RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11373
(539 letters)
>gnl|CDD|133012 cd02520, Glucosylceramide_synthase, Glucosylceramide synthase
catalyzes the first glycosylation step of
glycosphingolipid synthesis.
UDP-glucose:N-acylsphingosine D-glucosyltransferase
(glucosylceramide synthase or ceramide
glucosyltransferase) catalyzes the first glycosylation
step of glycosphingolipid synthesis. Its product,
glucosylceramide, serves as the core of more than 300
glycosphingolipids (GSL). GSLs are a group of membrane
components that have the lipid portion embedded in the
outer plasma membrane leaflet and the sugar chains
extended to the outer environment. Several lines of
evidence suggest the importance of GSLs in various
cellular processes such as differentiation, adhesion,
proliferation, and cell-cell recognition. In pathogenic
fungus Cryptococcus neoformans, glucosylceramide serves
as an antigen that elicits an antibody response in
patients and it is essential for fungal growth in host
extracellular environment.
Length = 196
Score = 204 bits (522), Expect = 4e-63
Identities = 83/203 (40%), Positives = 107/203 (52%), Gaps = 53/203 (26%)
Query: 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDT 129
PGV+ILKPL G DPNLY NLE+FF YPKYEI FC++D+ DPA+P+V KL KYPNVD
Sbjct: 1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDA 60
Query: 130 SVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLVH 188
+ IGG+ VG+NPK+NN+ GY+ A+Y++++ISDS I + D L MV L PGVGLV
Sbjct: 61 RLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVT 120
Query: 189 QMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMS 248
+ A G S
Sbjct: 121 CL--------CA--------------------------------------------FGKS 128
Query: 249 TLTRKSIFDELGGIKTFGCYLAE 271
R+ + D +GG + F YLAE
Sbjct: 129 MALRREVLDAIGGFEAFADYLAE 151
Score = 100 bits (251), Expect = 2e-24
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 36/134 (26%)
Query: 273 RMKEDTLLDMVNHL-KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIP 331
+ D L MV L PGVGLV +
Sbjct: 98 SVPPDYLRRMVAPLMDPGVGLVTCL----------------------------------- 122
Query: 332 CHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDV 391
C G S R+ + D +GG + F YLAED F + + LG+++ +S Q G +
Sbjct: 123 CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSL 182
Query: 392 TSFRNRLSRWVKLR 405
SF R RW + R
Sbjct: 183 ASFWRRQLRWSRTR 196
>gnl|CDD|222183 pfam13506, Glyco_transf_21, Glycosyl transferase family 21. This
is a family of ceramide beta-glucosyltransferases -
EC:2.4.1.80.
Length = 171
Score = 133 bits (337), Expect = 1e-36
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 273 RMKEDTLLDMVNHLK-PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIP 331
R+ D L +++ L P VGLV P+ DR+GFAAALE + T + +
Sbjct: 43 RVPPDYLRELLAPLADPKVGLVTGPPYGADRRGFAAALEAAFLNTLAGVL---QALAGLG 99
Query: 332 CHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDV 391
GMS R+ + +GG + YLAED +AL G ++ +S +P Q SG
Sbjct: 100 FAVGMSMALRREALERIGGFEALADYLAEDYALGKALRAAGLRVVLSPRPVEQPSGRRTF 159
Query: 392 TSFRNRLSRWVK 403
+F R RW +
Sbjct: 160 RAFMARQLRWAR 171
Score = 131 bits (332), Expect = 7e-36
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 125 PNVDTSVFIGGQVVGVNPKINNMEPGYKA-AKYELILISDSGIRMKEDTLLDMVNHLK-P 182
P VD + G V GVNPK+NN+ A A+Y+L++ISDS +R+ D L +++ L P
Sbjct: 1 PGVDARLVAGPPV-GVNPKVNNLLQALDAKARYDLLVISDSDVRVPPDYLRELLAPLADP 59
Query: 183 GVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFM 242
VGLV P+ DR+GFAAALE + T + A
Sbjct: 60 KVGLVTGPPYGADRRGFAAALEAAFLNTLAGVLQALAGLGFA------------------ 101
Query: 243 PFTGMSTLTRKSIFDELGGIKTFGCYLAE 271
GMS R+ + +GG + YLAE
Sbjct: 102 --VGMSMALRREALERIGGFEALADYLAE 128
>gnl|CDD|132512 TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl
transferase protein HpnI. This family of genes include
a glycosyl transferase, group 2 domain (pfam00535) which
are responsible, generally for the transfer of
nucleotide-diphosphate sugars to substrates such as
polysaccharides and lipids. The member of this clade
from Acidithiobacillus ferrooxidans ATCC 23270
(AFE_0974) is found in the same locus as squalene-hopene
cyclase (SHC, TIGR01507) and other genes associated with
the biosynthesis of hopanoid natural products.
