RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11373
         (539 letters)



>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
           (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 265

 Score = 30.0 bits (66), Expect = 0.67
 Identities = 10/113 (8%), Positives = 24/113 (21%), Gaps = 7/113 (6%)

Query: 70  PGVTILKPLTGTDPNLYSNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDT 129
              T++         L   L  +  +      I             L   L      V  
Sbjct: 3   DSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIF 62

Query: 130 SVFIGGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLKP 182
                 ++             +   +   +L+ D    +    L+   +  + 
Sbjct: 63  KPQTANKMRNRL-------QVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQ 108


>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella
          pertussis [TaxId: 520]}
          Length = 98

 Score = 27.3 bits (60), Expect = 1.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 40 GMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPG 71
            WF  +     S Y L  ++ L  ++ PYPG
Sbjct: 49 DTWFDTMLGFAISAYALKSRIALTVEDSPYPG 80


>d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium
           acetobutylicum [TaxId: 1488]}
          Length = 109

 Score = 26.7 bits (59), Expect = 3.4
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 134 GGQVVGVNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHL 180
           G  ++     I   E GY     + ++I+DS +  ++  L + +   
Sbjct: 46  GNPIIDFRNNIIIFEEGYDF---DALVINDSNLYPEDYDLTERLERF 89


>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 61

 Score = 25.5 bits (56), Expect = 3.6
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 6/37 (16%)

Query: 87  SNLETFFTMSYPKYEICFCLEDDVDPAVPLVEKLCKK 123
             +E   TM     + C      ++P    ++ L K 
Sbjct: 29  PRVEIIATMKKKGEKRC------LNPESKAIKNLLKA 59


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 27.6 bits (60), Expect = 4.5
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 329 QIPCHTGMSTLTRKSIFDELGGIKT-FGCYLAEDLFFARALSELGWKI 375
           + P   G      +  F E+G        +  E+L  +  + + G  +
Sbjct: 193 RTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTL 240



 Score = 26.8 bits (58), Expect = 7.7
 Identities = 19/169 (11%), Positives = 40/169 (23%), Gaps = 4/169 (2%)

Query: 94  TMSYPKYEICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKA 153
           +  +   EI    +      +    +   K   V   V    Q  G+             
Sbjct: 49  SPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKG---AAV 105

Query: 154 AKYELILISDSGIRMKEDTLLDMVNHLKPGVGLVHQMPFTWDRKGFAAALEKTYFGTAQA 213
           ++ ++I   D+        L  ++  +K     V               +  +       
Sbjct: 106 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGF 165

Query: 214 RIYLAANFLQIPCHTGCTLNDKAPNSIFMP-FTGMSTLTRKSIFDELGG 261
              L   +  +P              +  P   G      +  F E+G 
Sbjct: 166 NWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGT 214


>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
           {Megasphaera elsdenii [TaxId: 907]}
          Length = 232

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 24  TYTLSGFAVFFFVFWFGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTILKPLTGTDP 83
           TYTL+G     F+   G   +++      K K +  +     E   PG T  K       
Sbjct: 151 TYTLNG--SKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGI 208

Query: 84  NLYSNLETFFT 94
           +    +E  F 
Sbjct: 209 HTSQTMELVFQ 219


>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 137

 Score = 26.1 bits (57), Expect = 7.0
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 102 ICFCLEDDVDPAVPLVEKLCKKYPNVDTSVFIGGQVVGVNPKINNMEPGYKAAKYELILI 161
           +   L    +     + + C +       +++GG +V       ++E  +K   Y+ +  
Sbjct: 59  LVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYA 118

Query: 162 SDSGIRMKEDTLLDMVNHLK 181
             +     E  + D+   L 
Sbjct: 119 PGTPP---EVGIADLKKDLN 135


>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
           {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 26.2 bits (57), Expect = 8.8
 Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 140 VNPKINNMEPGYKAAKYELILISDSGIRMKEDTLLDMVNHLKPGV 184
              K N +         + +++++SGI+   +     +  L+  V
Sbjct: 185 FEIKKNVLWELLPLVPDDTVVVAESGIKDPRE-----LKDLRGKV 224


>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain
          {Flavobacterium sp. 92 [TaxId: 197856]}
          Length = 93

 Score = 25.1 bits (55), Expect = 9.5
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 38 WFGMWFVHLTAIFYSKYKLHRKVPLLPQEMPYPGVTILKPLTGTDPN-LYSNLET 91
          W GM    L  + + +      +  +   + YPGV ++      + N L+ +LE 
Sbjct: 13 WAGMQHKGLQLMVHGR-----DIGRMEAALDYPGVRLVSTTRVPNANYLFVDLEI 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,160,651
Number of extensions: 105629
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 15
Length of query: 539
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 449
Effective length of database: 1,171,896
Effective search space: 526181304
Effective search space used: 526181304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)