVNPKINNMEPGYKAA---K 155 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~-~~~~~~g~~~K~~al~~g~~~a---~ 155 (539)
++.+.++.+++.+++... -+++++.... ++..+.+.+.......+ .++ +.+...| ....+..|++.+ +
T Consensus 24 ~g~~ll~~~i~~~~~~~~--~~i~vv~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~G---~~~si~~gl~~~~~~~ 95 (190)
T TIGR03202 24 GETTLGSASLKTALSSRL--SKVIVVIGEK-YAHLSWLDPYLLADERI--MLVCCRDACEG---QAHSLKCGLRKAEAMG 95 (190)
T ss_pred CCccHHHHHHHHHHhCCC--CcEEEEeCCc-cchhhhhhHhhhcCCCe--EEEECCChhhh---HHHHHHHHHHHhccCC
Confidence 567778888877655321 3666666543 22222222221112222 333 3333334 456777888865 5
Q ss_pred CcEEEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 156 YELILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 156 ~d~i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
.|+++++++|.-. +++.++++++.+
T Consensus 96 ~d~vlv~~~D~P~v~~~~i~~L~~~~ 121 (190)
T TIGR03202 96 ADAVVILLADQPFLTADVINALLALA 121 (190)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 7999999999975 999999999987
No 132
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=82.81 E-value=1.3 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.008 Sum_probs=26.6
Q ss_pred cccccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc
Q psy11373 242 MPFTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH 285 (539)
Q Consensus 242 ~~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~ 285 (539)
..+.|++++++|+.|.++|||++... -+..||.|+..|..
T Consensus 17 ~~~~Gg~~~~~~~~f~~vnGfde~f~----gWG~ED~Dl~~Rl~ 56 (78)
T PF02709_consen 17 PNFFGGVFAISREDFEKVNGFDERFW----GWGGEDDDLYNRLW 56 (78)
T ss_dssp TT---SEEEEEHHHHHHTTSS-SS-T----SCSSHHHHHHHHHH
T ss_pred CCeeEEEEEEeHHHHHHcCCCCcccc----ccCccHHHHHHHHH
Confidence 34779999999999999999987443 24457777766555
No 133
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=82.56 E-value=26 Score=40.25 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=30.5
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeC
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLE 107 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd 107 (539)
.++|.+.|++-+++.++...+.++.+.+ .||+..++++..
T Consensus 89 ldYP~~eI~vi~~~nD~~T~~~~~~l~~-~~p~~~~v~~~~ 128 (727)
T PRK11234 89 LDYENYHIFVGTYPNDPATQADVDAVCA-RFPNVHKVVCAR 128 (727)
T ss_pred CCCCCeEEEEEecCCChhHHHHHHHHHH-HCCCcEEEEeCC
Confidence 3678899999999888877777888765 678876665544
No 134
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=82.40 E-value=10 Score=35.92 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=56.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhC-CCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKY-PNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~-p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
++|+.| .+-|...++.+.+... -+|+++.+...+ ++.+.+...+ ....+.+.......| -+.++..+.+.
T Consensus 23 ll~i~g-~pli~~~l~~l~~~g~--~~v~vv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~G---~~~~l~~a~~~ 93 (223)
T cd06915 23 LAPVAG-RPFLEYLLEYLARQGI--SRIVLSVGYLAE---QIEEYFGDGYRGGIRIYYVIEPEPLG---TGGAIKNALPK 93 (223)
T ss_pred ccEECC-cchHHHHHHHHHHCCC--CEEEEEcccCHH---HHHHHHcCccccCceEEEEECCCCCc---chHHHHHHHhh
Confidence 344444 4778889998876532 356666654333 2222222221 123333333344444 46677778777
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
...|.++++++|...+++ +.+++..+
T Consensus 94 ~~~~~~lv~~~D~~~~~~-~~~~l~~~ 119 (223)
T cd06915 94 LPEDQFLVLNGDTYFDVD-LLALLAAL 119 (223)
T ss_pred cCCCCEEEEECCcccCCC-HHHHHHHH
Confidence 767889999999987655 56666666
No 135
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=82.11 E-value=0.71 Score=43.38 Aligned_cols=47 Identities=30% Similarity=0.424 Sum_probs=29.3
Q ss_pred eeeEehHHHHHhCCCccccccchhhhhhhhh--hhhhhhcccCCcceec
Q psy11373 248 STLTRKSIFDELGGIKTFGCYLAEERMKEDT--LLDMVNHLKPGVGLVH 294 (539)
Q Consensus 248 ~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di--~~~~~~~~~p~~~~~~ 294 (539)
++++||++++++|||+.....+.||+++.-- ...++..+.|.+.+.|
T Consensus 128 ~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~ 176 (196)
T cd02520 128 SMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQP 176 (196)
T ss_pred eeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheecc
Confidence 6899999999999998755555666654311 1223333556644433
No 136
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=81.93 E-value=4.3 Score=42.11 Aligned_cols=120 Identities=10% Similarity=0.034 Sum_probs=67.1
Q ss_pred EEEEEecCCChhhHHHHHHHHHcC-CCCC-eEEEEEeCCCCCCcH--H----------------HHHHHHHh--------
Q psy11373 72 VTILKPLTGTDPNLYSNLETFFTM-SYPK-YEICFCLEDDVDPAV--P----------------LVEKLCKK-------- 123 (539)
Q Consensus 72 VSIIIP~~ne~~~l~~~L~Sl~~q-~yp~-~eIIvvdd~s~D~t~--~----------------il~~l~~~-------- 123 (539)
|=|-|+.|-.. ....+|.++.++ .+|+ ..|=||+....++.. + ....+...
T Consensus 2 IFvsiasyRD~-~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PF11397_consen 2 IFVSIASYRDP-ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWPD 80 (343)
T ss_pred EEEEEeeecCc-hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccccc
Confidence 44667888764 478888887764 5675 666666554332222 0 01111111
Q ss_pred ------CCCceEEEEecCcccCcchhhhhHHHHHHh-cCCcEEEEEcCCCCCChHHHHHHHHhh---CCCeeEEEeecee
Q psy11373 124 ------YPNVDTSVFIGGQVVGVNPKINNMEPGYKA-AKYELILISDSGIRMKEDTLLDMVNHL---KPGVGLVHQMPFT 193 (539)
Q Consensus 124 ------~p~~~~~~~~~~~~~g~~~K~~al~~g~~~-a~~d~i~~lDaD~~~~p~~L~~lv~~~---~~~vg~V~g~~~~ 193 (539)
..++++..+......|. ..|...+-+. -+-+|.+-+||.++..++|=+.+++.+ .....+.+..|..
T Consensus 81 ~~~~~~~~~Ir~~~~~~~~a~Gp---~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~ 157 (343)
T PF11397_consen 81 GALCLRSDQIRVIRVDASEARGP---CWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPG 157 (343)
T ss_pred ccccccCCeEEEEEeCHHHCcCh---HHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCC
Confidence 12232222222333442 3333333333 357899999999999999977777766 4556777775554
Q ss_pred cC
Q psy11373 194 WD 195 (539)
Q Consensus 194 ~~ 195 (539)
.+
T Consensus 158 ~~ 159 (343)
T PF11397_consen 158 YE 159 (343)
T ss_pred cc
Confidence 33
No 137
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=81.87 E-value=13 Score=37.71 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCcEEEEEecC--CChhhHHHHHHHHHcCCCCC----eEEEEEe-CCCCCCcHHHHHHHHHhCCC-c---eEEEEecCcc
Q psy11373 69 YPGVTILKPLT--GTDPNLYSNLETFFTMSYPK----YEICFCL-EDDVDPAVPLVEKLCKKYPN-V---DTSVFIGGQV 137 (539)
Q Consensus 69 ~p~VSIIIP~~--ne~~~l~~~L~Sl~~q~yp~----~eIIvvd-d~s~D~t~~il~~l~~~~p~-~---~~~~~~~~~~ 137 (539)
.+++.|=||+- ..+..|.++|.|++..-.|+ .-|+|.. |...+....+++++..+++. + .+.++..+..
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 34588888884 44567999999999765552 3333333 32223334555555443321 1 1222322211
Q ss_pred -----------cC-------cchhhhhHHHH----HHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 138 -----------VG-------VNPKINNMEPG----YKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 138 -----------~g-------~~~K~~al~~g----~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
.| +..| .++..+ +.+..++|.+.+.+|+...|+|+.++....
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsK-q~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v 194 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSK-QNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFV 194 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHh-hcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHH
Confidence 11 1111 122222 223488999999999999999999998877
No 138
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=81.74 E-value=11 Score=38.45 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChH
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKED 171 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~ 171 (539)
.+.|+-.++.+|++.+|.||.+..|
T Consensus 85 R~fGyL~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 85 RCFGYLVSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred hhhhheeecceEEEEECCCCCCCCC
Confidence 3568888899999999999999666
No 139
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=80.52 E-value=7.6 Score=37.11 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=57.3
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHh
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~ 153 (539)
++|+-+. +.|...|+++.+... -+|+++.....+. +.+.+..+...+++...... +..| -++++..+...
T Consensus 24 llpi~g~-~li~~~l~~l~~~gi--~~i~iv~~~~~~~---i~~~~~~~~~~~~i~~~~~~~~~~g---~~~~l~~~~~~ 94 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAAGI--RRIVVNTHHLADQ---IEAHLGDSRFGLRITISDEPDELLE---TGGGIKKALPL 94 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHCCC--CEEEEEccCCHHH---HHHHHhcccCCceEEEecCCCcccc---cHHHHHHHHHh
Confidence 4566555 888999999987643 3566665443222 22222222233444332222 2334 46677788777
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNH 179 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~ 179 (539)
.+.+.++++++|...+.+..+.+..+
T Consensus 95 ~~~~~~lv~~~D~i~~~~~~~~~~~~ 120 (221)
T cd06422 95 LGDEPFLVVNGDILWDGDLAPLLLLH 120 (221)
T ss_pred cCCCCEEEEeCCeeeCCCHHHHHHHH
Confidence 66688999999999888766554444
No 140
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=80.24 E-value=0.82 Score=48.23 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=26.0
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhh
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMK 275 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~ 275 (539)
..|+++++||++|+++|||++..+.+.||.++
T Consensus 209 ~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L 240 (384)
T TIGR03469 209 AAGGCILIRREALERIGGIAAIRGALIDDCTL 240 (384)
T ss_pred ecceEEEEEHHHHHHcCCHHHHhhCcccHHHH
Confidence 56999999999999999998866656666533
No 141
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=79.14 E-value=28 Score=33.73 Aligned_cols=102 Identities=8% Similarity=0.083 Sum_probs=60.7
Q ss_pred CcEEEEEecCCChhh---HHHHHHHHHcCCCCCeEEEEEeCCC--CCCcHHHHHHHHHhCCCceEEEEecCcc---cCcc
Q psy11373 70 PGVTILKPLTGTDPN---LYSNLETFFTMSYPKYEICFCLEDD--VDPAVPLVEKLCKKYPNVDTSVFIGGQV---VGVN 141 (539)
Q Consensus 70 p~VSIIIP~~ne~~~---l~~~L~Sl~~q~yp~~eIIvvdd~s--~D~t~~il~~l~~~~p~~~~~~~~~~~~---~g~~ 141 (539)
|.+-||-|+|..... |.+.-+.|..- |++-.|||+|+. ++.+.+++++- ++.++.+....+ ....
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV--p~l~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~~~~~~~~~ 73 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLV--PPLHWIVVEDSEEKTPLVAELLRRS-----GLMYTHLNAKTPSDPTWLK 73 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcC--CceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeccCCCCCcccCC
Confidence 457889999986643 44445555433 579999999986 22333444332 233333322211 1111
Q ss_pred -hhhhhHHHHHHhc-------CCcEEEEEcCCCCCChHHHHHHHH
Q psy11373 142 -PKINNMEPGYKAA-------KYELILISDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 142 -~K~~al~~g~~~a-------~~d~i~~lDaD~~~~p~~L~~lv~ 178 (539)
.-..+.|.|++.. ..-++.|.|+|...+-+..++|-+
T Consensus 74 ~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~ 118 (223)
T cd00218 74 PRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRK 118 (223)
T ss_pred cccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhc
Confidence 1134556666543 346899999999999999888654
No 142
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=78.95 E-value=16 Score=33.69 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=56.4
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc-ccCcchhhhhHHHHHH-hcCCc
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ-VVGVNPKINNMEPGYK-AAKYE 157 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~-~~g~~~K~~al~~g~~-~a~~d 157 (539)
++.+.+...++.+.+... -+|+++.+...+ ++.+.+..++ .+.++.... ..| -...+..|++ ..+.|
T Consensus 23 ~g~pll~~~i~~l~~~~~--~~iivv~~~~~~---~~~~~~~~~~---~v~~v~~~~~~~g---~~~si~~~l~~~~~~~ 91 (188)
T TIGR03310 23 KGKTILEHVVDNALRLFF--DEVILVLGHEAD---ELVALLANHS---NITLVHNPQYAEG---QSSSIKLGLELPVQSD 91 (188)
T ss_pred CCeeHHHHHHHHHHHcCC--CcEEEEeCCcHH---HHHHHhccCC---CeEEEECcChhcC---HHHHHHHHhcCCCCCC
Confidence 456778888988876432 356666554332 2333332222 234444332 234 3556677777 45678
Q ss_pred EEEEEcCCCC-CChHHHHHHHHhh
Q psy11373 158 LILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 158 ~i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
.++++++|.- ++++.++++++.+
T Consensus 92 ~vlv~~~D~P~i~~~~i~~l~~~~ 115 (188)
T TIGR03310 92 GYLFLLGDQPFVTPDIIQLLLEAF 115 (188)
T ss_pred EEEEEeCCcCCCCHHHHHHHHHHH
Confidence 9999999995 5999999999877
No 143
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=78.93 E-value=1.6 Score=41.46 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=25.9
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERM 274 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~ 274 (539)
.++|+++++||++++++|||++..+...||.+
T Consensus 154 ~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~ 185 (229)
T cd04192 154 MCNGANMAYRKEAFFEVGGFEGNDHIASGDDE 185 (229)
T ss_pred ccccceEEEEHHHHHHhcCCccccccccCCHH
Confidence 35789999999999999999886665556553
No 144
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=77.27 E-value=14 Score=35.76 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=55.0
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCC--ceEEEEecCcccCcchhhhhHHHHHHhc-CC
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPN--VDTSVFIGGQVVGVNPKINNMEPGYKAA-KY 156 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~--~~~~~~~~~~~~g~~~K~~al~~g~~~a-~~ 156 (539)
++.+-+..+++++.+...- -+|+|+.+.. ....+++...++.- .++.++.++. + ....+..|++.. ..
T Consensus 28 ~gkpll~~~i~~~~~~~~~-~~ivVv~~~~---~~~~~~~~~~~~~~~~~~~~~v~~g~--~---r~~sv~~gl~~~~~~ 98 (230)
T PRK13385 28 VGEPIFIHALRPFLADNRC-SKIIIVTQAQ---ERKHVQDLMKQLNVADQRVEVVKGGT--E---RQESVAAGLDRIGNE 98 (230)
T ss_pred CCeEHHHHHHHHHHcCCCC-CEEEEEeChh---hHHHHHHHHHhcCcCCCceEEcCCCc--h---HHHHHHHHHHhccCC
Confidence 4667889999988754221 3566655432 22223333233321 1223222221 1 246667777765 45
Q ss_pred cEEEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 157 ELILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 157 d~i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
++++++|+|.-. +++.++++++.+
T Consensus 99 d~vli~~~d~P~i~~~~i~~li~~~ 123 (230)
T PRK13385 99 DVILVHDGARPFLTQDIIDRLLEGV 123 (230)
T ss_pred CeEEEccCCCCCCCHHHHHHHHHHH
Confidence 889999999976 999999999988
No 145
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=77.25 E-value=57 Score=37.28 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCC
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDD 109 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s 109 (539)
-++|...|++-+|-.+..-.+.++.+.+ .||.+++|.+.++.
T Consensus 97 ldYp~~~I~v~~~~nD~~T~~~~~~~~~-~~p~~~~v~~~~~g 138 (703)
T PRK15489 97 LDYRRYVIFVGTYPNDAETITEVERMRR-RYKRLVRVEVPHDG 138 (703)
T ss_pred CCCCCeEEEEEecCCCccHHHHHHHHhc-cCCcEEEEEcCCCC
Confidence 3678888888887777666666776654 57888888876653
No 146
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=77.24 E-value=25 Score=34.04 Aligned_cols=91 Identities=8% Similarity=0.109 Sum_probs=50.2
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELI 159 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i 159 (539)
++.+-|+..++.+.+.. --+|+++.+. +.+++...++ ++.+....+....|.++-..+ ..++.....+.+
T Consensus 25 ~Gkpll~~~l~~l~~~~--i~~ivvv~~~------~~i~~~~~~~-~~~v~~~~~~~~~gt~~~~~~-~~~~~~~~~~~v 94 (245)
T PRK05450 25 GGKPMIVRVYERASKAG--ADRVVVATDD------ERIADAVEAF-GGEVVMTSPDHPSGTDRIAEA-AAKLGLADDDIV 94 (245)
T ss_pred CCcCHHHHHHHHHHhcC--CCeEEEECCc------HHHHHHHHHc-CCEEEECCCcCCCchHHHHHH-HHhcCCCCCCEE
Confidence 44677888888887642 2456665532 2233333333 333322122333342221111 112222256889
Q ss_pred EEEcCCC-CCChHHHHHHHHhh
Q psy11373 160 LISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 160 ~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+++++|. .++++.++++++.+
T Consensus 95 lv~~~D~Pli~~~~l~~li~~~ 116 (245)
T PRK05450 95 VNVQGDEPLIPPEIIDQVAEPL 116 (245)
T ss_pred EEecCCCCCCCHHHHHHHHHHH
Confidence 9999999 67999999999877
No 147
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=76.96 E-value=17 Score=34.29 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=56.0
Q ss_pred EecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhC--CCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 76 KPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKY--PNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 76 IP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~--p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
+|+.| .+-+..+++++.+... -+|+++.+...+ + +++...+. ....+..+..+...| -..++..+.+.
T Consensus 24 l~v~g-~pli~~~l~~l~~~g~--~~i~vv~~~~~~---~-i~~~~~~~~~~~~~i~~~~~~~~~g---~~~al~~~~~~ 93 (217)
T cd04181 24 LPIAG-KPILEYIIERLARAGI--DEIILVVGYLGE---Q-IEEYFGDGSKFGVNIEYVVQEEPLG---TAGAVRNAEDF 93 (217)
T ss_pred cEECC-eeHHHHHHHHHHHCCC--CEEEEEeccCHH---H-HHHHHcChhhcCceEEEEeCCCCCc---cHHHHHHhhhh
Confidence 44444 4788999999887542 356666654322 2 22222221 123344344444444 46777777777
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
...+.++++++|.....+..+ +++..
T Consensus 94 ~~~~~~lv~~~D~~~~~~~~~-~~~~~ 119 (217)
T cd04181 94 LGDDDFLVVNGDVLTDLDLSE-LLRFH 119 (217)
T ss_pred cCCCCEEEEECCeecCcCHHH-HHHHH
Confidence 677889999999988777544 44444
No 148
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=76.40 E-value=21 Score=32.72 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=55.9
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHhcCCcE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKAAKYEL 158 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~a~~d~ 158 (539)
++.+.++.+++.+.+. . -+|+++.+...+. . ... ++ +++.+. ...| -...+..|++..+.|.
T Consensus 24 ~g~~ll~~~i~~l~~~-~--~~iivv~~~~~~~----~----~~~-~~--~~v~~~~~~~G---~~~si~~~l~~~~~~~ 86 (181)
T cd02503 24 GGKPLLEHVLERLKPL-V--DEVVISANRDQER----Y----ALL-GV--PVIPDEPPGKG---PLAGILAALRAAPADW 86 (181)
T ss_pred CCEEHHHHHHHHHHhh-c--CEEEEECCCChHH----H----hhc-CC--cEeeCCCCCCC---CHHHHHHHHHhcCCCe
Confidence 4567788888888653 2 3566665443222 1 111 22 333332 2334 4677888998888999
Q ss_pred EEEEcCCCC-CChHHHHHHHHhh
Q psy11373 159 ILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 159 i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
++++++|.- ++++.++++++.+
T Consensus 87 vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 87 VLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred EEEEeCCcCCCCHHHHHHHHHhh
Confidence 999999996 5999999999887
No 149
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=76.14 E-value=28 Score=33.40 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=55.3
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHH-HHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVE-KLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~-~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
++|+.|. +-|+.+|+++.++.. -+++++.. ......+.++ .+....++..+. .......| -+.++..+...
T Consensus 23 ll~i~g~-pli~~~l~~l~~~g~--~~ivvv~~-~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~g---~~~~l~~a~~~ 94 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAKIFD--SRFIFICR-DEHNTKFHLDESLKLLAPNATVV-ELDGETLG---AACTVLLAADL 94 (231)
T ss_pred eeEECCE-EHHHHHHHhhhccCC--ceEEEEEC-hHHhhhhhHHHHHHHhCCCCEEE-EeCCCCCc---HHHHHHHHHhh
Confidence 4566664 788999999977532 34555543 2222222222 222223444442 23344444 46677777666
Q ss_pred cC-CcEEEEEcCCCCCChHHHHHHHHh
Q psy11373 154 AK-YELILISDSGIRMKEDTLLDMVNH 179 (539)
Q Consensus 154 a~-~d~i~~lDaD~~~~p~~L~~lv~~ 179 (539)
.. .+.++++++|...+.+..+.+..+
T Consensus 95 l~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 95 IDNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred cCCCCCEEEEecceeeccCHHHHHHHh
Confidence 53 477888999999888766555433
No 150
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=75.87 E-value=39 Score=32.97 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=54.1
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHh---cC
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKA---AK 155 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~---a~ 155 (539)
++.+-|..+++.+.+.. --+|+++.|+ + + +++..+++. +++ +.... ...|. ..+..+++. .+
T Consensus 22 ~GkPli~~~le~~~~~~--~d~VvVvt~~--~---~-i~~~~~~~g-~~~-v~~~~~~~~Gt----~r~~~~~~~l~~~~ 87 (238)
T TIGR00466 22 FGKPMIVHVAENANESG--ADRCIVATDD--E---S-VAQTCQKFG-IEV-CMTSKHHNSGT----ERLAEVVEKLALKD 87 (238)
T ss_pred CCcCHHHHHHHHHHhCC--CCeEEEEeCH--H---H-HHHHHHHcC-CEE-EEeCCCCCChh----HHHHHHHHHhCCCC
Confidence 45667888888876542 2356666542 1 1 233333332 222 12222 22232 222223322 25
Q ss_pred CcEEEEEcCCCC-CChHHHHHHHHhh-CCCeeEEEe
Q psy11373 156 YELILISDSGIR-MKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 156 ~d~i~~lDaD~~-~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
.|+++++|+|.- ++|+.++++++.+ +++.++++.