Similarly, in Ralstonia eutropha JMP134 (Reut_B4902)
this gene is adjacent to HpnAB, IspH and HpnH
(TIGR03470), although SHC itself is elsewhere in the
genome. Notably, this gene (here named HpnI) and three
others form a conserved set (HpnIJKL) which occur in a
subset of all genomes containing the SHC enzyme. This
relationship was discerned using the method of partial
phylogenetic profiling. This group includes Zymomonas
mobilis, the organism where the initial hopanoid
biosynthesis locus was described consisting of the genes
HpnA-E and SHC (HpnF). Continuing past SHC are found a
phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and
another radical SAM enzyme (ZMO0874), HpnH. Although
discontinuous in Z. mobilis, we continue the gene symbol
sequence with HpnIJKL. Hopanoids are known to feature
polar glycosyl head groups in many organisms.
Length = 373
Score = 109 bits (275), Expect = 4e-26
Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 69 YPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVD 128
+P V++LKPL G +P LY NL +F YP +++ F ++D DPA+ +V +L +P+ D
Sbjct: 40 WPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDAD 99
Query: 129 TSVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLK-PGVGLV 187
+ I + G N K++N+ A++++++I+DS I + D L +V L P VGLV
Sbjct: 100 IDLVIDARRHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLV 159
Score = 40.8 bits (96), Expect = 0.001
Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 21/228 (9%)
Query: 287 KPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFL--QIPCHTGMSTLTRKSI 344
P VGLV + GF + L + A L C G + R++
Sbjct: 153 DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFC-FGATMALRRAT 211
Query: 345 FDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDVTSFRNRLSRWVKL 404
+ +GG+ +LA+D + + LG ++ ++ + + RW +
Sbjct: 212 LEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRWSRT 271
Query: 405 RIAMAP----FTLVCEPLSECLILGAFASWAASFLFQIDPAVFYLVHILAWFLLDAILIS 460
A+ P + + +P+ ++ + A L A +L + A
Sbjct: 272 IRAVNPVGYAGSFITQPVPLAVLALLLGAAWAWPLV---AAALAARALLRLVMSRATGAP 328
Query: 461 IIQNGSLPFSKFHLIVCWLFREVLGPWVFFTSIWNPVIKWRTRTYKLR 508
+ LP R++L ++ S + + WR R +++
Sbjct: 329 LRAAWLLP-----------LRDLLSFAIWVASFFGSRVVWRGRRFRVD 365
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 72.0 bits (177), Expect = 3e-14
Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 18/199 (9%)
Query: 70 PGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDT 129
P V ++ P D L L + YP+ E+ ++ D + + +L YP+V
Sbjct: 1 PRVAVVVPTWNEDKVLGRTLRSILAQDYPRLEVIVVVDGSDDETLDVARELAAAYPDVRV 60
Query: 130 SVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLK-PGVGLVH 188
V + G K + +A K +L+++ D+ + DTL ++ GVG V
Sbjct: 61 HVVRRPRPPGPTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKGVGAVQ 120
Query: 189 QMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMS 248
F + + A L F R L P G
Sbjct: 121 GPVFVLNLRTAVAPLYALEFALRHLRFMALRRALG-----------------VAPLAGSG 163
Query: 249 TLTRKSIFDELGGIKTFGC 267
+L R+S+ +E+GG
Sbjct: 164 SLFRRSVLEEIGGFDPGFL 182
Score = 54.3 bits (131), Expect = 3e-08
