Query psy11379
Match_columns 306
No_of_seqs 283 out of 1914
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:53:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499|consensus 100.0 6.2E-54 1.3E-58 401.7 14.8 210 93-302 145-358 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 1.5E-51 3.2E-56 388.4 17.1 179 125-303 1-182 (348)
3 cd06570 GH20_chitobiase-like_1 100.0 7E-51 1.5E-55 377.2 18.0 177 125-303 1-180 (311)
4 cd06563 GH20_chitobiase-like T 100.0 6.6E-50 1.4E-54 378.6 17.7 179 125-303 1-198 (357)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 1E-48 2.3E-53 378.4 17.8 183 121-303 1-234 (445)
6 PF00728 Glyco_hydro_20: Glyco 100.0 1.5E-47 3.2E-52 361.7 9.6 179 125-303 1-189 (351)
7 cd06568 GH20_SpHex_like A subg 100.0 1.2E-45 2.7E-50 345.2 17.1 161 125-285 1-169 (329)
8 cd02742 GH20_hexosaminidase Be 100.0 1.7E-44 3.8E-49 334.7 15.6 158 127-284 1-162 (303)
9 cd06564 GH20_DspB_LnbB-like Gl 100.0 5.9E-44 1.3E-48 334.3 16.5 169 19-284 1-171 (326)
10 COG3525 Chb N-acetyl-beta-hexo 100.0 5.3E-42 1.1E-46 331.8 17.4 271 25-305 157-462 (732)
11 cd06569 GH20_Sm-chitobiase-lik 100.0 3.2E-37 7E-42 298.4 8.2 198 14-215 1-262 (445)
12 cd06565 GH20_GcnA-like Glycosy 100.0 9.8E-35 2.1E-39 269.0 16.5 144 127-284 1-145 (301)
13 cd06570 GH20_chitobiase-like_1 100.0 1.5E-35 3.2E-40 274.8 9.7 192 18-216 1-209 (311)
14 cd06562 GH20_HexA_HexB-like Be 100.0 2.6E-35 5.5E-40 278.0 9.6 193 18-216 1-211 (348)
15 cd06563 GH20_chitobiase-like T 100.0 2.4E-35 5.3E-40 279.2 9.3 194 18-216 1-227 (357)
16 KOG2499|consensus 100.0 6.4E-35 1.4E-39 273.9 9.8 203 6-213 169-386 (542)
17 cd06568 GH20_SpHex_like A subg 100.0 3.4E-34 7.4E-39 268.1 11.1 178 18-216 1-197 (329)
18 cd02742 GH20_hexosaminidase Be 100.0 1.7E-32 3.7E-37 254.4 9.3 179 20-217 1-194 (303)
19 PF00728 Glyco_hydro_20: Glyco 100.0 6.2E-33 1.3E-37 262.0 3.2 195 18-217 1-219 (351)
20 COG3525 Chb N-acetyl-beta-hexo 100.0 2.1E-29 4.6E-34 244.5 9.9 207 4-214 247-487 (732)
21 cd06565 GH20_GcnA-like Glycosy 99.9 4.5E-25 9.8E-30 204.5 8.9 182 20-218 1-189 (301)
22 cd06564 GH20_DspB_LnbB-like Gl 99.3 3.5E-12 7.5E-17 119.8 4.6 59 126-186 1-59 (326)
23 PF02638 DUF187: Glycosyl hydr 97.2 0.0064 1.4E-07 56.8 12.9 148 127-276 2-160 (311)
24 COG1649 Uncharacterized protei 96.5 0.067 1.5E-06 51.7 13.5 146 125-272 45-201 (418)
25 PF13200 DUF4015: Putative gly 95.2 0.17 3.7E-06 47.4 9.9 123 141-268 12-136 (316)
26 PF14871 GHL6: Hypothetical gl 94.9 0.38 8.2E-06 39.2 10.2 117 145-271 3-125 (132)
27 PF02065 Melibiase: Melibiase; 94.2 0.52 1.1E-05 45.6 10.9 128 140-276 56-189 (394)
28 PF02449 Glyco_hydro_42: Beta- 94.0 0.24 5.3E-06 47.3 8.2 139 140-298 8-158 (374)
29 PF10566 Glyco_hydro_97: Glyco 94.0 0.21 4.6E-06 45.8 7.3 110 140-267 30-148 (273)
30 PRK12313 glycogen branching en 86.6 9.2 0.0002 39.4 12.0 121 140-269 168-301 (633)
31 TIGR01515 branching_enzym alph 86.6 12 0.00026 38.4 12.7 115 143-269 158-287 (613)
32 COG0296 GlgB 1,4-alpha-glucan 85.6 10 0.00023 38.8 11.5 71 141-221 164-240 (628)
33 smart00642 Aamy Alpha-amylase 85.1 4.1 9E-05 34.4 7.3 75 140-222 17-97 (166)
34 PRK12568 glycogen branching en 83.1 17 0.00036 38.1 11.9 118 143-269 271-400 (730)
35 PRK14706 glycogen branching en 81.9 17 0.00036 37.6 11.4 120 138-269 163-298 (639)
36 cd06592 GH31_glucosidase_KIAA1 81.1 16 0.00036 33.8 10.2 115 138-266 26-151 (303)
37 PRK14705 glycogen branching en 79.2 21 0.00046 39.5 11.6 116 142-269 766-896 (1224)
38 cd06594 GH31_glucosidase_YihQ 78.6 10 0.00022 35.5 7.9 120 140-265 21-151 (317)
39 TIGR02403 trehalose_treC alpha 78.3 8.4 0.00018 38.9 7.8 70 140-221 25-101 (543)
40 PRK03705 glycogen debranching 78.0 27 0.00058 36.2 11.4 77 193-270 241-329 (658)
41 TIGR02402 trehalose_TreZ malto 77.8 36 0.00078 34.4 12.1 72 141-221 110-186 (542)
42 TIGR02100 glgX_debranch glycog 77.7 34 0.00074 35.7 12.2 78 192-270 243-334 (688)
43 cd06593 GH31_xylosidase_YicI Y 76.4 38 0.00082 31.3 11.2 118 138-267 20-147 (308)
44 PF00128 Alpha-amylase: Alpha 76.2 7.8 0.00017 34.9 6.4 71 142-220 4-77 (316)
45 PLN02361 alpha-amylase 75.7 13 0.00028 36.1 8.0 67 141-220 28-101 (401)
46 COG2100 Predicted Fe-S oxidore 75.5 27 0.00058 33.0 9.5 133 32-207 141-284 (414)
47 PF13200 DUF4015: Putative gly 75.0 48 0.001 31.1 11.3 172 34-221 12-199 (316)
48 cd06598 GH31_transferase_CtsZ 74.6 21 0.00045 33.3 8.9 120 138-267 20-152 (317)
49 PLN02960 alpha-amylase 74.5 41 0.0009 36.0 11.7 118 140-269 414-548 (897)
50 PRK09441 cytoplasmic alpha-amy 73.2 14 0.0003 36.6 7.7 78 142-221 22-107 (479)
51 PLN02447 1,4-alpha-glucan-bran 72.4 49 0.0011 34.9 11.7 117 144-269 253-382 (758)
52 PRK10933 trehalose-6-phosphate 71.8 16 0.00035 36.9 8.0 73 141-221 32-107 (551)
53 KOG0259|consensus 71.6 7.9 0.00017 37.2 5.2 32 188-220 213-244 (447)
54 PRK05402 glycogen branching en 70.9 14 0.0003 38.8 7.4 70 144-221 268-341 (726)
55 PF02838 Glyco_hydro_20b: Glyc 70.1 2.7 5.8E-05 33.2 1.6 51 58-122 74-124 (124)
56 PF01055 Glyco_hydro_31: Glyco 69.1 30 0.00066 33.6 9.0 122 139-272 40-172 (441)
57 PF07555 NAGidase: beta-N-acet 68.3 13 0.00029 34.6 6.0 64 137-214 10-76 (306)
58 PLN00196 alpha-amylase; Provis 67.4 27 0.00059 34.2 8.2 68 141-221 43-118 (428)
59 PRK14510 putative bifunctional 66.5 74 0.0016 35.6 12.1 75 192-267 245-333 (1221)
60 PRK10785 maltodextrin glucosid 66.1 24 0.00053 36.0 7.9 68 141-221 178-252 (598)
61 cd06603 GH31_GANC_GANAB_alpha 64.6 41 0.00089 31.7 8.7 118 137-267 19-147 (339)
62 PF13199 Glyco_hydro_66: Glyco 64.6 21 0.00046 36.2 7.0 151 120-275 97-263 (559)
63 PRK09856 fructoselysine 3-epim 63.4 16 0.00035 32.8 5.6 62 141-215 89-150 (275)
64 TIGR02456 treS_nterm trehalose 62.5 30 0.00064 34.9 7.7 69 141-221 27-102 (539)
65 PF10566 Glyco_hydro_97: Glyco 62.4 5.2 0.00011 36.7 2.0 119 27-156 23-151 (273)
66 cd00019 AP2Ec AP endonuclease 62.2 33 0.00072 30.9 7.4 61 140-214 83-143 (279)
67 PF00150 Cellulase: Cellulase 61.7 23 0.0005 31.5 6.2 63 143-216 22-84 (281)
68 PF05913 DUF871: Bacterial pro 61.6 18 0.00038 34.6 5.5 55 140-215 12-68 (357)
69 PLN02784 alpha-amylase 61.5 35 0.00075 36.4 8.0 69 141-222 520-595 (894)
70 PRK10658 putative alpha-glucos 60.8 56 0.0012 34.0 9.4 118 139-267 280-406 (665)
71 cd06604 GH31_glucosidase_II_Ma 60.5 52 0.0011 30.9 8.6 118 137-267 19-147 (339)
72 cd06591 GH31_xylosidase_XylS X 59.9 49 0.0011 30.9 8.2 107 138-264 20-143 (319)
73 PRK12677 xylose isomerase; Pro 59.8 56 0.0012 31.5 8.7 64 140-213 112-178 (384)
74 PLN03244 alpha-amylase; Provis 56.4 49 0.0011 35.1 8.0 77 189-269 436-523 (872)
75 TIGR02401 trehalose_TreY malto 55.5 56 0.0012 34.8 8.4 74 140-221 14-91 (825)
76 TIGR02102 pullulan_Gpos pullul 55.4 2.1E+02 0.0045 31.8 12.9 74 193-269 554-634 (1111)
77 cd06595 GH31_xylosidase_XylS-l 54.7 79 0.0017 29.0 8.6 118 138-265 21-145 (292)
78 PRK14511 maltooligosyl trehalo 54.4 53 0.0011 35.2 8.0 75 139-221 17-95 (879)
79 PF01261 AP_endonuc_2: Xylose 53.7 15 0.00033 30.9 3.4 64 141-215 70-133 (213)
80 PF01212 Beta_elim_lyase: Beta 52.7 76 0.0016 29.3 8.1 74 131-220 97-171 (290)
81 cd06602 GH31_MGAM_SI_GAA This 52.3 2.1E+02 0.0045 27.0 12.0 118 137-270 19-155 (339)
82 TIGR02455 TreS_stutzeri trehal 51.0 42 0.00092 34.6 6.5 32 189-221 125-156 (688)
83 PRK13957 indole-3-glycerol-pho 50.2 33 0.00072 31.0 5.1 43 189-231 133-175 (247)
84 cd06600 GH31_MGAM-like This fa 50.0 2.2E+02 0.0047 26.5 11.2 118 138-267 20-147 (317)
85 TIGR02104 pulA_typeI pullulana 49.6 41 0.00088 34.5 6.3 28 193-221 228-255 (605)
86 PF14701 hDGE_amylase: glucano 49.2 1.8E+02 0.0039 28.5 10.2 91 140-238 20-123 (423)
87 PF00834 Ribul_P_3_epim: Ribul 48.4 1.8E+02 0.004 25.2 9.7 103 34-215 11-113 (201)
88 COG1874 LacA Beta-galactosidas 48.4 3.4E+02 0.0074 28.3 12.8 144 140-299 28-182 (673)
89 PRK10426 alpha-glucosidase; Pr 48.2 1.7E+02 0.0036 30.3 10.5 134 121-264 203-347 (635)
90 TIGR03586 PseI pseudaminic aci 48.0 60 0.0013 30.6 6.7 81 140-222 15-105 (327)
91 COG3589 Uncharacterized conser 47.0 34 0.00074 32.3 4.7 55 140-215 14-70 (360)
92 cd00452 KDPG_aldolase KDPG and 46.7 48 0.001 28.3 5.5 64 197-278 87-151 (190)
93 TIGR03849 arch_ComA phosphosul 46.3 40 0.00086 30.3 4.9 59 139-221 9-67 (237)
94 COG0134 TrpC Indole-3-glycerol 46.1 52 0.0011 29.9 5.6 43 189-231 138-180 (254)
95 COG1168 MalY Bifunctional PLP- 44.8 26 0.00056 33.6 3.7 25 188-212 172-196 (388)
96 TIGR01531 glyc_debranch glycog 43.7 1.7E+02 0.0037 33.2 10.0 93 140-237 130-230 (1464)
97 KOG0470|consensus 43.6 29 0.00063 36.1 4.0 116 142-267 255-392 (757)
98 PRK14582 pgaB outer membrane N 43.5 4.1E+02 0.0088 27.8 15.3 163 127-301 314-489 (671)
99 PRK10076 pyruvate formate lyas 43.4 86 0.0019 27.5 6.6 67 141-211 144-210 (213)
100 COG0113 HemB Delta-aminolevuli 42.9 2.6E+02 0.0056 26.2 9.7 143 141-303 16-191 (330)
101 PF01301 Glyco_hydro_35: Glyco 40.4 1.1E+02 0.0024 28.6 7.2 79 140-231 22-100 (319)
102 PLN02877 alpha-amylase/limit d 40.0 1.8E+02 0.004 31.7 9.4 28 193-221 465-492 (970)
103 PRK00278 trpC indole-3-glycero 39.3 70 0.0015 29.0 5.6 41 191-231 144-184 (260)
104 PF03851 UvdE: UV-endonuclease 38.8 1E+02 0.0022 28.4 6.5 44 169-213 62-106 (275)
105 cd06599 GH31_glycosidase_Aec37 38.6 3.3E+02 0.0071 25.3 10.1 117 141-266 28-154 (317)
106 PF02679 ComA: (2R)-phospho-3- 35.9 1E+02 0.0022 27.9 5.9 57 130-212 16-72 (244)
107 PLN02951 Molybderin biosynthes 34.9 3.7E+02 0.008 25.7 10.0 25 30-54 88-112 (373)
108 PF02638 DUF187: Glycosyl hydr 34.6 88 0.0019 29.2 5.5 80 19-101 1-84 (311)
109 PF01565 FAD_binding_4: FAD bi 34.3 52 0.0011 26.1 3.5 22 192-213 9-30 (139)
110 PRK09505 malS alpha-amylase; R 34.1 1.8E+02 0.004 30.3 8.2 80 141-221 229-318 (683)
111 COG1088 RfbB dTDP-D-glucose 4, 34.0 1.7E+02 0.0038 27.5 7.1 53 160-212 121-176 (340)
112 TIGR03234 OH-pyruv-isom hydrox 33.6 16 0.00034 32.6 0.3 130 20-166 69-207 (254)
113 PRK13384 delta-aminolevulinic 33.6 4.1E+02 0.009 25.0 12.5 144 141-303 16-188 (322)
114 COG1313 PflX Uncharacterized F 33.4 96 0.0021 28.9 5.3 24 189-212 310-333 (335)
115 PRK14507 putative bifunctional 33.4 1.4E+02 0.0029 34.7 7.5 74 140-221 756-833 (1693)
116 COG1306 Uncharacterized conser 33.3 1.5E+02 0.0032 27.8 6.5 116 143-267 78-207 (400)
117 PRK05301 pyrroloquinoline quin 32.7 1.1E+02 0.0024 29.0 6.0 30 136-167 43-72 (378)
118 COG0826 Collagenase and relate 31.8 1.1E+02 0.0024 29.1 5.8 34 189-222 44-77 (347)
119 PF09183 DUF1947: Domain of un 31.7 31 0.00067 24.5 1.5 23 28-50 1-24 (65)
120 TIGR03234 OH-pyruv-isom hydrox 31.2 51 0.0011 29.2 3.3 74 128-214 70-143 (254)
121 TIGR02109 PQQ_syn_pqqE coenzym 31.1 1.2E+02 0.0026 28.5 5.9 30 137-168 35-64 (358)
122 cd06597 GH31_transferase_CtsY 30.9 4.6E+02 0.0099 24.7 10.9 127 137-267 19-174 (340)
123 PF14542 Acetyltransf_CG: GCN5 30.9 55 0.0012 23.8 2.8 39 189-230 37-75 (78)
124 COG0366 AmyA Glycosidases [Car 30.5 1.9E+02 0.0041 28.1 7.4 68 141-220 28-102 (505)
125 COG3785 Uncharacterized conser 30.4 24 0.00052 27.4 0.8 21 11-31 19-39 (116)
126 COG3033 TnaA Tryptophanase [Am 30.3 1.8E+02 0.0039 28.1 6.7 60 139-216 169-228 (471)
127 cd04824 eu_ALAD_PBGS_cysteine_ 29.3 4.7E+02 0.01 24.6 9.2 141 142-301 7-180 (320)
128 PF14488 DUF4434: Domain of un 29.1 3.5E+02 0.0075 22.7 8.4 70 139-215 17-86 (166)
129 PF03198 Glyco_hydro_72: Gluca 28.4 3.4E+02 0.0074 25.5 8.1 113 142-301 53-174 (314)
130 PRK13802 bifunctional indole-3 28.3 1.8E+02 0.004 30.4 7.1 43 189-231 142-184 (695)
131 PRK01060 endonuclease IV; Prov 28.0 1.3E+02 0.0028 27.0 5.4 108 22-165 5-112 (281)
132 PLN02607 1-aminocyclopropane-1 27.8 2.1E+02 0.0045 28.1 7.1 25 188-212 214-238 (447)
133 COG0436 Aspartate/tyrosine/aro 27.6 63 0.0014 31.1 3.4 25 188-212 177-201 (393)
134 PRK09722 allulose-6-phosphate 27.5 4.4E+02 0.0096 23.4 8.7 25 34-59 14-38 (229)
135 PRK09427 bifunctional indole-3 27.5 1.1E+02 0.0024 30.3 5.1 43 189-231 141-183 (454)
136 PRK01060 endonuclease IV; Prov 27.3 2.3E+02 0.005 25.3 6.9 58 129-209 5-62 (281)
137 PF07488 Glyco_hydro_67M: Glyc 27.2 5.3E+02 0.012 24.3 9.5 95 141-271 56-150 (328)
138 PRK14465 ribosomal RNA large s 27.1 1.9E+02 0.0042 27.4 6.5 72 121-213 219-292 (342)
139 smart00633 Glyco_10 Glycosyl h 27.0 1.7E+02 0.0037 26.1 6.0 63 189-272 11-73 (254)
140 cd06589 GH31 The enzymes of gl 27.0 2.3E+02 0.0049 25.5 6.8 69 138-216 20-88 (265)
141 PF00218 IGPS: Indole-3-glycer 26.7 60 0.0013 29.5 2.9 43 189-231 140-182 (254)
142 PF13380 CoA_binding_2: CoA bi 26.5 66 0.0014 25.2 2.8 52 131-211 55-106 (116)
143 PRK09283 delta-aminolevulinic 26.3 5.6E+02 0.012 24.2 12.6 143 142-303 15-186 (323)
144 PRK14340 (dimethylallyl)adenos 26.3 95 0.0021 30.5 4.4 68 143-221 243-314 (445)
145 COG0621 MiaB 2-methylthioadeni 25.7 2.3E+02 0.005 27.9 6.9 130 32-221 173-311 (437)
146 PRK06302 acetyl-CoA carboxylas 25.4 1E+02 0.0022 25.6 3.9 33 33-68 2-34 (155)
147 TIGR01866 cas_Csn2 CRISPR-asso 25.2 2E+02 0.0043 25.5 5.8 63 127-212 134-196 (216)
148 CHL00130 rbcS ribulose-1,5-bis 24.9 1.3E+02 0.0028 24.7 4.1 33 189-221 12-44 (138)
149 TIGR02103 pullul_strch alpha-1 24.9 4E+02 0.0086 28.9 8.9 28 193-221 403-430 (898)
150 COG1856 Uncharacterized homolo 24.8 1.8E+02 0.004 26.1 5.4 89 126-216 55-158 (275)
151 COG1820 NagA N-acetylglucosami 24.6 1.2E+02 0.0025 29.3 4.5 67 140-215 99-173 (380)
152 PRK06552 keto-hydroxyglutarate 24.5 1.7E+02 0.0036 25.8 5.2 33 192-224 94-126 (213)
153 PLN02763 hydrolase, hydrolyzin 22.5 6.3E+02 0.014 27.7 9.8 116 137-267 196-324 (978)
154 PF01244 Peptidase_M19: Membra 22.4 1.2E+02 0.0027 28.3 4.3 50 254-303 247-303 (320)
155 PF13394 Fer4_14: 4Fe-4S singl 22.3 1.1E+02 0.0024 23.4 3.4 58 137-213 27-86 (119)
156 PRK02227 hypothetical protein; 22.3 1.1E+02 0.0025 27.4 3.7 32 18-49 143-181 (238)
157 KOG0464|consensus 22.2 73 0.0016 31.2 2.6 27 196-222 76-115 (753)
158 KOG0673|consensus 22.2 1E+02 0.0022 27.7 3.3 35 248-282 203-237 (293)
159 PRK15452 putative protease; Pr 21.9 3.1E+02 0.0066 27.1 7.0 32 189-220 41-72 (443)
160 COG0296 GlgB 1,4-alpha-glucan 21.5 2.3E+02 0.005 29.3 6.2 76 85-167 163-243 (628)
161 PRK11177 phosphoenolpyruvate-p 21.4 8.9E+02 0.019 24.8 12.1 151 119-299 349-540 (575)
162 PLN03059 beta-galactosidase; P 21.4 6.1E+02 0.013 27.3 9.3 62 140-214 57-118 (840)
163 smart00642 Aamy Alpha-amylase 21.3 2.1E+02 0.0046 23.9 5.1 62 32-101 16-84 (166)
164 TIGR03569 NeuB_NnaB N-acetylne 21.3 2.9E+02 0.0063 26.1 6.5 78 140-221 14-103 (329)
165 PF13204 DUF4038: Protein of u 21.1 6.4E+02 0.014 23.0 8.9 69 141-211 29-105 (289)
166 PLN02289 ribulose-bisphosphate 21.1 4.6E+02 0.0099 22.4 6.8 29 189-217 74-102 (176)
167 KOG0256|consensus 21.1 5.7E+02 0.012 25.2 8.3 66 130-212 198-264 (471)
168 PRK14129 heat shock protein Hs 20.6 1E+02 0.0023 24.0 2.7 54 11-64 10-64 (105)
169 cd06601 GH31_lyase_GLase GLase 20.6 7.1E+02 0.015 23.4 10.3 102 137-266 19-120 (332)
170 cd02067 B12-binding B12 bindin 20.6 3.9E+02 0.0085 20.4 6.9 71 196-280 16-90 (119)
171 smart00518 AP2Ec AP endonuclea 20.2 3.4E+02 0.0073 24.1 6.6 22 191-212 81-102 (273)
172 PF07745 Glyco_hydro_53: Glyco 20.1 7.4E+02 0.016 23.4 10.0 113 145-286 27-141 (332)
173 PRK14335 (dimethylallyl)adenos 20.0 1.6E+02 0.0036 28.9 4.7 65 145-220 255-323 (455)
No 1
>KOG2499|consensus
Probab=100.00 E-value=6.2e-54 Score=401.66 Aligned_cols=210 Identities=50% Similarity=0.829 Sum_probs=191.3