T Consensus 88 ~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~ 123 (238)
T TIGR00466 88 DERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAAL 123 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEE
Confidence 789999999998 5999999999988 444444443
No 151
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=72.39 E-value=19 Score=38.48 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=61.3
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+.+ .+-+...++++.+... .+++++..... +.+++...++ + +.++...+..| -..++..++...
T Consensus 22 l~~i~g-kpli~~~l~~l~~~g~--~~iiiv~~~~~----~~i~~~~~~~-~--i~~~~~~~~~G---~~~ai~~a~~~l 88 (451)
T TIGR01173 22 LHPLAG-KPMLEHVIDAARALGP--QKIHVVYGHGA----EQVRKALANR-D--VNWVLQAEQLG---TGHAVLQALPFL 88 (451)
T ss_pred hceeCC-ccHHHHHHHHHHhCCC--CeEEEEECCCH----HHHHHHhcCC-C--cEEEEcCCCCc---hHHHHHHHHHhc
Confidence 455545 4788999999876543 35555544322 2233333333 2 33344444444 466777777765
Q ss_pred C-CcEEEEEcCCC-CCChHHHHHHHHhh-CCCeeEE
Q psy11373 155 K-YELILISDSGI-RMKEDTLLDMVNHL-KPGVGLV 187 (539)
Q Consensus 155 ~-~d~i~~lDaD~-~~~p~~L~~lv~~~-~~~vg~V 187 (539)
+ .|.++++++|. .++++.++++++.+ +.+..++
T Consensus 89 ~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~ 124 (451)
T TIGR01173 89 PDDGDVLVLYGDVPLISAETLERLLEAHRQNGITLL 124 (451)
T ss_pred CCCCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEE
Confidence 3 47899999998 56899999999877 4443333
No 152
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=72.28 E-value=18 Score=34.85 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=54.7
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+.|. +.|...++++.++.. -+|+++.....+...+.+++.. +...+.+.........| -++++..+....
T Consensus 25 llpv~g~-pli~~~l~~l~~~g~--~~v~iv~~~~~~~~~~~l~~~~-~~~~~~i~~~~~~~~~G---~~~al~~a~~~~ 97 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKAGV--KEIILAVNYRPEDMVPFLKEYE-KKLGIKITFSIETEPLG---TAGPLALARDLL 97 (233)
T ss_pred cCeECCc-chHHHHHHHHHHCCC--cEEEEEeeeCHHHHHHHHhccc-ccCCeEEEeccCCCCCc---cHHHHHHHHHHh
Confidence 4466554 788999999987643 3555555543333333333221 11233332222334444 456777776665
Q ss_pred CC--cEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 155 KY--ELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~~--d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
+. +-++++++|...+.+ ++++++..
T Consensus 98 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~ 124 (233)
T cd06425 98 GDDDEPFFVLNSDVICDFP-LAELLDFH 124 (233)
T ss_pred ccCCCCEEEEeCCEeeCCC-HHHHHHHH
Confidence 42 335677999987766 47777765
No 153
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=72.12 E-value=2.5 Score=39.58 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.6
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEE 272 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed 272 (539)
+..|.+.++||++++++||+++....+.||
T Consensus 162 ~~~G~~~~~r~~~l~~vgg~~~~~~~~~ED 191 (191)
T cd06436 162 GLGGNGQFMRLSALDGLIGEEPWSDSLLED 191 (191)
T ss_pred EECCeeEEEeHHHHHHhhcCCCCchhhcCC
Confidence 467899999999999999998876677776
No 154
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=71.62 E-value=17 Score=37.22 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=57.7
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCc-HHHHHHH-HHhCCCceEEEEe---cCcccCcchhhhhHHHHHHhc
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPA-VPLVEKL-CKKYPNVDTSVFI---GGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t-~~il~~l-~~~~p~~~~~~~~---~~~~~g~~~K~~al~~g~~~a 154 (539)
.|+....+||+|+.+ .+|+.|||+--=..+|-+ .+. .++ ..+.|...+.... .+.....|.....-.+|++++
T Consensus 17 ~~~~~t~~~l~siR~-~~P~A~IILSTW~~~d~~~l~~-D~vv~s~DPG~~~~~~~~~~~~~~~NiNrQi~St~aGL~~~ 94 (311)
T PF07507_consen 17 QEPDITKNCLASIRK-HFPGAEIILSTWEGQDISGLDY-DQVVISDDPGSNVVLYKKDGKPGPNNINRQIVSTLAGLKAA 94 (311)
T ss_pred ccchhHHHHHHHHHH-hCCCCEEEEECCCCCCcccCCc-ceEEecCCCCcceeeccCCCCCcccchhHHHHHHHHHHHHh
Confidence 456678999999965 699999999644433321 110 111 2344554321111 111222233344445689999
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 155 KYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
+.+|++=+=+|..+..+-+-++.+.+
T Consensus 95 ~~~Ya~KlRtD~~l~~~~~l~~~~~~ 120 (311)
T PF07507_consen 95 KTKYAMKLRTDNRLTGNNFLDLYEKY 120 (311)
T ss_pred CCceEEEEcccccccchHHHHHHHHh
Confidence 99999999999998544444444444
No 155
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=70.69 E-value=2.7 Score=40.26 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=33.1
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhh-------cccCCcceeccc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVN-------HLKPGVGLVHQM 296 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~-------~~~p~~~~~~~~ 296 (539)
..|+++++||++++++|||++..+.-. ||.++.++. ...|...+.|..
T Consensus 151 ~~~~~~~~rr~~~~~~ggfd~~~~~~~-----eD~d~~~r~~~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 151 LITSGSLISLEALEKVGGFDEDLFIDY-----VDTEWCLRARSKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred eeccceEEcHHHHHHhCCCCHHHcCcc-----chHHHHHHHHHcCCcEEEEcCeEEEecc
Confidence 456778999999999999986433222 355544444 377888887764
No 156
>PLN02458 transferase, transferring glycosyl groups
Probab=69.00 E-value=1e+02 Score=31.56 Aligned_cols=104 Identities=9% Similarity=-0.001 Sum_probs=61.3
Q ss_pred CcEEEEEecCCC-h---hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCccc-Cc-chh
Q psy11373 70 PGVTILKPLTGT-D---PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVV-GV-NPK 143 (539)
Q Consensus 70 p~VSIIIP~~ne-~---~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~-g~-~~K 143 (539)
+.+-||-|+|.. . ..|.+.-+.|..- -|++-.|||+|+. .|.+ +.++.++. ++.++.+....+. .. ...
T Consensus 112 rlIivVTPTY~rR~~Q~a~LTRLahTL~lV-p~pL~WIVVEd~~--~t~~-va~lLrrs-Gl~y~HL~~k~~~~~~~~r~ 186 (346)
T PLN02458 112 RLVIIVTPISTKDRYQGVLLRRLANTLRLV-PPPLLWIVVEGQS--DSEE-VSEMLRKT-GIMYRHLVFKENFTDPEAEL 186 (346)
T ss_pred ceEEEECCCCCCcchhHHHHHHHHHHHhcC-CCCceEEEEeCCC--CCHH-HHHHHHHc-CCceEEeccCCCCCCccchh
Confidence 458899999983 3 2344445555433 2368899999865 3333 22333332 2334444322221 11 112
Q ss_pred hhhHHHHHHhc----CCcEEEEEcCCCCCChHHHHHHHH
Q psy11373 144 INNMEPGYKAA----KYELILISDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 144 ~~al~~g~~~a----~~d~i~~lDaD~~~~p~~L~~lv~ 178 (539)
..+.|.|++.. ..-++.|.|+|...+-+..++|-+
T Consensus 187 ~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ 225 (346)
T PLN02458 187 DHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRD 225 (346)
T ss_pred HHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhc
Confidence 45667777665 446899999999999888888644
No 157
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=68.95 E-value=68 Score=30.84 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=57.8
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
+.|. ++.+-++.+++.+.+.... -+|+|+.+.... . +.+++....++ + .++.++...+ ......+++..
T Consensus 18 ll~l-~Gkpli~~~i~~l~~~~~~-~~ivVv~~~~~~-~-~~i~~~~~~~~-v--~~v~~~~~~~----l~~~~~~~~~~ 86 (233)
T cd02518 18 LKPL-GGKPLLEHLLDRLKRSKLI-DEIVIATSTNEE-D-DPLEALAKKLG-V--KVFRGSEEDV----LGRYYQAAEEY 86 (233)
T ss_pred cccc-CCccHHHHHHHHHHhCCCC-CeEEEECCCCcc-c-HHHHHHHHHcC-C--eEEECCchhH----HHHHHHHHHHc
Confidence 4444 4567788999988764321 356666554431 1 22333333322 2 3344433221 11222344445
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHhh-CCCeeEE
Q psy11373 155 KYELILISDSGIRM-KEDTLLDMVNHL-KPGVGLV 187 (539)
Q Consensus 155 ~~d~i~~lDaD~~~-~p~~L~~lv~~~-~~~vg~V 187 (539)
+.|+++++++|.-. +++.++++++.+ +.+..++
T Consensus 87 ~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 87 NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 78999999999975 999999999987 3333443
No 158
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=68.81 E-value=2.3 Score=39.34 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=23.7
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERM 274 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~ 274 (539)
++.|+++++||+++++ |||.. ..+.||+.
T Consensus 154 ~~~G~~~~~rr~~l~~-~g~~~--~~l~ED~~ 182 (183)
T cd06438 154 QLGGTGMCFPWAVLRQ-APWAA--HSLTEDLE 182 (183)
T ss_pred eecCchhhhHHHHHHh-CCCCC--CCcccccC
Confidence 5789999999999999 88864 55677763
No 159
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=67.95 E-value=32 Score=36.79 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=57.2
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhC-CCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKY-PNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~-p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
++|+-| .+.|+..|+.+.+... -+++++.....+. +++...++ ... .++......| -..++..+.+.
T Consensus 27 ll~v~g-kpli~~~l~~l~~~gi--~~ivvv~~~~~~~----i~~~~~~~~~~~--~~~~~~~~~G---~~~sl~~a~~~ 94 (446)
T PRK14353 27 LHPVAG-RPMLAHVLAAAASLGP--SRVAVVVGPGAEA----VAAAAAKIAPDA--EIFVQKERLG---TAHAVLAAREA 94 (446)
T ss_pred cCEECC-chHHHHHHHHHHhCCC--CcEEEEECCCHHH----HHHHhhccCCCc--eEEEcCCCCC---cHHHHHHHHHH
Confidence 445555 4788999999876533 3566665443222 23332222 222 2334444445 35666666665
Q ss_pred c--CCcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 154 A--KYELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 154 a--~~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
. ..|.++++++|. .++++.++++++..
T Consensus 95 l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~ 124 (446)
T PRK14353 95 LAGGYGDVLVLYGDTPLITAETLARLRERL 124 (446)
T ss_pred HhccCCCEEEEeCCcccCCHHHHHHHHHhH
Confidence 4 257788899999 67999999999866
No 160
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=67.30 E-value=63 Score=29.68 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=54.6
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC--cccCcchhhhhHHHHHHhcCCc
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG--QVVGVNPKINNMEPGYKAAKYE 157 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~--~~~g~~~K~~al~~g~~~a~~d 157 (539)
++.+.+...++.+.+. --+|+++.+... .+ ......++ +++... ...| -..++..|++..+.|
T Consensus 25 ~g~pll~~~l~~l~~~---~~~ivv~~~~~~---~~----~~~~~~~~--~~i~~~~~~~~g---~~~si~~al~~~~~~ 89 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ---VSDLAISANRNP---ER----YAQAGFGL--PVVPDALADFPG---PLAGILAGLRWAGTD 89 (186)
T ss_pred CCEEHHHHHHHHHHhh---CCEEEEEcCCCH---HH----HhhccCCC--cEEecCCCCCCC---CHHHHHHHHHhcCCC
Confidence 4567788888887542 235666654321 11 11111122 233322 2234 567788888888889
Q ss_pred EEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 158 LILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 158 ~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
.++++++|. .++++.++++++.+
T Consensus 90 ~vlv~~~D~P~i~~~~i~~l~~~~ 113 (186)
T TIGR02665 90 WVLTVPCDTPFLPEDLVARLAAAL 113 (186)
T ss_pred eEEEEecCCCcCCHHHHHHHHHHh
Confidence 999999998 56999999999987
No 161
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=67.04 E-value=87 Score=29.54 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=58.6
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|. ++.+-++.+++++.+.... -+|+++.+... .+..+.+........+.++.++. + ....+..|++..
T Consensus 22 l~~i-~Gkpll~~~i~~l~~~~~~-~~ivVv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~---~~~si~~al~~~ 91 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLAHPAI-DEIVVVVPPDD---IDLAKELAKYGLSKVVKIVEGGA--T---RQDSVLNGLKAL 91 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhcCCCC-CEEEEEeChhH---HHHHHHHHhcccCCCeEEECCch--H---HHHHHHHHHHhc
Confidence 4444 4567889999998764322 35666654332 22222221111111223222221 2 467788888876
Q ss_pred ---CCcEEEEEcCCCC-CChHHHHHHHHhh
Q psy11373 155 ---KYELILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 155 ---~~d~i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
+.|.++++++|.- ++++.++++++.+
T Consensus 92 ~~~~~~~vlv~~~D~P~i~~~~i~~li~~~ 121 (218)
T cd02516 92 PDADPDIVLIHDAARPFVSPELIDRLIDAL 121 (218)
T ss_pred ccCCCCEEEEccCcCCCCCHHHHHHHHHHH
Confidence 5789999999997 4999999999988
No 162
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=67.03 E-value=18 Score=34.70 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=56.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc--ccCcchhhhhHHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ--VVGVNPKINNMEPGYK 152 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~--~~g~~~K~~al~~g~~ 152 (539)
++|+-+ .+.|+..|+++.+... -+|+++..... +.+++...+.+++ .++..+. ..| -..++..+..
T Consensus 23 l~~~~g-~~li~~~l~~l~~~gi--~~i~vv~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~g---~~~s~~~~~~ 90 (229)
T cd02523 23 LLEING-KPLLERQIETLKEAGI--DDIVIVTGYKK----EQIEELLKKYPNI--KFVYNPDYAETN---NIYSLYLARD 90 (229)
T ss_pred eeeECC-EEHHHHHHHHHHHCCC--ceEEEEeccCH----HHHHHHHhccCCe--EEEeCcchhhhC---cHHHHHHHHH
Confidence 445544 4788999999877533 35666655422 2333333333333 3333332 233 4667777777
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHHHHh
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDMVNH 179 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~lv~~ 179 (539)
.. .+.++++++|+...++.++.+.+.
T Consensus 91 ~~-~~~~lv~~~D~~~~~~~~~~~~~~ 116 (229)
T cd02523 91 FL-DEDFLLLEGDVVFDPSILERLLSS 116 (229)
T ss_pred Hc-CCCEEEEeCCEecCHHHHHHHHcC
Confidence 66 577889999999998888777653
No 163
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=66.54 E-value=41 Score=32.77 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=62.3
Q ss_pred CChhhHHHHHHHHHcCCCCC-eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcC---
Q psy11373 80 GTDPNLYSNLETFFTMSYPK-YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAK--- 155 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~-~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~--- 155 (539)
++.+-++.+|+.++. .|. -+||++....+|+..+.+-. ....+ ++.++.++.. .......|++..+
T Consensus 30 ~g~pll~~tl~~f~~--~~~i~~Ivvv~~~~~~~~~~~~~~-~~~~~--~v~~v~GG~~-----R~~SV~~gL~~~~~~~ 99 (230)
T COG1211 30 GGRPLLEHTLEAFLE--SPAIDEIVVVVSPEDDPYFEKLPK-LSADK--RVEVVKGGAT-----RQESVYNGLQALSKYD 99 (230)
T ss_pred CCEEehHHHHHHHHh--CcCCCeEEEEEChhhhHHHHHhhh-hccCC--eEEEecCCcc-----HHHHHHHHHHHhhccC
Confidence 445567889999865 455 57777777766665543332 12223 2344443332 2233345555554
Q ss_pred CcEEEEEcCCCCC-ChHHHHHHHHhhCCCeeEEEeece
Q psy11373 156 YELILISDSGIRM-KEDTLLDMVNHLKPGVGLVHQMPF 192 (539)
Q Consensus 156 ~d~i~~lDaD~~~-~p~~L~~lv~~~~~~vg~V~g~~~ 192 (539)
.+++++.|+==-. +++.++++++..+...|++...|.
T Consensus 100 ~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv 137 (230)
T COG1211 100 SDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPV 137 (230)
T ss_pred CCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeec
Confidence 8999999987654 999999999554444455555444
No 164
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=65.81 E-value=40 Score=33.05 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=55.5
Q ss_pred EEecCCChhhHHHHHHHHHcC-CCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 75 LKPLTGTDPNLYSNLETFFTM-SYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q-~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
++|+-|. +-|...|+++.+. .. -+|+++.....+...+.+.+. .+...+.+..+...+..|. ++++..+...
T Consensus 25 llpv~g~-plI~~~l~~l~~~~gi--~~i~iv~~~~~~~i~~~l~~~-~~~~~~~i~~~~~~~~~Gt---~~al~~a~~~ 97 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKVPDL--KEVLLIGFYPESVFSDFISDA-QQEFNVPIRYLQEYKPLGT---AGGLYHFRDQ 97 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhcCCC--cEEEEEecCCHHHHHHHHHhc-ccccCceEEEecCCccCCc---HHHHHHHHHH
Confidence 5677666 8899999999763 22 366666554433322333221 1112334443344445553 4454444433
Q ss_pred ---cCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 154 ---AKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 154 ---a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
...+.++++.+|.....+ ++.+++..
T Consensus 98 l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h 126 (257)
T cd06428 98 ILAGNPSAFFVLNADVCCDFP-LQELLEFH 126 (257)
T ss_pred hhccCCCCEEEEcCCeecCCC-HHHHHHHH
Confidence 235678889999987654 77777765
No 165
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=65.65 E-value=57 Score=30.84 Aligned_cols=88 Identities=9% Similarity=0.105 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCc---
Q psy11373 81 TDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYE--- 157 (539)
Q Consensus 81 e~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d--- 157 (539)
+.+-+..+++.+.+..+-+ +|+|.-|+ ++..+++ .++. ..+.........+. .....++.....+
T Consensus 23 gkpLi~~~i~~a~~s~~~d-~IvVaTd~--~~i~~~~----~~~g-~~v~~~~~~~~~~~----~r~~~~~~~~~~~~~~ 90 (217)
T PF02348_consen 23 GKPLIEYVIERAKQSKLID-EIVVATDD--EEIDDIA----EEYG-AKVIFRRGSLADDT----DRFIEAIKHFLADDED 90 (217)
T ss_dssp TEEHHHHHHHHHHHTTTTS-EEEEEESS--HHHHHHH----HHTT-SEEEE--TTSSSHH----HHHHHHHHHHTCSTTS
T ss_pred CccHHHHHHHHHHhCCCCC-eEEEeCCC--HHHHHHH----HHcC-CeeEEcChhhcCCc----ccHHHHHHHhhhhHHh
Confidence 3456788888887755433 56655432 2222333 3444 34432222222332 2233455555555
Q ss_pred EEEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 158 LILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 158 ~i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
+++.+.+|+-+ +|..+.++++.+
T Consensus 91 ~vv~~~~d~Pll~~~~i~~~i~~~ 114 (217)
T PF02348_consen 91 IVVRLQGDSPLLDPTSIDRAIEDI 114 (217)
T ss_dssp EEEEESTTETT--HHHHHHHHHHH
T ss_pred hccccCCeeeECCHHHHHHHHHHH
Confidence 99999999987 999999999988
No 166
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=65.43 E-value=44 Score=33.64 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=58.3
Q ss_pred EEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC---cccCc--c-hhhh
Q psy11373 72 VTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG---QVVGV--N-PKIN 145 (539)
Q Consensus 72 VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~---~~~g~--~-~K~~ 145 (539)
++|+....|-.+.+..++.|++.-.-.++.+-+++|+.+++..+.+.+... .+++.+....-+ ..... + ....
T Consensus 3 ~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~-~~~~~i~f~~i~~~~~~~~~~~~~~~s~ 81 (280)
T cd06431 3 VAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWM-VPAVEVSFYNAEELKSRVSWIPNKHYSG 81 (280)
T ss_pred EEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhcc-ccCcEEEEEEhHHhhhhhccCcccchhh
Confidence 678888866678899999999875434589999988776666555544322 234455444321 11110 0 0011
Q ss_pred h---HHHHHHh---cCCcEEEEEcCCCCCChH
Q psy11373 146 N---MEPGYKA---AKYELILISDSGIRMKED 171 (539)
Q Consensus 146 a---l~~g~~~---a~~d~i~~lDaD~~~~p~ 171 (539)
. ..-.+.. .+.|-++.+|+|+++..+
T Consensus 82 ~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d 113 (280)
T cd06431 82 IYGLMKLVLTEALPSDLEKVIVLDTDITFATD 113 (280)
T ss_pred HHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC
Confidence 1 0111111 148899999999998544
No 167
>PLN03153 hypothetical protein; Provisional
Probab=65.06 E-value=22 Score=38.58 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhhCCCe
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHLKPGV 184 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~v 184 (539)
-+.++++++|+|+.+..+-|.++++.+|++-
T Consensus 209 pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptk 239 (537)
T PLN03153 209 PDVRWFVLGDDDTIFNADNLVAVLSKYDPSE 239 (537)
T ss_pred CCCCEEEEecCCccccHHHHHHHHhhcCCCC
Confidence 4789999999999998888888888775543
No 168
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=65.04 E-value=42 Score=32.69 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=55.1
Q ss_pred EEEec-CCChhhHHHHHHHHHcCCC-CCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc-cc-Cc--chhhhhH
Q psy11373 74 ILKPL-TGTDPNLYSNLETFFTMSY-PKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ-VV-GV--NPKINNM 147 (539)
Q Consensus 74 IIIP~-~ne~~~l~~~L~Sl~~q~y-p~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~-~~-g~--~~K~~al 147 (539)
|++.+ .+-...+..++.|+.+..- .++.+.++.++-++...+.++++... ++..++++.-+. .. .. ..+....