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Query: 270 AEERMKEDTLLDMVNHLK-PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFL 328
A+ + DTL ++ GVG V F + + A L F R L
Sbjct: 95 ADSVVDPDTLRRLLPFFLSKGVGAVQGPVFVLNLRTAVAPLYALEFALRHLRFMALRRAL 154
Query: 329 QIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKI 375
+ G +L R+S+ +E+GG L ED L GW+
Sbjct: 155 GVAPLAGSGSLFRRSVLEEIGGFDPGFL-LGEDKELGLRLRRAGWRT 200
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 63.8 bits (155), Expect = 7e-11
Identities = 52/260 (20%), Positives = 97/260 (37%), Gaps = 20/260 (7%)
Query: 17 YLSLSSLTYTLSGFAVFFFVFWFGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTILK 76
L L G + + + + + RK + P V+++
Sbjct: 1 RLIDLLLELVFWGLILILLLILSIITLLLGYLLLVLPLSRPRKKLPKDADKLLPKVSVII 60
Query: 77 PLTGTDP-NLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGG 135
P +P L LE+ + YP+YE+ + D ++E+L +Y + V
Sbjct: 61 PAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGP-NFRVIYPE 119
Query: 136 QVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLK-PGVGLVHQMPFTW 194
+ G N G K AK ++++I D+ + D L ++V+ + P VG V P
Sbjct: 120 KKNGGKAGALNN--GLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIR 177
Query: 195 DRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKS 254
+R G QA YL+A + ++ + + +G S+ R+S
Sbjct: 178 NRPDP-----SNLLGRIQAIEYLSAFYFRLR-----AASK---GGLISFLSGSSSAFRRS 224
Query: 255 IFDELGGIKTFGCYLAEERM 274
+E+GG + E+
Sbjct: 225 ALEEVGGWLE--DTITEDAD 242
Score = 38.0 bits (88), Expect = 0.010
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 12/229 (5%)
Query: 267 CYLAEERMKEDTLLDMVNHLK-PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYL-- 323
A+ + D L ++V+ + P VG V P +R + L + + Y
Sbjct: 143 ILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRL 202
Query: 324 --AANFLQIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQP 381
A+ I +G S+ R+S +E+GG + ED L G+++ +
Sbjct: 203 RAASKGGLISFLSGSSSAFRRSALEEVGGWLE--DTITEDADLTLRLHLRGYRVVYVPEA 260
Query: 382 AWQNSGYCDVTSFRNRLSRWVKLRIAMAPFTLVCEPLSECLILGAFASWAASFLFQIDPA 441
+ + RW R + L+ P L LF +
Sbjct: 261 IVWTEAPETLKELWRQRLRW--ARGGL--QVLLLHPYLPALFRPLSGYRFILLLFSLLLP 316
Query: 442 VFYLVHILAWFLLDAILISIIQNGSLPFSKFHLIVCWLFREVLGPWVFF 490
+ + L + +LI + +L + ++ +L ++ P +
Sbjct: 317 LLLTLLFLLSIIPSLLLILLSGLLALLLA-NVILAAFLLILLIPPLLAL 364
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 44.5 bits (106), Expect = 9e-05
Identities = 46/179 (25%), Positives = 67/179 (37%), Gaps = 24/179 (13%)
Query: 20 LSSLTYTLSGFAVFFFVFWFGMWFVHLTAIFYSKYKLHRKVPLLPQEM--PYPGVTILKP 77
S+ L F F+ F +W V FY + H + P YPGV+IL P
Sbjct: 3 FFSVGELLLNFVFFYPFFMSILWIV-GGLYFYFLRERHWPLGENPPAQLKEYPGVSILVP 61
Query: 78 LTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQV 137
N+ + + YP YE+ + D ++++L + P + I
Sbjct: 62 CYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRL---RVIHLA- 117
Query: 138 VGVNP-KINNMEPGYKAAKYELILISDSGIRMKEDTLLD------MVNHLK--PGVGLV 187
N K N + G AA+ E ++ D D LLD MV H P VG V
Sbjct: 118 --ENQGKANALNTGAAAARSEYLVCIDG------DALLDPDAAAYMVEHFLHNPRVGAV 168
>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferases, which are involved in
bacterial capsule biosynthesis.