Q ss_pred cccccccccccccccccee----eeeeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCc
Q psy11379 93 GLGARKMTLCNSTLVPFLF----QIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQS 168 (306)
Q Consensus 93 ~~~ar~~~i~~~~lVp~l~----~~~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~ 168 (306)
+.||+....|.+++|-.-. ..+....|.|.|+|+|||++||++|||+|+..|++.||.||..|+|+|||||.|+++
T Consensus 145 vwGAlrglETfSqLv~~d~~~~~~~~~~~~I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~S 224 (542)
T KOG2499|consen 145 VWGALRGLETFSQLVWGDSIGGLFMIATAYIQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQS 224 (542)
T ss_pred HHHHHHHHHHHHHHheeccCCceEEeeeeeEeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCC
Confidence 3455544455555554421 235567899999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCccCCccccCcC
Q psy11379 169 FPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLD 248 (306)
Q Consensus 169 ~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~ 248 (306)
||+++.++|+|..+|+|++.+.||++|+.+||+||+.|||+|+||+|+|||+++|..++|++...|++.-+..+.++++|
T Consensus 225 FPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gpln 304 (542)
T KOG2499|consen 225 FPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLN 304 (542)
T ss_pred CccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988554455678999
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCCeEEecCCccCccccccCHHHHHHHHhCCCC
Q psy11379 249 PTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSSGDEV 302 (306)
Q Consensus 249 ~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv~~~~~~~~p~~~~~~~~~~~~ 302 (306)
|+++.||+|+++++.||.+.||..+||+|||||...||+++|++|+||+++|+-
T Consensus 305 P~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg 358 (542)
T KOG2499|consen 305 PTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVSTPCWKSNPEIQDFMRKKGFG 358 (542)
T ss_pred CCchhHHHHHHHHHHHHHHhCcHHHeecCCceeecccccCChHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999874
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=1.5e-51 Score=388.36 Aligned_cols=179 Identities=54% Similarity=1.013 Sum_probs=168.1
Q ss_pred CCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q psy11379 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYAR 204 (306)
Q Consensus 125 ~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~ 204 (306)
|++||+|||++|+|+|+++||++||.||.+|+|.||||++|||+||++++++|+|+..|++++.++||++|+++|++||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeEEeccCCchhhhhhhhcCCccccCCCCC---ccCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEecCCcc
Q psy11379 205 LRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHR---VEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 281 (306)
Q Consensus 205 ~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~---~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv 281 (306)
+|||+||||||+|||+.+|++++|++...|... ..++...++|||++|+|++|+++|++|++++|+++||||||||+
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~ 160 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEV 160 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCC
Confidence 999999999999999999999999998776541 11233467899999999999999999999999999999999999
Q ss_pred CccccccCHHHHHHHHhCCCCC
Q psy11379 282 DFFCWEQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 282 ~~~~~~~~p~~~~~~~~~~~~~ 303 (306)
...||.++|+|+++|+++|.++
T Consensus 161 ~~~~w~~~p~~~~~m~~~g~~~ 182 (348)
T cd06562 161 NFNCWNSNPEIQKFMKKNNGTD 182 (348)
T ss_pred CCCcccCCHHHHHHHHHcCCCC
Confidence 9999999999999999998665
No 3
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=7e-51 Score=377.16 Aligned_cols=177 Identities=48% Similarity=0.821 Sum_probs=163.3
Q ss_pred CCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q psy11379 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYAR 204 (306)
Q Consensus 125 ~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~ 204 (306)
|++||+|||++|+|+|+++||++||.||.+|+|+||||++|||+||++++++|++++.|+. +++||++|+++|++||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~--~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASD--GLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCC--CCccCHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999988864 48999999999999999
Q ss_pred HcCCeEEeccCCchhhhhhhhcCCccccCCCCCcc---CCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEecCCcc
Q psy11379 205 LRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVE---GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 281 (306)
Q Consensus 205 ~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~---~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv 281 (306)
+|||+||||||+|||+.+|++++|++...|..... .....++|||++|+|++|+++|++|++++|++++|||||||+
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE~ 158 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEV 158 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccCC
Confidence 99999999999999999999999999876643111 011345899999999999999999999999999999999999
Q ss_pred CccccccCHHHHHHHHhCCCCC
Q psy11379 282 DFFCWEQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 282 ~~~~~~~~p~~~~~~~~~~~~~ 303 (306)
...||+++|.|+++|+++|+++
T Consensus 159 ~~~~W~~~p~~~~~~~~~g~~~ 180 (311)
T cd06570 159 DPKQWNENPRIQAFMKEHGLKD 180 (311)
T ss_pred CCCcccCCHHHHHHHHHcCCCC
Confidence 9999999999999999999876
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=6.6e-50 Score=378.62 Aligned_cols=179 Identities=40% Similarity=0.716 Sum_probs=166.4
Q ss_pred CCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC----------------C
Q psy11379 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP----------------D 188 (306)
Q Consensus 125 ~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~----------------~ 188 (306)
|++||+|||++|+|+|+++||++||.||.+|+|.||||++|||+||++++++|+|++.|++++ .
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 789999999999999999999999999999999999999999999999999999999998875 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCc---cCCccccCcCCCChhHHHHHHHHHHHH
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRV---EGKTFVGPLDPTKNVTLDFVRDLFTEL 265 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~---~~~~~~~~l~~~~~~t~~~~~~l~~e~ 265 (306)
++||++|+++|++||++|||+||||||+|||+.+|++++|++...+.... .+....++|||++|+|++|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999987654311 122356799999999999999999999
Q ss_pred HhhCCCCeEEecCCccCccccccCHHHHHHHHhCCCCC
Q psy11379 266 GQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 266 ~~~f~~~~~hiGgDEv~~~~~~~~p~~~~~~~~~~~~~ 303 (306)
+++|++++|||||||+...||+++|.|+++|+++|..+
T Consensus 161 ~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~ 198 (357)
T cd06563 161 AELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKD 198 (357)
T ss_pred HHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999998765
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1e-48 Score=378.39 Aligned_cols=183 Identities=31% Similarity=0.488 Sum_probs=163.2
Q ss_pred cCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------------
Q psy11379 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP------------- 187 (306)
Q Consensus 121 D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~------------- 187 (306)
|+|+|++||+|||++|+|+|+++||++||.||.+|+|+||||++|||+||++++++|+|++.|+++.
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999888731
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhc----CCccccCCCCC---------c------
Q psy11379 188 ----------DAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPG----MPQIHCHCPHR---------V------ 238 (306)
Q Consensus 188 ----------~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~----~p~l~~~~~~~---------~------ 238 (306)
.++||++|+++|++||++|||+||||||+|||+.+++++ ||+|...+... +
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 468999999999999999999999999999999999875 78875432110 0
Q ss_pred -cCC-ccccCcCCCChhHHHHHHHHHHHHHhhC-----CCCeEEecCCccCccccccCHHHH--HHHHhCCCCC
Q psy11379 239 -EGK-TFVGPLDPTKNVTLDFVRDLFTELGQRF-----PESYVHLGGDEVDFFCWEQNPEIK--AFMSSGDEVD 303 (306)
Q Consensus 239 -~~~-~~~~~l~~~~~~t~~~~~~l~~e~~~~f-----~~~~~hiGgDEv~~~~~~~~p~~~--~~~~~~~~~~ 303 (306)
+.+ ...++|||++|+|++|+++|++|++++| |++||||||||+...||+++|+|+ ++|+++|..+
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~ 234 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKD 234 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCC
Confidence 000 1346899999999999999999999999 668999999999999999999999 9999988765
No 6
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=1.5e-47 Score=361.69 Aligned_cols=179 Identities=44% Similarity=0.850 Sum_probs=155.9
Q ss_pred CCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCC---CCCHHHHHHHHH
Q psy11379 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDA---IYTEKMIKSVIE 201 (306)
Q Consensus 125 ~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~---~yt~~~v~~l~~ 201 (306)
|++||+|||++|+|+|+++||++||.||.+|+|.||||++|+|+||++++++|+++..|++++.. +||++|+++|++
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998755 999999999999
Q ss_pred HHHHcCCeEEeccCCchhhhhhhhcCCccccCC--CC-----CccCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeE
Q psy11379 202 YARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC--PH-----RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYV 274 (306)
Q Consensus 202 ~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~--~~-----~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~ 274 (306)
||+++||+||||||+|||+++|++++|++...+ .+ .....+...+|||++|+|++|+++|++|++++|++++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~i 160 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYI 160 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeE
Confidence 999999999999999999999999999987541 11 01112234689999999999999999999999999999
Q ss_pred EecCCccCccccccCHHHHHHHHhCCCCC
Q psy11379 275 HLGGDEVDFFCWEQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 275 hiGgDEv~~~~~~~~p~~~~~~~~~~~~~ 303 (306)
|||||||+..||+++|+|+++|+++|+.+
T Consensus 161 HiGgDEv~~~~~~~~~~~~~~~~~~~~~~ 189 (351)
T PF00728_consen 161 HIGGDEVNYNCWNNSPECQAWMKQNGLTD 189 (351)
T ss_dssp EEE-TSTTTHHHHCHHHHHHHHHHTTTTC
T ss_pred EeCCcccccccccCCHHHhhHHhhcCCch
Confidence 99999999999999999999999998754
No 7
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=1.2e-45 Score=345.16 Aligned_cols=161 Identities=38% Similarity=0.668 Sum_probs=146.1
Q ss_pred CCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCC-----CCCCCCHHHHHHH
Q psy11379 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG-----PDAIYTEKMIKSV 199 (306)
Q Consensus 125 ~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~-----~~~~yt~~~v~~l 199 (306)
|++||+|||++|+|+|+++||++||.||.+|+|.||||++|||+||++++++|+++..|+++ ++++||++|+++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999988764 4689999999999
Q ss_pred HHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCc---cCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEe
Q psy11379 200 IEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRV---EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHL 276 (306)
Q Consensus 200 ~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~---~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hi 276 (306)
++||++|||+||||||+|||+.+|++++|++...+...+ ..+...++|||++|+|++|+++|++|++++|++++|||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999999999999999999999975433211 11223578999999999999999999999999999999
Q ss_pred cCCccCccc
Q psy11379 277 GGDEVDFFC 285 (306)
Q Consensus 277 GgDEv~~~~ 285 (306)
||||+....
T Consensus 161 GgDE~~~~~ 169 (329)
T cd06568 161 GGDEAHSTP 169 (329)
T ss_pred ecccCCCCc
Confidence 999998654
No 8
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.7e-44 Score=334.65 Aligned_cols=158 Identities=44% Similarity=0.848 Sum_probs=144.7
Q ss_pred cccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccC----CCCCCCCCCHHHHHHHHHH
Q psy11379 127 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG----AFGPDAIYTEKMIKSVIEY 202 (306)
Q Consensus 127 ~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g----~~~~~~~yt~~~v~~l~~~ 202 (306)
|||+|||++|+|+|+++||++||.||.+|+|.||||++|||+||++++++|+|++.| ++.+.++||++|+++|++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999887 4456789999999999999
Q ss_pred HHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEecCCccC
Q psy11379 203 ARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVD 282 (306)
Q Consensus 203 a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv~ 282 (306)
|++|||+||||||+|||+.+|++++|++...|..........+.|||++|+|++|+++|++|++++|++++|||||||+.
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~ 160 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAH 160 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecC
Confidence 99999999999999999999999999998777652111113569999999999999999999999999999999999997
Q ss_pred cc
Q psy11379 283 FF 284 (306)
Q Consensus 283 ~~ 284 (306)
..
T Consensus 161 ~~ 162 (303)
T cd02742 161 FK 162 (303)
T ss_pred CC
Confidence 53
No 9
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5.9e-44 Score=334.34 Aligned_cols=169 Identities=29% Similarity=0.485 Sum_probs=142.2
Q ss_pred CccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhcccccc
Q psy11379 19 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARK 98 (306)
Q Consensus 19 ~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~ 98 (306)
++||+|||+||||+|+++||++||.||++|+|+|||||+| +||++++.+|.++..|+++.+...
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~-------------- 64 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVK-------------- 64 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccc--------------
Confidence 4799999999999999999999999999999999999999 899999999999776554311000
Q ss_pred ccccccccccceeeeeeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCC
Q psy11379 99 MTLCNSTLVPFLFQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPS 178 (306)
Q Consensus 99 ~~i~~~~lVp~l~~~~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~ 178 (306)
. | .
T Consensus 65 ---------~--------------~------------------------------------------------------~ 67 (326)
T cd06564 65 ---------S--------------G------------------------------------------------------N 67 (326)
T ss_pred ---------c--------------c------------------------------------------------------c
Confidence 0 0 0
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHH
Q psy11379 179 LSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFV 258 (306)
Q Consensus 179 l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 258 (306)
. ..++..+.++||++|+++|++||++|||+||||||+|||+.+|++++|++...+.. .....++|||++|+|++|+
T Consensus 68 ~-~~~~~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~---~~~~~~~l~~~~~~t~~f~ 143 (326)
T cd06564 68 N-YYNLTANDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPF---SKYDKDTLDISNPEAVKFV 143 (326)
T ss_pred c-cCCCCCCCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcc---cCCCcccccCCCHHHHHHH
Confidence 0 01233345899999999999999999999999999999999999999999876541 1223679999999999999
Q ss_pred HHHHHHHHhhCC--CCeEEecCCccCcc
Q psy11379 259 RDLFTELGQRFP--ESYVHLGGDEVDFF 284 (306)
Q Consensus 259 ~~l~~e~~~~f~--~~~~hiGgDEv~~~ 284 (306)
++|++|++++|+ +++|||||||+...
