BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11379
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/185 (57%), Positives = 129/185 (69%), Gaps = 1/185 (0%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
I IEDFP+FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYE
Sbjct: 133 FINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYE 192
Query: 173 SKKFPSLSLKGAFGPDA-IYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231
S FP L KG++ P IYT + +K VIEYARLRGIRV+ E DTPGHT S PG+P +
Sbjct: 193 SFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLL 252
Query: 232 CHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPE 291
C E GP++P+ N T +F+ F E+ FP+ Y+HLGGDEVDF CW+ NPE
Sbjct: 253 TPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPE 312
Query: 292 IKAFM 296
I+ FM
Sbjct: 313 IQDFM 317
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
I IEDFP+FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYE
Sbjct: 133 FINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYE 192
Query: 66 SKKFPSLSLKGAFGPDA-IYTEKMIKKVGLGAR 97
S FP L KG++ P IYT + +K+V AR
Sbjct: 193 SFTFPELMRKGSYNPVTHIYTAQDVKEVIEYAR 225
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 125/183 (68%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 148 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 207
Query: 174 KKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
FP LS KG++ +YT ++ VIEYARLRGIRV+PE DTPGHT S G +
Sbjct: 208 ITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTP 267
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 293
C R GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+
Sbjct: 268 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 327
Query: 294 AFM 296
FM
Sbjct: 328 DFM 330
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 64/91 (70%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 148 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 207
Query: 67 KKFPSLSLKGAFGPDAIYTEKMIKKVGLGAR 97
FP LS KG++ +YT ++ V AR
Sbjct: 208 ITFPELSNKGSYSLSHVYTPNDVRMVIEYAR 238
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 125/183 (68%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 140 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 199
Query: 174 KKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
FP LS KG++ +YT ++ VIEYARLRGIRV+PE DTPGHT S G +
Sbjct: 200 ITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTP 259
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 293
C R GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+
Sbjct: 260 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 319
Query: 294 AFM 296
FM
Sbjct: 320 DFM 322
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 64/91 (70%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 140 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 199
Query: 67 KKFPSLSLKGAFGPDAIYTEKMIKKVGLGAR 97
FP LS KG++ +YT ++ V AR
Sbjct: 200 ITFPELSNKGSYSLSHVYTPNDVRMVIEYAR 230
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 125/183 (68%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 189 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 248
Query: 174 KKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
FP LS KG++ +YT ++ VIEYARLRGIRV+PE DTPGHT S G +
Sbjct: 249 ITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTP 308
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 293
C R GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+
Sbjct: 309 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 368
Query: 294 AFM 296
FM
Sbjct: 369 DFM 371
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 64/91 (70%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 189 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 248
Query: 67 KKFPSLSLKGAFGPDAIYTEKMIKKVGLGAR 97
FP LS KG++ +YT ++ V AR
Sbjct: 249 ITFPELSNKGSYSLSHVYTPNDVRMVIEYAR 279
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 125/183 (68%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 140 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 199
Query: 174 KKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
FP LS KG++ +YT ++ VIEYARLRGIRV+PE DTPGHT S G +
Sbjct: 200 ITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTP 259
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 293
C R GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+
Sbjct: 260 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 319
Query: 294 AFM 296
FM
Sbjct: 320 DFM 322
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 64/91 (70%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S
Sbjct: 140 INESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQS 199
Query: 67 KKFPSLSLKGAFGPDAIYTEKMIKKVGLGAR 97
FP LS KG++ +YT ++ V AR
Sbjct: 200 ITFPELSNKGSYSLSHVYTPNDVRMVIEYAR 230
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
++R I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+
Sbjct: 178 MVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFV 237
Query: 173 SKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC 232
+ K P+L GA P +YT+ I+ V+ + RG+RV+PE D P H G
Sbjct: 238 TTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGE---GWQDTDL 294
Query: 233 HCPHRVE------GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYV-HLGGDEVDFFC 285
+ E G+ G L+PTK+ ++ D+++++ + F + + H+GGDEV C
Sbjct: 295 TVCFKAEPWKSYCGEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEAC 354
Query: 286 WEQNPEIKAFM 296
W + I+ FM
Sbjct: 355 WNSSDSIQNFM 365