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~i~~~~~~~~~~~~~~~~~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKK-YNSSIEFIKIDNDDFKFFPATTDHISY 81 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHh-cCCeEEEEEcCHHHHhcCCcccccccH
Confidence 33433 3444667888999987433 25888888888777778888887654 344444442111 00 00 0011111
Q ss_pred -----HHHHHhc-CCcEEEEEcCCCCCChH
Q psy11373 148 -----EPGYKAA-KYELILISDSGIRMKED 171 (539)
Q Consensus 148 -----~~g~~~a-~~d~i~~lDaD~~~~p~ 171 (539)
-.....- +.|-++.+|+|+.+-.+
T Consensus 82 ~~y~rl~l~~ll~~~~rvlylD~D~lv~~d 111 (248)
T cd04194 82 ATYYRLLIPDLLPDYDKVLYLDADIIVLGD 111 (248)
T ss_pred HHHHHHHHHHHhcccCEEEEEeCCEEecCC
Confidence 1111111 58999999999988543
No 169
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=64.89 E-value=3.7 Score=40.10 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=16.2
Q ss_pred CCeEEEEEeCCCCCCcHHHHHHHH
Q psy11373 98 PKYEICFCLEDDVDPAVPLVEKLC 121 (539)
Q Consensus 98 p~~eIIvvdd~s~D~t~~il~~l~ 121 (539)
.+.|++++.|+.+--..+.++++.
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~ 95 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLY 95 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHH
Confidence 356888888887766666555543
No 170
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=64.73 E-value=1.1e+02 Score=29.51 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=51.2
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHhcCC--
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKAAKY-- 156 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~a~~-- 156 (539)
++.+-|+..++.+.+... --+|+++.+. +.+++...++ ++.+. .... ...| ..+ +..+++....
T Consensus 24 ~gkpll~~~l~~l~~~~~-i~~ivvv~~~------~~i~~~~~~~-~~~~~-~~~~~~~~g---t~~-~~~~~~~~~~~~ 90 (239)
T cd02517 24 AGKPMIQHVYERAKKAKG-LDEVVVATDD------ERIADAVESF-GGKVV-MTSPDHPSG---TDR-IAEVAEKLDADD 90 (239)
T ss_pred CCcCHHHHHHHHHHhCCC-CCEEEEECCc------HHHHHHHHHc-CCEEE-EcCcccCch---hHH-HHHHHHhcCCCC
Confidence 456778888888876411 1356665431 2333433333 23332 2222 2223 232 3444444444
Q ss_pred cEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 157 ELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 157 d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
|.++++++|. .++++.++++++.+
T Consensus 91 d~vlv~~gD~Pli~~~~l~~l~~~~ 115 (239)
T cd02517 91 DIVVNVQGDEPLIPPEMIDQVVAAL 115 (239)
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8899999999 67999999999877
No 171
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=64.00 E-value=74 Score=30.65 Aligned_cols=96 Identities=10% Similarity=0.175 Sum_probs=57.4
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc--ccCcchhhhhHHHHHHhc---
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ--VVGVNPKINNMEPGYKAA--- 154 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~--~~g~~~K~~al~~g~~~a--- 154 (539)
++.+-+..+++.+.+...- -+|+|..| | .++. +...++. ..+. +.++. ..+..+....+..|++..
T Consensus 22 ~GkpLi~~ti~~a~~s~~~-d~IvVstd---~--~~i~-~~a~~~g-~~v~-~~r~~~l~~d~~~~~~si~~~l~~l~~~ 92 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLF-DKVVVSTD---D--EEIA-EVAKSYG-ASVP-FLRPKELADDFTGTAPVVKHAIEELKLQ 92 (222)
T ss_pred CCcCHHHHHHHHHHhCCCC-CEEEEeCC---C--HHHH-HHHHHcC-CEeE-EeChHHHcCCCCCchHHHHHHHHHHhhc
Confidence 4566788899988775432 24444332 2 1233 3333443 2221 22222 223334566777777654
Q ss_pred -CCcEEEEEcCCCCC-ChHHHHHHHHhh-CCCe
Q psy11373 155 -KYELILISDSGIRM-KEDTLLDMVNHL-KPGV 184 (539)
Q Consensus 155 -~~d~i~~lDaD~~~-~p~~L~~lv~~~-~~~v 184 (539)
+.|+++++++|.-. +++.++++++.+ +.+.
T Consensus 93 ~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ 125 (222)
T TIGR03584 93 KQYDHACCIYATAPFLQAKILKEAFELLKQPNA 125 (222)
T ss_pred CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCC
Confidence 37999999999987 999999999998 4333
No 172
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=63.46 E-value=96 Score=33.39 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=59.3
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+.+. +-+...|+++.+... -+++++..... .++.+.+ .+... +.++.+.+..| -+.++..+.+..
T Consensus 25 l~pi~g~-pli~~~l~~l~~~gi--~~iiiv~~~~~---~~i~~~~-~~~~~--i~~~~~~~~~G---t~~al~~a~~~l 92 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREAGA--GRIVLVVGHQA---EKVREHF-AGDGD--VSFALQEEQLG---TGHAVACAAPAL 92 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhcCC--CeEEEEECCCH---HHHHHHh-ccCCc--eEEEecCCCCC---HHHHHHHHHHHh
Confidence 5666664 788889999876432 35666655332 2333332 22222 33334444445 456677776654
Q ss_pred C--CcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 K--YELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~--~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+ .|.++++++|. .+++..++++++.+
T Consensus 93 ~~~~~~vlv~~gD~p~~~~~~i~~l~~~~ 121 (459)
T PRK14355 93 DGFSGTVLILCGDVPLLRAETLQGMLAAH 121 (459)
T ss_pred hccCCcEEEEECCccCcCHHHHHHHHHHH
Confidence 3 47899999999 56899999999877
No 173
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=63.18 E-value=53 Score=34.59 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELI 159 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i 159 (539)
++.+.++.+++.+.+... --+|+++.+... .+..+.+...+.. ++++..+. .....+..|++..+.|++
T Consensus 31 ~GkPll~~tl~~l~~~~~-i~~IvVVv~~~~---~~~~~~~~~~~~~--v~~v~gG~-----~r~~SV~~gL~~l~~d~V 99 (378)
T PRK09382 31 GGKPLWLHVLENLSSAPA-FKEIVVVIHPDD---IAYMKKALPEIKF--VTLVTGGA-----TRQESVRNALEALDSEYV 99 (378)
T ss_pred CCeeHHHHHHHHHhcCCC-CCeEEEEeChHH---HHHHHHhcccCCe--EEEeCCCc-----hHHHHHHHHHHhcCCCeE
Confidence 456788999999876421 135666654322 2333333222221 22222221 134567778887777999
Q ss_pred EEEcCCCC-CChHHHHHHHHhhCCCeeEEEeec
Q psy11373 160 LISDSGIR-MKEDTLLDMVNHLKPGVGLVHQMP 191 (539)
Q Consensus 160 ~~lDaD~~-~~p~~L~~lv~~~~~~vg~V~g~~ 191 (539)
++.|+|.- ++++.++++++.++..-+++.+.+
T Consensus 100 LVhdadrPfv~~e~I~~li~~~~~~~a~i~~~p 132 (378)
T PRK09382 100 LIHDAARPFVPKELIDRLIEALDKADCVLPALP 132 (378)
T ss_pred EEeeccccCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999975 599999999998733334444433
No 174
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=63.17 E-value=21 Score=34.27 Aligned_cols=88 Identities=10% Similarity=0.051 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHcCCC--CCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcc-------cC----cchhhhhHHH
Q psy11373 83 PNLYSNLETFFTMSY--PKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQV-------VG----VNPKINNMEP 149 (539)
Q Consensus 83 ~~l~~~L~Sl~~q~y--p~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~-------~g----~~~K~~al~~ 149 (539)
..+..++.|+.+..- ..+.+.+++|+.+++..+.+++...+.............. .. .+.....--.
T Consensus 12 ~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~ 91 (250)
T PF01501_consen 12 EGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATFARLF 91 (250)
T ss_dssp HHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGGGGGG
T ss_pred HHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHHHHhh
Confidence 456778899987654 3577888888777766776766554443332111111100 00 0011111122
Q ss_pred HHHh-cCCcEEEEEcCCCCCCh
Q psy11373 150 GYKA-AKYELILISDSGIRMKE 170 (539)
Q Consensus 150 g~~~-a~~d~i~~lDaD~~~~p 170 (539)
..+. .+.|-++.+|+|+.+-.
T Consensus 92 i~~ll~~~drilyLD~D~lv~~ 113 (250)
T PF01501_consen 92 IPDLLPDYDRILYLDADTLVLG 113 (250)
T ss_dssp HHHHSTTSSEEEEE-TTEEESS
T ss_pred hHHHHhhcCeEEEEcCCeeeec
Confidence 3344 68999999999999843
No 175
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=62.73 E-value=65 Score=29.92 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELI 159 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i 159 (539)
++.+.++.+++.+.. .. -+|+++.+.. .+..+ +. .+ +++..... +..+-...+..|++..+.|++
T Consensus 28 ~g~~ll~~~i~~l~~-~~--~~i~vv~~~~----~~~~~----~~-~~--~~v~~~~~-~~~g~~~~i~~~l~~~~~~~v 92 (193)
T PRK00317 28 NGKPLIQHVIERLAP-QV--DEIVINANRN----LARYA----AF-GL--PVIPDSLA-DFPGPLAGILAGLKQARTEWV 92 (193)
T ss_pred CCEEHHHHHHHHHhh-hC--CEEEEECCCC----hHHHH----hc-CC--cEEeCCCC-CCCCCHHHHHHHHHhcCCCeE
Confidence 556778888888762 11 3566654321 11121 11 12 23333222 112245677788888888999
Q ss_pred EEEcCCCC-CChHHHHHHHHhh
Q psy11373 160 LISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 160 ~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
+++++|.- ++++.++++++.+
T Consensus 93 lv~~~D~P~i~~~~i~~l~~~~ 114 (193)
T PRK00317 93 LVVPCDTPFIPPDLVARLAQAA 114 (193)
T ss_pred EEEcCCcCCCCHHHHHHHHHhh
Confidence 99999995 5999999999977
No 176
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=62.07 E-value=5.2 Score=39.83 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=31.9
Q ss_pred cceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc-------ccCCcceecc
Q psy11373 246 GMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH-------LKPGVGLVHQ 295 (539)
Q Consensus 246 G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~-------~~p~~~~~~~ 295 (539)
+++++++|++++++|||++..+.. .+|.+.++|.. ..|++.+.|.
T Consensus 150 ~sg~li~~~~~~~iG~fde~~fi~-----~~D~e~~~R~~~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 150 SSGCLITREVYQRLGMMDEELFID-----HVDTEWSLRAQNYGIPLYIDPDIVLEHR 201 (281)
T ss_pred cCcceeeHHHHHHhCCccHhhccc-----chHHHHHHHHHHCCCEEEEeCCEEEEEe
Confidence 445689999999999997744322 24666666654 6787888776
No 177
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=60.83 E-value=87 Score=29.93 Aligned_cols=91 Identities=23% Similarity=0.344 Sum_probs=56.0
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc-CCcE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA-KYEL 158 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a-~~d~ 158 (539)
++.+-+..+++.+.+... --+|+++.+... ..++.+....... ...++..+. ...+.+..|++.. +.|.
T Consensus 29 ~g~pli~~~l~~l~~~~~-~~~ivvv~~~~~--~~~~~~~~~~~~~--~~~~~~~~~-----~~~~sv~~~l~~~~~~d~ 98 (227)
T PRK00155 29 GGKPILEHTLEAFLAHPR-IDEIIVVVPPDD--RPDFAELLLAKDP--KVTVVAGGA-----ERQDSVLNGLQALPDDDW 98 (227)
T ss_pred CCEEHHHHHHHHHHcCCC-CCEEEEEeChHH--HHHHHHHhhccCC--ceEEeCCcc-----hHHHHHHHHHHhCCCCCE
Confidence 456778889998875422 136666655332 1222222221111 122222211 2567777888775 6789
Q ss_pred EEEEcCCCC-CChHHHHHHHHhh
Q psy11373 159 ILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 159 i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
++++|+|.- ++++.++++++.+
T Consensus 99 vlv~~~D~P~i~~~~i~~li~~~ 121 (227)
T PRK00155 99 VLVHDAARPFLTPDDIDRLIEAA 121 (227)
T ss_pred EEEccCccCCCCHHHHHHHHHHH
Confidence 999999997 4999999999987
No 178
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=60.69 E-value=66 Score=32.13 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=50.3
Q ss_pred EEEEecCCChhh-HHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCC---ceEEEEecCcc-----c--Cc
Q psy11373 73 TILKPLTGTDPN-LYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPN---VDTSVFIGGQV-----V--GV 140 (539)
Q Consensus 73 SIIIP~~ne~~~-l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~---~~~~~~~~~~~-----~--g~ 140 (539)
-|||++.+..-. ...+|+.+.+..-. ..||+..-+ +|-+.+.++++.. .++ ++++-+...+. . |.
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~--~dl~~~~~~~l~~-~q~v~~vd~~~~~~~~~~~~~~~~~~~ 79 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGD--DDLSKEFCEKLLP-DQDVWFVDASCVIDPDYLGKSFSKKGF 79 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCc--cccCHHHHHHHhh-hhhhheecceEEeeccccccccccCCc
Confidence 378888875433 34666666543221 388887632 3334444444433 111 11121111111 1 43
Q ss_pred chhhhhHHHHHHhcCCcEEEEEcCCCCC--ChHHHHH
Q psy11373 141 NPKINNMEPGYKAAKYELILISDSGIRM--KEDTLLD 175 (539)
Q Consensus 141 ~~K~~al~~g~~~a~~d~i~~lDaD~~~--~p~~L~~ 175 (539)
.-|.- |+-.++.|=++++|||+++ +|+.|=+
T Consensus 80 ~~K~l----A~l~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 80 QNKWL----ALLFSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred hhhhh----hhhhCCcceEEEEcCCcccccCHHHHhc
Confidence 33332 4456789999999999997 6665444
No 179
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=60.15 E-value=81 Score=29.80 Aligned_cols=93 Identities=8% Similarity=0.228 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc-ccCcchhhhhHHHHHHhcC---
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ-VVGVNPKINNMEPGYKAAK--- 155 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~-~~g~~~K~~al~~g~~~a~--- 155 (539)
++.+-+..+++.+.+.... -+|+++.| ++ ++. +...++.- ...+....+ ..|..+-...+..+++...
T Consensus 24 ~Gkpll~~~l~~l~~~~~~-~~IvV~~~--~~---~i~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~ 95 (223)
T cd02513 24 GGKPLIAWTIEAALESKLF-DRVVVSTD--DE---EIA-EVARKYGA-EVPFLRPAELATDTASSIDVILHALDQLEELG 95 (223)
T ss_pred CCccHHHHHHHHHHhCCCC-CEEEEECC--cH---HHH-HHHHHhCC-CceeeCChHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 4456778888888764321 24555432 11 222 22223221 111111111 1222234555666665432
Q ss_pred --CcEEEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 156 --YELILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 156 --~d~i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
.|.++++++|.-. +++.++++++.+
T Consensus 96 ~~~d~vlv~~~D~P~i~~~~i~~~i~~~ 123 (223)
T cd02513 96 RDFDIVVLLQPTSPLRSAEDIDEAIELL 123 (223)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999975 999999999988
No 180
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=59.76 E-value=78 Score=30.28 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=53.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCC--CceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYP--NVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p--~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
++|+-|. +-+...|+++.+... -+|+++.....+. +++...+.. +.++.++..+...| -+.++..+..
T Consensus 25 l~~i~g~-~li~~~l~~l~~~~~--~~i~vv~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~g---~~~sl~~a~~ 94 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREAGI--EDIGIVVGPTGEE----IKEALGDGSRFGVRITYILQEEPLG---LAHAVLAARD 94 (236)
T ss_pred eeEECCc-chHHHHHHHHHHCCC--CEEEEEcCCCHHH----HHHHhcchhhcCCeEEEEECCCCCC---hHHHHHHHHH
Confidence 5555554 788899999876532 3666666553222 233222211 23344444444444 4667777777
Q ss_pred hcC-CcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 153 AAK-YELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 153 ~a~-~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
..+ .++ +++.+|...+++..+ ++..+
T Consensus 95 ~i~~~~~-li~~~D~~~~~~~~~-~~~~~ 121 (236)
T cd04189 95 FLGDEPF-VVYLGDNLIQEGISP-LVRDF 121 (236)
T ss_pred hcCCCCE-EEEECCeecCcCHHH-HHHHH
Confidence 654 555 557889988777554 44444
No 181
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=58.54 E-value=18 Score=41.38 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=59.1
Q ss_pred cEEEEEecCC--Ch-hhHHHHHHHHHcCCCCCeEEEEEeCCCCC--C-cHH----HHHHHHHhCC----CceEEEEecCc
Q psy11373 71 GVTILKPLTG--TD-PNLYSNLETFFTMSYPKYEICFCLEDDVD--P-AVP----LVEKLCKKYP----NVDTSVFIGGQ 136 (539)
Q Consensus 71 ~VSIIIP~~n--e~-~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D--~-t~~----il~~l~~~~p----~~~~~~~~~~~ 136 (539)
+.+.|+.|-. .- +.-.+.++.+++ .||+.+|-.+|...+. + ..+ .++.-++..+ .-.+++..++.
T Consensus 191 KF~yVVs~Q~yg~~~~~~a~~i~~Lm~-~~P~LrVAYide~~~~~~~~~~~yYS~Lv~~~~~~~~~g~~~~~yri~LpG~ 269 (817)
T PF02364_consen 191 KFTYVVSCQRYGKFKKEEAEDIEFLMR-AYPSLRVAYIDEVPDRNGGGEPEYYSVLVKGDCEIDENGKRQEIYRIKLPGN 269 (817)
T ss_pred CCCEEEecchhcCCChHHHHHHHHHHH-hCCceEEEEEeeecccCCCCCceEEEEEecCCccccccCcccceEEEECCCC
Confidence 4666777632 22 334566666664 7999999999965421 1 001 1111110000 11233333443
Q ss_pred ccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHH
Q psy11373 137 VVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMV 177 (539)
Q Consensus 137 ~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv 177 (539)
+.=--||..|-|.++--.+||++-.+|++- .+++++.+
T Consensus 270 pilGeGK~eNQNhaiiF~rGe~lQ~IDmNQ---DnYleE~l 307 (817)
T PF02364_consen 270 PILGEGKPENQNHAIIFTRGEYLQTIDMNQ---DNYLEEAL 307 (817)
T ss_pred CcCCCCCccccceeEEEEccccccccccch---hhhHHHHH
Confidence 332245999999999999999999999873 45555443
No 182
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=58.18 E-value=46 Score=32.53 Aligned_cols=102 Identities=8% Similarity=0.102 Sum_probs=56.1
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEE------EecCcc---------cC
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSV------FIGGQV---------VG 139 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~------~~~~~~---------~g 139 (539)
++|+.+ .+-|..+++++.+... -+|+++.....+...+.+++......++++.. +..+.. .|
T Consensus 23 llpv~~-~p~i~~~~~~~~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (253)
T cd02524 23 MVEIGG-RPILWHIMKIYSHYGH--NDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTG 99 (253)
T ss_pred EEEECC-EEHHHHHHHHHHhCCC--ceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccceeeecccccccceeecccC
Confidence 667655 4577888888876533 46777766544333333322111111222210 011100 00
Q ss_pred -cchhhhhHHHHHHhcCC-cEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 140 -VNPKINNMEPGYKAAKY-ELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 140 -~~~K~~al~~g~~~a~~-d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
..+-++++..+.+.... +.++++++|...+.+. +.+++..
T Consensus 100 ~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h 141 (253)
T cd02524 100 LNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFH 141 (253)
T ss_pred cccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHH
Confidence 11135667777777655 8899999999988777 8888755
No 183
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.74 E-value=8.7 Score=36.21 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=21.4
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhh
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEER 273 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~ 273 (539)
..++++++||+.++++|||++.. ..||+
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~~--~~ED~ 163 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPELP--LMEDV 163 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCccc--cccHH
Confidence 44668899999999999998754 44444
No 184
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=57.34 E-value=1.4e+02 Score=28.60 Aligned_cols=88 Identities=7% Similarity=0.091 Sum_probs=51.4
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEec-CcccCcchhhhhHHHHHHhcCCcE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIG-GQVVGVNPKINNMEPGYKAAKYEL 158 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~-~~~~g~~~K~~al~~g~~~a~~d~ 158 (539)
++.+-++..++++.+... --+|+++.++ + .++++.+++ ++++. ... ....|. . .+..+++..+.|.
T Consensus 25 ~GkPli~~~i~~l~~~~~-~~~ivv~t~~--~----~i~~~~~~~-~~~v~-~~~~~~~~g~---~-~~~~a~~~~~~d~ 91 (238)
T PRK13368 25 LGKPMIQHVYERAAQAAG-VEEVYVATDD--Q----RIEDAVEAF-GGKVV-MTSDDHLSGT---D-RLAEVMLKIEADI 91 (238)
T ss_pred CCcCHHHHHHHHHHhcCC-CCeEEEECCh--H----HHHHHHHHc-CCeEE-ecCccCCCcc---H-HHHHHHHhCCCCE
Confidence 345667888888876422 1356665432 2 233333333 23332 222 222232 2 2344555556789
Q ss_pred EEEEcCCC-CCChHHHHHHHHhh
Q psy11373 159 ILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 159 i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
++++++|. .+.++.++++++.+
T Consensus 92 ~lv~~~D~P~i~~~~i~~l~~~~ 114 (238)
T PRK13368 92 YINVQGDEPMIRPRDIDTLIQPM 114 (238)
T ss_pred EEEEcCCcCcCCHHHHHHHHHHH
Confidence 99999999 46999999999987
No 185
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=57.16 E-value=1.1e+02 Score=29.66 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=55.7
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCccc----Ccchhh---hhHHH--H
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVV----GVNPKI---NNMEP--G 150 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~----g~~~K~---~al~~--g 150 (539)
|-.+.+.-++.|+++..-..+.+.+++|+-+++..+.++++...+ +..++++.-.... ....+. .+... .