T Consensus 144 ~~l~~E~~~~f~~~~~~~HiGgDE~~~~ 171 (326)
T cd06564 144 KALFDEYLDGFNPKSDTVHIGADEYAGD 171 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEecccccccc
Confidence 999999999999 99999999999863
No 10
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-42 Score=331.80 Aligned_cols=271 Identities=28% Similarity=0.445 Sum_probs=213.2
Q ss_pred eecCCCCCC--HHHHHHHHHHHHhc---CCcEEEEeec---------cCCCcceeecccCCccccCCCCCcchhhHHHHH
Q psy11379 25 VDGSRHYLP--IKAIKKQLDIMSYN---KLNVLHWHLV---------DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIK 90 (306)
Q Consensus 25 lD~~R~~~~--~~~l~~~id~ma~~---k~N~lh~hl~---------d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~ 90 (306)
.|.++.+.. ++.+....+.++.. +++.+|--+- +.+.|++.++.- .+..+..-.+|.+|....+-
T Consensus 157 ~d~~aa~~a~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~p~~~~e~y~la~~d~-ai~v~a~~~aG~~y~~~tl~ 235 (732)
T COG3525 157 ADISAAYDAKATEALNILLRELANDAEKGLSPLQADKYYPNRKGPTLGEEAYRLAINDK-AIKVTAHDLAGLFYADGTLL 235 (732)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhcccccccCcccccccccccCCCcccchhheeecccc-eeEEeeccccchhhhHHHHH
Confidence 345555533 56666666666544 5565554321 222344433331 22233333456788888888
Q ss_pred hhccccccccccccccccceeeeeeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccc
Q psy11379 91 KVGLGARKMTLCNSTLVPFLFQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP 170 (306)
Q Consensus 91 ~l~~~ar~~~i~~~~lVp~l~~~~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~ 170 (306)
++..+++... .+..++...|.|.|+|.+||+|+|++|+|.+++.++++|+.|+.+|+|.||||++|||+|+
T Consensus 236 qL~t~a~s~q---------g~~~~p~~~I~DaPRf~~rGllvDvaRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwr 306 (732)
T COG3525 236 QLDTSADSFQ---------GDIRFPAVTIVDAPRFAWRGLLVDVARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWR 306 (732)
T ss_pred hhhccccccC---------CCeeeeeeecccCcccchhhhhHhhhhhcCCHHHHHHHHHHHHHhhcceEEEeeccCccee
Confidence 8866554432 1223667789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccCCCCC----------------CCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCC
Q psy11379 171 YESKKFPSLSLKGAFGP----------------DAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC 234 (306)
Q Consensus 171 ~~~~~~p~l~~~g~~~~----------------~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~ 234 (306)
++++++|+|+..|+++. +++||+++++++++||+.++|+||||||+|||+.+.+.++|++....
T Consensus 307 leIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~ItviPeiD~PgHa~aav~A~p~~~l~~ 386 (732)
T COG3525 307 LEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASARQITVIPEIDMPGHARAAVVAYPDLNLGR 386 (732)
T ss_pred eccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhhcCceecCCcCCcchhhhhhhhCccccccc
Confidence 99999999999888652 48999999999999999999999999999999999999999665432
Q ss_pred CCCcc---CCc-cccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEecCCccCcccccc-CHHHHHHHHhCCCCCCC
Q psy11379 235 PHRVE---GKT-FVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQ-NPEIKAFMSSGDEVDFF 305 (306)
Q Consensus 235 ~~~~~---~~~-~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv~~~~~~~-~p~~~~~~~~~~~~~~~ 305 (306)
...++ ..- ....+||+.+.++.|+.++++||.++||+.+|||||||+...+|.. +|.|++.|++.|++++|
T Consensus 387 a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGgDE~~~~qwk~~sp~~q~l~~~~G~~d~~ 462 (732)
T COG3525 387 ADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGGDEFIDGQWKASSPLVQALMEKLGNKDTF 462 (732)
T ss_pred cCCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEeccchhccCeeeccCHHHHHHHHHhccCCcc
Confidence 22111 111 2348999999999999999999999999999999999999999998 99999999999999875
No 11
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.2e-37 Score=298.39 Aligned_cols=198 Identities=20% Similarity=0.233 Sum_probs=154.6
Q ss_pred ecCCCCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCC--------------
Q psy11379 14 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG-------------- 79 (306)
Q Consensus 14 d~p~~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~-------------- 79 (306)
|+|+|+|||+|||+||||+|+++||++||.||++|||+|||||+|+||||++++++|+|+++|+++
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ---------CcchhhHHHHHhhccccccccccccccccceeeeeeeeeeec-----CCCCCccc----------------
Q psy11379 80 ---------PDAIYTEKMIKKVGLGARKMTLCNSTLVPFLFQIIRVQTIED-----FPQFPHRG---------------- 129 (306)
Q Consensus 80 ---------~~~~YT~~ei~~l~~~ar~~~i~~~~lVp~l~~~~~~~~I~D-----~P~~~~Rg---------------- 129 (306)
.+.+||++|+++|+.||+.++| ++||+++.|+|...+.. +|.+...|
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI---~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~ 157 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHI---EVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADT 157 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCC---EEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccc
Confidence 2568999999999999999999 99999999999776432 33331111
Q ss_pred -----------ceecCCCCCcCHHHHHHHHhHHhhcCc----ceeEEEeecCCccccccccCCCcc-----ccCCCCCCC
Q psy11379 130 -----------LLVDGSRHYLPIKAIKKQLDIMSYNKL----NVLHWHLVDDQSFPYESKKFPSLS-----LKGAFGPDA 189 (306)
Q Consensus 130 -----------~~lD~~r~~~~~~~i~~~id~ma~~k~----N~l~lHi~dde~~~~~~~~~p~l~-----~~g~~~~~~ 189 (306)
-.||.+. .-..+++++++++++...- ..=++|||+||.+...+.+.|.++ +.+......
T Consensus 158 ~~~~~~~~~~~~~L~p~~-~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~ 236 (445)
T cd06569 158 SQYLSVQFYTDNVINPCM-PSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVE 236 (445)
T ss_pred cccccccccccccccCCc-hhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHH
Confidence 1234433 1236788888888876421 223899999999999888888765 122221111
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 190 IYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 190 ~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
-+-...++++.++.+++|.++|---|
T Consensus 237 ~l~~~f~~~v~~~l~~~Gk~~i~W~e 262 (445)
T cd06569 237 DLKDYFFERVSKILKAHGITLAGWED 262 (445)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecc
Confidence 12235789999999999999877444
No 12
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=9.8e-35 Score=268.95 Aligned_cols=144 Identities=27% Similarity=0.384 Sum_probs=124.7
Q ss_pred cccceecCCC-CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q psy11379 127 HRGLLVDGSR-HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARL 205 (306)
Q Consensus 127 ~Rg~~lD~~r-~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~ 205 (306)
.||+|||++| ++++++++|++|+.||.+|+|.||||++| +|+ ++++|++... .+.||++|+++|++||++
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D--~f~--~~~~p~~~~~-----~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYED--TFP--YEGEPEVGRM-----RGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEec--cee--cCCCcccccC-----CCCcCHHHHHHHHHHHHH
Confidence 5999999999 99999999999999999999999999999 344 4567876531 367999999999999999
Q ss_pred cCCeEEeccCCchhhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEecCCccCcc
Q psy11379 206 RGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFF 284 (306)
Q Consensus 206 ~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv~~~ 284 (306)
+||+||||||+|||+.+|++ +|++...|... ...++|||++|+|++|+++|++|++++|++++|||||||+...
T Consensus 72 ~gI~vIPeid~pGH~~~~l~-~~~~~~l~~~~----~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~ 145 (301)
T cd06565 72 LGIEVIPLIQTLGHLEFILK-HPEFRHLREVD----DPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDL 145 (301)
T ss_pred cCCEEEecCCCHHHHHHHHh-CcccccccccC----CCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCccccc
Confidence 99999999999999999987 35544333221 1257999999999999999999999999999999999999864
No 13
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.5e-35 Score=274.81 Aligned_cols=192 Identities=30% Similarity=0.429 Sum_probs=152.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhccccc
Q psy11379 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGAR 97 (306)
Q Consensus 18 ~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar 97 (306)
|+|||+|||+||||+|+++||++||.||++|+|+|||||+|+||||++++++|+|+++|+. +.+||++|+++|+.||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~--~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASD--GLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCC--CCccCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998864 47999999999999999
Q ss_pred cccccccccccceeeeeeeeee-ecCCCCCcc----------c---ceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEe
Q psy11379 98 KMTLCNSTLVPFLFQIIRVQTI-EDFPQFPHR----------G---LLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHL 163 (306)
Q Consensus 98 ~~~i~~~~lVp~l~~~~~~~~I-~D~P~~~~R----------g---~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi 163 (306)
.+|| ++||+++.|+|+..+ ..+|.+... | -.||++.. -..+.+++++++++... ..=++|+
T Consensus 79 ~rgI---~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p-~t~~f~~~l~~E~~~lF-~~~~iHi 153 (311)
T cd06570 79 DRGI---RVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNE-ETYTFLDNLFGEMAELF-PDEYFHI 153 (311)
T ss_pred HcCC---EEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCCh-hHHHHHHHHHHHHHHhC-CCCceEe
Confidence 9999 999999999998763 345554221 1 13566541 13688888888887643 3348999
Q ss_pred ecCCccccccccCCCccc---cCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 164 VDDQSFPYESKKFPSLSL---KGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 164 ~dde~~~~~~~~~p~l~~---~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
|+||.+...+.+.|.+++ ...+.....+-...++++.++.+++|.++|---|.
T Consensus 154 GgDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~ 209 (311)
T cd06570 154 GGDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEV 209 (311)
T ss_pred eccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 999999888888888763 11111111112225678888999999998875554
No 14
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=2.6e-35 Score=277.99 Aligned_cols=193 Identities=30% Similarity=0.421 Sum_probs=152.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhccccc
Q psy11379 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGAR 97 (306)
Q Consensus 18 ~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar 97 (306)
|+|||+|||+||||+|+++||++||.||++|+|+|||||+|+||||++++++|+|+.+|+++.+.+||++|+++|+.||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceeeeeeeeee-ecCCCCCcc-------------cceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEe
Q psy11379 98 KMTLCNSTLVPFLFQIIRVQTI-EDFPQFPHR-------------GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHL 163 (306)
Q Consensus 98 ~~~i~~~~lVp~l~~~~~~~~I-~D~P~~~~R-------------g~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi 163 (306)
.+|| ++||++++|+|...+ ..+|..... .-.||++. .-..+++++++++++... ..-++||
T Consensus 81 ~rgI---~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~-~~t~~fl~~vl~E~~~lF-~~~~iHi 155 (348)
T cd06562 81 LRGI---RVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTN-PKTYDFLKTLFKEVSELF-PDKYFHL 155 (348)
T ss_pred HcCC---EEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCC-hhHHHHHHHHHHHHHHhc-CCcceEe
Confidence 9999 999999999997653 444433211 12366544 123678888888887643 3558999
Q ss_pred ecCCccccccccCCCccc----cCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 164 VDDQSFPYESKKFPSLSL----KGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 164 ~dde~~~~~~~~~p~l~~----~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
|+||...-.+...|.+.+ .| ......+-...++++.++.+++|.++|---|+
T Consensus 156 GgDE~~~~~w~~~p~~~~~m~~~g-~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~ 211 (348)
T cd06562 156 GGDEVNFNCWNSNPEIQKFMKKNN-GTDYSDLESYFIQRALDIVRSLGKTPIVWEEV 211 (348)
T ss_pred ecCCCCCCcccCCHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHcCCeEEEeeec
Confidence 999987766666666542 12 11011122346788999999999998875443
No 15
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.4e-35 Score=279.20 Aligned_cols=194 Identities=25% Similarity=0.369 Sum_probs=155.2
Q ss_pred CCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCC----------------c
Q psy11379 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP----------------D 81 (306)
Q Consensus 18 ~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~----------------~ 81 (306)
|+|||+|||+||||+|+++||++||.||++|+|+|||||+|+||||++++++|+|+.+|+++. +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999999999999999999999999886 5
Q ss_pred chhhHHHHHhhccccccccccccccccceeeeeeeeeee-cCCCCCccc-------------ceecCCCCCcCHHHHHHH
Q psy11379 82 AIYTEKMIKKVGLGARKMTLCNSTLVPFLFQIIRVQTIE-DFPQFPHRG-------------LLVDGSRHYLPIKAIKKQ 147 (306)
Q Consensus 82 ~~YT~~ei~~l~~~ar~~~i~~~~lVp~l~~~~~~~~I~-D~P~~~~Rg-------------~~lD~~r~~~~~~~i~~~ 147 (306)
.+||++|+++|+.+|+.+|| ++||+++.|+|...+. .+|.+...+ -.||.+. .-..+.++++
T Consensus 81 ~~YT~~di~eiv~yA~~rgI---~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~-~~t~~f~~~l 156 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGI---TVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGK-PETYTFLEDV 156 (357)
T ss_pred ceECHHHHHHHHHHHHHcCC---EEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCC-hhHHHHHHHH
Confidence 79999999999999999999 9999999999976543 466543211 2456554 2247888899
Q ss_pred HhHHhhcCcceeEEEeecCCccccccccCCCccc---cCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 148 LDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL---KGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 148 id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~---~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
+++++... ..=++|+|+||.+...+.+.|.+.+ .........+-...++++.++.+++|.+++---|+
T Consensus 157 l~E~~~lF-~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~ 227 (357)
T cd06563 157 LDEVAELF-PSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEI 227 (357)
T ss_pred HHHHHHhC-CCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecc
Confidence 98887742 2447899999998887877776643 11111011122457889999999999998876554
No 16
>KOG2499|consensus
Probab=100.00 E-value=6.4e-35 Score=273.93 Aligned_cols=203 Identities=32% Similarity=0.475 Sum_probs=155.7
Q ss_pred cccceeEEecCCCCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhh
Q psy11379 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYT 85 (306)
Q Consensus 6 ~~~~~~i~d~p~~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT 85 (306)
.+...+|.|+|+|+|||+|||+||||+|++.||++||.||++|+||||||++|+||||+|++++|+|..+|||++..+||
T Consensus 169 ~~~~~~I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT 248 (542)
T KOG2499|consen 169 MIATAYIQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYT 248 (542)
T ss_pred EeeeeeEeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeec
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccccccccceeeeeeeeee-ecCCC-----CCcccce-----ecCCCCCcCHHHHHHHHhHHhhc
Q psy11379 86 EKMIKKVGLGARKMTLCNSTLVPFLFQIIRVQTI-EDFPQ-----FPHRGLL-----VDGSRHYLPIKAIKKQLDIMSYN 154 (306)
Q Consensus 86 ~~ei~~l~~~ar~~~i~~~~lVp~l~~~~~~~~I-~D~P~-----~~~Rg~~-----lD~~r~~~~~~~i~~~id~ma~~ 154 (306)
++++.+++.|||-+|| .++|+.+.|+|.+.. ..+|. |..+++. ||...+. .-+.+++++..|+.-
T Consensus 249 ~eDv~evV~yarlRGI---RVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~-tydvls~i~~dv~ev 324 (542)
T KOG2499|consen 249 REDVSEVVEYARLRGI---RVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNH-TYDVLSEIFEDVSEV 324 (542)
T ss_pred HHHHHHHHHHHHhccc---eeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchh-HHHHHHHHHHHHHHh
Confidence 9999999999999999 999999999998875 33443 3333321 3333211 235666666666653
Q ss_pred CcceeEEEeecCCccccccccCCCccc---cCCCCC-CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 155 KLNVLHWHLVDDQSFPYESKKFPSLSL---KGAFGP-DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 155 k~N~l~lHi~dde~~~~~~~~~p~l~~---~g~~~~-~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
++.-.+|+|+||-..-=|++-|++.+ ++++.. ...+-.--++.+.+++...+..+|--
T Consensus 325 -Fp~~~~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~W 386 (542)
T KOG2499|consen 325 -FPDEFFHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVW 386 (542)
T ss_pred -CcHHHeecCCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEe
Confidence 24457999999988666788888875 222221 00011123555666677777666653
No 17
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=3.4e-34 Score=268.08 Aligned_cols=178 Identities=23% Similarity=0.332 Sum_probs=144.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCC-----CcchhhHHHHHhh
Q psy11379 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG-----PDAIYTEKMIKKV 92 (306)
Q Consensus 18 ~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~-----~~~~YT~~ei~~l 92 (306)
|+|||+|||+||||+|+++||++||.||++|+|+|||||+|+||||++++++|+|+..|+++ .+++||++|+++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999998863 5689999999999
Q ss_pred ccccccccccccccccceeeeeeeeee-ecCCCCCccc-------------ceecCCCCCcCHHHHHHHHhHHhhcCcce
Q psy11379 93 GLGARKMTLCNSTLVPFLFQIIRVQTI-EDFPQFPHRG-------------LLVDGSRHYLPIKAIKKQLDIMSYNKLNV 158 (306)
Q Consensus 93 ~~~ar~~~i~~~~lVp~l~~~~~~~~I-~D~P~~~~Rg-------------~~lD~~r~~~~~~~i~~~id~ma~~k~N~ 158 (306)
+.||+.+|| ++||++++|+|...+ ..+|.+...+ -.||.+. .-..+.++.++++++.. +..
T Consensus 81 v~yA~~rgI---~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~fl~~v~~E~~~~-f~~ 155 (329)
T cd06568 81 VAYAAERHI---TVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDK-PTTYEFVDDVFRELAAL-TPG 155 (329)
T ss_pred HHHHHHcCC---EEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCC-HHHHHHHHHHHHHHHHh-CCC
Confidence 999999999 999999999997653 3456543321 1355543 22368888889888765 345
Q ss_pred eEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 159 LHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 159 l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
-++|||+||.+.... ..| ...++++.++.+++|.+++---|.
T Consensus 156 ~~iHiGgDE~~~~~~---------------~~~-~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 156 PYIHIGGDEAHSTPH---------------DDY-AYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred CeEEEecccCCCCch---------------HHH-HHHHHHHHHHHHHCCCeEEEECcc
Confidence 589999999774211 111 357889999999999998875443
No 18
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=99.97 E-value=1.7e-32 Score=254.44 Aligned_cols=179 Identities=26% Similarity=0.364 Sum_probs=145.0
Q ss_pred ccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccC----CCCCcchhhHHHHHhhccc
Q psy11379 20 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG----AFGPDAIYTEKMIKKVGLG 95 (306)
Q Consensus 20 ~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~g----a~~~~~~YT~~ei~~l~~~ 95 (306)
|||+|||+||||+|+++||++||.||++|+|+|||||+|+||||++++.+|+|+.+| +++.+.+||++|+++|+.|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999988 4567789999999999999
Q ss_pred cccccccccccccceeeeeeeeee-ecCCCCCc--------c--cceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEee
Q psy11379 96 ARKMTLCNSTLVPFLFQIIRVQTI-EDFPQFPH--------R--GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLV 164 (306)
Q Consensus 96 ar~~~i~~~~lVp~l~~~~~~~~I-~D~P~~~~--------R--g~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~ 164 (306)
|+.+|| ++||+++.|+|...+ +..|+... + .-.||.+. .-..+.+++++++++... ..=++|+|
T Consensus 81 A~~rgI---~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~-~~t~~fl~~l~~e~~~lf-~~~~iHiG 155 (303)
T cd02742 81 AAARGI---EVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTL-PKGYDFLDDLFGEIAELF-PDRYLHIG 155 (303)
T ss_pred HHHcCC---EEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCC-ccHHHHHHHHHHHHHHhC-CCCeEEec
Confidence 999999 999999999997654 33444211 1 12566654 224788999999987754 34579999
Q ss_pred cCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCc
Q psy11379 165 DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTP 217 (306)
Q Consensus 165 dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~P 217 (306)
+||.+.. .. ...+-...++++.++++++|.+++---|+.
T Consensus 156 gDE~~~~--------~~------~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 194 (303)
T cd02742 156 GDEAHFK--------QD------RKHLMSQFIQRVLDIVKKKGKKVIVWQDGF 194 (303)
T ss_pred ceecCCC--------CC------HHHHHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 9998743 00 011235578999999999999988765643
No 19
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=99.97 E-value=6.2e-33 Score=261.99 Aligned_cols=195 Identities=26% Similarity=0.361 Sum_probs=145.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcc---hhhHHHHHhhcc
Q psy11379 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDA---IYTEKMIKKVGL 94 (306)
Q Consensus 18 ~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~---~YT~~ei~~l~~ 94 (306)
|+|||+|||+||||+|+++||++||.||.+|+|+|||||+|+||||++++++|+++..|+++... +||++|+++|+.