Length = 194
Score = 42.3 bits (100), Expect = 2e-04
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 270 AEERMKEDTLLDMVNHLK-PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFL 328
A+ + D L + N + P V L+ + + + L F + L L
Sbjct: 7 ADTVLPPDCLRLIANLMLSPEVALIQGPVTPRNVRNWLERLADLEFAEDHGKDRLFREAL 66
Query: 329 --QIPCHTGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELGWKI 375
+P L R+S E+GG ++ED FA L G+++
Sbjct: 67 GGVLPSVGSG-ALFRRSALQEVGGFDES--SVSEDFDFALRLRRAGYRV 112
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 38.4 bits (90), Expect = 0.009
Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 30/175 (17%)
Query: 27 LSGFAVFFFVFWFGMWFVHLTAIFY-----SKYKLHRKVPLLPQEMPYPGVTILKPLTGT 81
L F F+ +F W V ++Y K+ L R P E YPGV+IL P
Sbjct: 1 LFNFVFFYPLFMSIYWIV--GGVYYYFHWERKWPLPRTPPPPLDE--YPGVSILVPCYNE 56
Query: 82 DPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVN 141
N+ + + YP +EI + D ++++L + P + I N
Sbjct: 57 GANVEETISHLLALRYPNFEIIAINDGSKDNTAEILDRLAAQDPRL---RVIHLA---EN 110
Query: 142 P-KINNMEPGYKAAKYELILISDSGIRMKEDTLLD------MVNHLK--PGVGLV 187
K N + G AAKYE ++ D D LLD MV H P VG V
Sbjct: 111 QGKANALNTGLLAAKYEYLVCIDG------DALLDPDAAYWMVEHFLSNPRVGAV 159
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 34.0 bits (78), Expect = 0.097
Identities = 33/153 (21%), Positives = 47/153 (30%), Gaps = 16/153 (10%)
Query: 83 PNLYSNLETFFTMSYPKYEICFCLEDD--VDPAVPLVEKLCKKYPNVDTSVFIGGQVVGV 140
L LE+ +Y +EI DD D V + E+ K P V V + +G
Sbjct: 11 KYLEETLESLLNQTYKNFEIIVV--DDGSTDGTVEIAEEYAKNDPRV--RVIRLEENLG- 65
Query: 141 NPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL-KPGVGLV------HQMPFT 193
K G K A + I D+ + D L +V L K G +V
Sbjct: 66 --KAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIGSRVVINGETR 123
Query: 194 WDRKGFAAALEKTYFGTAQARIYLAANFLQIPC 226
+ L + L FL
Sbjct: 124 LYGRALRFELLLLLGKLGARSLGLKVLFLIGSN 156
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 33.8 bits (78), Expect = 0.14
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 84 NLYSNLETFFTMSYPKYEICFCLEDD--VDPAVPLVEK-LCKKYPNVDTSVFIGGQVVGV 140
NL L++ + YPK + L DD D V ++E K + + V +
Sbjct: 11 NLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQL---KILNNSRVSI 67
Query: 141 NPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVN-HLKPGVGLV 187
+ K N + KAAK + I+ +D+ + + LL V K +GLV
Sbjct: 68 SGKKNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLV 115
>gnl|CDD|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are
putative bacterial beta-(1,6)-glucosyltransferase.
NdvC_like proteins in this family are putative
bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium
japonicum synthesizes periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans during growth under
hypoosmotic conditions. Two genes (ndvB, ndvC) are
involved in the beta-(1, 3), beta-(1,6)-glucan
synthesis. The ndvC mutant strain resulted in synthesis
of altered cyclic beta-glucans composed almost entirely
of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans function for
osmoregulation. The ndvC mutation also affects the
ability of the bacteria to establish a successful
symbiotic interaction with host plant. Thus, the
beta-glucans may function as suppressors of a host
defense response.