T Consensus 11 ~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i 89 (246)
T cd00505 11 EYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLY-NFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHL 89 (246)
T ss_pred chhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhcc-CceEEEEeccccCcchhhhhcCccccceeHHHHH
Confidence 455677889999987544368889998887777777777765433 3444443221100 000011 11111 1
Q ss_pred HHhc-CCcEEEEEcCCCCCChHHHHHHHHh
Q psy11373 151 YKAA-KYELILISDSGIRMKEDTLLDMVNH 179 (539)
Q Consensus 151 ~~~a-~~d~i~~lDaD~~~~p~~L~~lv~~ 179 (539)
-+.- ..|=++.+|+|+.+-. -++.+...
T Consensus 90 ~~llp~~~kvlYLD~D~iv~~-di~~L~~~ 118 (246)
T cd00505 90 PNLVPDYDKILYVDADILVLT-DIDELWDT 118 (246)
T ss_pred HHHhhccCeEEEEcCCeeecc-CHHHHhhc
Confidence 1111 5899999999999863 34444443
No 186
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=56.91 E-value=60 Score=31.28 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=61.2
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeE-EEEEeCCCCCCcHHHHHHHHHhCC--CceEEEEecCcccCcchhhhhHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYE-ICFCLEDDVDPAVPLVEKLCKKYP--NVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~e-IIvvdd~s~D~t~~il~~l~~~~p--~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
++|+.|..+-|...|+.+.+... -+ |+|+.... .+.+++...+.. .++++++..+...| -+.++..+.
T Consensus 24 ll~i~g~~pli~~~l~~l~~~g~--~~ii~V~~~~~----~~~i~~~~~~~~~~~~~i~~i~~~~~~G---ta~al~~a~ 94 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLANAGI--KEIIVVVNGYK----EEQIEEHLGSGYKFGVKIEYIVQPEPLG---TAGALLQAL 94 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHHTTC--SEEEEEEETTT----HHHHHHHHTTSGGGTEEEEEEEESSSSC---HHHHHHHTH
T ss_pred cceecCCCcchhhhhhhhcccCC--ceEEEEEeecc----cccccccccccccccccceeeecccccc---hhHHHHHHH
Confidence 45667776889999999987533 35 44443332 233444433433 23466666666666 577887777
Q ss_pred HhcCCcE----EEEEcCCCCCChHHHHHHHHhh
Q psy11373 152 KAAKYEL----ILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 152 ~~a~~d~----i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
...+.+- ++++.+|...+. -+..+++..
T Consensus 95 ~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~ 126 (248)
T PF00483_consen 95 DFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFH 126 (248)
T ss_dssp HHHTTSEE-SEEEEETTEEEEST-THHHHHHHH
T ss_pred HHhhhccccceEEEEeccccccc-hhhhHHHhh
Confidence 7776654 999999999887 445555554
No 187
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=56.83 E-value=9.3 Score=35.42 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=22.0
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhh
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEER 273 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~ 273 (539)
+.+++.++||++++++|||++. +...||+
T Consensus 149 ~~~~~~~~~r~~~~~iggf~~~-~~~~eD~ 177 (202)
T cd04184 149 YIGHLLVYRRSLVRQVGGFREG-FEGAQDY 177 (202)
T ss_pred CccceEeEEHHHHHHhCCCCcC-cccchhH
Confidence 4567789999999999999874 3345555
No 188
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.95 E-value=1.1e+02 Score=32.74 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+.+ .+-|+.+|+++.+... .+++++.....+ .+++...++.++ +++.++...|. .+++..+++..
T Consensus 23 ll~v~g-kpli~~~l~~l~~~g~--~~iivvv~~~~~----~i~~~~~~~~~i--~~v~~~~~~G~---~~sv~~~~~~l 90 (450)
T PRK14360 23 LHPLGG-KSLVERVLDSCEELKP--DRRLVIVGHQAE----EVEQSLAHLPGL--EFVEQQPQLGT---GHAVQQLLPVL 90 (450)
T ss_pred cCEECC-hhHHHHHHHHHHhCCC--CeEEEEECCCHH----HHHHHhcccCCe--EEEEeCCcCCc---HHHHHHHHHHh
Confidence 455544 4888999999876533 355555554322 233333333333 44444444443 45555565543
Q ss_pred C--CcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 K--YELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~--~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
. .+.++++|+|. .+.++.++++++.+
T Consensus 91 ~~~~~~vlV~~~D~P~i~~~~l~~ll~~~ 119 (450)
T PRK14360 91 KGFEGDLLVLNGDVPLLRPETLEALLNTH 119 (450)
T ss_pred hccCCcEEEEeCCccccCHHHHHHHHHHH
Confidence 2 35678899998 46899999999877
No 189
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.42 E-value=81 Score=33.82 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=56.5
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+-+. +-|+.+|+++.+... -+++++.....+ .++++..+ . +.++......| -..++..+++..
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~gi--~~iivvv~~~~~----~i~~~~~~--~--~~~~~~~~~~g---~~~al~~a~~~l 89 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKAGI--DKIVTVVGHGAE----EVKEVLGD--R--SEFALQEEQLG---TGHAVMQAEEFL 89 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhCCC--CeEEEEeCCCHH----HHHHHhcC--C--cEEEEcCCCCC---HHHHHHHHHHHh
Confidence 4466664 888999999976432 355555443222 23333221 1 22334444444 456666666654
Q ss_pred C--CcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 K--YELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~--~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+ .|.++++++|. .++++.++++++..
T Consensus 90 ~~~~d~vlv~~~D~p~i~~~~l~~li~~~ 118 (458)
T PRK14354 90 ADKEGTTLVICGDTPLITAETLKNLIDFH 118 (458)
T ss_pred cccCCeEEEEECCccccCHHHHHHHHHHH
Confidence 3 47899999998 56999999999877
No 190
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=55.39 E-value=94 Score=30.99 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=51.0
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh-CCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK-YPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~-~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
++|..++.+-|+.+++++.+... --+|+++.+.. -.+.+++...+ .+.. .++..+...|. +.++..+...
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~~-~~~i~vvt~~~---~~~~v~~~l~~~~~~~--~ii~ep~~~gT---a~ai~~a~~~ 96 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLVP-PDRILVVTNEE---YRFLVREQLPEGLPEE--NIILEPEGRNT---APAIALAALY 96 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCCC-CCcEEEEechH---HHHHHHHHHhhcCCCc--eEEECCCCCCc---HHHHHHHHHH
Confidence 56777778889999999876521 23666665532 12334433333 3433 44455555553 4455555444
Q ss_pred c----CCcEEEEEcCCCCCC
Q psy11373 154 A----KYELILISDSGIRMK 169 (539)
Q Consensus 154 a----~~d~i~~lDaD~~~~ 169 (539)
. ..++++++.+|..+.
T Consensus 97 ~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 97 LAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHhcCCCCeEEEecchhccc
Confidence 3 357999999998875
No 191
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.92 E-value=81 Score=33.71 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=58.0
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|+-+. +-++.+|+++.+. . -+|+++.+... +.+++.... . +.++.++...| -..++..+....
T Consensus 22 l~~v~gk-pli~~~l~~l~~~--~-~~i~vv~~~~~----~~i~~~~~~--~--~~~~~~~~~~g---~~~ai~~a~~~l 86 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKV--A-QKVGVVLGHEA----ELVKKLLPE--W--VKIFLQEEQLG---TAHAVMCARDFI 86 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhc--C-CcEEEEeCCCH----HHHHHhccc--c--cEEEecCCCCC---hHHHHHHHHHhc
Confidence 5666554 8889999988764 2 35666654322 333333221 2 23344444445 466677776665
Q ss_pred C-CcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 K-YELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~-~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
. .|.++++++|. .+.+..++++++.+
T Consensus 87 ~~~~~vlv~~gD~p~i~~~~i~~l~~~~ 114 (448)
T PRK14357 87 EPGDDLLILYGDVPLISENTLKRLIEEH 114 (448)
T ss_pred CcCCeEEEEeCCcccCCHHHHHHHHHHH
Confidence 3 58999999998 46888899998877
No 192
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=54.09 E-value=3.2 Score=39.76 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=31.8
Q ss_pred ccccceeeEehHHHHHhCCCccc--------cccchhhhhhhh--hhhhhhhcccCCcceeccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTF--------GCYLAEERMKED--TLLDMVNHLKPGVGLVHQM 296 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~--------~~~~~ed~~~~d--i~~~~~~~~~p~~~~~~~~ 296 (539)
.++|+++++||++++++++..+. .....||.++.. ..-.|+..+.|....+|..
T Consensus 151 ~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~ 214 (235)
T cd06434 151 CLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTET 214 (235)
T ss_pred EccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEc
Confidence 36789999999999998765443 122444443321 1223444466666666653
No 193
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=53.92 E-value=2.4e+02 Score=31.93 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=48.0
Q ss_pred CeEEEEEeCCCCCCcH-HHHHHHHHhCCCceEEEEecCcccCcchhhhhH-HHHHHhcCCcEEEEEcCCCCCChHHHHHH
Q psy11373 99 KYEICFCLEDDVDPAV-PLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNM-EPGYKAAKYELILISDSGIRMKEDTLLDM 176 (539)
Q Consensus 99 ~~eIIvvdd~s~D~t~-~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al-~~g~~~a~~d~i~~lDaD~~~~p~~L~~l 176 (539)
+..+.|+...+.|+.. +.+++-.+.|.++-..=+. +......-|.-.+ ..+....+.+|++-+|+|+.+..+-|-+.
T Consensus 418 ~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~-DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~ 496 (636)
T PLN03133 418 AVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFV-DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (636)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeee-chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHH
Confidence 3566677766655543 3454445667664111111 2222222344322 23333348899999999999987766666
Q ss_pred HHhhCCCeeEEEe
Q psy11373 177 VNHLKPGVGLVHQ 189 (539)
Q Consensus 177 v~~~~~~vg~V~g 189 (539)
+...++.-++..|
T Consensus 497 L~~~~~~~~Ly~G 509 (636)
T PLN03133 497 LKRTNVSHGLLYG 509 (636)
T ss_pred HHhcCCCCceEEE
Confidence 5543323234444
No 194
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=53.75 E-value=43 Score=28.11 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCCCeEEEEE-eCCCCCCcHHHHHHHHHhCCCc
Q psy11373 85 LYSNLETFFTMSYPKYEICFC-LEDDVDPAVPLVEKLCKKYPNV 127 (539)
Q Consensus 85 l~~~L~Sl~~q~yp~~eIIvv-dd~s~D~t~~il~~l~~~~p~~ 127 (539)
=.+.|+.+++ +||+.+.|+| |++-.| .++-.++++++|+.
T Consensus 51 K~~~i~~i~~-~fP~~kfiLIGDsgq~D--peiY~~ia~~~P~~ 91 (100)
T PF09949_consen 51 KRDNIERILR-DFPERKFILIGDSGQHD--PEIYAEIARRFPGR 91 (100)
T ss_pred HHHHHHHHHH-HCCCCcEEEEeeCCCcC--HHHHHHHHHHCCCC
Confidence 3566777764 7998665555 555555 67777888899984
No 195
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=53.51 E-value=2.2e+02 Score=31.24 Aligned_cols=115 Identities=15% Similarity=0.256 Sum_probs=67.7
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCC---CceEEEEecCcccCc--ch
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYP---NVDTSVFIGGQVVGV--NP 142 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p---~~~~~~~~~~~~~g~--~~ 142 (539)
..++|.|++=+|-.+ -+++.++.+.+... ++++++-.+...+ .+.+++..++.+ +++++++ +|.|. .|
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~~p~-~~Dl~ITt~~~~~--~~~i~~~l~~~~~~~~~~v~vv---~NrGRDi~p 335 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLANIPF-PYDLFITTDSEEK--KEEIEEILAKRPGFKNAEVRVV---ENRGRDILP 335 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHhCCC-CeEEEEECCchhh--HHHHHHHHHhccCCCceEEEEe---CCCCccHHH
Confidence 456889998888765 56778887765422 5888887554333 345555444444 3444433 33332 12
Q ss_pred hhhhHHHHHHhcCCcEEEEEcCCCCCC--------------------hHHHHHHHHhh--CCCeeEEEe
Q psy11373 143 KINNMEPGYKAAKYELILISDSGIRMK--------------------EDTLLDMVNHL--KPGVGLVHQ 189 (539)
Q Consensus 143 K~~al~~g~~~a~~d~i~~lDaD~~~~--------------------p~~L~~lv~~~--~~~vg~V~g 189 (539)
---.+...+...++|+|+-+.+--.+. ++..+++++.| +|++|+|..
T Consensus 336 fLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P 404 (498)
T PF05045_consen 336 FLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIP 404 (498)
T ss_pred HHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeC
Confidence 222223333336899999987655443 23355566667 788999987
No 196
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=53.24 E-value=46 Score=34.14 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=29.8
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
-.|.|...++.++++++|.|..+.++.-+.+.+..
T Consensus 118 LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~ 152 (317)
T PF13896_consen 118 LRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFA 152 (317)
T ss_pred HHHHHHHhcCcceEEEecceeeeCcchHHHHHHHh
Confidence 34778889999999999999999999877776655
No 197
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=52.26 E-value=1.2e+02 Score=32.38 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=53.9
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc---CC
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA---KY 156 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a---~~ 156 (539)
++.+.++..++++.+.. .-+++++..... +.+++.. +...++++.++...|. .+++..+++.. +.
T Consensus 31 ~gkpli~~~l~~l~~~~--~~~iivv~~~~~----~~i~~~~---~~~~~~~v~~~~~~Gt---~~al~~a~~~l~~~~~ 98 (456)
T PRK14356 31 LGEPMLRFVYRALRPLF--GDNVWTVVGHRA----DMVRAAF---PDEDARFVLQEQQLGT---GHALQCAWPSLTAAGL 98 (456)
T ss_pred CCCcHHHHHHHHHHhcC--CCcEEEEECCCH----HHHHHhc---cccCceEEEcCCCCCc---HHHHHHHHHHHhhcCC
Confidence 34677888888886542 235666654332 2233322 2222344454554553 34555554433 46
Q ss_pred cEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 157 ELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 157 d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
|.++++++|. .++++.++++++..
T Consensus 99 d~vlv~~gD~P~i~~~~i~~li~~~ 123 (456)
T PRK14356 99 DRVLVVNGDTPLVTTDTIDDFLKEA 123 (456)
T ss_pred CcEEEEeCCcccCCHHHHHHHHHHH
Confidence 8999999999 57999999999876
No 198
>PLN02917 CMP-KDO synthetase
Probab=51.43 E-value=2.3e+02 Score=28.55 Aligned_cols=98 Identities=12% Similarity=0.186 Sum_probs=54.5
Q ss_pred cEEEEEecCCCh--------------hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc
Q psy11373 71 GVTILKPLTGTD--------------PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ 136 (539)
Q Consensus 71 ~VSIIIP~~ne~--------------~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~ 136 (539)
++.+|||+.++. +-+...++.+.+... ..+|+++.| ++ ++ ++...++ ++.+ +...+.
T Consensus 47 ~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a~~~~~-~~~VVV~~~--~e---~I-~~~~~~~-~v~v-i~~~~~ 117 (293)
T PLN02917 47 RVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERAKLATT-LDHIVVATD--DE---RI-AECCRGF-GADV-IMTSES 117 (293)
T ss_pred cEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHHHcCCC-CCEEEEECC--hH---HH-HHHHHHc-CCEE-EeCCcc
Confidence 467778776544 345667777765432 223444422 22 22 2232332 2322 122222
Q ss_pred ccCcchhhhhHHHHHHhc--CCcEEEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 137 VVGVNPKINNMEPGYKAA--KYELILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 137 ~~g~~~K~~al~~g~~~a--~~d~i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
..+. -.++ ..+++.. +.|+++++++|.-+ +++.++++++.+
T Consensus 118 ~~~G--T~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~ 161 (293)
T PLN02917 118 CRNG--TERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 161 (293)
T ss_pred cCCc--hHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHH
Confidence 2222 2222 3455544 46899999999985 999999999987
No 199
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=50.79 E-value=77 Score=30.72 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=54.9
Q ss_pred EEEEEecCC-ChhhHHHHHHHHHcCCCCC-eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCccc--CcchhhhhH
Q psy11373 72 VTILKPLTG-TDPNLYSNLETFFTMSYPK-YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVV--GVNPKINNM 147 (539)
Q Consensus 72 VSIIIP~~n-e~~~l~~~L~Sl~~q~yp~-~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~--g~~~K~~al 147 (539)
++-+|-+++ ..+.++..++.+- .|+ .=.|-+|-.+++...+.++++.+.++++.+ +...... |.-....|.
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~--v~~r~~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF--VPKRVDVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE---SS-----TTSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCCEEEEEEcCCCChHHHHHHHHhcccCCceee--cccccccccCCccHHHHH
Confidence 355777766 5566666666663 344 445666666666666767777677887622 2212211 222233333
Q ss_pred ----HHHHH-hcCCcEEEEEcCCCCC--ChHHHHHHHHhhCCCeeEEEe
Q psy11373 148 ----EPGYK-AAKYELILISDSGIRM--KEDTLLDMVNHLKPGVGLVHQ 189 (539)
Q Consensus 148 ----~~g~~-~a~~d~i~~lDaD~~~--~p~~L~~lv~~~~~~vg~V~g 189 (539)
..+++ ..+.||++++-.++.+ +.+.+.+..+..+.+..++.+
T Consensus 76 l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~ 124 (244)
T PF02485_consen 76 LNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIES 124 (244)
T ss_dssp HHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---B
T ss_pred HHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceec
Confidence 33444 2478888888888775 777787777764233344433
No 200
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=50.45 E-value=1.3e+02 Score=30.30 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=56.6
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh--CCCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK--YPNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~--~p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
-++|++|. +.|...|+.+..... -+|+++..... .+.++++..+ .-++++....++++.| -++++..+.
T Consensus 23 ~Llpv~gk-PmI~~~L~~l~~aGi--~~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~G---ta~al~~a~ 93 (286)
T TIGR01207 23 QLLPIYDK-PMIYYPLSTLMLAGI--RDILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPDG---LAQAFIIGE 93 (286)
T ss_pred eeeEECCE-EhHHHHHHHHHHCCC--CEEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCCC---HHHHHHHHH
Confidence 37788886 888999999887533 35655542221 1223333222 1234455555556666 477777777
Q ss_pred HhcC-CcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 152 KAAK-YELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 152 ~~a~-~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
.... .++++++ +|..+.+.-+..+++..
T Consensus 94 ~~l~~~~~~li~-gD~i~~~~~l~~ll~~~ 122 (286)
T TIGR01207 94 DFIGGDPSALVL-GDNIFYGHDLSDLLKRA 122 (286)
T ss_pred HHhCCCCEEEEE-CCEeccccCHHHHHHHH
Confidence 7654 4566554 77665555667776654
No 201
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=49.35 E-value=2.1e+02 Score=31.01 Aligned_cols=95 Identities=14% Similarity=0.212 Sum_probs=57.9
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|..+ .+.|+..|+++.+... -+++++.....+ ++.+.+....+. +.++..+...| -..++..+++..
T Consensus 26 llpi~g-kpli~~~l~~l~~~g~--~~iivvv~~~~~---~i~~~~~~~~~~--~~~~~~~~~~G---t~~si~~al~~l 94 (482)
T PRK14352 26 LHTLAG-RSMLGHVLHAAAGLAP--QHLVVVVGHDRE---RVAPAVAELAPE--VDIAVQDEQPG---TGHAVQCALEAL 94 (482)
T ss_pred eceeCC-ccHHHHHHHHHHhcCC--CcEEEEECCCHH---HHHHHhhccCCc--cEEEeCCCCCC---cHHHHHHHHHHh
Confidence 456554 5588999999876532 356555543322 222222221122 23345555555 355677777664
Q ss_pred C---CcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 K---YELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~---~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+ .+.++++++|. .++++.++++++.+
T Consensus 95 ~~~~~~~vlV~~gD~P~~~~~~l~~li~~~ 124 (482)
T PRK14352 95 PADFDGTVVVTAGDVPLLDGETLADLVATH 124 (482)
T ss_pred ccCCCCeEEEEeCCeeccCHHHHHHHHHHH
Confidence 3 47889999999 56899999999876
No 202
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=49.04 E-value=1.2e+02 Score=33.05 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=56.3
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|.-| .+.|...|+++.+... -+|+++..... +.+++..... .+.++.++...| .++++..+++..
T Consensus 29 llpi~g-kpli~~~l~~l~~~gi--~~ivvv~~~~~----~~i~~~~~~~---~i~~v~~~~~~G---t~~al~~~~~~l 95 (481)
T PRK14358 29 LHPVAG-RPMVAWAVKAARDLGA--RKIVVVTGHGA----EQVEAALQGS---GVAFARQEQQLG---TGDAFLSGASAL 95 (481)
T ss_pred ecEECC-eeHHHHHHHHHHhCCC--CeEEEEeCCCH----HHHHHHhccC---CcEEecCCCcCC---cHHHHHHHHHHh
Confidence 455555 4788999999876532 46666665422 2233332222 234444444445 466666666654
Q ss_pred ---CCcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 ---KYELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ---~~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+.+ ++++++|. .+.+..++++++..