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998755 999999999999
Q ss_pred ccccccccccccccceeeeeeeeeee-cCCCCCcc-----------------cceecCCCCCcCHHHHHHHHhHHhhcCc
Q psy11379 95 GARKMTLCNSTLVPFLFQIIRVQTIE-DFPQFPHR-----------------GLLVDGSRHYLPIKAIKKQLDIMSYNKL 156 (306)
Q Consensus 95 ~ar~~~i~~~~lVp~l~~~~~~~~I~-D~P~~~~R-----------------g~~lD~~r~~~~~~~i~~~id~ma~~k~ 156 (306)
+|+.+|| ++||+++.|+|...+. ..|.+... ...+|.+.. -..+.+++++++++..-
T Consensus 81 yA~~~gI---~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~t~~~~~~l~~e~~~~f- 155 (351)
T PF00728_consen 81 YAKERGI---EVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNP-ETYEFLKDLLDEVADLF- 155 (351)
T ss_dssp HHHHTT----EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSH-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCC---ceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcH-HHHHHHHHHHHHHHhhC-
Confidence 9999999 9999999999987754 34654432 124666542 13677778887776532
Q ss_pred ceeEEEeecCCccccccccCCCcccc---CCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCc
Q psy11379 157 NVLHWHLVDDQSFPYESKKFPSLSLK---GAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTP 217 (306)
Q Consensus 157 N~l~lHi~dde~~~~~~~~~p~l~~~---g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~P 217 (306)
+.-++|||+||.+.-.+...|.+.+. ..+.....+-...++++.++++++|.+++---|+.
T Consensus 156 ~~~~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~ 219 (351)
T PF00728_consen 156 PSKYIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDML 219 (351)
T ss_dssp TSSEEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTT
T ss_pred CCCeEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEcccc
Confidence 25589999999986556555554321 11111112234568899999999999988755543
No 20
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=244.45 Aligned_cols=207 Identities=25% Similarity=0.296 Sum_probs=158.5
Q ss_pred CccccceeEEecCCCCccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCc--
Q psy11379 4 DEIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-- 81 (306)
Q Consensus 4 ~~~~~~~~i~d~p~~~~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~-- 81 (306)
+..+|..+|.|+|||.|||+|+|+||||.|.+.+|++||.||.+|+|+|||||+||||||+||+++|+|+..|+++..
T Consensus 247 ~~~~p~~~I~DaPRf~~rGllvDvaRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de 326 (732)
T COG3525 247 DIRFPAVTIVDAPRFAWRGLLVDVARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDE 326 (732)
T ss_pred CeeeeeeecccCcccchhhhhHhhhhhcCCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCC
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999996543
Q ss_pred --------------chhhHHHHHhhccccccccccccccccceeeeeeee-eeecCC----CCC----cccc--eecC--
Q psy11379 82 --------------AIYTEKMIKKVGLGARKMTLCNSTLVPFLFQIIRVQ-TIEDFP----QFP----HRGL--LVDG-- 134 (306)
Q Consensus 82 --------------~~YT~~ei~~l~~~ar~~~i~~~~lVp~l~~~~~~~-~I~D~P----~~~----~Rg~--~lD~-- 134 (306)
++||++++++++.||..+.| ++||++++++|.. .+...| ..+ .+.+ .++.
T Consensus 327 ~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~I---tviPeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~l 403 (732)
T COG3525 327 PDLPQLGYGPERMGGFYTQDDIRELVAYASARQI---TVIPEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVL 403 (732)
T ss_pred cCCcccccCcccccCcccHHHHHHHHHHHhhcCc---eecCCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccc
Confidence 79999999999999988888 8999999999965 477777 111 1111 0111
Q ss_pred -CCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCcccccccc-CCCccc---cCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q psy11379 135 -SRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKK-FPSLSL---KGAFGPDAIYTEKMIKSVIEYARLRGIR 209 (306)
Q Consensus 135 -~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~-~p~l~~---~g~~~~~~~yt~~~v~~l~~~a~~~gi~ 209 (306)
..--...+++.+.+++++.+ +..-.||+|+||.-..+|+. .|.... ..+......+---.++++-++-+++|++
T Consensus 404 n~tl~~t~~fldkv~dEv~~l-fPs~~iHiGgDE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~ 482 (732)
T COG3525 404 NPTLDPTYQFLDKVLDEVADL-FPSTTIHIGGDEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRR 482 (732)
T ss_pred cccccHHHHHHHHHHHHHHHh-CCcceEEeccchhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCce
Confidence 00001256677777777776 56668999999998888887 454442 2222222223333567777777888888
Q ss_pred EEecc
Q psy11379 210 VIPEI 214 (306)
Q Consensus 210 vIPei 214 (306)
+|-+-
T Consensus 483 ~igW~ 487 (732)
T COG3525 483 LIGWD 487 (732)
T ss_pred EEeec
Confidence 77654
No 21
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=99.91 E-value=4.5e-25 Score=204.46 Aligned_cols=182 Identities=18% Similarity=0.201 Sum_probs=138.2
Q ss_pred ccceeeecCC-CCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhcccccc
Q psy11379 20 HRGLLVDGSR-HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARK 98 (306)
Q Consensus 20 ~rg~~lD~~R-~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~ 98 (306)
+||+|||+|| +++++++||++||.||.+|+|+||||++|+ |+ ++++|++.. .+..||++|+++|..+|+.
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~--~~~~p~~~~-----~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FP--YEGEPEVGR-----MRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--ee--cCCCccccc-----CCCCcCHHHHHHHHHHHHH
Confidence 5999999999 999999999999999999999999999995 44 457787743 2468999999999999999
Q ss_pred ccccccccccceeeeeeeeeeecCCCCCccc------ceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccc
Q psy11379 99 MTLCNSTLVPFLFQIIRVQTIEDFPQFPHRG------LLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172 (306)
Q Consensus 99 ~~i~~~~lVp~l~~~~~~~~I~D~P~~~~Rg------~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~ 172 (306)
+|| ++||+++.++|...+...|+|..-. -.||++. .-+.+.+++++++++... ..=++|||+||.|.++
T Consensus 72 ~gI---~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~-~~t~~fi~~li~ev~~~f-~s~~~HIG~DE~~~~g 146 (301)
T cd06565 72 LGI---EVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGE-PKTYDFIEEMIRQVLELH-PSKYIHIGMDEAYDLG 146 (301)
T ss_pred cCC---EEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCC-hhHHHHHHHHHHHHHHhC-CCCeEEECCCcccccC
Confidence 999 9999999999988877777765321 2355544 224788888888887652 2457899999999765
Q ss_pred cccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 173 SKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 173 ~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
...+.+.. +... ....-.+.++++.++++++|.+++---|+.-
T Consensus 147 ~~~~~~~~--~~~~-~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~ 189 (301)
T cd06565 147 RGRSLRKH--GNLG-RGELYLEHLKKVLKIIKKRGPKPMMWDDMLR 189 (301)
T ss_pred CCHHHHHh--cCCC-HHHHHHHHHHHHHHHHHHcCCEEEEEhHHhc
Confidence 43322211 1111 1223457899999999999999887666543
No 22
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=99.26 E-value=3.5e-12 Score=119.75 Aligned_cols=59 Identities=24% Similarity=0.468 Sum_probs=54.5
Q ss_pred CcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCC
Q psy11379 126 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG 186 (306)
Q Consensus 126 ~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~ 186 (306)
.+||+|||++|+|+|+++||++||.||.+|+|.||||++| +|+++++.+|.++..|++.
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~ 59 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYA 59 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhh
Confidence 4799999999999999999999999999999999999999 7899999999998766553
No 23
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.22 E-value=0.0064 Score=56.84 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=88.0
Q ss_pred cccceecCCC--CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccc-cccccCCCccccCCCCCCCCCCHHHHHHHHHHH
Q psy11379 127 HRGLLVDGSR--HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP-YESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYA 203 (306)
Q Consensus 127 ~Rg~~lD~~r--~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~-~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a 203 (306)
.||+=|++.. .+...+.+.++++.+...++|.+.++.--. +.. +.++-.|....... .+...-..+-++.+++.|
T Consensus 2 ~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~-gda~Y~S~~~p~s~~~~g-~~~~~pg~DpL~~~I~ea 79 (311)
T PF02638_consen 2 FRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRPR-GDALYPSDIEPWSGYLTG-KQGKDPGFDPLEFMIEEA 79 (311)
T ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEeC-cEEEecccccccccccCC-CCCCCCCccHHHHHHHHH
Confidence 4666555432 222468899999999999999986655432 222 23333332111000 001111234599999999
Q ss_pred HHcCCeEEeccC--Cchhh-hhhhhcCCccccCC-CC--Ccc--CCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEE
Q psy11379 204 RLRGIRVIPEID--TPGHT-DSMEPGMPQIHCHC-PH--RVE--GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVH 275 (306)
Q Consensus 204 ~~~gi~vIPeid--~PgH~-~~~~~~~p~l~~~~-~~--~~~--~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~h 275 (306)
+++||+|.+-+. +.++. ..+.+.+|+..... .. ... +.....-|||.+|++.+++.+++.|+....+-.=||
T Consensus 80 HkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIh 159 (311)
T PF02638_consen 80 HKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIH 159 (311)
T ss_pred HHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 999999998762 22222 22334455542211 11 000 001134699999999999999999999988766667
Q ss_pred e
Q psy11379 276 L 276 (306)
Q Consensus 276 i 276 (306)
+
T Consensus 160 l 160 (311)
T PF02638_consen 160 L 160 (311)
T ss_pred e
Confidence 4
No 24
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.067 Score=51.71 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=89.3
Q ss_pred CCcccceec--CCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccc-cCCCCCCCCCCHHHHHHHHH
Q psy11379 125 FPHRGLLVD--GSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL-KGAFGPDAIYTEKMIKSVIE 201 (306)
Q Consensus 125 ~~~Rg~~lD--~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~-~g~~~~~~~yt~~~v~~l~~ 201 (306)
=+.||+=++ ..+....-..+++.++.+..+.+|.+..-+..+-.=-+.+...|.-.. .|.......| +-+..+++
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~--DpLa~~I~ 122 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGY--DPLAFVIA 122 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCC--ChHHHHHH
Confidence 467899887 344555678999999999999999997655433211222222232221 1111112233 34899999
Q ss_pred HHHHcCCeEEeccCCchhh---hhhhhcCCccccCCCC-C---ccCCc-cccCcCCCChhHHHHHHHHHHHHHhhCCCC
Q psy11379 202 YARLRGIRVIPEIDTPGHT---DSMEPGMPQIHCHCPH-R---VEGKT-FVGPLDPTKNVTLDFVRDLFTELGQRFPES 272 (306)
Q Consensus 202 ~a~~~gi~vIPeid~PgH~---~~~~~~~p~l~~~~~~-~---~~~~~-~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~ 272 (306)
.|+++|++|+|-++.-.=+ ..+.+.+|+-...... . .++.. ..-.|||..|++-+|+.+++-|+..-++..
T Consensus 123 ~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvD 201 (418)
T COG1649 123 EAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVD 201 (418)
T ss_pred HHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987642222 1222334443322111 0 00100 244799999999999999999998776643
No 25
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.18 E-value=0.17 Score=47.38 Aligned_cols=123 Identities=19% Similarity=0.173 Sum_probs=85.6
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhh
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~ 220 (306)
.+.+.++++.+-..++|.+-+-+-||.|.-.---..|.....|+.. .+ ..++++|++.++++||-+|--|-++--.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~---~~-i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK---PY-IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc---cc-ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 3678889999999999999999999987643223344444455432 12 3589999999999999999887665433
Q ss_pred hhhhhcCCccccCCCC-Ccc-CCccccCcCCCChhHHHHHHHHHHHHHhh
Q psy11379 221 DSMEPGMPQIHCHCPH-RVE-GKTFVGPLDPTKNVTLDFVRDLFTELGQR 268 (306)
Q Consensus 221 ~~~~~~~p~l~~~~~~-~~~-~~~~~~~l~~~~~~t~~~~~~l~~e~~~~ 268 (306)
... ..+|++...... ..+ ......-+||.++++++.+-+|.+|.+.+
T Consensus 88 ~la-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 88 VLA-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred HHh-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 222 247776552111 111 11124579999999999999999999863
No 26
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.92 E-value=0.38 Score=39.22 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=76.5
Q ss_pred HHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhh
Q psy11379 145 KKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSME 224 (306)
Q Consensus 145 ~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~ 224 (306)
+++++.+...+.|.+.+...+-.+|.+ ||.-. |.- ...+..+-++++++-|+++||+|+--++.--+... .
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~~--~~~--hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~-~ 73 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTKV--GPR--HPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDA-A 73 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCCC--CcC--CCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHH-H
Confidence 467888888999999887765444433 44322 111 23345667899999999999999999887644333 3
Q ss_pred hcCCccccCCCCCc------cCCccccCcCCCChhHHHHHHHHHHHHHhhCCC
Q psy11379 225 PGMPQIHCHCPHRV------EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 271 (306)
Q Consensus 225 ~~~p~l~~~~~~~~------~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 271 (306)
+.+||......+.. ...+....+++. ..-.+++...++|+++.++-
T Consensus 74 ~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 74 ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIREILDRYDV 125 (132)
T ss_pred HhCCceeeECCCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHHHHHcCCC
Confidence 57999876443311 011122345554 44558999999999988763
No 27
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=94.18 E-value=0.52 Score=45.57 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=79.5
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeE----EeccC
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRV----IPEID 215 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~v----IPeid 215 (306)
..+.++++++.++..+++.|.+ |.+|--... ......|.|.+...--+.-++.|+++++++|++. -||.=
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~r~--~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVI----DDGWFGGRD--DDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-----SSSBCTES--TTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhCCEEEEE----cCccccccC--CCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 4589999999999999998887 556643311 1223345565544444556999999999999874 44432
Q ss_pred CchhhhhhhhcCCccccCCCCCc--cCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEe
Q psy11379 216 TPGHTDSMEPGMPQIHCHCPHRV--EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHL 276 (306)
Q Consensus 216 ~PgH~~~~~~~~p~l~~~~~~~~--~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hi 276 (306)
.| -..+.+.+|+......... .+. ....||.++|++.+++.+.+.++..-..-.||-+
T Consensus 130 ~~--~S~l~~~hPdw~l~~~~~~~~~~r-~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~ 189 (394)
T PF02065_consen 130 SP--DSDLYREHPDWVLRDPGRPPTLGR-NQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW 189 (394)
T ss_dssp ES--SSCHCCSSBGGBTCCTTSE-ECBT-TBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred cc--hhHHHHhCccceeecCCCCCcCcc-cceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 22 2234456787664432211 111 2236999999999999999998876555556553
No 28
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=93.97 E-value=0.24 Score=47.31 Aligned_cols=139 Identities=17% Similarity=0.299 Sum_probs=81.8
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchh
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGH 219 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH 219 (306)
|.+.+++-++.|...++|.+.++.- +|.. -.|+ . +.|.=+.+.++++.|+++||.||.-+.+...
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~---~W~~---lEP~---e------G~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~ 72 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEF---SWSW---LEPE---E------GQYDFSWLDRVLDLAAKHGIKVILGTPTAAP 72 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CC---EHHH---H-SB---T------TB---HHHHHHHHHHHCTT-EEEEEECTTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---chhh---ccCC---C------CeeecHHHHHHHHHHHhccCeEEEEeccccc
Confidence 3478999999999999999987431 1211 1222 2 3455667999999999999999975543222
Q ss_pred hhhhhhcCCccccCCCCCc---cCCccccCcCCCChhHHHHHHHHHHHHHhhCCC-C---eEEecCCccCc-cccccCHH
Q psy11379 220 TDSMEPGMPQIHCHCPHRV---EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE-S---YVHLGGDEVDF-FCWEQNPE 291 (306)
Q Consensus 220 ~~~~~~~~p~l~~~~~~~~---~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~-~---~~hiGgDEv~~-~~~~~~p~ 291 (306)
=..+.+.+|+......... .| .....++.+|...+.+.++++.+.+.+.+ + -+||. -|... .|+ ||.
T Consensus 73 P~Wl~~~~Pe~~~~~~~g~~~~~g--~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~~~~~--~~~ 147 (374)
T PF02449_consen 73 PAWLYDKYPEILPVDADGRRRGFG--SRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGYHRCY--SPA 147 (374)
T ss_dssp -HHHHCCSGCCC-B-TTTSBEECC--CSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTCTS----SHH
T ss_pred ccchhhhcccccccCCCCCcCccC--CccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCcCcCC--ChH
Confidence 2333457888764332211 12 13456888999999999999999887763 3 45665 56543 333 343
Q ss_pred ----HHHHHHh
Q psy11379 292 ----IKAFMSS 298 (306)
Q Consensus 292 ----~~~~~~~ 298 (306)
.++||++
T Consensus 148 ~~~~f~~wLk~ 158 (374)
T PF02449_consen 148 CQAAFRQWLKE 158 (374)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4556654
No 29
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=93.96 E-value=0.21 Score=45.76 Aligned_cols=110 Identities=10% Similarity=0.132 Sum_probs=64.5
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch-
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG- 218 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg- 218 (306)
..+..|++||-.|.+++..+.+ |++|.-... ....+....+...++++|++||+++||.|+--.+.-+
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~-------~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~ 98 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEK-------DDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG 98 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS---------TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccc-------cccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 5799999999999999998877 888864111 0111222445667899999999999998887544332
Q ss_pred --------hhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 219 --------HTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 219 --------H~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
++..+++.+.++.... -..+-++-...++.++.++++++.++
T Consensus 99 ~~~~~~~~~~~~~f~~~~~~Gv~G-------vKidF~~~d~Q~~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 99 GNVANLEKQLDEAFKLYAKWGVKG-------VKIDFMDRDDQEMVNWYEDILEDAAE 148 (273)
T ss_dssp TBHHHHHCCHHHHHHHHHHCTEEE-------EEEE--SSTSHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHcCCCE-------EeeCcCCCCCHHHHHHHHHHHHHHHH
Confidence 0111111111111100 01234555778999999999999876
No 30
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.61 E-value=9.2 Score=39.36 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=68.7
Q ss_pred CHHH-HHHHHhHHhhcCcceeEEEeec----CCccccccccCCCccccCCCCC-CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 140 PIKA-IKKQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGP-DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 140 ~~~~-i~~~id~ma~~k~N~l~lHi~d----de~~~~~~~~~p~l~~~g~~~~-~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
.... +.++|+-+..+++|.++|---- +..|.+....| +.+ ..+=|.+++++||+.|.++||.||-+
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y--------~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGY--------FAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCc--------CcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4344 4466799999999999862211 01122221111 111 23338999999999999999999988
Q ss_pred cCCchhhhhhhhcCCccccC-CCC--Cc-cCC-c--cccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 214 IDTPGHTDSMEPGMPQIHCH-CPH--RV-EGK-T--FVGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 214 id~PgH~~~~~~~~p~l~~~-~~~--~~-~~~-~--~~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
+- +.|+..-..+.+.+... .+. .+ .+. + ....+|-.+|++.+++.+.+.-.++-|
T Consensus 240 ~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~ 301 (633)
T PRK12313 240 WV-PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY 301 (633)
T ss_pred EC-CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 64 67774210000111000 000 00 000 0 123578889999999988877776543
No 31
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=86.57 E-value=12 Score=38.43 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=67.8
Q ss_pred HHHHHHhHHhhcCcceeEEEe-ec---CCccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccCCc
Q psy11379 143 AIKKQLDIMSYNKLNVLHWHL-VD---DQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEIDTP 217 (306)
Q Consensus 143 ~i~~~id~ma~~k~N~l~lHi-~d---de~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid~P 217 (306)
.+.++|+-+..+++|.++|-- .. +..|.+....| +.+. .+=|.+++++||+.|.++||.||-++- +
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V-~ 228 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--------YAPTSRFGTPDDFMYFVDACHQAGIGVILDWV-P 228 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--------cccccccCCHHHHHHHHHHHHHCCCEEEEEec-c
Confidence 344557999999999998721 11 01122221111 1122 233899999999999999999998764 5
Q ss_pred hhhhhh---hhc---CCccccCCCC----CccCCccccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 218 GHTDSM---EPG---MPQIHCHCPH----RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 218 gH~~~~---~~~---~p~l~~~~~~----~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
.|+..- +.. .|.....+.. ..++ ...+|..+|++.+++.+.++-.++-|
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~---~~~~~~~~~~Vr~~l~~~~~~W~~ey 287 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWG---TLIFDYGRPEVRNFLVANALYWAEFY 287 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCC---CceecCCCHHHHHHHHHHHHHHHHHh
Confidence 777521 111 1111111100 0111 22578899999999998888877654
No 32
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=85.58 E-value=10 Score=38.83 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=50.2
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccc-----cCCCCCCCCC-CHHHHHHHHHHHHHcCCeEEecc
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL-----KGAFGPDAIY-TEKMIKSVIEYARLRGIRVIPEI 214 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~-----~g~~~~~~~y-t~~~v~~l~~~a~~~gi~vIPei 214 (306)
.+...++|+-++.++++.+.|=- +..+|.-.. .|-|.|...| |++++|++|+.|.++||.||-..
