RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11373
(539 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 63/454 (13%), Positives = 128/454 (28%), Gaps = 111/454 (24%)
Query: 21 SSLTY-TLSGFAV---FFF-VFWFGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTIL 75
+ + + V F +FW + V + Q++ Y
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNL----------KNCNSPETVLEMLQKLLYQIDPNW 213
Query: 76 KPLTGTDPNLYSNLETFFT-----MSYPKYEICFCLEDDV-DPAVPLVEKL---CKKYPN 126
+ N+ + + + YE C + +V + CK
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCK---- 267
Query: 127 V-----DTSV--FIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNH 179
+ V F+ + +++ + + +L+ + + L V
Sbjct: 268 ILLTTRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLT 324
Query: 180 LKP----GVG-LVHQMPFTWDR-------------KGFAAALEKTYFGTAQARIYLAANF 221
P + + TWD + LE + + + F
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVF 381
Query: 222 ---LQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGGIKTF---GCYLAEERMK 275
IP + S M ++ L + S+ ++ T YL E ++K
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYL-ELKVK 438
Query: 276 EDTLLDMVNHLKPGVGLV--HQMPFTWDRKGFAAALEKTYF---------GTAQA----- 319
+ + H +V + +P T+D YF
Sbjct: 439 LENEYAL--HRS----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 320 --RIYLAANFLQ--IPCHTGMSTLTRKSIFDELGGIKTFGCYLAE-DLFFARALSELGWK 374
++L FL+ I H + SI + L +K + Y+ + D + R ++ +
Sbjct: 493 FRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-D 550
Query: 375 ITISGQPAWQNSGYCDVTSFRNRLSRWVKLRIAM 408
+ S Y D+ LRIA+
Sbjct: 551 FLPKIEENLICSKYTDL------------LRIAL 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 83/502 (16%), Positives = 140/502 (27%), Gaps = 156/502 (31%)
Query: 72 VTILKPLTGTDPNLYSN---LETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVD 128
+L P + L+ F P+ F +D +P P E L K+
Sbjct: 18 HVLLVP-----TASFFIASQLQEQFNKILPEPTEGFAADD--EPTTP-AE-LVGKFLG-- 66
Query: 129 TSVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVH 188
++ V EP K +++ +L + + E+ L+ + +H
Sbjct: 67 ---YVSSLV----------EPS-KVGQFDQVL--NLCLTEFENCYLEGND--------IH 102
Query: 189 QMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCHTGCTLNDKAPNSIFMPF---- 244
AA L + T L N++ DK NS F
Sbjct: 103 ---------ALAAKLLQENDTTLVKTKELIKNYITA-RIMAKRPFDKKSNSAL--FRAVG 150
Query: 245 TGMSTLTRKSIFDELGGIKTFGCYLAEER--------MKEDTLLDMVNHLKPGVGLVHQM 296
G + L +IF GG Y E R + D + L +
Sbjct: 151 EGNAQLV--AIF---GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 297 PFTWDRKGF---------AAALEKTYFGTAQAR---IYL--AANFLQIPCHTGMSTLTRK 342
+ +G + +K Y + I + A+++ + T
Sbjct: 206 EKVF-TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-VTAKL--LGFTPG 261
Query: 343 SIFDELGGIKTFGCYLAEDLFFARALSELGWKITISGQPAWQNSGYCDVTSFRNRLSR-- 400
+ L G G ++ L A A I+ +W+ SF + +
Sbjct: 262 ELRSYLKG--ATGH--SQGLVTAVA---------IAETDSWE--------SFFVSVRKAI 300
Query: 401 ----WVKLR--IAMAPFTLVCEPLSECLILG-AFASWAASF----LFQIDPAVFYLVHIL 449
++ +R A +L L + L S S Q+ V L
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 450 AWFLLDAILISIIQNG-----------SL---------------------PFSKFHLIVC 477
+ IS++ NG SL PFS+ L
Sbjct: 361 P--AGKQVEISLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 478 WLFREVLGPWVFFTSIWNPVIK 499
F V P F + + P
Sbjct: 418 NRFLPVASP--FHSHLLVPASD 437
Score = 31.6 bits (71), Expect = 0.83
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 41/142 (28%)
Query: 39 FGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTI----LK-PL----TGTD-----PN 84
F F+ + + F+S L L+ +++ V+ ++ P+ G+D +
Sbjct: 416 FSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 85 LYSNL-ETFFTM---------SYPKYEICFCLEDDVDP-AVPLVEKLCKKYPNVD---TS 130
+ + + + + + F P + L + N D
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDF------GPGGASGLGVLTHR--NKDGTGVR 526
Query: 131 VFIGGQVVGVNPKINNMEPGYK 152
V + G + +NP + + G+K
Sbjct: 527 VIVAG-TLDINP---DDDYGFK 544
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 43.4 bits (102), Expect = 2e-04
Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 36/229 (15%)
Query: 37 FWFGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTILKPLTGTDPNLYSNLETFFTMS 96
V L + ++ P V+I P + +E+ +
Sbjct: 342 AAGKNITVQLLQQKVPYFYRKKEKIESATLKRVPLVSIYIPAYNCSKYIVRCVESALNQT 401
Query: 97 YPKYEICFCLEDD--VDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAA 154
E+C C DD D + ++++ +P V FI + G+ N +
Sbjct: 402 ITDLEVCIC--DDGSTDDTLRILQEHYANHPRV---RFISQKNKGIGSASNT---AVRLC 453
Query: 155 KYELILISDSGIRMKEDTLLDMVNHLK--PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQ 212
+ I DS ++ D + ++ + + V+ DR+G + Y
Sbjct: 454 RGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREG--NLISNGYNWPIY 511
Query: 213 ARIYLAANFLQIPCHTGCTLNDKAPNSIFMPFTGMSTLTRKSIFDELGG 261
+R L + I H + ++ G
Sbjct: 512 SREKLTSAM--ICHHF--------------------RMFTARAWNLTEG 538
Score = 35.7 bits (82), Expect = 0.045