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
++R I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+
Sbjct: 178 MVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFV 237
Query: 66 SKKFPSLSLKGAFGPDAIYTEKMIKKV 92
+ K P+L GA P +YT+ I++V
Sbjct: 238 TTKRPNLYKFGALSPQKVYTKAAIREV 264
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
++R I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+
Sbjct: 175 MVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFV 234
Query: 173 SKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC 232
+ K P+L GA P +YT+ I+ V+ + RG+RV+PE D P H G
Sbjct: 235 TTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGE---GWQDTDL 291
Query: 233 HCPHRVE-GKTF-----VGPLDPTKNVTLDFVRDLFTELGQRFPESYV-HLGGDEVDFFC 285
+ E K++ G L+PTK+ ++ D+++++ + F + + H+GGDEV C
Sbjct: 292 TVCFKAEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEAC 351
Query: 286 WEQNPEIKAFM 296
W + I+ FM
Sbjct: 352 WNSSDSIQNFM 362
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
++R I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+
Sbjct: 175 MVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFV 234
Query: 66 SKKFPSLSLKGAFGPDAIYTEKMIKKV 92
+ K P+L GA P +YT+ I++V
Sbjct: 235 TTKRPNLYKFGALSPQKVYTKAAIREV 261
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 4/188 (2%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
++R I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+
Sbjct: 175 MVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHWHITDSQSFPFV 234
Query: 173 SKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC 232
+ K P+L GA P +YT+ I+ V+ + RG+RV+PE D P H C
Sbjct: 235 TTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDTDLTVC 294
Query: 233 HCPHRVEGKTFV---GPLDPTKNVTLDFVRDLFTELGQRFPESYV-HLGGDEVDFFCWEQ 288
+ G L+PTK+ ++ D+++++ + F + + H+GGDEV CW
Sbjct: 295 FKAEPWKSYCVAPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNS 354
Query: 289 NPEIKAFM 296
+ I+ FM
Sbjct: 355 SDSIQNFM 362
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
++R I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+
Sbjct: 175 MVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHWHITDSQSFPFV 234
Query: 66 SKKFPSLSLKGAFGPDAIYTEKMIKKV 92
+ K P+L GA P +YT+ I++V
Sbjct: 235 TTKRPNLYKFGALSPQKVYTKAAIREV 261
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 8/187 (4%)
Query: 104 STLVPFLFQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHL 163
+T+V + +I I D P++ +RGL++D +RH+ + +K+Q+D+ S K+N H HL
Sbjct: 161 NTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHL 220
Query: 164 VDDQSFPYESKKFPSLSLKGA-----FGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218
DDQ + E K +P L G+ GP YT++ K ++ YA R I VIPEID PG
Sbjct: 221 SDDQGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPG 280
Query: 219 HTDSMEPGMPQIHCHCPHR-VEGKTFVG--PLDPTKNVTLDFVRDLFTELGQRFPESYVH 275
HT++ +++ + + T VG L P +T FV D+ +EL P Y+H
Sbjct: 281 HTNAALASYGELNPDGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIH 340
Query: 276 LGGDEVD 282
LGGDE +
Sbjct: 341 LGGDESN 347
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
+I I D P++ +RGL++D +RH+ + +K+Q+D+ S K+N H HL DDQ + E
Sbjct: 170 VIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIE 229
Query: 66 SKKFPSL 72
K +P L
Sbjct: 230 IKSWPDL 236
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 8/177 (4%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
++ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 145 LVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIA 204
Query: 173 SKKFPSLSLKGAF-----GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGM 227
+P L+ G GP YT+ K ++ YA R + V+PEID PGHT++
Sbjct: 205 IDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASY 264
Query: 228 PQIHCHC---PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 281
+++C P K L K+VT DFV D+ EL P Y+H+GGDE
Sbjct: 265 AELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEA 321
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
++ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 145 LVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIA 204
Query: 66 SKKFPSLSLKGAF-----GPDAIYTEKMIKKV 92
+P L+ G GP YT+ K++
Sbjct: 205 IDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 236
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 8/177 (4%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
++ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 145 LVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIA 204
Query: 173 SKKFPSLSLKGAF-----GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGM 227
+P L+ G GP YT+ K ++ YA R + V+PEID PGHT++
Sbjct: 205 IDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASY 264
Query: 228 PQIHCHC---PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 281
+++C P K L K+VT DFV D+ EL P Y+H+GG+E
Sbjct: 265 AELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEA 321
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
++ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 145 LVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIA 204
Query: 66 SKKFPSLSLKGAF-----GPDAIYTEKMIKKV 92
+P L+ G GP YT+ K++
Sbjct: 205 IDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 236
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 8/177 (4%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
++ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 145 LVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIA 204
Query: 173 SKKFPSLSLKGAF-----GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGM 227