T Consensus 164 ~e~a~~llpYl~elG~T~IELMP---------v~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMP---------VAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcc---------cccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 57777889999999999876521 222333221 1233444444 99999999999999999999653
Q ss_pred CCchhhh
Q psy11379 215 DTPGHTD 221 (306)
Q Consensus 215 d~PgH~~ 221 (306)
+|||..
T Consensus 235 -V~~HF~ 240 (628)
T COG0296 235 -VPNHFP 240 (628)
T ss_pred -cCCcCC
Confidence 788885
No 33
>smart00642 Aamy Alpha-amylase domain.
Probab=85.07 E-value=4.1 Score=34.37 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=47.6
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecC------CccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDD------QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dd------e~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
.+..+.+-++.+..+++|.+++----. ..+.+....+-.+. ...=|.++++++++-|+++||+||-+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~-------~~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID-------PRFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC-------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 356777777888999999998722100 00111111111111 12238899999999999999999987
Q ss_pred cCCchhhhh
Q psy11379 214 IDTPGHTDS 222 (306)
Q Consensus 214 id~PgH~~~ 222 (306)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 6 4567654
No 34
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.12 E-value=17 Score=38.14 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=67.7
Q ss_pred HHHHHHhHHhhcCcceeEEEeecC----CccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccCCc
Q psy11379 143 AIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEIDTP 217 (306)
Q Consensus 143 ~i~~~id~ma~~k~N~l~lHi~dd----e~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid~P 217 (306)
...++|+-+..+++|.++|----. .+|.+... +-+.+. .+=|.++++++|+.|.++||.||-++- |
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~--------~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V-~ 341 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPL--------GLYAPTARHGSPDGFAQFVDACHRAGIGVILDWV-S 341 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCC--------cCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec-c
Confidence 344567889999999887632211 11222111 122222 233899999999999999999998864 7
Q ss_pred hhhhhhhhcCCcccc-CCCC--Cc-cCC-cc--ccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 218 GHTDSMEPGMPQIHC-HCPH--RV-EGK-TF--VGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 218 gH~~~~~~~~p~l~~-~~~~--~~-~~~-~~--~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
+|+..-..+...+.. ..+. .+ .|. .. ...+|-.+|++.+|+.+.+.-.++.|
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh
Confidence 887532111111100 0010 00 011 01 12468899999999888777666544
No 35
>PRK14706 glycogen branching enzyme; Provisional
Probab=81.92 E-value=17 Score=37.56 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=68.1
Q ss_pred CcC-HHHHHHHHhHHhhcCcceeEEEeecC----CccccccccCCCccccCCCCCCC-CCCHHHHHHHHHHHHHcCCeEE
Q psy11379 138 YLP-IKAIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDA-IYTEKMIKSVIEYARLRGIRVI 211 (306)
Q Consensus 138 ~~~-~~~i~~~id~ma~~k~N~l~lHi~dd----e~~~~~~~~~p~l~~~g~~~~~~-~yt~~~v~~l~~~a~~~gi~vI 211 (306)
+.. .+.+.++++-+..+++|.+++--... ..|.+....| +.+.. +=|.++++++|+.|.++||.||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~--------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY--------YAPTSRLGTPEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc--------cccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 344 34555667888889999887622111 1122111111 12222 3389999999999999999999
Q ss_pred eccCCchhhhh---hhhcC---CccccC----CCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 212 PEIDTPGHTDS---MEPGM---PQIHCH----CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 212 Peid~PgH~~~---~~~~~---p~l~~~----~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
.++ ++.|+.. .+... |..... .+...++ ...+|..++++.+|+.+...-..+-|
T Consensus 235 lD~-v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~---~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 235 LDW-VPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWN---TYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEe-cccccCcchhhhhccCCCcceeccCCcCCcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 876 4567632 11111 100000 0001111 22478889999999988777766544
No 36
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=81.12 E-value=16 Score=33.80 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=66.1
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
..+-+.++++++.+...++..=.+++-+ .|.-. .|.+.-. ..+. +.+++++..+++|+++++-++=
T Consensus 26 ~~s~~~v~~~~~~~~~~~iP~d~i~iD~--~w~~~---------~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 26 DINQETVLNYAQEIIDNGFPNGQIEIDD--NWETC---------YGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCeEEeCC--Ccccc---------CCccccChhhCC--CHHHHHHHHHHCCCeEEEEECC
Confidence 3456899999999999998765666533 23211 1222111 1222 3789999999999999886651
Q ss_pred ---chhhhhhh--hcCCccccCCCC-Cc-cCC---ccccCcCCCChhHHHHHHHHHHHHH
Q psy11379 217 ---PGHTDSME--PGMPQIHCHCPH-RV-EGK---TFVGPLDPTKNVTLDFVRDLFTELG 266 (306)
Q Consensus 217 ---PgH~~~~~--~~~p~l~~~~~~-~~-~~~---~~~~~l~~~~~~t~~~~~~l~~e~~ 266 (306)
+.+. .+. ....-+...... .+ .+. .....+|.+||++.++..+.++++.
T Consensus 93 ~i~~~s~-~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 93 FINTDSE-NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred eeCCCCH-HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 1110 111 011111111000 00 000 0245799999999999999998887
No 37
>PRK14705 glycogen branching enzyme; Provisional
Probab=79.16 E-value=21 Score=39.53 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred HHHHHHHhHHhhcCcceeEEEeecC----CccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 142 KAIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~lHi~dd----e~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
+.+.++|+-+..+++|.++|---.. .+|.+.... -+.+. .+=|++|+|.+|+.|.++||.||-++ +
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~--------y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V 836 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTS--------YFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-V 836 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccc--------cCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 3345667888889999887632211 122222111 11222 23389999999999999999999764 6
Q ss_pred chhhh--hh-hhcC---CccccC-C---CCCccCCccccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 217 PGHTD--SM-EPGM---PQIHCH-C---PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 217 PgH~~--~~-~~~~---p~l~~~-~---~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
|+|+. .| +... +-.... + ....+| ...+|-.++++.+|+.+...-..+.|
T Consensus 837 ~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg---~~~fn~~~~eVr~fli~~a~~Wl~ey 896 (1224)
T PRK14705 837 PAHFPKDSWALAQFDGQPLYEHADPALGEHPDWG---TLIFDFGRTEVRNFLVANALYWLDEF 896 (1224)
T ss_pred cccCCcchhhhhhcCCCcccccCCcccCCCCCCC---CceecCCCHHHHHHHHHHHHHHHHHh
Confidence 67773 22 1111 100000 0 001122 23578899999999988777776654
No 38
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=78.56 E-value=10 Score=35.54 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=64.3
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCC-ccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPS-LSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~-l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
+-+.+.++++.+...++..=.+++-|..... ....-. ....=.+++ ..+ -+.+++++.-+++|+++++-|+ |+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~--~~~~g~~~~~~f~~d~-~~F--Pdp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRR--ETSFGDRLWWNWEWDP-ERY--PGLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcc--cccccceeeeeeEECh-hhC--CCHHHHHHHHHHCCCEEEEEec-Cc
Confidence 7799999999999998887777774321100 000000 000000111 111 1478999999999999998776 22
Q ss_pred hh----hhhhhc-CCccccCCCC-Cc-cCC---ccccCcCCCChhHHHHHHHHHHHH
Q psy11379 219 HT----DSMEPG-MPQIHCHCPH-RV-EGK---TFVGPLDPTKNVTLDFVRDLFTEL 265 (306)
Q Consensus 219 H~----~~~~~~-~p~l~~~~~~-~~-~~~---~~~~~l~~~~~~t~~~~~~l~~e~ 265 (306)
-. .....+ ..+......+ .+ .+. .....+|.+||++.+...+.+++.
T Consensus 95 v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 95 LADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred eecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 11 100100 0011111100 00 000 023579999999999998888876
No 39
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=78.27 E-value=8.4 Score=38.87 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=46.5
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEe
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-------DAIYTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~-------~~~yt~~~v~~l~~~a~~~gi~vIP 212 (306)
.+.-+.+-++.+..++++.+++-- .++.+. ....|.. ..+=|.+++++|++.|+++||+||-
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~P------i~~~~~-----~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNP------FYVSPQ-----KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECC------cccCCC-----CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 356777778899999999988721 111110 0112221 1233889999999999999999998
Q ss_pred ccCCchhhh
Q psy11379 213 EIDTPGHTD 221 (306)
Q Consensus 213 eid~PgH~~ 221 (306)
++ +|.|+.
T Consensus 94 D~-v~NH~~ 101 (543)
T TIGR02403 94 DM-VFNHTS 101 (543)
T ss_pred EE-Cccccc
Confidence 75 456663
No 40
>PRK03705 glycogen debranching enzyme; Provisional
Probab=77.96 E-value=27 Score=36.24 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCcccc-----CCCC--CccCC-----ccccCcCCCChhHHHHHHH
Q psy11379 193 EKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC-----HCPH--RVEGK-----TFVGPLDPTKNVTLDFVRD 260 (306)
Q Consensus 193 ~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~-----~~~~--~~~~~-----~~~~~l~~~~~~t~~~~~~ 260 (306)
.+|+|+||+.|.++||+||-++ ++.|+.......|.+.. ..+. ...+. ...+.+|..+|.+.+++.+
T Consensus 241 ~~efk~LV~~~H~~GI~VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 241 LDEFRDAVKALHKAGIEVILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 3699999999999999999876 44666532111111100 0000 00010 0124788889999999998
Q ss_pred HHHHHHhhCC
Q psy11379 261 LFTELGQRFP 270 (306)
Q Consensus 261 l~~e~~~~f~ 270 (306)
.++-..+.|.
T Consensus 320 ~l~~W~~e~g 329 (658)
T PRK03705 320 CLRYWVETCH 329 (658)
T ss_pred HHHHHHHHhC
Confidence 8887776554
No 41
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=77.82 E-value=36 Score=34.40 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecC----CccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dd----e~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
...+.+-++.+..+++|.++|----+ ..|.+....+ +.+. .+=|.++++++|+.|.++||.||-++-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~--------~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLP--------YAPHNAYGGPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCc--------cccccccCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 46666667889999999998732211 1122111111 1112 233899999999999999999998764
Q ss_pred Cchhhh
Q psy11379 216 TPGHTD 221 (306)
Q Consensus 216 ~PgH~~ 221 (306)
+.|++
T Consensus 182 -~NH~~ 186 (542)
T TIGR02402 182 -YNHFG 186 (542)
T ss_pred -cCCCC
Confidence 46764
No 42
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=77.67 E-value=34 Score=35.68 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCcc-----ccCCCC--------CccCCc-cccCcCCCChhHHHH
Q psy11379 192 TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQI-----HCHCPH--------RVEGKT-FVGPLDPTKNVTLDF 257 (306)
Q Consensus 192 t~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l-----~~~~~~--------~~~~~~-~~~~l~~~~~~t~~~ 257 (306)
+.+|+|+||+.|.++||+||-++ ++.|+..-....|.. ....+. ...... .-+.+|..+|.+.++
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 67899999999999999999876 446775321111111 000000 000000 124688899999999
Q ss_pred HHHHHHHHHhhCC
Q psy11379 258 VRDLFTELGQRFP 270 (306)
Q Consensus 258 ~~~l~~e~~~~f~ 270 (306)
+.+.+.-...-+.
T Consensus 322 i~d~l~~W~~e~g 334 (688)
T TIGR02100 322 VMDSLRYWVTEMH 334 (688)
T ss_pred HHHHHHHHHHHcC
Confidence 9888777765443
No 43
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=76.42 E-value=38 Score=31.30 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=65.8
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
+..-+.++++++.+...++.+-.+.+.++ |.-... .+.+.-. ..+. +.+++++..+++|+.++.-++
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~--w~~~~~-------~~~f~~d~~~FP--d~~~~i~~l~~~G~~~~~~~~- 87 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCF--WMKEFQ-------WCDFEFDPDRFP--DPEGMLSRLKEKGFKVCLWIN- 87 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecc--cccCCc-------ceeeEECcccCC--CHHHHHHHHHHCCCeEEEEec-
Confidence 35678999999999999988766555432 210000 0011100 1111 368899999999999988765
Q ss_pred chhh---hhhhhc-CCccccCCCC-Cc-cC---CccccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 217 PGHT---DSMEPG-MPQIHCHCPH-RV-EG---KTFVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 217 PgH~---~~~~~~-~p~l~~~~~~-~~-~~---~~~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
|.=. ..+.+. .++......+ .+ .+ ......+|.++|++.++..+.++++.+
T Consensus 88 P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 88 PYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred CCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 2100 001100 0111111000 00 00 012357999999999999999998875
No 44
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.17 E-value=7.8 Score=34.87 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=43.6
Q ss_pred HHHHHHHhHHhhcCcceeEEEe---ecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 142 KAIKKQLDIMSYNKLNVLHWHL---VDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~lHi---~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
.-|.+-|+.+..+++|.+++-- .....+.+....|-.+ ....=|.+|+++|++.|+++||.||-.+ ++.
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~v-------d~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~N 75 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAV-------DPRFGTMEDFKELVDAAHKRGIKVILDV-VPN 75 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEE-------STTTBHHHHHHHHHHHHHHTTCEEEEEE-ETS
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeecc-------ccccchhhhhhhhhhccccccceEEEee-ecc
Confidence 4566667888999999988621 0001111111111000 0233389999999999999999999665 345
Q ss_pred hh
Q psy11379 219 HT 220 (306)
Q Consensus 219 H~ 220 (306)
|+
T Consensus 76 H~ 77 (316)
T PF00128_consen 76 HT 77 (316)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 45
>PLN02361 alpha-amylase
Probab=75.71 E-value=13 Score=36.07 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-------DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~-------~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
...|.+-++.++.++++.+++-- +.+.... ..|.+ ..+=|++|++++++-|+++||+||.+
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P------~~~~~~~------~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D 95 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPP------PSQSLAP------EGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMAD 95 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC------CCcCCCC------CCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 36777778889999999998732 1111110 11221 23348999999999999999999987
Q ss_pred cCCchhh
Q psy11379 214 IDTPGHT 220 (306)
Q Consensus 214 id~PgH~ 220 (306)
+= +.|+
T Consensus 96 ~V-~NH~ 101 (401)
T PLN02361 96 IV-INHR 101 (401)
T ss_pred Ec-cccc
Confidence 63 3565
No 46
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=75.47 E-value=27 Score=33.01 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCcccc----------CCCCCcchhhHHHHHhhccc-ccccc
Q psy11379 32 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK----------GAFGPDAIYTEKMIKKVGLG-ARKMT 100 (306)
Q Consensus 32 ~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~----------ga~~~~~~YT~~ei~~l~~~-ar~~~ 100 (306)
..++.|.+..+..|.+|-.-+-.|| |.||=|+-.+..+++-+. +-.+.+..++.+-+++|..+ -..++
T Consensus 141 Vd~eyLl~w~~kVa~~KgkglEaHl-DGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiN 219 (414)
T COG2100 141 VDPEYLLEWFEKVARFKGKGLEAHL-DGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRIN 219 (414)
T ss_pred ecHHHHHHHHHHHHhhhCCCeEEEe-cCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEE
Confidence 5589999999999999999999999 788877655444333221 11233455666666666433 22221
Q ss_pred ccccccccceeeeeeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCcc
Q psy11379 101 LCNSTLVPFLFQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 180 (306)
Q Consensus 101 i~~~~lVp~l~~~~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~ 180 (306)
.....+ -|+. .-+| .++..+.++.++++++.++..+++.+---+ | .
T Consensus 220 lSv~aL---------------Dpk~---Ak~L-~G~~dYdv~kvle~aE~i~~a~idvlIaPv-----~------l---- 265 (414)
T COG2100 220 LSVDAL---------------DPKL---AKML-AGRKDYDVKKVLEVAEYIANAGIDVLIAPV-----W------L---- 265 (414)
T ss_pred eecccC---------------CHHH---HHHh-cCccccCHHHHHHHHHHHHhCCCCEEEeee-----e------c----
Confidence 111111 1111 1111 456778899999999999999988773211 0 1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy11379 181 LKGAFGPDAIYTEKMIKSVIEYARLRG 207 (306)
Q Consensus 181 ~~g~~~~~~~yt~~~v~~l~~~a~~~g 207 (306)
.-|..+|+.+++++|++.|
T Consensus 266 --------PG~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 --------PGVNDDEMPKIIEWAREIG 284 (414)
T ss_pred --------CCcChHHHHHHHHHHHHhC
Confidence 1246779999999999987
No 47
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=75.00 E-value=48 Score=31.15 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhcccccccccc-ccccccceee
Q psy11379 34 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARKMTLC-NSTLVPFLFQ 112 (306)
Q Consensus 34 ~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~~~i~-~~~lVp~l~~ 112 (306)
.+.+.++|+.+...++|.+-.-+-|+.|.-.--+..|...+.|+.... ..+++++....+..+|- ...++-+-+-
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~----i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY----IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc----ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 467999999999999999999999999876655566777666765432 35666665555555541 2222222211
Q ss_pred e----eeeeeeecCCCCCccc----ceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCcccc-C
Q psy11379 113 I----IRVQTIEDFPQFPHRG----LLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK-G 183 (306)
Q Consensus 113 ~----~~~~~I~D~P~~~~Rg----~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~-g 183 (306)
. -|...+...-.-.|+. .-+|..+.- ..+.+.++..++|..++..+|+- .-.||.-... +
T Consensus 88 ~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~e-vw~Y~i~IA~Eaa~~GFdEIqfD----------YIRFP~~~~~~~ 156 (316)
T PF13200_consen 88 VLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKE-VWDYNIDIAKEAAKLGFDEIQFD----------YIRFPDEGRLSG 156 (316)
T ss_pred HHhhhChhhEEECCCCCcccCCCCCccCCCCCHH-HHHHHHHHHHHHHHcCCCEEEee----------eeecCCCCcccc
Confidence 1 1222332222222221 123333311 15667778888899999988872 2334441100 0
Q ss_pred -CCCCCCCC---CHHHHHHHHHHHHHc--CCeEEeccCCchhhh
Q psy11379 184 -AFGPDAIY---TEKMIKSVIEYARLR--GIRVIPEIDTPGHTD 221 (306)
Q Consensus 184 -~~~~~~~y---t~~~v~~l~~~a~~~--gi~vIPeid~PgH~~ 221 (306)
.+. .... -.+-|.+++++|++. -..+.-.+|++|-..