Identities = 34/236 (14%), Positives = 61/236 (25%), Gaps = 39/236 (16%)
Query: 50 FYSKYKLHRKVPLLPQEMPYPGVTILKPLTGTDPNLYSNLETFFT---------MSYPKY 100
+ K +++ G++I+ P Y N + Y
Sbjct: 73 YVWAGKRKELDDYPRKQLIIDGLSIVIPT-------Y-NRAKILAITLACLCNQKTIYDY 124
Query: 101 EICFCLEDD--VDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYEL 158
E+ DD + +V + G + N+ G +AAKY
Sbjct: 125 EVIVA--DDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAV---RNL--GLRAAKYNY 177
Query: 159 ILISDSGIRMKEDTLLDMVNHLK--PGVGLVHQMPFTWDRKG-FAAALEKTYFGTAQARI 215
+ I D + + + L V L+ + K + L + I
Sbjct: 178 VAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEI 237
Query: 216 YLAANFLQIPCHTGC----------TLNDKAPNSIFMPFTGMSTLTRKSIFDELGG 261
T N + N+ F F+G + K G
Sbjct: 238 ITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGW 293
Score = 33.4 bits (76), Expect = 0.22
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 276 EDTLLDMVNHLK--PGVGLVHQMPFTWDRKGFAAALEKTYFGTAQARIYLAANFLQIPCH 333
D + ++ + + V+ DR+G + Y +R L + I H
Sbjct: 469 PDAVELCLDEFRKDLSLACVYTTNRNIDREG--NLISNGYNWPIYSREKLTSAM--ICHH 524
Query: 334 TGMSTLTRKSIFDELGGIKTFGCYLAEDLFFARALSELG 372
M ++ G A D LSE+G
Sbjct: 525 FRM---FTARAWNLTEGFNE-SISNAVDYDMYLKLSEVG 559
Score = 28.8 bits (64), Expect = 5.6
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 323 LAANFLQIPCHTGMSTLTRKSIFDELGGI-KTFGCYLAEDLFFARALSELGWKI 375
L +G + K G + F + ED F L G
Sbjct: 266 LRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYF 319
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 417 PLSECLILGAFASWAASFLFQIDPAVFYLVHILAWFLLDAILISIIQNGSLPFSKFH 473
SE L+ G+ A +DP ++ L I + F
Sbjct: 98 VASELLVRGSDLCLAPMVECVLDP-----TLSGSYHELKK---WIYEEDLTLFGVTL 146
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase;
HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae}
SCOP: a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 29.2 bits (65), Expect = 4.3
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 75 LKPLTGTDPN-----------LYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK 123
P+ T N + +++T M E ++ + + +
Sbjct: 30 YGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDF 89
Query: 124 YPNVDTSVF 132
+ + +VF
Sbjct: 90 DIDAEVNVF 98
>1bcp_F Pertussis toxin; ADP-ribosyltransferase, transferase, whooping
cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP:
b.40.2.1 PDB: 1prt_F 1pto_F*
Length = 99
Score = 27.3 bits (60), Expect = 4.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 40 GMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPG 71
WF + S Y L ++ L ++ PYPG
Sbjct: 50 DTWFDTMLGFAISAYALKSRIALTVEDSPYPG 81
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 6.8
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 153 AAKYELILISDSGIRMKEDTLLDMVNHLKPG----VGLVHQMPFTWDRKGFAAAL 203
AKYE ++ SGIR+ E L + N K V + + K A
Sbjct: 891 KAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQF 945
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 28.3 bits (64), Expect = 7.3
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 15 LDYLSLSSLTYTLSG 29
L YL L T TLS
Sbjct: 368 LGYLGLDRSTPTLSP 382
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 28.3 bits (63), Expect = 7.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 17/50 (34%)
Query: 238 NSIFMPFTGMSTLTRKSIFDELGG--------IKTFGCYLAEERMKEDTL 279
NS+F+ F G ++FD G ++ G A++R++ED L
Sbjct: 170 NSMFLGFDG-------TLFDYFNGYEDLKNKKVRFVGH--AKQRIQEDYL 210
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 27.9 bits (63), Expect = 7.7
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 4/23 (17%)
Query: 2 TVRQIAPTSVAMLLDYLSLSSLT 24
+ Q + D +S+ LT
Sbjct: 257 NLPQFCGPHI----DVISMGMLT 275
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 28.3 bits (64), Expect = 9.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 15 LDYLSLSSLTYTLSG 29
LDYL+LS TLSG
Sbjct: 191 LDYLTLSRSAGTLSG 205
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 27.9 bits (63), Expect = 9.1
Identities = 4/23 (17%), Positives = 8/23 (34%), Gaps = 4/23 (17%)
Query: 2 TVRQIAPTSVAMLLDYLSLSSLT 24
+ + + D S SS+
Sbjct: 262 NLEEYLCDDI----DIYSTSSIH 280
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 27.9 bits (63), Expect = 9.2
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 4/23 (17%)
Query: 2 TVRQIAPTSVAMLLDYLSLSSLT 24
V +V D +S S LT
Sbjct: 253 NVSLYDFETV----DVISSSRLT 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.458
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,707,095
Number of extensions: 534410
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 29
Length of query: 539
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 441
Effective length of database: 3,965,535
Effective search space: 1748800935
Effective search space used: 1748800935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.3 bits)