+P L+ G GP YT+ K ++ YA R + V+PEID PGHT++
Sbjct: 205 IDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASY 264
Query: 228 PQIHCHC---PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 281
+++C P K L K+VT DFV D+ EL P Y+H+GG E
Sbjct: 265 AELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEA 321
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
++ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 145 LVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIA 204
Query: 66 SKKFPSLSLKGAF-----GPDAIYTEKMIKKV 92
+P L+ G GP YT+ K++
Sbjct: 205 IDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 236
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 111 FQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP 170
+ + RV ++ED P+F +RG +D +RH+ P + + +++ + +KLNVLH HL DDQ +
Sbjct: 125 WSVPRV-SVEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWR 183
Query: 171 YESKKFPSLSLKGAFGPDA-----------------IYTEKMIKSVIEYARLRGIRVIPE 213
+ ++P L+ GA+ ++ YT+ ++ ++ +A R I VIPE
Sbjct: 184 XQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPE 243
Query: 214 IDTPGHTDSMEPGMPQIH---CHCPHRVEGKTFVGPLDPTKNV---TLDFVRDLFTELGQ 267
ID PGH+ + P++ VE T G + V +L+F R++ E+ +
Sbjct: 244 IDVPGHSQAAIAAYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVE 303
Query: 268 RFPESYVHLGGDEV 281
FP ++ LGGDEV
Sbjct: 304 IFPSPWISLGGDEV 317
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 11 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 70
++ED P+F +RG +D +RH+ P + + +++ + +KLNVLH HL DDQ + + ++P
Sbjct: 131 SVEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYP 190
Query: 71 SLSLKGAF 78
L+ GA+
Sbjct: 191 KLTETGAW 198
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 27/163 (16%)
Query: 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 180
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+
Sbjct: 307 DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELT 366
Query: 181 LKG-----------------AFGPD---AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220
G GPD ++ + +I+YA+ R I VIPEID P H
Sbjct: 367 EVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
Query: 221 D----SMEPGMPQIHCHCPHRVEGKTF--VGPLDPTKNVTLDF 257
SME ++H + E F V P D + ++ F
Sbjct: 427 RAAVVSMEARYKKLHAAGKEQ-EANEFRLVDPTDTSNTTSVQF 468
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 14 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 73
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+
Sbjct: 307 DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELT 366
Query: 74 LKGA 77
G
Sbjct: 367 EVGG 370
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 24/136 (17%)
Query: 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 180
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+
Sbjct: 307 DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELT 366
Query: 181 LKG-----------------AFGPD---AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220
G GPD ++ + +I+YA+ R I VIPEID P H
Sbjct: 367 EVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
Query: 221 D----SMEPGMPQIHC 232
SME ++H
Sbjct: 427 RAAVVSMEARYKKLHA 442
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 14 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 73
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+
Sbjct: 307 DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELT 366
Query: 74 LKGA 77
G
Sbjct: 367 EVGG 370
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 24/136 (17%)
Query: 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 180
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+
Sbjct: 307 DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELT 366
Query: 181 LKG-----------------AFGPD---AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220
G GPD ++ + +I+YA+ R I VIPEID P H
Sbjct: 367 EVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
Query: 221 D----SMEPGMPQIHC 232
SME ++H
Sbjct: 427 RAAVVSMEARYKKLHA 442
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 14 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 73
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+
Sbjct: 307 DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELT 366
Query: 74 LKGA 77
G
Sbjct: 367 EVGG 370
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 95/195 (48%), Gaps = 27/195 (13%)
Query: 129 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD 188
GL++D +RH+ + IK +D +S + N LH H D +++ ES + G D
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 189 AIY----------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSM------EPGMPQIHC 232
IY + + + + YA+ +GI +IPE+D+P H ++ + G+ +
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQG 139
Query: 233 HCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLGGDEVDFFCWEQNP 290
+V+ + +D T ++ F++ L +E+ F ++ + H+GGDE + E N
Sbjct: 140 LKSRQVDDE-----IDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSV-ESNH 193
Query: 291 EIKAFMSSGDEVDFF 305
E F++ +++ +F
Sbjct: 194 E---FITYANKLSYF 205
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 22 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD 81
GL++D +RH+ + IK +D +S + N LH H D +++ ES + G D
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 82 AIYTEKMIKKVGLGARKM 99
IY K L R++
Sbjct: 80 GIYINPYTGKPFLSYRQL 97
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 132 VDGSRHYLPIKAIKKQLDIMS---YNKLNVLHWH-----LVDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D S Y+ +++L + L+DD + K + S +K