T Consensus 157 l~y~-~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~ 199 (316)
T PF13200_consen 157 LDYS-ENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVA 199 (316)
T ss_pred cccC-CCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEeccccc
Confidence 111 1111 236688888888532 112344667777664
No 48
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.60 E-value=21 Score=33.35 Aligned_cols=120 Identities=9% Similarity=-0.016 Sum_probs=64.8
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCC--CCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA--FGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~--~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
+.+-+.+.++++.+...++.+=-+++..+ |.-. ...-...|. |+ ...|. +.+++++..+++|+++++-++
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--w~~~---~~~~~~~~~f~wd-~~~FP--dp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLY--WFGK---DIDKGHMGNLDWD-RKAFP--DPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEech--hhcC---cccCCceeeeEec-cccCC--CHHHHHHHHHHcCCcEEEEEc
Confidence 34678999999999888877655555331 2100 000000001 11 11121 367899999999999999876
Q ss_pred CchhhhhhhhcCCccccCCC------C-Cc-cCC---ccccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 216 TPGHTDSMEPGMPQIHCHCP------H-RV-EGK---TFVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 216 ~PgH~~~~~~~~p~l~~~~~------~-~~-~~~---~~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
--=...+ ..+.+.....+ . .+ .+. .....+|.+||++.+...+.++++.+
T Consensus 92 P~v~~~~--~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 152 (317)
T cd06598 92 PFVLKNS--KNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID 152 (317)
T ss_pred CcccCCc--hhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh
Confidence 2101100 01111111111 0 00 000 02458899999999999998888744
No 49
>PLN02960 alpha-amylase
Probab=74.54 E-value=41 Score=35.95 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=68.7
Q ss_pred CHHHH-HHHHhHHhhcCcceeEEEeec----CCccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 140 PIKAI-KKQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 140 ~~~~i-~~~id~ma~~k~N~l~lHi~d----de~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
+...+ .+.|+-+..+++|.++|---. ..+|.+.... -+.+. .+=|.++++.+|+.|.++||.||-+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~--------yfa~~~~yGtp~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTN--------FFAVSSRFGTPDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCccc--------CCCcccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 43444 467899999999998773221 1122221111 11122 2338999999999999999999987
Q ss_pred cCCchhhhhh----h---hcCCccc-cC---CCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 214 IDTPGHTDSM----E---PGMPQIH-CH---CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 214 id~PgH~~~~----~---~~~p~l~-~~---~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
+ +|.|+..- + .+.+... .. .+...+| ...+|..++++.+|+-+.+.-...-|
T Consensus 486 v-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG---~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 486 I-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWG---TRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred e-cccccCCccccchhhcCCCccceeecCCCCccCCCC---CcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5 55666421 1 1111110 00 0011122 34678999999999988766665433
No 50
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=73.19 E-value=14 Score=36.64 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHHhHHhhcCcceeEEEee-cCC----ccccccccCCCccc---cCCCCCCCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 142 KAIKKQLDIMSYNKLNVLHWHLV-DDQ----SFPYESKKFPSLSL---KGAFGPDAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~lHi~-dde----~~~~~~~~~p~l~~---~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
..|.+-++.+..++++.+++--- ... .+.+....+=.+.+ +|..+ ..+=|.+++++|++-|+++||.||-.
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id-~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR-TKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC-cCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45666678889999999977221 000 01111111111100 00111 23338999999999999999999987
Q ss_pred cCCchhhh
Q psy11379 214 IDTPGHTD 221 (306)
Q Consensus 214 id~PgH~~ 221 (306)
+ ++.|++
T Consensus 101 ~-V~NH~~ 107 (479)
T PRK09441 101 V-VLNHKA 107 (479)
T ss_pred E-Cccccc
Confidence 5 456664
No 51
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=72.39 E-value=49 Score=34.86 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHHHHhHHhhcCcceeEEEeecC----CccccccccCCCccccCCCCCC-CCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 144 IKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 144 i~~~id~ma~~k~N~l~lHi~dd----e~~~~~~~~~p~l~~~g~~~~~-~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
..+.++.+..+++|.++|----+ .+|.+....+ +.+. .+=|+++++++|+.|.++||.||-++ ++.
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~--------fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv-V~n 323 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNF--------FAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV-VHS 323 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccC--------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 46678999999999987632211 1222221111 1122 22378999999999999999999875 566
Q ss_pred hhhhhh-hcCCcccc--CCCC--CccCC-c--cccCcCCCChhHHHHHHHHHHHHHhhC
Q psy11379 219 HTDSME-PGMPQIHC--HCPH--RVEGK-T--FVGPLDPTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 219 H~~~~~-~~~p~l~~--~~~~--~~~~~-~--~~~~l~~~~~~t~~~~~~l~~e~~~~f 269 (306)
|+..-. .+...+.. .++. ...|. . ....+|-.++++.+|+.+.++-.++-|
T Consensus 324 H~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey 382 (758)
T PLN02447 324 HASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY 382 (758)
T ss_pred cccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 764210 00000100 0110 00011 0 123688889999999998877776643
No 52
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.76 E-value=16 Score=36.91 Aligned_cols=73 Identities=16% Similarity=0.320 Sum_probs=46.0
Q ss_pred HHHHHHHHhHHhhcCcceeEEEee---cCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCc
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLV---DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTP 217 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~---dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~P 217 (306)
+.-+.+-++.+..++++.+++--- ....+.+....|-.+. ...=|.+++++|++.|+++||.||-++ ++
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-------~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~ 103 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-------PTYGTLDDFDELVAQAKSRGIRIILDM-VF 103 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-------cccCCHHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 567777788999999999887210 0000111111111110 123389999999999999999999876 45
Q ss_pred hhhh
Q psy11379 218 GHTD 221 (306)
Q Consensus 218 gH~~ 221 (306)
.|+.
T Consensus 104 NH~s 107 (551)
T PRK10933 104 NHTS 107 (551)
T ss_pred CCcc
Confidence 6664
No 53
>KOG0259|consensus
Probab=71.58 E-value=7.9 Score=37.16 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEeccCCchhh
Q psy11379 188 DAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220 (306)
Q Consensus 188 ~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~ 220 (306)
+.+||.+.+++|.+.|+++||.||-+ ++-||+
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaD-EVY~~~ 244 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHT 244 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEeh-hhccee
Confidence 58999999999999999999999875 455665
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=70.94 E-value=14 Score=38.78 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=45.0
Q ss_pred HHHHHhHHhhcCcceeEEEeec----CCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchh
Q psy11379 144 IKKQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGH 219 (306)
Q Consensus 144 i~~~id~ma~~k~N~l~lHi~d----de~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH 219 (306)
+.++|+-+..+++|.++|---- +..|.+....|=.+. ..+-|.++++++|+.|.++||.||-++- |.|
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-------~~~Gt~~dfk~lV~~~H~~Gi~VilD~V-~NH 339 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-------SRFGTPDDFRYFVDACHQAGIGVILDWV-PAH 339 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-------cccCCHHHHHHHHHHHHHCCCEEEEEEC-CCC
Confidence 3455688899999999873211 112222222111111 2334899999999999999999998764 577
Q ss_pred hh
Q psy11379 220 TD 221 (306)
Q Consensus 220 ~~ 221 (306)
+.
T Consensus 340 ~~ 341 (726)
T PRK05402 340 FP 341 (726)
T ss_pred CC
Confidence 73
No 55
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=70.15 E-value=2.7 Score=33.19 Aligned_cols=51 Identities=8% Similarity=0.223 Sum_probs=37.7
Q ss_pred cCCCcceeecccCCccccCCCCCcchhhHHHHHhhccccccccccccccccceeeeeeeeeeecC
Q psy11379 58 DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARKMTLCNSTLVPFLFQIIRVQTIEDF 122 (306)
Q Consensus 58 d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~~~i~~~~lVp~l~~~~~~~~I~D~ 122 (306)
..+||++.+.. ..++..|+...|.+|..+.+.|+...... ..+|++.|.|+
T Consensus 74 ~~E~Y~L~i~~-~~I~I~a~~~~G~~yg~qTL~Qll~~~~~-------------~~lp~~~I~D~ 124 (124)
T PF02838_consen 74 GEEGYRLSISP-KGITIEASDPAGLFYGLQTLRQLLRQSGN-------------GTLPCVEIEDY 124 (124)
T ss_dssp TTT-EEEEEES-SEEEEEESSHHHHHHHHHHHHHHSBTCS--------------CEEEEEEEEE-
T ss_pred CCcceEEEEEC-CEEEEEEcCchHHHHHHHHHHHHhhccCC-------------CccceEEEEeC
Confidence 46799999988 57888888888999999999999654421 23667788774
No 56
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=69.10 E-value=30 Score=33.61 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=65.1
Q ss_pred cCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC--
Q psy11379 139 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT-- 216 (306)
Q Consensus 139 ~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~-- 216 (306)
...+.+.++++.+...++..=.+.+.++ |.-... .. .+++ ..+. +.+++++..+++|+++++-++-
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~--~~~~~~---~f----~~d~-~~FP--d~~~~~~~l~~~G~~~~~~~~P~v 107 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDD--YQDGYG---DF----TWDP-ERFP--DPKQMIDELHDQGIKVVLWVHPFV 107 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GG--GSBTTB---TT-----B-T-TTTT--THHHHHHHHHHTT-EEEEEEESEE
T ss_pred CCHHHHHHHHHHHHHcCCCccceecccc--cccccc---cc----cccc-cccc--chHHHHHhHhhCCcEEEEEeeccc
Confidence 3478999999999998888777766554 211111 11 1110 1111 5899999999999999885542
Q ss_pred --chh-hhhh--hhcCCccccCCCCCc-cCC--c-cccCcCCCChhHHHHHHHHHHHHHhhCCCC
Q psy11379 217 --PGH-TDSM--EPGMPQIHCHCPHRV-EGK--T-FVGPLDPTKNVTLDFVRDLFTELGQRFPES 272 (306)
Q Consensus 217 --PgH-~~~~--~~~~p~l~~~~~~~~-~~~--~-~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~ 272 (306)
.+. ...+ .+...-+.......+ .+. + ....+|.++|++.++..+.++++.+.+.-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 172 (441)
T PF01055_consen 108 SNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD 172 (441)
T ss_dssp ETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S
T ss_pred CCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc
Confidence 111 1111 111111111110000 000 0 145799999999999999999988875533
No 57
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=68.34 E-value=13 Score=34.62 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCH---HHHHHHHHHHHHcCCeEEec
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTE---KMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~---~~v~~l~~~a~~~gi~vIPe 213 (306)
..++.+.=+++++-|+.+|+|..-.=--|| |.... .|+ ..|+. +++++|++.|++.||+.|=-
T Consensus 10 ~PWs~e~R~~l~~f~~~~kmN~YiYAPKdD----------pyhr~--~Wr--e~Yp~~el~~l~~L~~~a~~~~V~Fv~a 75 (306)
T PF07555_consen 10 RPWSHEDRLDLIRFLGRYKMNTYIYAPKDD----------PYHRS--KWR--EPYPEEELAELKELADAAKANGVDFVYA 75 (306)
T ss_dssp S---HHHHHHHHHHHHHTT--EEEE--TT-----------TTTTT--TTT--S---HHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEECCCCC----------hHHHh--hhc--ccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 455678888999999999999764433333 33221 232 45554 56778888899999998765
Q ss_pred c
Q psy11379 214 I 214 (306)
Q Consensus 214 i 214 (306)
|
T Consensus 76 i 76 (306)
T PF07555_consen 76 I 76 (306)
T ss_dssp E
T ss_pred E
Confidence 4
No 58
>PLN00196 alpha-amylase; Provisional
Probab=67.43 E-value=27 Score=34.20 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=46.3
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC--------CCCCCHHHHHHHHHHHHHcCCeEEe
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP--------DAIYTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~--------~~~yt~~~v~~l~~~a~~~gi~vIP 212 (306)
...|.+-++.++.++++.+++-- ..+.. ... .|.+ ..+=|.+|++++++-|+++||+||-
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P------~~~s~-----s~h-GY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPP------PSHSV-----SEQ-GYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC------CCCCC-----CCC-CCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 46677888999999999998732 11110 001 1111 2344899999999999999999998
Q ss_pred ccCCchhhh
Q psy11379 213 EIDTPGHTD 221 (306)
Q Consensus 213 eid~PgH~~ 221 (306)
.+ ++.|+.
T Consensus 111 Dv-V~NH~~ 118 (428)
T PLN00196 111 DI-VINHRT 118 (428)
T ss_pred EE-CccCcc
Confidence 75 455664
No 59
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=66.49 E-value=74 Score=35.58 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCcccc-----CCCC--------CccCCc-cccCcCCCChhHHHH
Q psy11379 192 TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC-----HCPH--------RVEGKT-FVGPLDPTKNVTLDF 257 (306)
Q Consensus 192 t~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~-----~~~~--------~~~~~~-~~~~l~~~~~~t~~~ 257 (306)
+.+|+|++|+-|.++||+||-++ ++.|+..-....|.+.. ..+. ...... ..+.+|..++.+.++
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~ 323 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRL 323 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE-ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHH
Confidence 78999999999999999999875 45676432111121110 0000 000000 123567778899888
Q ss_pred HHHHHHHHHh
Q psy11379 258 VRDLFTELGQ 267 (306)
Q Consensus 258 ~~~l~~e~~~ 267 (306)
+.+.++-...
T Consensus 324 i~d~lr~Wv~ 333 (1221)
T PRK14510 324 PMDVLRSWAK 333 (1221)
T ss_pred HHHHHHHHHH
Confidence 8888777766
No 60
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.06 E-value=24 Score=36.04 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=47.2
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-------DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~-------~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
+.-|.+-++-+..+++|.++|-- -++..+. ..|.. ...=|.+++++|++-|+++||.||-+
T Consensus 178 l~GI~~kLdYL~~LGv~~I~L~P------if~s~s~------hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 178 LDGISEKLPYLKKLGVTALYLNP------IFTAPSV------HKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC------cccCCCC------CCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 67788888999999999998721 1111111 11111 23338899999999999999999987
Q ss_pred cCCchhhh
Q psy11379 214 IDTPGHTD 221 (306)
Q Consensus 214 id~PgH~~ 221 (306)
+ ++.|++
T Consensus 246 ~-V~NH~~ 252 (598)
T PRK10785 246 G-VFNHTG 252 (598)
T ss_pred E-CCCcCC
Confidence 5 446664
No 61
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=64.63 E-value=41 Score=31.66 Aligned_cols=118 Identities=10% Similarity=-0.031 Sum_probs=66.2
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
.+.+-+++.++++.+...++..=.+++..+ |.- .+... .|++ ..+. +.+++++..++.|+++++-++-
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~~---~~~~f----~~d~-~~FP--dp~~mi~~L~~~G~k~~~~~~P 86 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HTD---GKRYF----TWDK-KKFP--DPEKMQEKLASKGRKLVTIVDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--HhC---CCCce----EeCc-ccCC--CHHHHHHHHHHCCCEEEEEecC
Confidence 344679999999999998888766666322 110 01000 0111 1121 4688899999999999998762
Q ss_pred chhh-hhhhhcCCccccCCCC--CccCC-------c-cccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 217 PGHT-DSMEPGMPQIHCHCPH--RVEGK-------T-FVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 217 PgH~-~~~~~~~p~l~~~~~~--~~~~~-------~-~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
+-. ..-...+.+.....+- ...|+ + ....+|.+||++.+...+.++++..
T Consensus 87 -~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 87 -HIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred -ceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 111 0000001111100000 00111 0 2457999999999999999988863
No 62
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=64.56 E-value=21 Score=36.19 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=75.2
Q ss_pred ecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCcc--ccCCCCC--CCCCCHHH
Q psy11379 120 EDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS--LKGAFGP--DAIYTEKM 195 (306)
Q Consensus 120 ~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~--~~g~~~~--~~~yt~~~ 195 (306)
.|+-+|+..|++-|-... .+.+...+.|+.|..+.+|.+++. |--|+-..+ +|.-. -...|.. ....+.+-
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~P-l~~~~~~~~~~w~D~~~r~i~~~~ 171 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKP-LPGTNGQPDQTWTDWANRQISTST 171 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB--S-SSS-EEE-TT-TTT--EEEHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCc-CCCCCCchhhhhhhhcCCEehHHH
Confidence 477788888888774433 345889999999999999999863 111111111 11110 0012221 24456778
Q ss_pred HHHHHHHHHHcCCeEEeccCCchhhhhhhh--cCCcc--ccCCCCC-------ccC-CccccCcCCCChhHHHHHHHHHH
Q psy11379 196 IKSVIEYARLRGIRVIPEIDTPGHTDSMEP--GMPQI--HCHCPHR-------VEG-KTFVGPLDPTKNVTLDFVRDLFT 263 (306)
Q Consensus 196 v~~l~~~a~~~gi~vIPeid~PgH~~~~~~--~~p~l--~~~~~~~-------~~~-~~~~~~l~~~~~~t~~~~~~l~~ 263 (306)
||+.|+.|+++|+..++=.-+-|-...... ..|+. ...+... +.+ .+....+||.|+.=-++|-+=+.