T Consensus 96 ~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~ 124 (481)
T PRK14358 96 TEGDAD-ILVLYGDTPLLRPDTLRALVADH 124 (481)
T ss_pred hCCCCc-EEEEeCCeeccCHHHHHHHHHHH
Confidence 235 67799999 56899999998877
No 203
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=48.84 E-value=3.6e+02 Score=28.69 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=49.1
Q ss_pred CeEEEEEeCCCCC--CcH-HHHHHHHHhCCCceEEEE-ecCcccCcchhhhh-HHHHHHhcCCcEEEEEcCCCCCChHHH
Q psy11373 99 KYEICFCLEDDVD--PAV-PLVEKLCKKYPNVDTSVF-IGGQVVGVNPKINN-MEPGYKAAKYELILISDSGIRMKEDTL 173 (539)
Q Consensus 99 ~~eIIvvdd~s~D--~t~-~il~~l~~~~p~~~~~~~-~~~~~~g~~~K~~a-l~~g~~~a~~d~i~~lDaD~~~~p~~L 173 (539)
...+.|+...+.+ +.. ..+++-.++|.++ .+. ..+.......|.-. +..+.+..+.+|++=.|+|+.+..+-|
T Consensus 177 gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDI--L~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L 254 (408)
T PLN03193 177 GIIIRFVIGHSATSGGILDRAIEAEDRKHGDF--LRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATL 254 (408)
T ss_pred cEEEEEEeecCCCcchHHHHHHHHHHHHhCCE--EEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHH
Confidence 4788888888763 233 3444445566654 111 22222233345443 334445558999999999999998888
Q ss_pred HHHHHhh
Q psy11373 174 LDMVNHL 180 (539)
Q Consensus 174 ~~lv~~~ 180 (539)
-..++.-
T Consensus 255 ~~~L~~~ 261 (408)
T PLN03193 255 GETLVRH 261 (408)
T ss_pred HHHHHhc
Confidence 7777654
No 204
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=48.47 E-value=66 Score=30.34 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=55.3
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-cccCcchhhhhHHHHHHhcCCcE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-QVVGVNPKINNMEPGYKAAKYEL 158 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-~~~g~~~K~~al~~g~~~a~~d~ 158 (539)
++.+.++.+++.+... . -+|+++.... +..+.+.. .++ +++.+. ...| -..++..|++..+.|+
T Consensus 31 ~g~~ll~~~i~~l~~~-~--~~ivvv~~~~-----~~~~~~~~--~~~--~~i~~~~~~~G---~~~si~~~l~~~~~~~ 95 (200)
T PRK02726 31 QGVPLLQRVARIAAAC-A--DEVYIITPWP-----ERYQSLLP--PGC--HWLREPPPSQG---PLVAFAQGLPQIKTEW 95 (200)
T ss_pred CCEeHHHHHHHHHHhh-C--CEEEEECCCH-----HHHHhhcc--CCC--eEecCCCCCCC---hHHHHHHHHHhCCCCc
Confidence 4567788888888643 1 3555554321 22222211 123 333322 2234 3577888998888899
Q ss_pred EEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 159 ILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 159 i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
++++++|.-. +++.++++++..
T Consensus 96 vlv~~~D~P~i~~~~i~~l~~~~ 118 (200)
T PRK02726 96 VLLLACDLPRLTVDVLQEWLQQL 118 (200)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHh
Confidence 9999999975 999999999887
No 205
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=48.04 E-value=52 Score=31.88 Aligned_cols=100 Identities=22% Similarity=0.391 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHcCCCCC-eEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc--CC
Q psy11373 80 GTDPNLYSNLETFFTMSYPK-YEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA--KY 156 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~-~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a--~~ 156 (539)
+..+.+..+|+.+.+. |. -+|+++....+ .+.++++..+ .. +.++.++.. ......+|++.. ..
T Consensus 26 ~Gkpvl~~tl~~f~~~--~~i~~Ivvv~~~~~---~~~~~~~~~~-~~--v~iv~GG~t-----R~~SV~ngL~~l~~~~ 92 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLAS--PEIDEIVVVVPPED---IDYVEELLSK-KK--VKIVEGGAT-----RQESVYNGLKALAEDC 92 (221)
T ss_dssp TTEEHHHHHHHHHHTT--TTESEEEEEESGGG---HHHHHHHHHH-TT--EEEEE--SS-----HHHHHHHHHHCHHCTS
T ss_pred CCeEeHHHHHHHHhcC--CCCCeEEEEecchh---HHHHHHhhcC-CC--EEEecCChh-----HHHHHHHHHHHHHcCC
Confidence 5667889999999764 44 45666654332 3344555444 33 344444332 223345566653 34
Q ss_pred cEEEEEcCCCC-CChHHHHHHHHhhCC-CeeEEEeece
Q psy11373 157 ELILISDSGIR-MKEDTLLDMVNHLKP-GVGLVHQMPF 192 (539)
Q Consensus 157 d~i~~lDaD~~-~~p~~L~~lv~~~~~-~vg~V~g~~~ 192 (539)
|++++.|+=-- ++++.++++++..+. .-+++.+.|.
T Consensus 93 d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~ 130 (221)
T PF01128_consen 93 DIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPV 130 (221)
T ss_dssp SEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-
T ss_pred CEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEec
Confidence 79999998775 499999999999843 3345555443
No 206
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=47.19 E-value=1.6e+02 Score=28.94 Aligned_cols=100 Identities=9% Similarity=0.032 Sum_probs=58.8
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHH---H---HHhC-------------CCceEEEEecC
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEK---L---CKKY-------------PNVDTSVFIGG 135 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~---l---~~~~-------------p~~~~~~~~~~ 135 (539)
++|+.+. +-|...|+++.+... -+|+++.....+...+.+.+ + ..+. +...+.++..+
T Consensus 25 llpv~gk-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAAGI--EDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQK 101 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHCCC--CEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEcC
Confidence 5676665 888999999887533 35666666533322221210 0 0010 13344444555
Q ss_pred cccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCCh-H-HHHHHHHhh
Q psy11373 136 QVVGVNPKINNMEPGYKAAKYELILISDSGIRMKE-D-TLLDMVNHL 180 (539)
Q Consensus 136 ~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p-~-~L~~lv~~~ 180 (539)
...| -+.++..+....+.+-++++.+|..... + .++++++..
T Consensus 102 ~~~G---t~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~ 145 (267)
T cd02541 102 EPLG---LGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAY 145 (267)
T ss_pred CCCC---hHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHH
Confidence 5556 4677777777766566777788887754 3 688888876
No 207
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=46.10 E-value=2.2e+02 Score=28.80 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=57.6
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh--CCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK--YPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~--~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
++|++|. +.|...|+++.+... -+|+++..... .+.++++..+ .-.+++....++++.| -++++..+..
T Consensus 28 Llpv~gk-PmI~~~l~~l~~aGi--~~I~ii~~~~~---~~~~~~~l~~g~~~g~~i~y~~q~~~~G---ta~Al~~a~~ 98 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLAGI--RDILIISTPQD---TPRFQQLLGDGSQWGLNLQYKVQPSPDG---LAQAFIIGEE 98 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHCCC--CEEEEEecCCc---hHHHHHHHcCccccCceeEEEECCCCCC---HHHHHHHHHH
Confidence 7888887 888999999987532 46665554322 1223343222 1234455556666666 5777777776
Q ss_pred hcC-CcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 153 AAK-YELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 153 ~a~-~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
... .++++++ +|..+...-+..+++..
T Consensus 99 ~i~~~~~~lv~-gD~i~~~~~l~~ll~~~ 126 (292)
T PRK15480 99 FIGGDDCALVL-GDNIFYGHDLPKLMEAA 126 (292)
T ss_pred HhCCCCEEEEE-CCeeeeccCHHHHHHHH
Confidence 653 4666655 66555444577777755
No 208
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=46.01 E-value=13 Score=35.32 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=21.6
Q ss_pred eeeEehHHHHHhCCCccccccchhhhhh
Q psy11373 248 STLTRKSIFDELGGIKTFGCYLAEERMK 275 (539)
Q Consensus 248 ~~~~rr~~~~~vGgf~~~~~~~~ed~~~ 275 (539)
.+++||+.++++|||++....+.||+++
T Consensus 160 ~~~~rr~~~~~~g~f~~~~~~~~eD~~l 187 (219)
T cd06913 160 TWFCSREWFSHVGPFDEGGKGVPEDLLF 187 (219)
T ss_pred cceeehhHHhhcCCccchhccchhHHHH
Confidence 3579999999999998765555677644
No 209
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=45.94 E-value=1.9e+02 Score=30.30 Aligned_cols=95 Identities=14% Similarity=0.265 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELI 159 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i 159 (539)
++.+.++..++.+... --+|+++..+.. +..++ ..+++. ++.. ...|..+-...+..|++..+.|++
T Consensus 30 ~Gkpll~~~i~~l~~~---~~~iivvv~~~~----~~~~~---~~~~~~--~i~d-~~~g~~G~~~si~~gl~~~~~~~v 96 (366)
T PRK14489 30 GGKPLIERVVDRLRPQ---FARIHLNINRDP----ARYQD---LFPGLP--VYPD-ILPGFQGPLSGILAGLEHADSEYL 96 (366)
T ss_pred CCeeHHHHHHHHHHhh---CCEEEEEcCCCH----HHHHh---hccCCc--EEec-CCCCCCChHHHHHHHHHhcCCCcE
Confidence 5667788888888642 135555443321 11222 122222 2222 222212245677888888888999
Q ss_pred EEEcCCCC-CChHHHHHHHHhh-CCCeeEE
Q psy11373 160 LISDSGIR-MKEDTLLDMVNHL-KPGVGLV 187 (539)
Q Consensus 160 ~~lDaD~~-~~p~~L~~lv~~~-~~~vg~V 187 (539)
+++++|.- ++++.++++++.+ +.+..++
T Consensus 97 lv~~~D~P~i~~~~i~~L~~~~~~~~~~~v 126 (366)
T PRK14489 97 FVVACDTPFLPENLVKRLSKALAIEGADIA 126 (366)
T ss_pred EEeeCCcCCCCHHHHHHHHHHhhccCCeEE
Confidence 99999975 5999999999976 3333333
No 210
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=45.84 E-value=1.1e+02 Score=28.79 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc-CCcE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA-KYEL 158 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a-~~d~ 158 (539)
++.+-++.+++.+.+... --+|+++.+... .+.+++....... +.++.++. + ....+..|++.. +.|+
T Consensus 25 ~gkpll~~~l~~l~~~~~-~~~ivVv~~~~~---~~~~~~~~~~~~~--~~~~~~~~--~---~~~sl~~~l~~~~~~d~ 93 (217)
T TIGR00453 25 GGRPLLEHTLDAFLAHPA-IDEVVVVVSPED---QEFFQKYLVARAV--PKIVAGGD--T---RQDSVRNGLKALKDAEW 93 (217)
T ss_pred CCeEHHHHHHHHHhcCCC-CCEEEEEEChHH---HHHHHHHhhcCCc--EEEeCCCc--h---HHHHHHHHHHhCCCCCE
Confidence 456788999999876422 135666654321 1222222221111 22222211 1 245677788776 7899
Q ss_pred EEEEcCCCC-CChHHHHHHHHhh
Q psy11373 159 ILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 159 i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
++++|+|.- ++++.++++++.+
T Consensus 94 vlv~~~D~P~i~~~~i~~li~~~ 116 (217)
T TIGR00453 94 VLVHDAARPFVPKELLDRLLEAL 116 (217)
T ss_pred EEEccCccCCCCHHHHHHHHHHH
Confidence 999999996 5999999999987
No 211
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=45.42 E-value=10 Score=35.10 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=24.1
Q ss_pred ccccceeeEehHHHHHhCCCccccccchhhhhh
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAEERMK 275 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~ 275 (539)
+..++++++||++++++|||++. ...||+.+
T Consensus 149 ~~~~~~~~~rr~~~~~~g~~~~~--~~~eD~~~ 179 (201)
T cd04195 149 PFNHPTVMFRKSKVLAVGGYQDL--PLVEDYAL 179 (201)
T ss_pred CCCChHHhhhHHHHHHcCCcCCC--CCchHHHH
Confidence 35567889999999999999875 55677633
No 212
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=45.33 E-value=93 Score=29.33 Aligned_cols=94 Identities=11% Similarity=0.159 Sum_probs=51.5
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhC--CCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKY--PNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~--p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
++|+.|. +.+..+|+++.+.... +|+++.+.. .+.++++..+. ...++.++..+...|. ++++..+ +
T Consensus 23 ll~~~g~-pli~~~l~~l~~~~~~--~iivv~~~~----~~~i~~~~~~~~~~~~~i~~~~~~~~~g~---~~~l~~~-~ 91 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIAQGFR--NFYISVNYL----AEMIEDYFGDGSKFGVNISYVREDKPLGT---AGALSLL-P 91 (220)
T ss_pred cCeECCc-chHHHHHHHHHHCCCc--EEEEECccC----HHHHHHHHCCccccCccEEEEECCCCCcc---hHHHHHH-H
Confidence 4555554 7889999999875332 566665432 22333332221 1233433333344442 4444333 3
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
....+.++++.+|...+. .+..+++.+
T Consensus 92 ~~~~~~~lv~~~D~i~~~-~~~~l~~~~ 118 (220)
T cd06426 92 EKPTDPFLVMNGDILTNL-NYEHLLDFH 118 (220)
T ss_pred hhCCCCEEEEcCCEeecc-CHHHHHHHH
Confidence 333677888899986554 466777766
No 213
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.33 E-value=18 Score=31.88 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=32.9
Q ss_pred cccceeeEehHHHHHhCCCccccccchhhhhhhh--hhhhhhhcccCCcceecc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFGCYLAEERMKED--TLLDMVNHLKPGVGLVHQ 295 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~d--i~~~~~~~~~p~~~~~~~ 295 (539)
..|++++++|++++++|||+.......||..+.- ....++....|+..+.|.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 6889999999999999999876554445543321 112222235566555553
No 214
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=44.54 E-value=2.4e+02 Score=26.62 Aligned_cols=95 Identities=13% Similarity=0.269 Sum_probs=54.0
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCC-----CceEEEEecCcccCcchhhhhHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYP-----NVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p-----~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
++|+-|. +-|..+|+.+.+.. --+|+++.... ..+.+++..++++ ...+.........| -++++..
T Consensus 25 Llpv~g~-pli~~~l~~l~~~g--~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~g---t~~al~~ 95 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKAG--FEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMG---TADSLRH 95 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHCC--CCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcC---hHHHHHH
Confidence 5666664 78899999987642 24666666432 1233444433331 12222223344445 4677777
Q ss_pred HHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 150 g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
+....+.+ ++++.+|...+ .-+..+++.+
T Consensus 96 ~~~~i~~d-~lv~~~D~i~~-~~l~~~l~~h 124 (214)
T cd04198 96 IRKKIKKD-FLVLSCDLITD-LPLIELVDLH 124 (214)
T ss_pred HHhhcCCC-EEEEeCccccc-cCHHHHHHHH
Confidence 77665555 67788996544 4466777665
No 215
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=44.27 E-value=2.7e+02 Score=28.77 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=67.9
Q ss_pred CcEEEEEec-CCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEE-ecCc-ccCc-chhh
Q psy11373 70 PGVTILKPL-TGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVF-IGGQ-VVGV-NPKI 144 (539)
Q Consensus 70 p~VSIIIP~-~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~-~~~~-~~g~-~~K~ 144 (539)
..+.|+..+ .|=.+.+.-+|.|++..+-. .+.+.|++|+-+++..+.++++.++++. .+.+. +..+ ..+. ..+.
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~-~i~~~~id~~~~~~~~~~~~ 102 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNT-RINIYLINCERLKSLPSTKN 102 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCC-eEEEEEeCHHHHhCCcccCc
Confidence 457888777 34456789999999854322 4889999998888888888888777643 33333 2211 1110 0011
Q ss_pred hhHHHHHH-----h--cCCcEEEEEcCCCCCChHHHHHHHHh-hC-CCeeEE
Q psy11373 145 NNMEPGYK-----A--AKYELILISDSGIRMKEDTLLDMVNH-LK-PGVGLV 187 (539)
Q Consensus 145 ~al~~g~~-----~--a~~d~i~~lDaD~~~~p~~L~~lv~~-~~-~~vg~V 187 (539)
.....-++ . .+.|-++.+|+|+++..+ |.++... ++ ..+++|
T Consensus 103 ~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~~~dl~~~~~aav 153 (334)
T PRK15171 103 WTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELIDLDFAENEIAAV 153 (334)
T ss_pred CCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHHhccCCCCeEEEE
Confidence 11111111 1 158999999999998654 3444332 33 334444
No 216
>PHA01631 hypothetical protein
Probab=43.63 E-value=32 Score=31.49 Aligned_cols=68 Identities=9% Similarity=0.002 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH---hcCCcEEEEEcCCCCCChH
Q psy11373 99 KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK---AAKYELILISDSGIRMKED 171 (539)
Q Consensus 99 ~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~---~a~~d~i~~lDaD~~~~p~ 171 (539)
++..++|||.-.|-|.-.++ ...+++ .....+.....-+=+..|...+. ....|+++++|||..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~---~~~~~I--i~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIP---KYQEKI--IWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccc---ccCCce--EEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 57899999987775544222 223433 22211111111113445555544 3578999999999998764
No 217
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=43.33 E-value=1.6e+02 Score=28.69 Aligned_cols=100 Identities=9% Similarity=-0.006 Sum_probs=54.9
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHH-------------------HHHHhCCCceEEEEecC
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVE-------------------KLCKKYPNVDTSVFIGG 135 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~-------------------~l~~~~p~~~~~~~~~~ 135 (539)
++|+-+. +-|...|+++.+... -+|+++.....+...+.+. +...-.+..++......
T Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T TIGR01099 25 MLPIVDK-PLIQYVVEEAVEAGI--EDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVRQK 101 (260)
T ss_pred eEEECCE-EHHHHHHHHHHhCCC--CEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEecC
Confidence 5666665 788889998876432 3666666544322111111 00000112233333344
Q ss_pred cccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChH--HHHHHHHhh
Q psy11373 136 QVVGVNPKINNMEPGYKAAKYELILISDSGIRMKED--TLLDMVNHL 180 (539)
Q Consensus 136 ~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~--~L~~lv~~~ 180 (539)
...| -++++..+......+-++++.+|...... .+.++++..
T Consensus 102 ~~~G---~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~ 145 (260)
T TIGR01099 102 EQKG---LGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLY 145 (260)
T ss_pred CCCC---HHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHH
Confidence 4455 46677777666544556777788776543 778888876
No 218
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=43.11 E-value=1.7e+02 Score=30.53 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNH 179 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~ 179 (539)
..+|++++.|.|-++.|+.|+.+-..
T Consensus 177 ~~dDliivSDvDEIP~p~~l~~Lr~c 202 (356)
T PF04724_consen 177 QDDDLIIVSDVDEIPSPETLKFLRWC 202 (356)
T ss_pred CCCCEEEEcCcccccCHHHHHHHHhc
Confidence 48999999999999999999988543
No 219
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=42.43 E-value=1.4e+02 Score=29.51 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc--CCcEE
Q psy11373 82 DPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA--KYELI 159 (539)
Q Consensus 82 ~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a--~~d~i 159 (539)
.+.+..+++.+.+... --+|++|..... .+.+++...+++ ..+.++.++. + ....+..|++.. +.+++
T Consensus 52 kpll~~tl~~~~~~~~-i~~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v~gg~--~---r~~SV~~gl~~l~~~~~~V 121 (252)
T PLN02728 52 QPIALYSLYTFARMPE-VKEIVVVCDPSY---RDVFEEAVENID-VPLKFALPGK--E---RQDSVFNGLQEVDANSELV 121 (252)
T ss_pred eEHHHHHHHHHHhCCC-CCeEEEEeCHHH---HHHHHHHHHhcC-CceEEcCCCC--c---hHHHHHHHHHhccCCCCEE
Confidence 4566788888865321 135666654322 233333333333 2233222221 1 234466777764 56899
Q ss_pred EEEcCCCC-CChHHHHHHHHhhCCCeeEEEeec
Q psy11373 160 LISDSGIR-MKEDTLLDMVNHLKPGVGLVHQMP 191 (539)
Q Consensus 160 ~~lDaD~~-~~p~~L~~lv~~~~~~vg~V~g~~ 191 (539)
++.|+|-- ++++.++++++.....-+++.+.+
T Consensus 122 lihDaarP~vs~~~i~~li~~~~~~ga~i~~~~ 154 (252)
T PLN02728 122 CIHDSARPLVTSADIEKVLKDAAVHGAAVLGVP 154 (252)
T ss_pred EEecCcCCCCCHHHHHHHHHHHhhCCeEEEeec
Confidence 99998765 499999999988732223455433
No 220
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=42.25 E-value=1.9e+02 Score=28.44 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=58.0
Q ss_pred EEEEE-ecCC-Chh--hHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC-----c-----c
Q psy11373 72 VTILK-PLTG-TDP--NLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG-----Q-----V 137 (539)
Q Consensus 72 VSIII-P~~n-e~~--~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~-----~-----~ 137 (539)
++|++ |.+. |++ .+.+-|+....+ .--.+.+=+.+++++..++++.+.+. ..+ ++..-+ . .