Length = 236
Score = 33.9 bits (78), Expect = 0.17
Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 49/190 (25%)
Query: 89 LETFFTMSYPKYEICFCLEDDVDPAV--PLVEKLCKKYPNVDTSVFIGGQVVGVNPKINN 146
L++ + YP +E+ + D A+ P VE C + + F + +
Sbjct: 18 LDSLAALDYPNFEVIVIDNNTKDEALWKP-VEAHCAQLG--ERFRFFHVEPL-------- 66
Query: 147 MEPGYKAAKY-----------ELILISDSGIRMKEDTLLDMVNHLK-PGVGLVHQMP--- 191
PG KA E+I + D+ +++ D L +V P VG V Q P
Sbjct: 67 --PGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFV-QAPQDY 123
Query: 192 FTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLT 251
+ F Y G F I + N++ N+I G L
Sbjct: 124 RDGEESLFKRMCYAEYKG-----------FFDI---GMVSRNER--NAII--QHGTMCLI 165
Query: 252 RKSIFDELGG 261
R+S D++GG
Sbjct: 166 RRSALDDVGG 175
>gnl|CDD|226992 COG4645, COG4645, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 410
Score = 32.9 bits (75), Expect = 0.43
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 408 MAPFTLVCEPLSECLILGAFAS-WAASFLFQIDPAVFYLVHI------LAWFLLDAILIS 460
+AP L L+L W AS L Q P + YLV L+W L I I+
Sbjct: 169 LAPVLLKLLRGRLALVLAGSGLVWLASGLGQTAP-LNYLVPGRWFFNPLSWQFLFYIGIA 227
Query: 461 II----QNGSLPFSKFHLIVCWLFREVLGPWVFFTSIWNPVI 498
+ Q G LPFS + + + + + WVF +W +
Sbjct: 228 MGAHVRQGGILPFSPWLVGLAAAYLALAIFWVFM-PLWIITL 268
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 31.3 bits (71), Expect = 0.71
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 96 SYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAK 155
+YP +E+ + D + ++E+ KK P V I + G+ N G KAA+
Sbjct: 23 TYPNFEVIVVDDGSTDGTLEILEEYAKKDPRV--IRVINEENQGLAAARNA---GLKAAR 77
Query: 156 YELILISDSGIRMKEDTLLDMV--NHLKPGVGLVH 188
E IL D+ + D L +V P V
Sbjct: 78 GEYILFLDADDLLLPDWLERLVAELLADPEADAVG 112
>gnl|CDD|131470 TIGR02417, fruct_sucro_rep, D-fructose-responsive transcription
factor. Members of this family belong the lacI
helix-turn-helix family (pfam00356) of DNA-binding
transcriptional regulators. All members are from the
proteobacteria. Characterized members act as positive
and negative transcriptional regulators of fructose and
sucrose transport and metabolism. Sucrose is a
disaccharide composed of fructose and glucose;
D-fructose-1-phosphate rather than an intact sucrose
moiety has been shown to act as the inducer [Regulatory
functions, DNA interactions].
Length = 327
Score = 31.3 bits (71), Expect = 1.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 103 CFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQ 136
C + DDVD A L+E+L ++ D ++G Q
Sbjct: 156 CSVISDDVDAAAELIERLLSQHA--DEFWYLGAQ 187
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 30.3 bits (69), Expect = 1.4
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 150 GYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLVHQMPFTWDRKGFAAALEKTY 207
G + AK +++++ D+ ++ D L +V P VG V R G L +
Sbjct: 73 GLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV--RVRNGSENLLTRLQ 130
Query: 208 FGTAQARIYLAANFLQ-IPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGG 261
+ G + +G R+ E+GG
Sbjct: 131 ----AIEYLSIFRLGRRAQSALGG----------VLVLSGAFGAFRREALREVGG 171
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 30.9 bits (70), Expect = 1.7
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 335 GMSTLTRKSIFDELGGI-KTFGCYLAEDLFFARALSELGWKI-TISGQPAWQNSGY---- 388
G L R+ F+++GG + F Y ED+ + G+KI + + G
Sbjct: 169 GACLLIRREAFEKVGGFDERFFIYY-EDVDLCLRARKAGYKIYYVPDAIIYHKIGSSKGS 227
Query: 389 -CDVTSFRNRLSRWVKLRIAMAPFTLVCEPLSECLILGAFASWAASFLFQI 438
T + + + L+ PL ++ AF + I
Sbjct: 228 SILGTFYYHLRRNRIYFAKLNEKGLLLRSPL---RLILAFLRCLRALGVAI 275
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 30.2 bits (69), Expect = 2.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 341 RKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPA------WQNSGY 388
R+S+F+++GG L ED+ +R L LG ++ I P W+ +G
Sbjct: 143 RRSLFEQIGGFPDIP--LMEDIELSRRLRRLG-RLAILPAPVVTSARRWEKNGI 193
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 29.8 bits (68), Expect = 2.1
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 89 LETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNME 148
L++ +YP +E+ D VE L + +P V + G+ +G NN
Sbjct: 16 LDSLLAQTYPDFEVIVV---DNASTDGSVELLRELFPEV--RLIRNGENLGF-GAGNNQ- 68
Query: 149 PGYKAAKYELILISDSGIRMKEDTLLDMVNHL--KPGVGLV 187
G + AK + +L+ + ++ LL++++ P VG+V
Sbjct: 69 -GIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIV 108
>gnl|CDD|222345 pfam13727, CoA_binding_3, CoA-binding domain.