T Consensus 172 Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~ 251 (559)
T PF13199_consen 172 VKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMN 251 (559)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHH
Confidence 999999999999999883322222211100 11111 0000000 000 01135789999997778887778
Q ss_pred HHHhhCCCCeEE
Q psy11379 264 ELGQRFPESYVH 275 (306)
Q Consensus 264 e~~~~f~~~~~h 275 (306)
++.+.|.-.=||
T Consensus 252 ~~~~~~gFDG~h 263 (559)
T PF13199_consen 252 KAIQNFGFDGWH 263 (559)
T ss_dssp HHHHHHT--EEE
T ss_pred HHHHccCCceEe
Confidence 888878766677
No 63
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=63.39 E-value=16 Score=32.77 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=42.6
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
++.+++.|+..+.++...+.+|.+.. ++. .-.+ .. ..-..+-++++.++|+++||++.-|--
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~-------~~~~-~~----~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-GYL-------TPPN-VI----WGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-CCC-------CCHH-HH----HHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 67888999999999999988875431 111 0000 00 112345689999999999999998853
No 64
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.53 E-value=30 Score=34.87 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-------DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~-------~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
+.-|.+-++-++.+++|.+++-- .++... ....|.. ...=|.+++++|++-|+++||+||-+
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~P------i~~~~~-----~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLP------FFQSPL-----RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECC------CcCCCC-----CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 57777778899999999998721 111110 0111211 12238899999999999999999986
Q ss_pred cCCchhhh
Q psy11379 214 IDTPGHTD 221 (306)
Q Consensus 214 id~PgH~~ 221 (306)
+ ++.|++
T Consensus 96 ~-V~NH~s 102 (539)
T TIGR02456 96 L-VLNHTS 102 (539)
T ss_pred e-ccCcCC
Confidence 5 456663
No 65
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=62.41 E-value=5.2 Score=36.75 Aligned_cols=119 Identities=8% Similarity=-0.043 Sum_probs=63.1
Q ss_pred cCCCC-CCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhccccccccccccc
Q psy11379 27 GSRHY-LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARKMTLCNST 105 (306)
Q Consensus 27 ~~R~~-~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~~~i~~~~ 105 (306)
++++. .+.++.|+.||.-|.+++-.+.+ |.||.-. .- .........+...++++|+.||+..++.+.-
T Consensus 23 ~~~~~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~-----~~--~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 23 VGFKHGATTETQKRYIDFAAEMGIEYVLV----DAGWYGW-----EK--DDDFDFTKPIPDFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp BSS-BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS---------TTT--TT-B-TT--HHHHHHHHHHTT-EEEE
T ss_pred CCCcCCCCHHHHHHHHHHHHHcCCCEEEe----ccccccc-----cc--cccccccccCCccCHHHHHHHHHHcCCCEEE
Confidence 33344 78999999999999999998877 7788631 00 0111112355668999999999888752211
Q ss_pred ccccee-e---eee---eeeeecCCCCCcccceecCCC-CCcC-HHHHHHHHhHHhhcCc
Q psy11379 106 LVPFLF-Q---IIR---VQTIEDFPQFPHRGLLVDGSR-HYLP-IKAIKKQLDIMSYNKL 156 (306)
Q Consensus 106 lVp~l~-~---~~~---~~~I~D~P~~~~Rg~~lD~~r-~~~~-~~~i~~~id~ma~~k~ 156 (306)
.+.... + .+. ...+.-.-++..+|+=+|--. .-.. ++...++++..|.+|+
T Consensus 92 w~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~L 151 (273)
T PF10566_consen 92 WYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKL 151 (273)
T ss_dssp EEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-
T ss_pred EEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCc
Confidence 111110 0 000 001111223445666666332 2222 7888888999999885
No 66
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.15 E-value=33 Score=30.94 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=42.8
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEecc
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEI 214 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPei 214 (306)
.++.+++.++.++.++.+.+-+|.+.... ..... ......+-+++++++|+..||++.-|-
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----------~~~~~----~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLG----------QSKEE----GLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCC----------CCHHH----HHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 36888999999999999988776643211 00000 012346779999999999999998875
No 67
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=61.73 E-value=23 Score=31.50 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=41.5
Q ss_pred HHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 143 AIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 143 ~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
...+.++.|+..++|.+.+.+.=. .+. +..|.. .+ ..-..+.++++++.|+++||.||..+-.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~---~~~-~~~~~~----~~---~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWE---AYQ-EPNPGY----NY---DETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEEST---STS-TTSTTT----SB---THHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHH---Hhc-CCCCCc----cc---cHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 677889999999999999887521 111 011110 00 0113467999999999999999987654
No 68
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=61.57 E-value=18 Score=34.63 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=38.3
Q ss_pred CHHHHHHHHhHHhhcCccee--EEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 140 PIKAIKKQLDIMSYNKLNVL--HWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l--~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
+.+..++.|+.|+.+++..+ -+|+..+. ..-..+++++|+++|+++|++|+..|+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~---------------------~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDD---------------------PEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCC---------------------HHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46899999999999998766 45653310 111467899999999999999999885
No 69
>PLN02784 alpha-amylase
Probab=61.48 E-value=35 Score=36.41 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=47.8
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-------DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~-------~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
...|.+-++.++.++++.+++--.- +.. . ...|.+ ..+=|.+|++++++.|+++||.||-+
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~------~s~-----s-~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlD 587 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT------ESV-----S-PEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGD 587 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC------CCC-----C-CCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4778888999999999999874311 100 0 012222 23348999999999999999999987
Q ss_pred cCCchhhhh
Q psy11379 214 IDTPGHTDS 222 (306)
Q Consensus 214 id~PgH~~~ 222 (306)
+ ++.|+..
T Consensus 588 i-ViNH~ag 595 (894)
T PLN02784 588 A-VLNHRCA 595 (894)
T ss_pred E-Ccccccc
Confidence 6 4566643
No 70
>PRK10658 putative alpha-glucosidase; Provisional
Probab=60.84 E-value=56 Score=33.96 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=63.6
Q ss_pred cCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC--
Q psy11379 139 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT-- 216 (306)
Q Consensus 139 ~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~-- 216 (306)
.+-+.+.++++.+...++..=-+|+.. .|.-+.. +... .|++ ..+. +.+++++..+++|++++.-|+-
T Consensus 280 ~~e~~v~~~~~~~r~~~iP~d~i~lD~--~w~~~~~-~~~f----~wd~-~~FP--dp~~mi~~L~~~G~k~~~~i~P~i 349 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLPLHVFHFDC--FWMKEFQ-WCDF----EWDP-RTFP--DPEGMLKRLKAKGLKICVWINPYI 349 (665)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEch--hhhcCCc-eeee----EECh-hhCC--CHHHHHHHHHHCCCEEEEeccCCc
Confidence 356788999999998888766666632 2211100 0000 0110 1111 3578888999999999987762
Q ss_pred -chhhhhhh--hcCCccccCCCCCcc-C---CccccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 217 -PGHTDSME--PGMPQIHCHCPHRVE-G---KTFVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 217 -PgH~~~~~--~~~p~l~~~~~~~~~-~---~~~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
+.+. .+. ...--+.......+. + ......+|.+||++.+...+.++++.+
T Consensus 350 ~~~s~-~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 350 AQKSP-LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD 406 (665)
T ss_pred CCCch-HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh
Confidence 1111 111 000011110000000 0 012457999999999999998888765
No 71
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=60.54 E-value=52 Score=30.93 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
.+.+-+.++++++.+...++..=.+.+..+ |.- .+... .|++ ..+. +.+++++..+++|+++++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~~---~~~~f----~~d~-~~fP--dp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--YMD---GYRVF----TWDK-ERFP--DPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--hhC---CCCce----eecc-ccCC--CHHHHHHHHHHCCCEEEEEEeC
Confidence 334578999999999998888766665322 211 11111 0111 1221 3688889999999999876542
Q ss_pred -----chhhhhhh--hcCCccccCCCCCc-cCC--c-cccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 217 -----PGHTDSME--PGMPQIHCHCPHRV-EGK--T-FVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 217 -----PgH~~~~~--~~~p~l~~~~~~~~-~~~--~-~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
++.. .+. ...--+.......+ .+. + ....+|.++|++.++..+.++++.+
T Consensus 87 ~v~~~~~~~-~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 87 GVKVDPGYD-VYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred ceeCCCCCh-HHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 1111 000 00000110000000 000 0 1346899999999999999888763
No 72
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.92 E-value=49 Score=30.86 Aligned_cols=107 Identities=9% Similarity=0.036 Sum_probs=59.9
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecC----C---ccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDD----Q---SFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRV 210 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dd----e---~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~v 210 (306)
+.+.+.++++++.+...++.+=.+++-.+ . .|.+..+.|| +.+++++..+++|++|
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FP-----------------dp~~mi~~L~~~G~kv 82 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFP-----------------DPKAMVRELHEMNAEL 82 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCC-----------------CHHHHHHHHHHCCCEE
Confidence 34678999999999998877666655321 0 1111111121 3688899999999999
Q ss_pred EeccCCchhh---hhhhhcC-CccccCCCC-Cc-----cCCccccCcCCCChhHHHHHHHHHHH
Q psy11379 211 IPEIDTPGHT---DSMEPGM-PQIHCHCPH-RV-----EGKTFVGPLDPTKNVTLDFVRDLFTE 264 (306)
Q Consensus 211 IPeid~PgH~---~~~~~~~-p~l~~~~~~-~~-----~~~~~~~~l~~~~~~t~~~~~~l~~e 264 (306)
|+-++ |+=. ..+..+. ..+...... .. .| ....+|.++|++.+...+.+++
T Consensus 83 ~~~i~-P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g--~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 83 MISIW-PTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGG--NTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred EEEec-CCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCC--CccccCCCCHHHHHHHHHHHHH
Confidence 98665 3211 1111000 011111100 00 01 1458999999999976655554
No 73
>PRK12677 xylose isomerase; Provisional
Probab=59.84 E-value=56 Score=31.51 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=41.2
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccc-cCCCCCCCCCCHHHHHHHHHHHHHcC--CeEEec
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL-KGAFGPDAIYTEKMIKSVIEYARLRG--IRVIPE 213 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~-~g~~~~~~~yt~~~v~~l~~~a~~~g--i~vIPe 213 (306)
.++.+++.|+..+.++.+.+.++.+-+.. . ++.-.+ ..+ .....+-+++|.+||+++| |++.-|
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~-~-----~~~~~d~~~a----~~~~~eaL~~l~~~A~~~G~gV~laIE 178 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGGREGA-E-----YDAAKDVRAA----LDRYREAIDLLAAYVKDQGYDLRFALE 178 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCCCCc-c-----CcccCCHHHH----HHHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence 46789999999999999999988663311 0 111000 001 1124566789999999855 877665
No 74
>PLN03244 alpha-amylase; Provisional
Probab=56.36 E-value=49 Score=35.05 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhh----h---hcCCccccC----CCCCccCCccccCcCCCChhHHHH
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSM----E---PGMPQIHCH----CPHRVEGKTFVGPLDPTKNVTLDF 257 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~----~---~~~p~l~~~----~~~~~~~~~~~~~l~~~~~~t~~~ 257 (306)
.+-|+++++.+|+.|.++||.||-++ +++|+..- + .+.+..... .....+| ...+|..++++..|
T Consensus 436 RYGTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WG---s~~fnyg~~EVr~F 511 (872)
T PLN03244 436 RYGTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWG---TRMFKYGDLDVLHF 511 (872)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCC---CceecCCCHHHHHH
Confidence 34489999999999999999999876 46777421 1 111111100 0011122 35789999999999
Q ss_pred HHHHHHHHHhhC
Q psy11379 258 VRDLFTELGQRF 269 (306)
Q Consensus 258 ~~~l~~e~~~~f 269 (306)
+-+.+.-.++-|
T Consensus 512 LLsna~yWleEy 523 (872)
T PLN03244 512 LISNLNWWITEY 523 (872)
T ss_pred HHHHHHHHHHHh
Confidence 998877776544
No 75
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=55.47 E-value=56 Score=34.80 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=48.9
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEee----cCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLV----DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~----dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
.++.+.+.++-+..++++.+++--- ....+.+....+-.+. ...=|.++++++++-|+++||.||-++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id-------p~lGt~edf~~Lv~aah~~Gm~vIlDi- 85 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN-------PELGGEEGLRRLSEAARARGLGLIVDI- 85 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC-------CCCCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 5688999999999999998876210 0111222222221111 122389999999999999999999876
Q ss_pred Cchhhh
Q psy11379 216 TPGHTD 221 (306)
Q Consensus 216 ~PgH~~ 221 (306)
+|.|++
T Consensus 86 VpNH~a 91 (825)
T TIGR02401 86 VPNHMA 91 (825)
T ss_pred cccccc
Confidence 366664
No 76
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=55.38 E-value=2.1e+02 Score=31.82 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCchhhhhh---hhcCCccccCCCCCccCC----ccccCcCCCChhHHHHHHHHHHHH
Q psy11379 193 EKMIKSVIEYARLRGIRVIPEIDTPGHTDSM---EPGMPQIHCHCPHRVEGK----TFVGPLDPTKNVTLDFVRDLFTEL 265 (306)
Q Consensus 193 ~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~---~~~~p~l~~~~~~~~~~~----~~~~~l~~~~~~t~~~~~~l~~e~ 265 (306)
.+|+|+||+-|.++||+||-++ ++.|+... ....|....... ..|. ...+.++..++.+.+++.+.+.-.
T Consensus 554 i~EfK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~--~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yW 630 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMD--ADGTPRTSFGGGRLGTTHEMSRRILVDSIKYL 630 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeC--CCCCcccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 4899999999999999999875 55777421 122222111000 0011 012356667777777777666666
Q ss_pred HhhC
Q psy11379 266 GQRF 269 (306)
Q Consensus 266 ~~~f 269 (306)
..-|
T Consensus 631 v~ey 634 (1111)
T TIGR02102 631 VDEF 634 (1111)
T ss_pred HHhc
Confidence 5433
No 77
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.69 E-value=79 Score=29.04 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=60.3
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecCCcccccccc--CCCccccCC--CCCCCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKK--FPSLSLKGA--FGPDAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~--~p~l~~~g~--~~~~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
+.+-+.++++++.+-..++.+=.+++-.| |...-.+ +.. ..+. |++ ..| -+.+++++..++.|+++|.-
T Consensus 21 y~s~~ev~~v~~~~r~~~iP~D~i~lD~d--w~~~~~~~~~~~--~~~~ft~d~-~~F--Pdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNIPLDVLVIDMD--WHVTDIPSKYGS--GWTGYSWNR-KLF--PDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEecc--cccccccccccC--CcceeEECh-hcC--CCHHHHHHHHHHCCCEEEEE
Confidence 45778999999999988888766666322 2110000 000 0000 111 111 14688889999999999976
Q ss_pred cCCchhh-hhhhhcCCccccCC-CCCccCCccccCcCCCChhHHHHH-HHHHHHH
Q psy11379 214 IDTPGHT-DSMEPGMPQIHCHC-PHRVEGKTFVGPLDPTKNVTLDFV-RDLFTEL 265 (306)
Q Consensus 214 id~PgH~-~~~~~~~p~l~~~~-~~~~~~~~~~~~l~~~~~~t~~~~-~~l~~e~ 265 (306)
++= +.. ..--..|.++.... .....+ ....+|.++|++.+.. +.+.+.+
T Consensus 94 v~P-~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~D~tnp~a~~~w~~~~~~~~ 145 (292)
T cd06595 94 LHP-ADGIRAHEDQYPEMAKALGVDPATE--GPILFDLTNPKFMDAYFDNVHRPL 145 (292)
T ss_pred eCC-CcccCCCcHHHHHHHHhcCCCcccC--CeEEecCCCHHHHHHHHHHHHHHH
Confidence 642 210 00001122211110 000111 1347899999999854 4444444
No 78
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=54.40 E-value=53 Score=35.22 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=49.0
Q ss_pred cCHHHHHHHHhHHhhcCcceeEEEee----cCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEecc
Q psy11379 139 LPIKAIKKQLDIMSYNKLNVLHWHLV----DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEI 214 (306)
Q Consensus 139 ~~~~~i~~~id~ma~~k~N~l~lHi~----dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPei 214 (306)
+.++.+.+.++.++.+++|.+++--- ....+.+....+-.+. ...=|.++++++++-|+++||.||-++
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id-------p~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN-------PELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC-------CCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35688999999999999999987321 0111222222221111 122288999999999999999998765
Q ss_pred CCchhhh
Q psy11379 215 DTPGHTD 221 (306)
Q Consensus 215 d~PgH~~ 221 (306)
+|.|++
T Consensus 90 -V~NH~~ 95 (879)
T PRK14511 90 -VPNHMA 95 (879)
T ss_pred -cccccc
Confidence 455553
No 79
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=53.70 E-value=15 Score=30.94 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
++.+++.++.++.++...+.+|.+. +.. .+...... ......+-+++++++|+++|+++..|--
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~----~~~~~~~~----~~~~~~~~l~~l~~~a~~~gv~i~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPS----GPEDDTEE----NWERLAENLRELAEIAEEYGVRIALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESS----STTSSHHH----HHHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---ccc----ccCCCHHH----HHHHHHHHHHHHHhhhhhhcceEEEecc
Confidence 6899999999999999999998753 000 11100000 0123556899999999999999999843
No 80
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=52.68 E-value=76 Score=29.28 Aligned_cols=74 Identities=9% Similarity=0.106 Sum_probs=43.2
Q ss_pred eecCCC-CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q psy11379 131 LVDGSR-HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIR 209 (306)
Q Consensus 131 ~lD~~r-~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~ 209 (306)
-+.... ..+.++.|++.++....+.-+.--+-|+. | ++. ..+..||.+|+++|.++|+++|+.
T Consensus 97 ~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~-----------t--~~~---~GG~~~s~~el~ai~~~a~~~gl~ 160 (290)
T PF01212_consen 97 PLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLEN-----------T--TEL---AGGTVYSLEELRAISELAREHGLP 160 (290)
T ss_dssp EEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEES-----------S--BTT---TTSB---HHHHHHHHHHHHHHT-E
T ss_pred ECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEe-----------c--CcC---CCCeeCCHHHHHHHHHHHHhCceE
Confidence 355555 67889999998888665222222222222 0 111 113689999999999999999999
Q ss_pred EEeccCCchhh
Q psy11379 210 VIPEIDTPGHT 220 (306)
Q Consensus 210 vIPeid~PgH~ 220 (306)
|.-.---..++
T Consensus 161 lhmDGARl~~a 171 (290)
T PF01212_consen 161 LHMDGARLANA 171 (290)
T ss_dssp EEEEETTHHHH
T ss_pred EEEehhhHHHh
Confidence 98765444443
No 81
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=52.31 E-value=2.1e+02 Score=26.96 Aligned_cols=118 Identities=16% Similarity=0.257 Sum_probs=66.9
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecC-----CccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEE
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDD-----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVI 211 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dd-----e~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vI 211 (306)
.+.+-+.++++++.+-..+++.=-+++..+ ..|.+....+|.. ..+++++..+++|++|+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp---------------~~~~mi~~L~~~G~k~~ 83 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGL---------------KMPEFVDELHANGQHYV 83 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCc---------------cHHHHHHHHHHCCCEEE
Confidence 344678999999999888888766665321 1222222233321 23888889999999999
Q ss_pred eccCCchhhh--------hhhhc-CCccccCCCC-Cc-cCC--c-cccCcCCCChhHHHHHHHHHHHHHhhCC
Q psy11379 212 PEIDTPGHTD--------SMEPG-MPQIHCHCPH-RV-EGK--T-FVGPLDPTKNVTLDFVRDLFTELGQRFP 270 (306)
Q Consensus 212 Peid~PgH~~--------~~~~~-~p~l~~~~~~-~~-~~~--~-~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 270 (306)
+-++ |+-.. .+..+ ..+....... .+ .+. + ....+|.+||++.+...+.++++.+-..
T Consensus 84 ~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 155 (339)
T cd06602 84 PILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP 155 (339)
T ss_pred EEEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 8775 22110 01100 0010000000 00 000 0 1346899999999999998888766444
No 82
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=50.98 E-value=42 Score=34.64 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhh
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTD 221 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~ 221 (306)
.+=|.+|++++++.|+++|+.||-++ +|+|++
T Consensus 125 ~~GT~eDf~~L~~~Ah~~G~~vi~Dl-VpnHTs 156 (688)
T TIGR02455 125 LLGSEEELIQLSRMAAAHNAITIDDI-IPAHTG 156 (688)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEe-CCCCCC
Confidence 34499999999999999999999554 678884
No 83
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=50.25 E-value=33 Score=31.01 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~ 231 (306)
..++++++++++++|...|++++-|+-+..-....+...+.+.