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~--G~~~~~~Y~~~~~~~~~~vL~~Y~~~-g~v--~~~~w~~~~~~~~~~~~~ 77 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLL--GVDHFYFYDNSSSPSVRKVLKEYERS-GYV--EVIPWPLRPKFPDFPSPF 77 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHh--CCCEEEEEEccCCHHHHHhHHHHhhc-CeE--EEEEcccccccCCcccch
Confidence 55665 6766 544 567777665554 22456666667888889999887654 333 333221 0 0
Q ss_pred cCcc------hhhhhHHHHHHhc--CCcEEEEEcCCCCCChH----HHHHHHHhh
Q psy11373 138 VGVN------PKINNMEPGYKAA--KYELILISDSGIRMKED----TLLDMVNHL 180 (539)
Q Consensus 138 ~g~~------~K~~al~~g~~~a--~~d~i~~lDaD~~~~p~----~L~~lv~~~ 180 (539)
...+ +...+.+.-+... ..+|++++|-|-.+-|. +.+.+...+
T Consensus 78 ~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l 132 (285)
T PF01697_consen 78 PDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLL 132 (285)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHH
Confidence 1111 1123334444333 67899999999987333 244444444
No 221
>KOG2287|consensus
Probab=41.48 E-value=4.3e+02 Score=27.46 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=67.7
Q ss_pred CcEEEEEecCCChhhHHHHHHH-HHcCCC---CCeEEEEEeCCCCCCc--HHHHHHHHHhCCCceEEEEecCcccCcchh
Q psy11373 70 PGVTILKPLTGTDPNLYSNLET-FFTMSY---PKYEICFCLEDDVDPA--VPLVEKLCKKYPNVDTSVFIGGQVVGVNPK 143 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~S-l~~q~y---p~~eIIvvdd~s~D~t--~~il~~l~~~~p~~~~~~~~~~~~~g~~~K 143 (539)
|.+-++|...-+.-.-++.++. -.++.. -+..+++...-..++. ...+.+-.+.|.++-.. -..+...-..-|
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~-df~Dty~nltlK 173 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQV-DFEDTYFNLTLK 173 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEE-ecccchhchHHH
Confidence 4566666666655555666643 333332 2367777776655543 23333334556654111 112222233335
Q ss_pred hhh-HHHHHHhc-CCcEEEEEcCCCCCChHHHHHHHHhh-CCCeeEEEe
Q psy11373 144 INN-MEPGYKAA-KYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 144 ~~a-l~~g~~~a-~~d~i~~lDaD~~~~p~~L~~lv~~~-~~~vg~V~g 189 (539)
.-+ +..+...+ .+++|+=+|+|+.+.++-|-+.+... ++.-....|
T Consensus 174 tl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G 222 (349)
T KOG2287|consen 174 TLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYG 222 (349)
T ss_pred HHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEE
Confidence 433 33344433 69999999999999998888888776 566666666
No 222
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=41.23 E-value=1.6e+02 Score=28.11 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=51.2
Q ss_pred CChhhHHHHHHHHH---cCCCCCeEEEEEeCCCCCCcHHHHHHHHH-hCCCceEEEE-ecCcccCcchhhhhHHHHHHhc
Q psy11373 80 GTDPNLYSNLETFF---TMSYPKYEICFCLEDDVDPAVPLVEKLCK-KYPNVDTSVF-IGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 80 ne~~~l~~~L~Sl~---~q~yp~~eIIvvdd~s~D~t~~il~~l~~-~~p~~~~~~~-~~~~~~g~~~K~~al~~g~~~a 154 (539)
|+.+.+++.++... ..+.| .-|+++.|+..++..++-+.+.+ ....+....+ +++.+.|.=.|-..| .|-..-
T Consensus 84 ~y~~vm~~v~~~y~~~~~~~~P-~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~l-~gR~vD 161 (200)
T PF10138_consen 84 NYAPVMEDVLDHYFKREPSDAP-ALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDDL-AGRVVD 161 (200)
T ss_pred chHHHHHHHHHHHhhcCCCCCC-eEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhcc-CCcccC
Confidence 55567788887776 23345 45777777766554443333321 2233334444 444455543333332 121122
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 155 KYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 155 ~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
+..++.+=|-|..-+..--++|++.|
T Consensus 162 Na~Ff~~~d~~~lsD~eLy~~LL~Ef 187 (200)
T PF10138_consen 162 NAGFFAIDDIDELSDEELYDRLLAEF 187 (200)
T ss_pred CcCeEecCCcccCCHHHHHHHHHHHH
Confidence 55666665666444666666666655
No 223
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=41.11 E-value=2.2e+02 Score=26.51 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=55.2
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc-CCcE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA-KYEL 158 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a-~~d~ 158 (539)
++.+-|...++++.+... -+|+++.+..++.+.+.+++ ... . +......| -...+..|++.. ..+.
T Consensus 25 ~GkplI~~vi~~l~~~~i--~~I~Vv~~~~~~~~~~~l~~---~~~----~-~~~~~g~G---~~~~l~~al~~~~~~~~ 91 (183)
T TIGR00454 25 CGRCLIDHVLSPLLKSKV--NNIIIATSPHTPKTEEYINS---AYK----D-YKNASGKG---YIEDLNECIGELYFSEP 91 (183)
T ss_pred CCEEHHHHHHHHHHhCCC--CEEEEEeCCCHHHHHHHHhh---cCc----E-EEecCCCC---HHHHHHHHhhcccCCCC
Confidence 456788889998875432 35666655444433333321 111 1 22233344 356777777743 3677
Q ss_pred EEEEcCCCC-CChHHHHHHHHhh
Q psy11373 159 ILISDSGIR-MKEDTLLDMVNHL 180 (539)
Q Consensus 159 i~~lDaD~~-~~p~~L~~lv~~~ 180 (539)
++++-+|.- +.++.++++++.+
T Consensus 92 ~lv~~~D~P~i~~~~i~~li~~~ 114 (183)
T TIGR00454 92 FLVVSSDLINLRSKIIDSIVDYY 114 (183)
T ss_pred EEEEeCCcCcCCHHHHHHHHHHH
Confidence 899999997 5999999999987
No 224
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=41.09 E-value=4.1e+02 Score=27.12 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=52.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCC-CCCCcHHHHHHHHHhCCC-c--eEEEEecCcc--cCcch--h
Q psy11373 72 VTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLED-DVDPAVPLVEKLCKKYPN-V--DTSVFIGGQV--VGVNP--K 143 (539)
Q Consensus 72 VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~-s~D~t~~il~~l~~~~p~-~--~~~~~~~~~~--~g~~~--K 143 (539)
++|+..-.+ .+.+...|.|++..+.-.+++.++.|+ .++...+.++++...+.. + .+..+.-+.. .+++. |
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~~ 81 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLFK 81 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhccc
Confidence 455555555 466788888886544445777777766 666667778887544322 2 2211211111 12211 1
Q ss_pred hhhHHHH-HH--hcCCcEEEEEcCCCCCCh
Q psy11373 144 INNMEPG-YK--AAKYELILISDSGIRMKE 170 (539)
Q Consensus 144 ~~al~~g-~~--~a~~d~i~~lDaD~~~~p 170 (539)
..+..+- +. ..+-|-++.+|+|+.+..
T Consensus 82 ~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~ 111 (304)
T cd06430 82 PCAAQRLFLPSLLPDVDSLLYVDTDILFLR 111 (304)
T ss_pred HHHHHHHHHHHHhhhhceEEEeccceeecC
Confidence 0110010 10 115689999999999843
No 225
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=41.06 E-value=2.4e+02 Score=26.08 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=31.3
Q ss_pred hhhhHHHHHHhc--CCcEEEEEcCCCC-CChHHHHHHHHhhC
Q psy11373 143 KINNMEPGYKAA--KYELILISDSGIR-MKEDTLLDMVNHLK 181 (539)
Q Consensus 143 K~~al~~g~~~a--~~d~i~~lDaD~~-~~p~~L~~lv~~~~ 181 (539)
....+..|++.. +++.++++-+|+- ++++.++++++.++
T Consensus 76 ~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 76 LNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred HHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 567777777754 4568999999997 59999999999873
No 226
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=40.30 E-value=2.2e+02 Score=27.33 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=52.8
Q ss_pred EecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh--CCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 76 KPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK--YPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 76 IP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~--~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
+|+- ..+.|...|+++.+... -+|+++..... .+.++++... ..++++.....+...| -++++..+...
T Consensus 26 lpv~-~~pli~~~l~~l~~~gi--~~i~vv~~~~~---~~~~~~~l~~~~~~~~~i~~~~~~~~~G---~~~al~~a~~~ 96 (240)
T cd02538 26 LPVY-DKPMIYYPLSTLMLAGI--REILIISTPED---LPLFKELLGDGSDLGIRITYAVQPKPGG---LAQAFIIGEEF 96 (240)
T ss_pred eEEC-CEEhHHHHHHHHHHCCC--CEEEEEeCcch---HHHHHHHHhcccccCceEEEeeCCCCCC---HHHHHHHHHHh
Confidence 3554 46788889998876432 35666654321 1222232221 1233343333333344 46777777666
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
.+.|-++++.+|..+.+.-+.++++..
T Consensus 97 ~~~~~~lv~~gD~~~~~~~~~~~~~~~ 123 (240)
T cd02538 97 IGDDPVCLILGDNIFYGQGLSPILQRA 123 (240)
T ss_pred cCCCCEEEEECCEEEccHHHHHHHHHH
Confidence 655555666888776555677777655
No 227
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=39.57 E-value=2.5e+02 Score=28.17 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=60.2
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh--CCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK--YPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~--~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
++|+++ .+.|.-+|+.+...-- -+|++|.+..+-+ ..+++..+ .-.++++...++++.| =++|+..|-.
T Consensus 25 LlpV~~-KPmi~y~l~~L~~aGI--~dI~II~~~~~~~---~~~~llGdgs~~gv~itY~~Q~~p~G---lA~Av~~a~~ 95 (286)
T COG1209 25 LLPVYD-KPMIYYPLETLMLAGI--RDILIVVGPEDKP---TFKELLGDGSDFGVDITYAVQPEPDG---LAHAVLIAED 95 (286)
T ss_pred cceecC-cchhHhHHHHHHHcCC--ceEEEEecCCchh---hhhhhhcCccccCcceEEEecCCCCc---HHHHHHHHHh
Confidence 577887 4577888888876432 4566665443322 23333222 1234567778888888 4777777777
Q ss_pred hcC-CcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 153 AAK-YELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 153 ~a~-~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
... .++++++.++.... -+++.++.+
T Consensus 96 fv~~~~f~l~LGDNi~~~--~l~~~~~~~ 122 (286)
T COG1209 96 FVGDDDFVLYLGDNIFQD--GLSELLEHF 122 (286)
T ss_pred hcCCCceEEEecCceecc--ChHHHHHHH
Confidence 776 66766665555444 778888877
No 228
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=39.32 E-value=3.1e+02 Score=25.41 Aligned_cols=106 Identities=8% Similarity=-0.030 Sum_probs=57.1
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
.||-.-++.+..+...+.+.++. .++|++=..|+.+.+..+....+.......+..........|+.---.++..-+-.
T Consensus 5 ~vInL~~~~~Rr~~~~~~~~~~~-~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~v~ 83 (200)
T PF01755_consen 5 YVINLDRSTERRERIQQQLAKLG-INFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRIVD 83 (200)
T ss_pred EEEECCCCHHHHHHHHHHHHHcC-CceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHHHH
Confidence 35555566555555555554442 36999999999877664433333211111000001122234432222233333444
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
.+.++++++-+|+.+.+++.+.+....
T Consensus 84 ~~~~~~lIlEDDv~~~~~f~~~l~~~~ 110 (200)
T PF01755_consen 84 SGLEYALILEDDVIFDPDFKEFLEEIL 110 (200)
T ss_pred cCCCeEEEEeccccccccHHHHHHHHH
Confidence 466999999999999998766554433
No 229
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=39.22 E-value=9.1 Score=33.71 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccccceeeEehHHHHHhCCCccc
Q psy11373 243 PFTGMSTLTRKSIFDELGGIKTF 265 (539)
Q Consensus 243 ~~~G~~~~~rr~~~~~vGgf~~~ 265 (539)
.+.|+++++||++++++|||++.
T Consensus 153 ~~~g~~~~~~~~~~~~~ggf~~~ 175 (180)
T cd06423 153 VLSGAFGAFRREALREVGGWDED 175 (180)
T ss_pred ecCchHHHHHHHHHHHhCCcccc
Confidence 47899999999999999998764
No 230
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=39.06 E-value=2.9e+02 Score=29.58 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=55.8
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
++|..+ .+.++..++++.+..- -+++++..... +.+++.... . ++.++..++..| -+.++..+....
T Consensus 27 l~~i~g-kpli~~~i~~l~~~gi--~~i~vv~~~~~----~~i~~~~~~-~--~~~~i~~~~~~G---t~~al~~a~~~l 93 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANELGA--QHVHLVYGHGG----DLLKQTLAD-E--PLNWVLQAEQLG---TGHAMQQAAPFF 93 (456)
T ss_pred cceeCC-hhHHHHHHHHHHhcCC--CcEEEEECCCH----HHHHHhhcc-C--CcEEEECCCCCC---cHHHHHHHHHhh
Confidence 345544 6678888888876532 35666654321 223332221 1 234444554445 356666666654
Q ss_pred -CCcEEEEEcCCC-CCChHHHHHHHHhh
Q psy11373 155 -KYELILISDSGI-RMKEDTLLDMVNHL 180 (539)
Q Consensus 155 -~~d~i~~lDaD~-~~~p~~L~~lv~~~ 180 (539)
+.+.++++++|. .+.++.++++++..
T Consensus 94 ~~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 94 ADDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred ccCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 357899999998 46888999988765
No 231
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=38.09 E-value=1.5e+02 Score=27.72 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=56.1
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh--CC----CceEEEEe------cCcccCcch
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK--YP----NVDTSVFI------GGQVVGVNP 142 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~--~p----~~~~~~~~------~~~~~g~~~ 142 (539)
++|+.|..+.|...|+.+.+... -+++++.....+ ++.+.+... +. +..++++. .+...|
T Consensus 23 llpv~g~~pli~~~l~~l~~~gi--~~iivv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--- 94 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNSGI--RNVGVLTQYKSR---SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRG--- 94 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHCCC--CEEEEEeCCChH---HHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccC---
Confidence 77887765788889998877533 467777665433 333333211 10 01122222 123344
Q ss_pred hhhhHHHHHHhc---CCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 143 KINNMEPGYKAA---KYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 143 K~~al~~g~~~a---~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
-++++..+.... +.|.++++.+|.. .+.-++++++..
T Consensus 95 ta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~ 134 (200)
T cd02508 95 TADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFH 134 (200)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHH
Confidence 366666666554 2578889999995 445677777765
No 232
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=37.65 E-value=2.8e+02 Score=28.00 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=57.8
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHH-------------------HHHh-CCCceEEEEec
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEK-------------------LCKK-YPNVDTSVFIG 134 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~-------------------l~~~-~p~~~~~~~~~ 134 (539)
++|+.+ .+-|...|+.+.+... -+|+++.....+.-.+.+.. +... .+.++++.+.+
T Consensus 28 LvpV~g-kPiI~~vl~~l~~~Gi--~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 104 (297)
T TIGR01105 28 MLPIVD-KPMIQYIVDEIVAAGI--KEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQ 104 (297)
T ss_pred eeEECC-EEHHHHHHHHHHHCCC--CEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeC
Confidence 666655 4588888998886533 46777776543322222110 0000 13445665666
Q ss_pred CcccCcchhhhhHHHHHHhcC-CcEEEEEcCCCCCCh-------HHHHHHHHhh
Q psy11373 135 GQVVGVNPKINNMEPGYKAAK-YELILISDSGIRMKE-------DTLLDMVNHL 180 (539)
Q Consensus 135 ~~~~g~~~K~~al~~g~~~a~-~d~i~~lDaD~~~~p-------~~L~~lv~~~ 180 (539)
++..| =++++..+..... .+++++. +|+..++ -.++++++.+
T Consensus 105 ~~~lG---tg~Av~~a~~~l~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~ 154 (297)
T TIGR01105 105 AQPLG---LGHSILCARPVVGDNPFVVVL-PDIIIDDATADPLRYNLAAMIARF 154 (297)
T ss_pred CCcCc---hHHHHHHHHHHhCCCCEEEEE-CCeeccccccccchhHHHHHHHHH
Confidence 77777 4667767766654 4565554 8887754 3777888765
No 233
>KOG0799|consensus
Probab=37.50 E-value=3.8e+02 Score=28.85 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=69.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcc---cCcchh---
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQV---VGVNPK--- 143 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~---~g~~~K--- 143 (539)
.+..+.-+|...+.+++.|+++-. | +.=.|.+|..|+++-...++++...+|++.+ ...... .|.+-=
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh---PqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v--~~k~~~v~~~G~s~l~a~ 178 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH---PQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIV--LPKRESVTYGGHSILAAH 178 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC---CcCcceEEECCCCCHHHHHHHHHHHhcCCceEE--eccccceecCCchhhHHH
Confidence 578888889999999999988754 3 4668889999999988899999999998744 221221 121110
Q ss_pred hhhHHHHHHhc-CCcEEEEEc-CCCCC-ChHHHHHHHHhh
Q psy11373 144 INNMEPGYKAA-KYELILISD-SGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 144 ~~al~~g~~~a-~~d~i~~lD-aD~~~-~p~~L~~lv~~~ 180 (539)
-+++...++.. +-||++.+= .|..+ +.+-|.++.+.+
T Consensus 179 l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 179 LNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred HHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 11222222222 367766664 45544 778888888887
No 234
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=34.84 E-value=65 Score=30.98 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=41.0
Q ss_pred EEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEE
Q psy11373 73 TILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTS 130 (539)
Q Consensus 73 SIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~ 130 (539)
.|||+-+||+. |+-..+ ..|++.-.++|-++.|.-.++++.+.++||++++.
T Consensus 31 ~VIi~gR~e~~-----L~e~~~-~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl 82 (245)
T COG3967 31 TVIICGRNEER-----LAEAKA-ENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL 82 (245)
T ss_pred EEEEecCcHHH-----HHHHHh-cCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence 79999999762 333332 45777788888888999999999999999998763
No 235
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=34.40 E-value=2.1e+02 Score=29.48 Aligned_cols=95 Identities=9% Similarity=0.123 Sum_probs=54.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCC-CCCCcHHHHHHHHHhC--CCceEEEEecCcccCcchhhhhHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLED-DVDPAVPLVEKLCKKY--PNVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~-s~D~t~~il~~l~~~~--p~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
++|+-|. +-+...|+++.+.. --+|+++... .. +.+++...+. .++++..+......| -+.++..+.
T Consensus 24 l~pv~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~G---~~~al~~a~ 93 (353)
T TIGR01208 24 LIPVANK-PILQYAIEDLAEAG--ITDIGIVVGPVTG----EEIKEIVGEGERFGAKITYIVQGEPLG---LAHAVYTAR 93 (353)
T ss_pred ccEECCE-eHHHHHHHHHHHCC--CCEEEEEeCCCCH----HHHHHHHhcccccCceEEEEECCCCCC---HHHHHHHHH
Confidence 3455555 78899999987653 2466666554 22 2233332221 123344444444455 567777777
Q ss_pred HhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 152 KAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 152 ~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
...+.+-++++.+|...+. .+.++++.+
T Consensus 94 ~~l~~~~~li~~gD~~~~~-~l~~l~~~~ 121 (353)
T TIGR01208 94 DFLGDDDFVVYLGDNLIQD-GISRFVKSF 121 (353)
T ss_pred HhcCCCCEEEEECCeecCc-cHHHHHHHH
Confidence 7654444556789998764 456677665
No 236
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=34.09 E-value=3.9e+02 Score=26.03 Aligned_cols=99 Identities=8% Similarity=0.062 Sum_probs=51.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEE-------------------EecC
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSV-------------------FIGG 135 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~-------------------~~~~ 135 (539)
++|+-| .+-|..+|+++.+..- -+|+++.....+...+.+.+.....++.++.. ....
T Consensus 24 llpv~g-~pii~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (254)
T TIGR02623 24 MVEIGG-KPILWHIMKIYSHHGI--NDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTG 100 (254)
T ss_pred eeEECC-EEHHHHHHHHHHHCCC--CEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecccccccccccCCccceeeeecC
Confidence 556655 4577888888876522 46777665433332333322211111222211 1111
Q ss_pred cccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 136 QVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 136 ~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
+..| =++++..+.+..+.+.++++++|...+.+ ++++++..
T Consensus 101 ~~~g---t~~al~~~~~~i~~e~flv~~gD~i~~~d-l~~~~~~h 141 (254)
T TIGR02623 101 ESTQ---TGGRLKRVREYLDDEAFCFTYGDGVADID-IKALIAFH 141 (254)
T ss_pred CcCC---cHHHHHHHHHhcCCCeEEEEeCCeEecCC-HHHHHHHH
Confidence 2223 24566666665555677799999976555 44555544
No 237
>PRK13660 hypothetical protein; Provisional
Probab=33.18 E-value=2.6e+02 Score=26.20 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCCCeEEEEEeCCC--CCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH-hcCCcEEEEE
Q psy11373 86 YSNLETFFTMSYPKYEICFCLEDD--VDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK-AAKYELILIS 162 (539)
Q Consensus 86 ~~~L~Sl~~q~yp~~eIIvvdd~s--~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~-~a~~d~i~~l 162 (539)
.+.|.++.+. .++.+++-..- +-=+.+++.++.++||++++.++.+-++.+.+.+..+-..--. .++.|++..+
T Consensus 32 ~~~l~~~~e~---G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~v 108 (182)
T PRK13660 32 KRKLIALLEE---GLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSI 108 (182)
T ss_pred HHHHHHHHHC---CCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEe
Confidence 3444444442 35655553322 1124588889999999998877777666665444443333223 2578888888
Q ss_pred cCCCCCChHHHHHHHHhh-CCCeeEEE
Q psy11373 163 DSGIRMKEDTLLDMVNHL-KPGVGLVH 188 (539)
Q Consensus 163 DaD~~~~p~~L~~lv~~~-~~~vg~V~ 188 (539)
-..-.-.|..+.+=...+ +..-+++.
T Consensus 109 s~~~y~~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 109 SKRPYESPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred cCCCCCChHHHHHHHHHHHHccCeEEE
Confidence 666555788888888888 44434443
No 238
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=32.94 E-value=2.6e+02 Score=27.43 Aligned_cols=97 Identities=7% Similarity=0.044 Sum_probs=58.7
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecC--cccC--cchh--hhhHHHH-HH
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG--QVVG--VNPK--INNMEPG-YK 152 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~--~~~g--~~~K--~~al~~g-~~ 152 (539)
+....+..++.|++..+-.++.+.+++|+-+++..+.++++..++.. .+.++.-. .... ...+ ..+.... +.
T Consensus 11 ~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~-~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~ 89 (248)
T cd06432 11 LYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGF-EYELVTYKWPRWLHKQTEKQRIIWGYKILFLD 89 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCC-ceEEEEecChhhhhcccccchhHHHHHHHHHH
Confidence 34466788999998765346999999999888888899888777643 33333211 1000 0001 0011111 11
Q ss_pred ---hcCCcEEEEEcCCCCCChHHHHHHHH
Q psy11373 153 ---AAKYELILISDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 153 ---~a~~d~i~~lDaD~~~~p~~L~~lv~ 178 (539)
-..-|-++.+|+|+.+. +-|+++..