Sbjct: 32 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 91
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G A Y T+ + +IEYA+ + I +IP I++PGH D+M M ++
Sbjct: 92 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 151
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDL 261
P K +D ++FV+ L
Sbjct: 152 NPQAHFDKVSKTTMDLKNEEAMNFVKAL 179
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 132 VDGSRHYLPIKAIKKQLDIMS---YNKLNVLHWH-----LVDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D S Y+ +++L + L+DD + K + S +K
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G A Y T+ + +IEYA+ + I +IP I++PGH D+M M ++
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDL 261
P K +D ++FV+ L
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKAL 162
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 132 VDGSRHYLPIKAIKKQLDIMS---YNKLNVLHWH-----LVDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D S Y+ +++L + L+DD + K + S +K
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G A Y T+ + +IEYA+ + I +IP I++PGH D+M M ++
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDL 261
P K +D ++FV+ L
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKAL 162
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 132 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHW--------HLVDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D + LH ++DD S K + S +K
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G + Y TE + +I YA+ +GI +IP +++PGH D++ M ++
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 234 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 271
P+ GK +D + F + L + F +
Sbjct: 132 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK 170
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 132 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHW--------HLVDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D + LH ++DD S K + S +K
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G + Y TE + +I YA+ +GI +IP +++PGH D++ M ++
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 234 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 271
P+ GK +D + F + L + F +
Sbjct: 132 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK 170
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 132 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHW--------HLVDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D + LH ++DD S K + S +K
Sbjct: 32 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 91
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G + Y TE + +I YA+ +GI +IP +++PGH D++ M ++
Sbjct: 92 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 151
Query: 234 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 271
P+ GK +D + F + L + F +
Sbjct: 152 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK 190
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 19/159 (11%)
Query: 132 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHL--------VDDQSFPYESKKFPSLSLKG 183
+D R Y + +K+ +D + LH + +DD S K + S +K
Sbjct: 17 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFXLDDXSITANGKTYASDDVKR 76
Query: 184 AF--GPDAIY--------TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 233
A G + Y TE +I YA+ +GI +IP +++PGH D++ ++
Sbjct: 77 AIEKGTNDYYNDPNGNHLTESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKELGIQ 136
Query: 234 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 271
P+ GK +D + F + L + F +
Sbjct: 137 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK 175
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 122 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL 181
+ + H+G+++ S Y IK ++D + +NK L + F +S LSL
Sbjct: 6 YEKMLHKGMIIKNSNVYEKIK----EIDTIIFNKTGTLTYGTPIVTQFIGDS-----LSL 56
Query: 182 KGAFGPDAIYTEKMIKSVIEYARLRGIRVI 211
A +A+ + + K++++YA+ +G++++
Sbjct: 57 AYAASVEALSSHPIAKAIVKYAKEQGVKIL 86
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 122 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL 181
+ + H+G+++ S Y IK ++D + ++K L + F +S LSL
Sbjct: 6 YEKMLHKGMIIKNSNVYEKIK----EIDTIIFDKTGTLTYGTPIVTQFIGDS-----LSL 56
Query: 182 KGAFGPDAIYTEKMIKSVIEYARLRGIRVI 211
A +A+ + + K++++YA+ +G++++
Sbjct: 57 AYAASVEALSSHPIAKAIVKYAKEQGVKIL 86
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 122 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL 181
+ + H+G+++ S Y IK ++D + + K L + F +S LSL
Sbjct: 6 YEKMLHKGMIIKNSNVYEKIK----EIDTIIFEKTGTLTYGTPIVTQFIGDS-----LSL 56
Query: 182 KGAFGPDAIYTEKMIKSVIEYARLRGIRVI 211
A +A+ + + K++++YA+ +G++++
Sbjct: 57 AYAASVEALSSHPIAKAIVKYAKEQGVKIL 86
>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase
pdb|1KOL|B Chain B, Crystal Structure Of Formaldehyde Dehydrogenase
Length = 398
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 17/134 (12%)
Query: 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSY-NKLNVLHWHLVDDQSFPYESKKFPSL 179
D F RG +G++H P + + + K+ + ++ +D + K SL
Sbjct: 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL 319
Query: 180 SLKGAFG------------PDAIYTEKMIKSV----IEYARLRGIRVIPEIDTPGHTDSM 223
S++ G P Y +++++ I A + G++VI D P
Sbjct: 320 SIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEF 379
Query: 224 EPGMPQIHCHCPHR 237
+ G+P+ PH+
Sbjct: 380 DAGVPKKFVIDPHK 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,886,285
Number of Sequences: 62578
Number of extensions: 427924
Number of successful extensions: 916
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 51
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)