Length = 175
Score = 29.5 bits (67), Expect = 2.9
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 4 RQIAPTSVAMLLDYLSLSSLTYTLSG-FAVFFFVFWFGMWFVHLTAIFYSKYKLHRKV 60
R++ A L L L L+++L F+ + +WF + V L + R+
Sbjct: 16 RELGRVLQAWTLVLLLLLLLSFSLGDAFSRLWLAYWFVLGLVLLVLSRLLLRAVLRRW 73
>gnl|CDD|163564 TIGR03852, sucrose_gtfA, sucrose phosphorylase. In the forward
direction, this enzyme uses phosphate to cleave sucrose
into D-fructose + alpha-D-glucose 1-phosphate.
Characterized representatives from Streptococcus mutans
and Bifidobacterium adolescentis represent
well-separated branches of a molecular phylogenetic
tree. In S. mutans, the region including this gene has
been associated with neighboring transporter genes and
multiple sugar metabolism.
Length = 470
Score = 30.1 bits (68), Expect = 3.6
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 10/49 (20%)
Query: 158 LILISDS-GIRMKEDTLLDMV--NHLKPGVGLVHQMPF---TWDRKGFA 200
LI +DS G +KE L+ V N+ K VG VH +PF T DR GFA
Sbjct: 5 LITYADSLGKNLKE---LNKVLENYFKDAVGGVHLLPFFPSTGDR-GFA 49
>gnl|CDD|226433 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 29.5 bits (66), Expect = 4.5
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 233 NDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTFGCYLA 270
ND +P I P T M L + LG KT+ CY
Sbjct: 367 NDPSPGLIDKPLTAMRVLFHRI----LGAFKTWKCYGH 400
>gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family. PSI-BLAST, starting
with a urease alpha subunit, finds a large superfamily
of proteins, including a number of different enzymes
that act as hydrolases at C-N bonds other than peptide
bonds (EC 3.5.-.-), many uncharacterized proteins, and
the members of this family. Several genomes have
multiple paralogs related to this family. However, a set
of 17 proteins can be found, one each from 17 of the
first 20 genomes, such that each member forms a
bidirectional best hit across genomes with all other
members of the set. This core set (and one other
near-perfect member), but not the other paralogs, form
the seed for this model. Additionally, members of the
seed alignment and all trusted hits, but not all
paralogs, have a conserved motif DxHxH near the amino
end. The member from E. coli was recently shown to have
DNase activity [Unknown function, Enzymes of unknown
specificity].
Length = 252
Score = 29.1 bits (66), Expect = 5.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 349 GGIKTFGCYLAEDLFFARALSELGWKITISG 379
GG+ C+ D A+ L +LG+ I+ISG
Sbjct: 147 GGV--LHCF-TGDAELAKKLLDLGFYISISG 174
>gnl|CDD|223056 PHA03362, PHA03362, single-stranded binding protein UL29;
Provisional.