T Consensus 90 ~lLP~~vdkvLYLD~Dilv~-~dL~eL~~ 117 (248)
T cd06432 90 VLFPLNVDKVIFVDADQIVR-TDLKELMD 117 (248)
T ss_pred HhhhhccCEEEEEcCCceec-ccHHHHHh
Confidence 12578999999999886 44555544
No 239
>KOG1022|consensus
Probab=32.80 E-value=1.3e+02 Score=32.92 Aligned_cols=102 Identities=18% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCCCC-eEEEEEeCCC-CCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhh
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSYPK-YEICFCLEDD-VDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKIN 145 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~-~eIIvvdd~s-~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~ 145 (539)
.....+.++-+||.-+.|...++...+ -|. -+|+||=++- ..+-.+..+. +-.+.+++.++.+| |-+
T Consensus 441 ~~qgFTlim~TYdR~d~L~k~v~~ys~--vPsL~kIlVVWNnq~k~PP~es~~~----~~~VPlr~r~qkeN-----sLn 509 (691)
T KOG1022|consen 441 HSQGFTLIMLTYDRVDLLKKLVKHYSR--VPSLKKILVVWNNQGKNPPPESLEP----DIAVPLRFRQQKEN-----SLN 509 (691)
T ss_pred cccceeeeeehHHHHHHHHHHHHHHhh--CCCcceEEEEecCCCCCCChhhccc----cCCccEEEEehhhh-----hhh
Confidence 344699999999988888888877643 465 4555554431 1222222222 22233443333222 333
Q ss_pred hHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 146 NMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 146 al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
|.-.-+...+.+-++-+|+|++++.|-|+.--+-.
T Consensus 510 NRF~~~peieT~AVL~IDDDIim~~ddldFgf~VW 544 (691)
T KOG1022|consen 510 NRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVW 544 (691)
T ss_pred cccccCcccccceeEEecCceeeecchhHHHHHHH
Confidence 33344456689999999999999877776554443
No 240
>PF14979 TMEM52: Transmembrane 52
Probab=31.17 E-value=2e+02 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=24.6
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHcCCCCC-eEEEEE
Q psy11373 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSYPK-YEICFC 105 (539)
Q Consensus 68 ~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~-~eIIvv 105 (539)
..++..+-+-..+.+..+..++.|...-.||- .+|..+
T Consensus 60 ~~~P~~~TVia~D~DSt~hsTvTS~sSVq~P~~~ri~~~ 98 (154)
T PF14979_consen 60 APQPYEVTVIAVDSDSTLHSTVTSYSSVQYPAGRRIPLV 98 (154)
T ss_pred CCCCceEEEEeccCCccccchhhhhhcccccccccccce
Confidence 33444554445677778888888888778884 444443
No 241
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.09 E-value=46 Score=30.79 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=33.1
Q ss_pred ccceeeEehHHHHHhCCCccccccchhhhhhhhhhhhhhhc------ccCCcceeccc
Q psy11373 245 TGMSTLTRKSIFDELGGIKTFGCYLAEERMKEDTLLDMVNH------LKPGVGLVHQM 296 (539)
Q Consensus 245 ~G~~~~~rr~~~~~vGgf~~~~~~~~ed~~~~di~~~~~~~------~~p~~~~~~~~ 296 (539)
.+++++++|+.++++||++...+... ||.+.+++.. ..|+..+.|+.
T Consensus 122 ~~~~~~~~~~~~~~~g~~~~~~~~~~-----eD~~~~~r~~~~G~~i~~~~~~~~h~~ 174 (202)
T cd04185 122 SFVGVLISRRVVEKIGLPDKEFFIWG-----DDTEYTLRASKAGPGIYVPDAVVVHKT 174 (202)
T ss_pred ceEEEEEeHHHHHHhCCCChhhhccc-----hHHHHHHHHHHcCCcEEecceEEEEcc
Confidence 34678999999999999876544334 4555555444 77888888875
No 242
>COG3162 Predicted membrane protein [Function unknown]
Probab=30.70 E-value=2.8e+02 Score=23.23 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=15.5
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy11373 384 QNSGYCDVTSFRNRLSRWVK 403 (539)
Q Consensus 384 ~~~~~~s~~~~~~qr~RW~r 403 (539)
.-..+..++++.+||.|.+-
T Consensus 8 ~i~a~p~f~eLv~kr~~Fa~ 27 (102)
T COG3162 8 RIAANPRFRELVRKRRRFAV 27 (102)
T ss_pred ccccCHhHHHHHHHHHHHHH
Confidence 34467889999999998754
No 243
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.48 E-value=4.3e+02 Score=24.21 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEE
Q psy11373 80 GTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELI 159 (539)
Q Consensus 80 ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i 159 (539)
+..+.+.+.++...+. +..|.++ .++++...+..+.+.++||++++.-...+.- ...-...+...+..++.|++
T Consensus 32 ~g~dl~~~l~~~~~~~---~~~ifll-G~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQR---GKRIFLL-GGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--DEEEEEAIINRINASGPDIV 105 (172)
T ss_pred CHHHHHHHHHHHHHHc---CCeEEEE-eCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEE
Confidence 3445566666655443 3455555 3334444556667889999886532222211 11245567778888899988
Q ss_pred EEEcCCCCCChHHHHHHHHhhCCCeeEEEe
Q psy11373 160 LISDSGIRMKEDTLLDMVNHLKPGVGLVHQ 189 (539)
Q Consensus 160 ~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g 189 (539)
++--. +--.+.|+.+..+.++..+.+..|
T Consensus 106 ~vglG-~PkQE~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 106 FVGLG-APKQERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred EEECC-CCHHHHHHHHHHHHCCCCEEEEEC
Confidence 76432 222567888888887655665555
No 244
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=30.38 E-value=2.5e+02 Score=28.22 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=48.7
Q ss_pred HHHHHcCCCCCeE-EEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhh------hhHHHHHHhcCCcEEEE
Q psy11373 89 LETFFTMSYPKYE-ICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKI------NNMEPGYKAAKYELILI 161 (539)
Q Consensus 89 L~Sl~~q~yp~~e-IIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~------~al~~g~~~a~~d~i~~ 161 (539)
++.+.+|..++.. |++..+...++..+.++++...-..-+..++....+....-+. -+++.-++.-..|.+++
T Consensus 87 l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl 166 (274)
T cd01132 87 IDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALII 166 (274)
T ss_pred HHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 4667677666655 6666777778888888887644322233344333222211122 23333333346788888
Q ss_pred EcCCCCCChHHHHHHHHhh
Q psy11373 162 SDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 162 lDaD~~~~p~~L~~lv~~~ 180 (539)
+|+=+. ..+..+++-..+
T Consensus 167 ~DslTr-~A~A~rEisl~~ 184 (274)
T cd01132 167 YDDLSK-QAVAYRQMSLLL 184 (274)
T ss_pred EcChHH-HHHHHHHHHHhc
Confidence 885444 344455554444
No 245
>KOG0916|consensus
Probab=30.01 E-value=51 Score=39.88 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=59.5
Q ss_pred cEEEEEecCCC------hhhHHHHHHHHHcCCCCCeEEEEEeC-CC--CCCcHH----HHHHHHH----hCCCceEEEEe
Q psy11373 71 GVTILKPLTGT------DPNLYSNLETFFTMSYPKYEICFCLE-DD--VDPAVP----LVEKLCK----KYPNVDTSVFI 133 (539)
Q Consensus 71 ~VSIIIP~~ne------~~~l~~~L~Sl~~q~yp~~eIIvvdd-~s--~D~t~~----il~~l~~----~~p~~~~~~~~ 133 (539)
+.+-++.|-.- .+...+.++-++. .||+.+|-.+|. +. .|+... .++.... ...+..+++-.
T Consensus 964 KFtyvVscQ~Y~~~K~~~d~~ae~i~~Lm~-~yp~LriAYide~e~~~~~~~~~~YS~Lvk~~~~~~~~~~~~~iyrIkL 1042 (1679)
T KOG0916|consen 964 KFTYVVSCQRYGNQKFSGDERAENILFLMR-AYPSLRIAYIDEVEPPVEEGEPVYYSVLVKGDCEIDENGLDQEIYRIKL 1042 (1679)
T ss_pred cceEEEehhHhhhhccCCChHHHHHHHHHH-hCccceEeeeccccccccCCCceEEEEeeecCcchhhcccccceEEEeC
Confidence 56777777321 1233466666664 799999999987 32 222110 1111111 11122233334
Q ss_pred cCcccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHH
Q psy11373 134 GGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMV 177 (539)
Q Consensus 134 ~~~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv 177 (539)
++++.=.-||..|-|.++--.+||++-.+|++ ..+++|+.+
T Consensus 1043 pG~pilGeGKpeNQNhaiiFtRGE~iQtIDmN---QDnYlEE~l 1083 (1679)
T KOG0916|consen 1043 PGPPILGEGKPENQNHAIIFTRGEAIQTIDMN---QDNYLEEAL 1083 (1679)
T ss_pred CCCCcCCCCCCcccCceeeeecchhhheeccc---chHHHHHHH
Confidence 44433235699999999999999999999986 345555443
No 246
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=29.51 E-value=1.1e+02 Score=31.27 Aligned_cols=62 Identities=26% Similarity=0.300 Sum_probs=40.9
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ 136 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~ 136 (539)
+....+-++.+.++++.+...+..-..|+...|-+++.+.++.+.+.++||++.+.+...++
T Consensus 242 ~~~~~~~~~~~~~ll~~l~~~~~elvTi~~G~~~~~~~a~~l~~~l~~~~p~~eve~~~GgQ 303 (313)
T PF13684_consen 242 VVVGKDLEEALKKLLEKLLDEDGELVTIYYGEDVSEEEAEALAEFLEEKYPDVEVEVYDGGQ 303 (313)
T ss_pred EEEcCCHHHHHHHHHHHhhccCCeEEEEEecCCCCHHHHHHHHHHHHHHhCCeEEEEEECCC
Confidence 33334444556777777765544336677777777777777777888899998887655544
No 247
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=29.38 E-value=2.1e+02 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.398 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11373 25 YTLSGFAVFFFVFWFGMWFVHLTAIF 50 (539)
Q Consensus 25 ~~i~~~~~~~~i~~~~l~~~~~l~~~ 50 (539)
.++.+....|.++..+.+++.++..+
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444444333
No 248
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=29.35 E-value=7.3e+02 Score=26.57 Aligned_cols=115 Identities=14% Similarity=0.166 Sum_probs=61.8
Q ss_pred CCCcEEEEEecC-CChhhHHHHHHHHHcCCCCCeEEEEEeC-CCCCCcHHHHHHH------HHhCCCceEEEEecCc---
Q psy11373 68 PYPGVTILKPLT-GTDPNLYSNLETFFTMSYPKYEICFCLE-DDVDPAVPLVEKL------CKKYPNVDTSVFIGGQ--- 136 (539)
Q Consensus 68 ~~p~VSIIIP~~-ne~~~l~~~L~Sl~~q~yp~~eIIvvdd-~s~D~t~~il~~l------~~~~p~~~~~~~~~~~--- 136 (539)
..|+.+-+|-++ |+.+.++++|+++ ..|+-.+++-.| .|++.-...+... ...++++.+ +....
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aL---YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v--l~k~~~V~ 150 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRAL---YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM--ITKANLVT 150 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHh---cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE--Eecceeec
Confidence 467899999888 7778899999887 445544555445 4555432222222 234566533 22211
Q ss_pred ccCcchhhhhHH----HHHHh-cCCcEEEEEcCCCCC--ChHHHHHHHHhhCCCeeEEE
Q psy11373 137 VVGVNPKINNME----PGYKA-AKYELILISDSGIRM--KEDTLLDMVNHLKPGVGLVH 188 (539)
Q Consensus 137 ~~g~~~K~~al~----~g~~~-a~~d~i~~lDaD~~~--~p~~L~~lv~~~~~~vg~V~ 188 (539)
..|. .-..|-. ..++. .+.||++.+-+.+.+ +.+.+-+.....+.+...+.
T Consensus 151 WGG~-S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~ 208 (421)
T PLN03183 151 YRGP-TMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIE 208 (421)
T ss_pred cCCh-HHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeee
Confidence 1222 1222222 33332 377999999998887 66654332222244444444
No 249
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=28.60 E-value=5.3e+02 Score=24.65 Aligned_cols=97 Identities=5% Similarity=0.020 Sum_probs=52.3
Q ss_pred EEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCC-CCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHH
Q psy11373 74 ILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLED-DVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYK 152 (539)
Q Consensus 74 IIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~-s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~ 152 (539)
|.|=+-++..+++..++++.+...+ .+|.+|.-+ .+-...+.+++. ++.+......+....+.....+...++
T Consensus 2 i~vl~Sg~Gsn~~al~~~~~~~~l~-~~i~~visn~~~~~~~~~A~~~-----gIp~~~~~~~~~~~~~~~~~~~~~~l~ 75 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDACLDGRVN-GDVVVVVTNKPGCGGAEYAREN-----GIPVLVYPKTKGEPDGLSPDELVDALR 75 (207)
T ss_pred EEEEEeCCChhHHHHHHHHHcCCCC-eEEEEEEEeCCCChHHHHHHHh-----CCCEEEeccccCCCcccchHHHHHHHH
Confidence 3455567778888888888766554 455444433 333333333332 232221111111111111234555667
Q ss_pred hcCCcEEEEEcCCCCCChHHHHHH
Q psy11373 153 AAKYELILISDSGIRMKEDTLLDM 176 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~~~p~~L~~l 176 (539)
..+.|++++.-=.-.++++.|+..
T Consensus 76 ~~~~Dliv~agy~~il~~~~l~~~ 99 (207)
T PLN02331 76 GAGVDFVLLAGYLKLIPVELVRAY 99 (207)
T ss_pred hcCCCEEEEeCcchhCCHHHHhhC
Confidence 778898888777777888777643
No 250
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.36 E-value=49 Score=30.05 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=18.7
Q ss_pred cccceeeEehHHHHHhCCCccc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTF 265 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~ 265 (539)
..+++++++|++++++|||++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~f~~~ 163 (202)
T cd06433 142 ICHQATFFRRSLFEKYGGFDES 163 (202)
T ss_pred ccCcceEEEHHHHHHhCCCchh
Confidence 5677889999999999998763
No 251
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=28.19 E-value=4.2e+02 Score=23.42 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhC-CCceEEEEecCcccCcchhhhhHHHHHHhcCCcEEEEEcCCC
Q psy11373 100 YEICFCLEDDVDPAVPLVEKLCKKY-PNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGI 166 (539)
Q Consensus 100 ~eIIvvdd~s~D~t~~il~~l~~~~-p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~ 166 (539)
-.||++-|+..++..++.+.+.+.. .++.+..+.-+. +. ....+.......+|.|+-+.|.+.
T Consensus 101 ~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~--~~--~~~~l~~ia~~~gG~~~~~~~~~~ 164 (171)
T cd01461 101 PQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGS--DV--NTYLLERLAREGRGIARRIYETDD 164 (171)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCC--cc--CHHHHHHHHHcCCCeEEEecChHH
Confidence 6777777877655555555543322 133332222111 11 223444444445666666655543
No 252
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=27.57 E-value=5.7e+02 Score=24.93 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a 154 (539)
+.|.- .++.|..+|+.+.+..+- -++++. .|++++-+.+++++.++.. .+ .++..... -.-...+++.-
T Consensus 22 LlpL~-~~pmI~~~lervrks~~~-d~ivvA--TS~~~~d~~l~~~~~~~G~---~v-frGs~~dV---L~Rf~~a~~a~ 90 (241)
T COG1861 22 LLPLG-GEPMIEYQLERVRKSKDL-DKIVVA--TSDKEEDDALEEVCRSHGF---YV-FRGSEEDV---LQRFIIAIKAY 90 (241)
T ss_pred hhhcC-CCchHHHHHHHHhccccc-cceEEE--ecCCcchhHHHHHHHHcCe---eE-ecCCHHHH---HHHHHHHHHhc
Confidence 34443 345788899999876542 234433 4566666677777766543 22 22221111 11123345556
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHhh-CCCeeEEEe
Q psy11373 155 KYELILISDSGIRM-KEDTLLDMVNHL-KPGVGLVHQ 189 (539)
Q Consensus 155 ~~d~i~~lDaD~~~-~p~~L~~lv~~~-~~~vg~V~g 189 (539)
+++.|+-+-+||-. +|+.+..++..+ +.+..-++.
T Consensus 91 ~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~ 127 (241)
T COG1861 91 SADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN 127 (241)
T ss_pred CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc
Confidence 88999999999976 999999998876 555555544
No 253
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=27.14 E-value=4e+02 Score=25.07 Aligned_cols=85 Identities=6% Similarity=0.114 Sum_probs=54.9
Q ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCccc-CcchhhhhHHHHHHhcCCc
Q psy11373 79 TGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVV-GVNPKINNMEPGYKAAKYE 157 (539)
Q Consensus 79 ~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~-g~~~K~~al~~g~~~a~~d 157 (539)
.|..+-++..++.+..|. + +++++-+...+ . + ..+. + .++....+. | -...+..|+++.+++
T Consensus 26 ~~g~~lie~v~~~L~~~~--~-~vvi~~~~~~~--~-----~-~~~g-~--~vv~D~~~~~G---PL~Gi~~al~~~~~~ 88 (192)
T COG0746 26 LNGRPLIEHVIDRLRPQV--D-VVVISANRNQG--R-----Y-AEFG-L--PVVPDELPGFG---PLAGILAALRHFGTE 88 (192)
T ss_pred eCCeEHHHHHHHHhcccC--C-EEEEeCCCchh--h-----h-hccC-C--ceeecCCCCCC---CHHHHHHHHHhCCCC
Confidence 355666777777776552 2 34443332222 1 1 1122 2 334444333 4 467788999999999
Q ss_pred EEEEEcCCCCC-ChHHHHHHHHhh
Q psy11373 158 LILISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 158 ~i~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
+++++=.|+-. +++.++++.+.+
T Consensus 89 ~~~v~~~D~P~i~~~lv~~l~~~~ 112 (192)
T COG0746 89 WVLVLPCDMPFIPPELVERLLSAF 112 (192)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhh
Confidence 99999999975 999999999988
No 254
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.10 E-value=1.7e+02 Score=31.04 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEEeCCCC-----CCcHHHHHHHHHhCCCceEEEE
Q psy11373 79 TGTDPNLYSNLETFFTMSYPKYEICFCLEDDV-----DPAVPLVEKLCKKYPNVDTSVF 132 (539)
Q Consensus 79 ~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~-----D~t~~il~~l~~~~p~~~~~~~ 132 (539)
++.+++|.+.|+.+.+ .||+-++|+|...+. |+...+++++..++|++.+..+
T Consensus 69 fGg~~~L~~aI~~~~~-~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v 126 (415)
T cd01977 69 FGGEKKLKKNIIEAFK-EFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVC 126 (415)
T ss_pred eccHHHHHHHHHHHHH-hCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEE
Confidence 4556889999999887 688777777777654 5667788888878875555333
No 255
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=26.74 E-value=4.7e+02 Score=26.94 Aligned_cols=100 Identities=9% Similarity=0.000 Sum_probs=61.5
Q ss_pred EEEEec-CCChhhHHHHHHHHHcCCCC-CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcch---hhhhH
Q psy11373 73 TILKPL-TGTDPNLYSNLETFFTMSYP-KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNP---KINNM 147 (539)
Q Consensus 73 SIIIP~-~ne~~~l~~~L~Sl~~q~yp-~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~---K~~al 147 (539)
.|+... .|-...+..++.|++...-. .+.+-+.+|+=+++-...+++..+.+...-.-..+..+.....+ |.-..
T Consensus 4 ~Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~~~s~ 83 (325)
T COG1442 4 PIAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLDYPPFTKRFSK 83 (325)
T ss_pred cEEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhhcccccccchHH
Confidence 344444 45556678899999865432 68899999998888888888887777543111223332222222 22222
Q ss_pred HHHHHh------cCCcEEEEEcCCCCCChHH
Q psy11373 148 EPGYKA------AKYELILISDSGIRMKEDT 172 (539)
Q Consensus 148 ~~g~~~------a~~d~i~~lDaD~~~~p~~ 172 (539)
....+. .++|=++.+|+|+.+..+.
T Consensus 84 ~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l 114 (325)
T COG1442 84 MVLVRYFLADLFPQYDKMLYLDVDVIFCGDL 114 (325)
T ss_pred HHHHHHHHHHhccccCeEEEEecCEEEcCcH
Confidence 222221 1569999999999986553
No 256
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=26.52 E-value=82 Score=30.20 Aligned_cols=76 Identities=7% Similarity=0.069 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCCC--cHHHHHHHHHhCCCceEEEEecCcc------cCcch-hhhhHHHHHHhc-------CCcEEEE
Q psy11373 98 PKYEICFCLEDDVDP--AVPLVEKLCKKYPNVDTSVFIGGQV------VGVNP-KINNMEPGYKAA-------KYELILI 161 (539)
Q Consensus 98 p~~eIIvvdd~s~D~--t~~il~~l~~~~p~~~~~~~~~~~~------~g~~~-K~~al~~g~~~a-------~~d~i~~ 161 (539)
|++.-|||+|++.-. +.+++++. ++.++.+....+ ....+ -..+.|.|++.. ..-+|.|
T Consensus 9 ~~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyF 83 (207)
T PF03360_consen 9 PPLHWIVVEDSEETTPLVARLLRRS-----GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYF 83 (207)
T ss_dssp SSEEEEEEESSSS--HHHHHHHHHH-----TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHc-----CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEE
Confidence 578899999876433 34455443 233333322221 11101 144666676544 3568999
Q ss_pred EcCCCCCChHHHHHHHH
Q psy11373 162 SDSGIRMKEDTLLDMVN 178 (539)
Q Consensus 162 lDaD~~~~p~~L~~lv~ 178 (539)
.|+|...+-+..++|-+
T Consensus 84 aDDdNtYdl~LF~emR~ 100 (207)
T PF03360_consen 84 ADDDNTYDLRLFDEMRK 100 (207)
T ss_dssp --TTSEE-HHHHHHHCT
T ss_pred CCCCCeeeHHHHHHHHh
Confidence 99999999999998643
No 257
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=26.24 E-value=6e+02 Score=27.47 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEEeCCCC-----CCcHHHHHHHHHhCCCceEEEEe
Q psy11373 79 TGTDPNLYSNLETFFTMSYPKYEICFCLEDDV-----DPAVPLVEKLCKKYPNVDTSVFI 133 (539)
Q Consensus 79 ~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~-----D~t~~il~~l~~~~p~~~~~~~~ 133 (539)
++.++.|.+.|+.+.+. ||+-+.|+|...+. |+...+++++..++|++.+..+.