Length = 1189
Score = 29.6 bits (67), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 388 YCDVTSF---RNRLSRWVK-LRIAMAPFTLVCEPLSECLILGAFASWAA 432
C T+ R RL R+ LR + F + S+C +LG +A ++A
Sbjct: 507 ACAHTTLHRLRTRLPRFGAPLRGPIGVFGTMNSAYSDCDVLGNYAPYSA 555
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 29.6 bits (66), Expect = 6.1
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 68 PYPGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNV 127
P V I+ PL G D Y N+E FF P + E + L EKL
Sbjct: 285 PLIKVKIICPLKGADEIKYDNIE-FFPKKAPYVTLTKANEGSEEKEEKLKEKLLAA---- 339
Query: 128 DTSVFIGGQVVG--VNPKINNMEPG 150
I G ++ VN K NN E G
Sbjct: 340 ----LIHGLIISPEVNEKENNFEEG 360
>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 277
Score = 29.0 bits (65), Expect = 6.7
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 341 RKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDVTS 393
RK + EL G L+ F R+L E G I I+G AW+ +VTS
Sbjct: 186 RKVVLPELSPALLAGVALS----FTRSLGEFGAVIFIAGNIAWKT----EVTS 230
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 28.6 bits (65), Expect = 7.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 2 TVRQIAPTSVAMLLDYLSLSSLTY 25
+R A T V D +S +LT+
Sbjct: 240 NIRAYAETGV----DVISTGALTH 259
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 28.3 bits (64), Expect = 7.8
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 341 RKSIFDELGGIKTFGCYLAEDLFFARALSELGWKITISG 379
R+ +F+ELGG L ED+ R L G +
Sbjct: 144 RRELFEELGGFPEL--PLMEDVELVRRLRRRGRPALLPS 180
>gnl|CDD|168637 PRK06661, PRK06661, hypothetical protein; Provisional.
Length = 231
Score = 28.3 bits (63), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 14 LLDYLSLSSLTYT----LSGFAVFFFVFWFGMWFVHLT 47
++ YLSL TYT A F++++ FG+ F +T
Sbjct: 13 IMAYLSLDDHTYTHLSARPKNADFYYIYPFGLRFEEVT 50
>gnl|CDD|133034 cd04191, Glucan_BSP_ModH, Glucan_BSP_ModH catalyzes the elongation
of beta-1,2 polyglucose chains of glucan. Periplasmic
Glucan Biosynthesis protein ModH is a
glucosyltransferase that catalyzes the elongation of
beta-1,2 polyglucose chains of glucan, requiring a
beta-glucoside as a primer and UDP-glucose as a
substrate. Glucans are composed of 5 to 10 units of
glucose forming a highly branched structure, where
beta-1,2-linked glucose constitutes a linear backbone to
which branches are attached by beta-1,6 linkages. In
Escherichia coli, glucans are located in the periplasmic
space, functioning as regulator of osmolarity. It is
synthesized at a maximum when cells are grown in a
medium with low osmolarity. It has been shown to span
the cytoplasmic membrane.
Length = 254
Score = 28.4 bits (64), Expect = 8.3
Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 25/139 (17%)
Query: 72 VTILKPLTGTDPN-LYSNLETFF-----TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYP 125
I+ P+ DP +++ L + T ++ F L D DP + L E+ +
Sbjct: 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAA--WL 57
Query: 126 NVDTSVFIGGQVVGVNPKINNMEPGYKA-----------AKYELILISDSGIRMKEDTLL 174
++ + G++ + N G KA ++Y+ +++ D+ M DT++
Sbjct: 58 DLCEELGAQGRIYYRRRRENT---GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIV 114
Query: 175 DMVNHLK--PGVGLVHQMP 191
+V ++ P G++ P
Sbjct: 115 RLVRRMEANPRAGIIQTAP 133
>gnl|CDD|227079 COG4736, CcoQ, Cbb3-type cytochrome oxidase, subunit 3
[Posttranslational modification, protein turnover,
chaperones].
Length = 60
Score = 26.2 bits (58), Expect = 8.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 26 TLSGFAVFFFVFWFGMWFVHLTAIFYSKYKLHR 58
+ GFA + F ++F+ + Y K
Sbjct: 5 MMRGFADAWGTIAFTLFFIAVIYFAYRPGKKGE 37
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 28.6 bits (65), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 2 TVRQIAPTSVAMLLDYLSLSSLT 24
+R A T V DY+S+ +LT
Sbjct: 239 NIRAYAETGV----DYISVGALT 257
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 28.2 bits (64), Expect = 8.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 83 PNLYSNLETFFTMSYPKYEICFCLEDD--VDPAVPLVEKLCKKYPNV 127
P LY L+ YEI F DD D + ++ +L + P V
Sbjct: 13 PELYERLKAVLESLGYDYEIIFV--DDGSTDRTLEILRELAARDPRV 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.458
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,641,375
Number of extensions: 2871669
Number of successful extensions: 3952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3921
Number of HSP's successfully gapped: 84
Length of query: 539
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 437
Effective length of database: 6,413,494
Effective search space: 2802696878
Effective search space used: 2802696878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)