T Consensus 108 fGg~~kL~~aI~~~~~~-~~~p~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~~~vi~v~ 166 (461)
T TIGR01860 108 FGGEKQLEKSIHEAFDE-FPDIKRMIVYTTCPTALIGDDIKAVAKKVQKELPDVDIFTVE 166 (461)
T ss_pred eCcHHHHHHHHHHHHHh-CCCCCEEEEEccCchhhhcCCHHHHHHHHHHhcCCCcEEEEe
Confidence 56677899999998875 76555555555543 56677888888777765553333
No 258
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=25.45 E-value=5e+02 Score=27.34 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=48.4
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCc--ccCcchhhhhHHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ--VVGVNPKINNMEPGYK 152 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~--~~g~~~K~~al~~g~~ 152 (539)
++|+- +.+-|...++.+.+. . -+++++..... .++.+.+...++++ +++..++ ..| -.+++.. .
T Consensus 24 Llpi~-gkPli~~~i~~l~~~-~--~~i~Ivv~~~~---~~i~~~~~~~~~~v--~~~~~~~~~~~g---t~~al~~-~- 89 (430)
T PRK14359 24 LHTIC-GKPMLFYILKEAFAI-S--DDVHVVLHHQK---ERIKEAVLEYFPGV--IFHTQDLENYPG---TGGALMG-I- 89 (430)
T ss_pred eCEEC-CccHHHHHHHHHHHc-C--CcEEEEECCCH---HHHHHHHHhcCCce--EEEEecCccCCC---cHHHHhh-c-
Confidence 34553 466778888888764 2 24555543222 22333333334444 3333222 233 2344433 1
Q ss_pred hcCCcEEEEEcCCCC-CChHHHHHHHH
Q psy11373 153 AAKYELILISDSGIR-MKEDTLLDMVN 178 (539)
Q Consensus 153 ~a~~d~i~~lDaD~~-~~p~~L~~lv~ 178 (539)
....|.++++++|.. ..++.++++.+
T Consensus 90 ~~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 90 EPKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred ccCCCeEEEEECCccCCCHHHHHHHHh
Confidence 234689999999994 58888888765
No 259
>PRK10122 GalU regulator GalF; Provisional
Probab=24.18 E-value=7.4e+02 Score=24.90 Aligned_cols=99 Identities=12% Similarity=0.186 Sum_probs=57.2
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHH-------------------HHHHHh-CCCceEEEEec
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLV-------------------EKLCKK-YPNVDTSVFIG 134 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il-------------------~~l~~~-~p~~~~~~~~~ 134 (539)
++|+-|. +.|...|+++.+..- -+|+++.....+...+.+ +.+... .+.+++..+.+
T Consensus 28 llpi~gk-piI~~~l~~l~~~Gi--~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q 104 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVAAGI--KEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQ 104 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHCCC--CEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEeec
Confidence 5676665 888999999987533 356666544222111111 011010 13445555566
Q ss_pred CcccCcchhhhhHHHHHHhc-CCcEEEEEcCCCCCChH-------HHHHHHHhh
Q psy11373 135 GQVVGVNPKINNMEPGYKAA-KYELILISDSGIRMKED-------TLLDMVNHL 180 (539)
Q Consensus 135 ~~~~g~~~K~~al~~g~~~a-~~d~i~~lDaD~~~~p~-------~L~~lv~~~ 180 (539)
.+..| -++++..+...- +.+++++. +|+..+++ -+.++++..
T Consensus 105 ~~~lG---tg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h 154 (297)
T PRK10122 105 GQPLG---LGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARF 154 (297)
T ss_pred CCcCc---hHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHH
Confidence 66666 477777776665 35676666 88777543 477787765
No 260
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=24.02 E-value=6.1e+02 Score=24.63 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=47.3
Q ss_pred EEEEecCcccCcchhhhhHHHHHHhc--CC-c---EEEEEcCCCCCCh---HHHHHHHHhh-C---CCeeEEEeeceecC
Q psy11373 129 TSVFIGGQVVGVNPKINNMEPGYKAA--KY-E---LILISDSGIRMKE---DTLLDMVNHL-K---PGVGLVHQMPFTWD 195 (539)
Q Consensus 129 ~~~~~~~~~~g~~~K~~al~~g~~~a--~~-d---~i~~lDaD~~~~p---~~L~~lv~~~-~---~~vg~V~g~~~~~~ 195 (539)
+.++---...|.++-.+.|...++.+ +| + +-+|+|.-+..|. .+|+++.+.+ + .+++=|+|..+..+
T Consensus 30 lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~g~IAsv~GRyyaMD 109 (223)
T PF06415_consen 30 LHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEIGIGRIASVSGRYYAMD 109 (223)
T ss_dssp EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHTCTEEEEEEECCCCT-
T ss_pred EEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhhCCceEEEEeceeeeec
Confidence 34443334455555555555555544 22 3 5689999887766 6788888777 2 35777899888999
Q ss_pred CCChHHHHHHHHh
Q psy11373 196 RKGFAAALEKTYF 208 (539)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (539)
++.-+++.+..+-
T Consensus 110 RD~rWeRv~~Ay~ 122 (223)
T PF06415_consen 110 RDKRWERVEKAYD 122 (223)
T ss_dssp -TS-HHHHHHHHH
T ss_pred cccCHHHHHHHHH
Confidence 9988888886654
No 261
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.01 E-value=7.4e+02 Score=26.46 Aligned_cols=108 Identities=9% Similarity=0.013 Sum_probs=66.9
Q ss_pred CCCCcEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhh
Q psy11373 67 MPYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146 (539)
Q Consensus 67 ~~~p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~a 146 (539)
.+.|.|=|-=...+|-..+...++.+.+ .||+..+++.. .|+...+.+++ .++.. +.+..-+ .- ...+
T Consensus 47 ~~~p~vWiHaaSVGEv~a~~pLv~~l~~-~~P~~~ilvTt--~T~Tg~e~a~~---~~~~~-v~h~YlP--~D---~~~~ 114 (419)
T COG1519 47 PEGPLVWIHAASVGEVLAALPLVRALRE-RFPDLRILVTT--MTPTGAERAAA---LFGDS-VIHQYLP--LD---LPIA 114 (419)
T ss_pred CCCCeEEEEecchhHHHHHHHHHHHHHH-hCCCCCEEEEe--cCccHHHHHHH---HcCCC-eEEEecC--cC---chHH
Confidence 4456777777778888888999999865 79988877753 34445565554 45542 2222211 11 2234
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhhCCCeeEEEe
Q psy11373 147 MEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQ 189 (539)
Q Consensus 147 l~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~~~~vg~V~g 189 (539)
.+.-++.-+-|..+++-+++++ +.+.++-+. .-..-+|-+
T Consensus 115 v~rFl~~~~P~l~Ii~EtElWP--nli~e~~~~-~~p~~LvNa 154 (419)
T COG1519 115 VRRFLRKWRPKLLIIMETELWP--NLINELKRR-GIPLVLVNA 154 (419)
T ss_pred HHHHHHhcCCCEEEEEeccccH--HHHHHHHHc-CCCEEEEee
Confidence 4667778899999999999884 444444332 333444444
No 262
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=22.87 E-value=9.6e+02 Score=25.77 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHHHHHhc--CCc-EE
Q psy11373 83 PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA--KYE-LI 159 (539)
Q Consensus 83 ~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a--~~d-~i 159 (539)
+.++..+++..+..- -++++|..+..| .+++..++.+. +.++.+.+..| -++|..++...- .++ .+
T Consensus 31 pMl~hVi~~a~~l~~--~~i~vVvGh~ae----~V~~~~~~~~~--v~~v~Q~eqlG---TgHAV~~a~~~l~~~~~g~v 99 (460)
T COG1207 31 PMLEHVIDAARALGP--DDIVVVVGHGAE----QVREALAERDD--VEFVLQEEQLG---TGHAVLQALPALADDYDGDV 99 (460)
T ss_pred cHHHHHHHHHhhcCc--ceEEEEEcCCHH----HHHHHhccccC--ceEEEecccCC---hHHHHHhhhhhhhcCCCCcE
Confidence 456777777766432 245555554433 33333333333 35567777778 466766666554 333 68
Q ss_pred EEEcCCCCC-ChHHHHHHHHhh
Q psy11373 160 LISDSGIRM-KEDTLLDMVNHL 180 (539)
Q Consensus 160 ~~lDaD~~~-~p~~L~~lv~~~ 180 (539)
+++-.|+-+ .++.|++|++.-
T Consensus 100 LVl~GD~PLit~~TL~~L~~~~ 121 (460)
T COG1207 100 LVLYGDVPLITAETLEELLAAH 121 (460)
T ss_pred EEEeCCcccCCHHHHHHHHHhh
Confidence 888899976 999999888875
No 263
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=22.64 E-value=5.2e+02 Score=24.40 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=49.7
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhC-----CCceEEEE--ecCcccCcchhhhhH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKY-----PNVDTSVF--IGGQVVGVNPKINNM 147 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~-----p~~~~~~~--~~~~~~g~~~K~~al 147 (539)
++|+-|. +-|..+|+.+.+... -+|+++.....+. +.+.+...+ +...+.++ ......| =+.++
T Consensus 25 llpv~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~G---ta~~l 95 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEKAGV--EEVFVVCCEHSQA---IIEHLLKSKWSSLSSKMIVDVITSDLCESAG---DALRL 95 (216)
T ss_pred cceECCE-EHHHHHHHHHHHCCC--CeEEEEeCCcHHH---HHHHHHhcccccccCCceEEEEEccCCCCCc---cHHHH
Confidence 4566665 788899999876432 3566666544433 333333222 11222222 2233444 34555
Q ss_pred HHHHHhcCCcEEEEEcCCCCCChHHHHHHH
Q psy11373 148 EPGYKAAKYELILISDSGIRMKEDTLLDMV 177 (539)
Q Consensus 148 ~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv 177 (539)
..+....+.| ++++.+|...+.+. ..++
T Consensus 96 ~~~~~~i~~d-flv~~gD~i~~~~l-~~~l 123 (216)
T cd02507 96 RDIRGLIRSD-FLLLSCDLVSNIPL-SELL 123 (216)
T ss_pred HHHhhcCCCC-EEEEeCCEeecCCH-HHHH
Confidence 5554444555 56799998876654 4444
No 264
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=22.20 E-value=4.3e+02 Score=27.48 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=64.4
Q ss_pred EecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHh--CCCceEEEEecCcccCcchhhhhHHHHHHh
Q psy11373 76 KPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK--YPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153 (539)
Q Consensus 76 IP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~--~p~~~~~~~~~~~~~g~~~K~~al~~g~~~ 153 (539)
+|+- ..+.|+..|+++.++.. -|++++..-- .+.+++...+ ....++..+......| =++++..+...
T Consensus 27 lpI~-gkPii~~~l~~L~~~Gv--~eivi~~~y~----~~~i~~~~~d~~~~~~~I~y~~e~~~lG---Tag~l~~a~~~ 96 (358)
T COG1208 27 LPIA-GKPLIEYVLEALAAAGV--EEIVLVVGYL----GEQIEEYFGDGEGLGVRITYVVEKEPLG---TAGALKNALDL 96 (358)
T ss_pred ceeC-CccHHHHHHHHHHHCCC--cEEEEEeccc----hHHHHHHHhcccccCCceEEEecCCcCc---cHHHHHHHHHh
Confidence 4444 45688999999977533 5677764333 3334444333 2235666667777777 46777777777
Q ss_pred cCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 154 AKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 154 a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
...+-++++..|...+-+ +..+++..
T Consensus 97 l~~~~f~v~~GDv~~~~d-l~~l~~~~ 122 (358)
T COG1208 97 LGGDDFLVLNGDVLTDLD-LSELLEFH 122 (358)
T ss_pred cCCCcEEEEECCeeeccC-HHHHHHHH
Confidence 777888899999999888 99888877
No 265
>KOG1478|consensus
Probab=22.17 E-value=3e+02 Score=27.46 Aligned_cols=61 Identities=5% Similarity=0.044 Sum_probs=36.5
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHcCCCC----CeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEE
Q psy11373 70 PGVTILKPLTGTDPNLYSNLETFFTMSYP----KYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVF 132 (539)
Q Consensus 70 p~VSIIIP~~ne~~~l~~~L~Sl~~q~yp----~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~ 132 (539)
-..++++.|+|-+. .++....+.+ -|| +++++.||=..-.......+++..++++++...+
T Consensus 31 ~~ltl~ltcR~~~k-ae~vc~~lk~-f~p~~~i~~~yvlvD~sNm~Sv~~A~~di~~rf~~ld~iyl 95 (341)
T KOG1478|consen 31 VRLTLCLTCRNMSK-AEAVCAALKA-FHPKSTIEVTYVLVDVSNMQSVFRASKDIKQRFQRLDYIYL 95 (341)
T ss_pred eeEEEEEEeCChhH-HHHHHHHHHH-hCCCceeEEEEEEEehhhHHHHHHHHHHHHHHhhhccEEEE
Confidence 45788888888653 3444455543 456 2566666554444444556677777877766443
No 266
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.13 E-value=69 Score=29.57 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=20.0
Q ss_pred cccceeeEehHHHHHhCCCcccc
Q psy11373 244 FTGMSTLTRKSIFDELGGIKTFG 266 (539)
Q Consensus 244 ~~G~~~~~rr~~~~~vGgf~~~~ 266 (539)
..|+++++||++++++|+|+...
T Consensus 152 ~~~~~~~~r~~~~~~~~~~~~~~ 174 (214)
T cd04196 152 VTGCTMAFNRELLELALPFPDAD 174 (214)
T ss_pred cCCceeeEEHHHHHhhccccccc
Confidence 56888999999999999997753
No 267
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=21.78 E-value=4.2e+02 Score=24.97 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=49.9
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCC---CceEEEEecCcccCcchhhhhHHHHH
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYP---NVDTSVFIGGQVVGVNPKINNMEPGY 151 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p---~~~~~~~~~~~~~g~~~K~~al~~g~ 151 (539)
++|+-|. +-|...|+++.+..- -+|+++.+...+...+.+++...... ...+.++...+..|. ++++....
T Consensus 25 llpi~g~-piI~~~l~~l~~~Gi--~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~---~~al~~~~ 98 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALNGV--EEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSL---GDALRDLD 98 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHCCC--CeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCcc---chHHHHHh
Confidence 6677776 688999999987532 46777766433322222222111000 123444444443342 23332111
Q ss_pred H--hcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 152 K--AAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 152 ~--~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
. ..+ +.++++.+|...+.+ +..+++..
T Consensus 99 ~~~~~~-~~flv~~gD~i~~~d-l~~~l~~h 127 (217)
T cd04197 99 AKGLIR-GDFILVSGDVVSNID-LKEILEEH 127 (217)
T ss_pred hccccC-CCEEEEeCCeeeccC-HHHHHHHH
Confidence 1 113 446688999887655 55566654
No 268
>KOG2264|consensus
Probab=21.16 E-value=1.6e+02 Score=32.28 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=59.9
Q ss_pred cEEEEEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCce--EEEEecCcccCcchhhhhHH
Q psy11373 71 GVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVD--TSVFIGGQVVGVNPKINNME 148 (539)
Q Consensus 71 ~VSIIIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~--~~~~~~~~~~g~~~K~~al~ 148 (539)
.++|++-+|..++.+...|+.+-.+-|- -.|+||=++..|+..+. .+|++. +.++...+|.- ||.-
T Consensus 650 QFTvVmLTYERe~VLm~sLeRL~gLPYL-nKvvVVWNspk~P~ddl------~WPdigvPv~viR~~~NsL-----NNRF 717 (907)
T KOG2264|consen 650 QFTVVMLTYEREAVLMGSLERLHGLPYL-NKVVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAENSL-----NNRF 717 (907)
T ss_pred eEEEEEEEehHHHHHHHHHHHhhCCccc-ceEEEEeCCCCCChhcc------cCcCCCCceEEEEcccccc-----cccc
Confidence 4899999999999999999999887774 36777777777775443 356553 33332222211 1212
Q ss_pred HHHHhcCCcEEEEEcCCCCCChH
Q psy11373 149 PGYKAAKYELILISDSGIRMKED 171 (539)
Q Consensus 149 ~g~~~a~~d~i~~lDaD~~~~p~ 171 (539)
.-......|-++-+|+|..+.-|
T Consensus 718 lPwd~IETEAvLS~DDDahLrhd 740 (907)
T KOG2264|consen 718 LPWDRIETEAVLSLDDDAHLRHD 740 (907)
T ss_pred cCchhhhheeeeecccchhhhhh
Confidence 23455688999999999887443
No 269
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.02 E-value=8.6e+02 Score=26.24 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=38.2
Q ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEEeCCCC-----CCcHHHHHHHHHhCCCceEEEE
Q psy11373 79 TGTDPNLYSNLETFFTMSYPKYEICFCLEDDV-----DPAVPLVEKLCKKYPNVDTSVF 132 (539)
Q Consensus 79 ~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~-----D~t~~il~~l~~~~p~~~~~~~ 132 (539)
++.++.|.+.|+.+.+ .||+-+.|+|...+. |+...+++++..+++++.+..+
T Consensus 106 fGge~kL~~aI~e~~~-~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~~~pvv~v 163 (457)
T TIGR01284 106 FGGEKKLKRCILEAFR-EFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIPDVDVFAI 163 (457)
T ss_pred ecHHHHHHHHHHHHHH-hCCCCceEEEECCChHHhhccCHHHHHHHHHHhcCCCeEEEe
Confidence 4557889999999886 477667777766654 6677888888888876555433
No 270
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=20.52 E-value=6.7e+02 Score=25.33 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=53.0
Q ss_pred EEecCCChhhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHH---H----H------------H-hCCCceEEEEec
Q psy11373 75 LKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEK---L----C------------K-KYPNVDTSVFIG 134 (539)
Q Consensus 75 IIP~~ne~~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~---l----~------------~-~~p~~~~~~~~~ 134 (539)
++|+-|. +-|..+|+++.+... -+|+++.....+...+.+.. + . . ..|...+....+
T Consensus 33 l~pv~g~-pii~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~~~q 109 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAAGI--TEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQ 109 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEEEeec
Confidence 5666665 888999999987532 45666665443322222211 0 0 0 011223333333
Q ss_pred CcccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCC-------hHHHHHHHHhh
Q psy11373 135 GQVVGVNPKINNMEPGYKAAKYELILISDSGIRMK-------EDTLLDMVNHL 180 (539)
Q Consensus 135 ~~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~-------p~~L~~lv~~~ 180 (539)
+...| -++++..+......+-++++.+|...+ ...+.++++..
T Consensus 110 ~~~~G---tg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h 159 (302)
T PRK13389 110 GLAKG---LGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRF 159 (302)
T ss_pred CCCCC---hHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHH
Confidence 44445 356665555544334456667888764 35677777765
No 271
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=20.35 E-value=1.7e+02 Score=25.26 Aligned_cols=62 Identities=8% Similarity=0.069 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHcCCCCCeEEEEEeCCCCCCcHHHHHHHHHhCCCceEEEEecCcccCcchhhhhHHH
Q psy11373 83 PNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEP 149 (539)
Q Consensus 83 ~~l~~~L~Sl~~q~yp~~eIIvvdd~s~D~t~~il~~l~~~~p~~~~~~~~~~~~~g~~~K~~al~~ 149 (539)
+.++++++.+++. +++=||++.+.--+.-.+.++++.+..|- .+.+++..++..+....+..
T Consensus 46 eei~~~~~~~l~~--~digIIlIte~~a~~i~~~I~~~~~~~Pa---IieIP~k~~~y~~~~d~i~~ 107 (115)
T TIGR01101 46 SEIEDCFNRFLKR--DDIAIILINQHIAEMIRHAVDAHTRSIPA---VLEIPSKDHPYDASKDSILR 107 (115)
T ss_pred HHHHHHHHHHhhc--CCeEEEEEcHHHHHHhHHHHHhcCCcCCE---EEEECCCCCCCCCcccHHHH
Confidence 6788999986653 36889999776555555555554433343 24477767776554444433
No 272
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=20.34 E-value=5.4e+02 Score=21.84 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=37.5
Q ss_pred EEEEeCCCCCCcHHHHHHHHHh-CCCceEEEEecCcccCcchhhhhHHHHHHhcCCcEEEEEcCCCCCChHHHHHHHHhh
Q psy11373 102 ICFCLEDDVDPAVPLVEKLCKK-YPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180 (539)
Q Consensus 102 IIvvdd~s~D~t~~il~~l~~~-~p~~~~~~~~~~~~~g~~~K~~al~~g~~~a~~d~i~~lDaD~~~~p~~L~~lv~~~ 180 (539)
||+..=+..+...+.++.+.++ .+..++.++.++...+ ..++..-+......+.++...+..-........++..
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~----~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a 77 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDE----TEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHA 77 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSS----HHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH-
T ss_pred EEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccc----ccccccccccccccccccccccccccccccccccccc
Confidence 4555556677778888888766 4444454334433333 2222222222345566665555543344455555554
Q ss_pred CCC
Q psy11373 181 KPG 183 (539)
Q Consensus 181 ~~~ 183 (539)
..+
T Consensus 78 ~~~ 80 (169)
T PF00535_consen 78 KGE 80 (169)
T ss_dssp -SS
T ss_pred cee
Confidence 333
No 273
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=20.32 E-value=1.1e+02 Score=34.77 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=45.3
Q ss_pred chhhhhHHHHHHhc----CCcEEEEEcCCCCC-ChHHHHHHHHhh-CCC----eeEEEeeceecC
Q psy11373 141 NPKINNMEPGYKAA----KYELILISDSGIRM-KEDTLLDMVNHL-KPG----VGLVHQMPFTWD 195 (539)
Q Consensus 141 ~~K~~al~~g~~~a----~~d~i~~lDaD~~~-~p~~L~~lv~~~-~~~----vg~V~g~~~~~~ 195 (539)
|-|++|+|..++.+ +++||+.+|+|... .|+.+.+.+-.| |++ ++.||-.+.+.+
T Consensus 182 h~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~~ 246 (720)
T PF03552_consen 182 HFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFDG 246 (720)
T ss_pred hhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeCC
Confidence 44999999988765 89999999999977 799999998888 655 888998655543
Done!