T Consensus 133 ~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~ii 175 (247)
T PRK13957 133 RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEII 175 (247)
T ss_pred hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEE
Confidence 5678899999999999999999999988777765555555543
No 84
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=49.96 E-value=2.2e+02 Score=26.50 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=64.8
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC-
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT- 216 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~- 216 (306)
+.+-+.+.++++.+...++..=.+++..+ |. ..+... .|++ ..+ -+.+++++..++.|+++++-++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f----~~d~-~~F--Pdp~~~i~~l~~~g~k~~~~~~P~ 87 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIH--YM---DSYRLF----TWDP-YRF--PEPKKLIDELHKRNVKLVTIVDPG 87 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChh--hh---CCCCce----eech-hcC--CCHHHHHHHHHHCCCEEEEEeecc
Confidence 44578999999999988888766666321 11 001000 1111 111 14678999999999999986641
Q ss_pred ---chhhhhhhhcC-CccccC-CCCCc-cCC--c-cccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 217 ---PGHTDSMEPGM-PQIHCH-CPHRV-EGK--T-FVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 217 ---PgH~~~~~~~~-p~l~~~-~~~~~-~~~--~-~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
..+...+..+. .+...+ ....+ .+. + ....+|.+||++.+...+.++++..
T Consensus 88 i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (317)
T cd06600 88 IRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLN 147 (317)
T ss_pred ccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 11111111110 011111 00000 010 0 1236899999999999999988863
No 85
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=49.62 E-value=41 Score=34.46 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCchhhh
Q psy11379 193 EKMIKSVIEYARLRGIRVIPEIDTPGHTD 221 (306)
Q Consensus 193 ~~~v~~l~~~a~~~gi~vIPeid~PgH~~ 221 (306)
.+|+|++|+.|.++||+||-++ ++.|+.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDv-V~NH~~ 255 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDV-VYNHTY 255 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-EcCCcc
Confidence 5899999999999999999876 446764
No 86
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=49.21 E-value=1.8e+02 Score=28.54 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=58.5
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccc---cCCC-ccc-----cCCCCCCCCCCHHHHHHHHHHH-HHcCCe
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESK---KFPS-LSL-----KGAFGPDAIYTEKMIKSVIEYA-RLRGIR 209 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~---~~p~-l~~-----~g~~~~~~~yt~~~v~~l~~~a-~~~gi~ 209 (306)
+++...+.++..+..++|.+|+- |++.. ..|. +.+ +.-+.+....+.+++++++.-+ +++|+-
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHft-------Plq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFT-------PLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEec-------ccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 45677888899999999999972 12110 1111 010 0011123456778999999998 588887
Q ss_pred EEeccCCchhh---hhhhhcCCccccCCCCCc
Q psy11379 210 VIPEIDTPGHT---DSMEPGMPQIHCHCPHRV 238 (306)
Q Consensus 210 vIPeid~PgH~---~~~~~~~p~l~~~~~~~~ 238 (306)
.+-++ +.-|+ ..|+..+||-...+...|
T Consensus 93 ~~~Dv-V~NHtA~nS~Wl~eHPEagYN~~nsP 123 (423)
T PF14701_consen 93 SMTDV-VLNHTANNSPWLREHPEAGYNLENSP 123 (423)
T ss_pred EEEEE-eeccCcCCChHHHhCcccccCCCCCc
Confidence 76655 33455 579999999877666544
No 87
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=48.40 E-value=1.8e+02 Score=25.23 Aligned_cols=103 Identities=17% Similarity=0.340 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhccccccccccccccccceeee
Q psy11379 34 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARKMTLCNSTLVPFLFQI 113 (306)
Q Consensus 34 ~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~~~i~~~~lVp~l~~~ 113 (306)
...+.+.|+.+...+...+|+=+.|.. | .|.+ .+..+.++++.... -+|
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~-f------vpn~----------~~g~~~i~~i~~~~---------~~~----- 59 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGH-F------VPNL----------TFGPDIIKAIRKIT---------DLP----- 59 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSS-S------SSSB-----------B-HHHHHHHHTTS---------SSE-----
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccc-c------CCcc----------cCCHHHHHHHhhcC---------CCc-----
Confidence 345788999999999999999998851 1 1333 34566777763321 011
Q ss_pred eeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCH
Q psy11379 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTE 193 (306)
Q Consensus 114 ~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~ 193 (306)
+..--+...|. . +++.++..+-+.+.+|++..
T Consensus 60 ~DvHLMv~~P~-----------------~----~i~~~~~~g~~~i~~H~E~~--------------------------- 91 (201)
T PF00834_consen 60 LDVHLMVENPE-----------------R----YIEEFAEAGADYITFHAEAT--------------------------- 91 (201)
T ss_dssp EEEEEESSSGG-----------------G----HHHHHHHHT-SEEEEEGGGT---------------------------
T ss_pred EEEEeeeccHH-----------------H----HHHHHHhcCCCEEEEcccch---------------------------
Confidence 11111233333 3 45666666778888887431
Q ss_pred HHHHHHHHHHHHcCCeEEeccC
Q psy11379 194 KMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 194 ~~v~~l~~~a~~~gi~vIPeid 215 (306)
+++.+++++.+++|+++-.-++
T Consensus 92 ~~~~~~i~~ik~~g~k~Gialn 113 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALN 113 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-
T ss_pred hCHHHHHHHHHHhCCCEEEEEE
Confidence 1367788889989888655443
No 88
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.40 E-value=3.4e+02 Score=28.34 Aligned_cols=144 Identities=16% Similarity=0.204 Sum_probs=86.1
Q ss_pred CHHHHHHHHhHHhhcCcceeEE-EeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC-Cc
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHW-HLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID-TP 217 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~l-Hi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid-~P 217 (306)
|-+.+++-|+.|-..++|..-+ .+ +|.+- .|+ .|.+. ++--|.. +++.|.+.|+.||---. +.
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~---eP~---eG~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~g 92 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYF----AWNLH---EPE---EGKFD----FTWLDEI-FLERAYKAGLYVILRTGPTG 92 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeE----Eeecc---Ccc---ccccC----cccchHH-HHHHHHhcCceEEEecCCCC
Confidence 3478888899999999998865 33 33322 122 23332 2322333 69999999999997763 45
Q ss_pred hhhhhhhhcCCccccCCCCCc-cCCccccCcCCCChhHHHHHHHHHHHHHhh-CCC----CeEEecCCccCc-cccc-cC
Q psy11379 218 GHTDSMEPGMPQIHCHCPHRV-EGKTFVGPLDPTKNVTLDFVRDLFTELGQR-FPE----SYVHLGGDEVDF-FCWE-QN 289 (306)
Q Consensus 218 gH~~~~~~~~p~l~~~~~~~~-~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~-f~~----~~~hiGgDEv~~-~~~~-~~ 289 (306)
++.....+.+|++........ ........+|++++-=.+.+..|++.+.+. ... --+|+- +|+.- .||- .|
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~d-neY~~~~~~~~~~ 171 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQND-NEYGGHPCYCDYC 171 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEcc-CccCCcccccccc
Confidence 555555678999876544411 111123468888885556777777777665 431 356665 36543 4662 22
Q ss_pred -HHHHHHHHhC
Q psy11379 290 -PEIKAFMSSG 299 (306)
Q Consensus 290 -p~~~~~~~~~ 299 (306)
+..+.|++++
T Consensus 172 ~~~f~~wLk~~ 182 (673)
T COG1874 172 QAAFRLWLKKG 182 (673)
T ss_pred HHHHHHHHHhC
Confidence 4445566653
No 89
>PRK10426 alpha-glucosidase; Provisional
Probab=48.16 E-value=1.7e+02 Score=30.32 Aligned_cols=134 Identities=15% Similarity=0.198 Sum_probs=68.9
Q ss_pred cCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccC--CCCCCCCCCHHHHHH
Q psy11379 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG--AFGPDAIYTEKMIKS 198 (306)
Q Consensus 121 D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g--~~~~~~~yt~~~v~~ 198 (306)
-.|+++.+|+.+.... +-+.+.++++.+-..++.+=-+++.|-++.+. .++..-. .. .|++ ..| -+.++
T Consensus 203 ~~P~Wal~G~~~g~~~---~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~--~~~g~~~-~~~~~~d~-~~F--Pdp~~ 273 (635)
T PRK10426 203 ELPDWAYDGVTLGIQG---GTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRM--TSFGKRL-MWNWKWDS-ERY--PQLDS 273 (635)
T ss_pred CCChhhccCccccccC---CHHHHHHHHHHHHHcCCCeeEEEEeccccccc--ccccccc-cccceECh-hhC--CCHHH
Confidence 3556666666643221 35789999999988887766666632111111 1110000 00 1111 111 14788
Q ss_pred HHHHHHHcCCeEEeccCC---chhhhhhhhc-CCccccCCCC-C----ccCCccccCcCCCChhHHHHHHHHHHH
Q psy11379 199 VIEYARLRGIRVIPEIDT---PGHTDSMEPG-MPQIHCHCPH-R----VEGKTFVGPLDPTKNVTLDFVRDLFTE 264 (306)
Q Consensus 199 l~~~a~~~gi~vIPeid~---PgH~~~~~~~-~p~l~~~~~~-~----~~~~~~~~~l~~~~~~t~~~~~~l~~e 264 (306)
+++.-++.|++++.-++- +++. .+..+ .........+ . ..+.-....+|.+||++.+...+.+++
T Consensus 274 mi~~L~~~G~k~v~~i~P~v~~~~~-~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 274 RIKQLNEEGIQFLGYINPYLASDGD-LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHHHHCCCEEEEEEcCccCCCCH-HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHH
Confidence 888999999999988762 1111 11100 0011111111 0 001112458999999999999887764
No 90
>TIGR03586 PseI pseudaminic acid synthase.
Probab=47.97 E-value=60 Score=30.62 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=49.4
Q ss_pred CHHHHHHHHhHHhhcCccee--EEEeecCCccccccccCCCccccCCCCC--------CCCCCHHHHHHHHHHHHHcCCe
Q psy11379 140 PIKAIKKQLDIMSYNKLNVL--HWHLVDDQSFPYESKKFPSLSLKGAFGP--------DAIYTEKMIKSVIEYARLRGIR 209 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l--~lHi~dde~~~~~~~~~p~l~~~g~~~~--------~~~yt~~~v~~l~~~a~~~gi~ 209 (306)
+++..+++|+..+..+-+.+ |.+-.+ .+.......+.....+.|.+ ...++.++.++|.+||+++||.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~ 92 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPD--TITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLT 92 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHH--HhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCc
Confidence 68999999999999887764 432211 11111110011111122211 1346788999999999999999
Q ss_pred EEeccCCchhhhh
Q psy11379 210 VIPEIDTPGHTDS 222 (306)
Q Consensus 210 vIPeid~PgH~~~ 222 (306)
++-+.=-..+...
T Consensus 93 ~~stpfd~~svd~ 105 (327)
T TIGR03586 93 IFSSPFDETAVDF 105 (327)
T ss_pred EEEccCCHHHHHH
Confidence 9998766666543
No 91
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=46.99 E-value=34 Score=32.32 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=39.2
Q ss_pred CHHHHHHHHhHHhhcCccee--EEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 140 PIKAIKKQLDIMSYNKLNVL--HWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l--~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
+.+.-+..|+.|+.+++..+ -+|+.+++ ...-.+-+++|+++|++.|+++|-.++
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~---------------------~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEED---------------------AELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCch---------------------HHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 46788889999999987765 23332211 011234589999999999999998775
No 92
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.66 E-value=48 Score=28.30 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhCC-CCeEE
Q psy11379 197 KSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP-ESYVH 275 (306)
Q Consensus 197 ~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~-~~~~h 275 (306)
.+++++++.+|+.++|++.+|...........+.. .+.|..+...+++ +.+...++ -+.+=
T Consensus 87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i--------------~~~p~~~~g~~~~----~~l~~~~~~~p~~a 148 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVATPTEIMQALELGADIV--------------KLFPAEAVGPAYI----KALKGPFPQVRFMP 148 (190)
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEE--------------EEcCCcccCHHHH----HHHHhhCCCCeEEE
Confidence 46888999999999999999988765443333322 1233333334444 44455565 57777
Q ss_pred ecC
Q psy11379 276 LGG 278 (306)
Q Consensus 276 iGg 278 (306)
+||
T Consensus 149 ~GG 151 (190)
T cd00452 149 TGG 151 (190)
T ss_pred eCC
Confidence 775
No 93
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=46.27 E-value=40 Score=30.32 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=38.6
Q ss_pred cCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 139 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 139 ~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
++...+..+++.|+.+- .. + .+++. ....+.++.+++.++.|+++||.+.|= .+.-
T Consensus 9 l~~~~~~d~Le~~g~yI-D~--l--------Kfg~G------------t~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~ 64 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDYI-TF--V--------KFGWG------------TSALIDRDIVKEKIEMYKDYGIKVYPG-GTLF 64 (237)
T ss_pred CCHHHHHHHHHHhhhhe-ee--E--------EecCc------------eEeeccHHHHHHHHHHHHHcCCeEeCC-ccHH
Confidence 47899999999998862 11 1 12221 113345577889999999999988876 5444
Q ss_pred hhh
Q psy11379 219 HTD 221 (306)
Q Consensus 219 H~~ 221 (306)
|..
T Consensus 65 E~~ 67 (237)
T TIGR03849 65 EIA 67 (237)
T ss_pred HHH
Confidence 443
No 94
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=46.09 E-value=52 Score=29.92 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~ 231 (306)
..++.+++++++++|.++|++++-|+...-+..-.++..+.+.
T Consensus 138 ~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI 180 (254)
T COG0134 138 AALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII 180 (254)
T ss_pred HhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE
Confidence 5678999999999999999999999988877766555555443
No 95
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=44.83 E-value=26 Score=33.61 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEe
Q psy11379 188 DAIYTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 188 ~~~yt~~~v~~l~~~a~~~gi~vIP 212 (306)
+..+|++|+.+|.+.|.++|+.||.
T Consensus 172 Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 172 GRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEe
Confidence 4789999999999999999999998
No 96
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=43.66 E-value=1.7e+02 Score=33.22 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=59.0
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCcc-ccCCCCCCC---CCCHHHHHHHHHHHHHc-CCeEEecc
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS-LKGAFGPDA---IYTEKMIKSVIEYARLR-GIRVIPEI 214 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~-~~g~~~~~~---~yt~~~v~~l~~~a~~~-gi~vIPei 214 (306)
+++...+-++.++..++|.+|+-- -++.+.-..|.-. +.=.++|.- .-+.++++++++-+.++ |+.+|-.+
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftP----I~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTP----LQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC----CccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 357788889999999999999821 1111111112111 000111111 14789999999999885 99988765
Q ss_pred CCchhh---hhhhhcCCccccCCCCC
Q psy11379 215 DTPGHT---DSMEPGMPQIHCHCPHR 237 (306)
Q Consensus 215 d~PgH~---~~~~~~~p~l~~~~~~~ 237 (306)
+..|+ ..|+..+||-...+...
T Consensus 206 -V~NHTa~ds~Wl~eHPEa~Yn~~~s 230 (1464)
T TIGR01531 206 -VFNHTANNSPWLLEHPEAAYNCITS 230 (1464)
T ss_pred -eecccccCCHHHHhChHhhcCCCCC
Confidence 56677 47899999976665443
No 97
>KOG0470|consensus
Probab=43.58 E-value=29 Score=36.08 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=63.8
Q ss_pred HHHHHHHhHHhhcCcceeEEEeecCC-----ccccccccCCCccccCCCCCCCCC-CHH------HHHHHHHHHHHcCCe
Q psy11379 142 KAIKKQLDIMSYNKLNVLHWHLVDDQ-----SFPYESKKFPSLSLKGAFGPDAIY-TEK------MIKSVIEYARLRGIR 209 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~lHi~dde-----~~~~~~~~~p~l~~~g~~~~~~~y-t~~------~v~~l~~~a~~~gi~ 209 (306)
.+..+.+..+-.+++|.+||--.-.. +|.+.... -+.|...| |++ |+|+||+.|...||+
T Consensus 255 ~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~n--------FFapssrYgt~~s~~ri~efK~lVd~aHs~GI~ 326 (757)
T KOG0470|consen 255 GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTN--------FFAPSSRYGTPESPCRINEFKELVDKAHSLGIE 326 (757)
T ss_pred hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeE--------eecccccccCCCcccchHHHHHHHHHHhhCCcE
Confidence 34555566677789999988543322 12111110 01122222 555 999999999999999
Q ss_pred EEeccCCchhhhhhhhcC-----CccccCCCC--CccCC---ccccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 210 VIPEIDTPGHTDSMEPGM-----PQIHCHCPH--RVEGK---TFVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 210 vIPeid~PgH~~~~~~~~-----p~l~~~~~~--~~~~~---~~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
|+-+| +-.|+.. -... ......||- .+.|. -..+.+|-..+.+..||-+=++-...
T Consensus 327 VlLDV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVt 392 (757)
T KOG0470|consen 327 VLLDV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVT 392 (757)
T ss_pred Eehhh-hhhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 99876 3455543 1111 111111221 01010 02457888899999987765554443
No 98
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=43.53 E-value=4.1e+02 Score=27.80 Aligned_cols=163 Identities=11% Similarity=0.102 Sum_probs=82.9
Q ss_pred cccceecCCCCCcC-----HHHHHHHHhHHhhcCcceeEEEeecC----CccccccccCCCccccCCCCCCCCCCHHHHH
Q psy11379 127 HRGLLVDGSRHYLP-----IKAIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIK 197 (306)
Q Consensus 127 ~Rg~~lD~~r~~~~-----~~~i~~~id~ma~~k~N~l~lHi~dd----e~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~ 197 (306)
.|-+++|.--.+-+ .+.+-.+|+.+...++|.+.+..=.| ..++ +.-+|--.-.+ ....|++ +.
T Consensus 314 ~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~--s~yfP~~~lp~---r~d~f~~--~a 386 (671)
T PRK14582 314 QRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVK--ELYFPNRLLPM---RADLFNR--VA 386 (671)
T ss_pred EEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcccc--ccccCcccccc---ccCCcCH--HH
Confidence 45566765444422 46778889999999999999877222 1111 11111100000 0123333 22
Q ss_pred HHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCC-Cc-cCCc-cccCcCCCChhHHHHHHHHHHHHHhhCCCCeE
Q psy11379 198 SVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPH-RV-EGKT-FVGPLDPTKNVTLDFVRDLFTELGQRFPESYV 274 (306)
Q Consensus 198 ~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~-~~-~~~~-~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~ 274 (306)
-. .+.++|++|--.+.+-+=. +....+........ .+ +-.+ ....|+|.+|++.++|.+++.|++...+-.=|
T Consensus 387 w~--l~~r~~v~v~AWmp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGi 462 (671)
T PRK14582 387 WQ--LRTRAGVNVYAWMPVLSFD--LDPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGI 462 (671)
T ss_pred HH--HHHhhCCEEEEeccceeec--cCCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 22 2789999998766553211 00111111000000 00 0000 12359999999999999999999986554444
Q ss_pred EecCCccCcccc-ccCHHHHHHHHhCCC
Q psy11379 275 HLGGDEVDFFCW-EQNPEIKAFMSSGDE 301 (306)
Q Consensus 275 hiGgDEv~~~~~-~~~p~~~~~~~~~~~ 301 (306)
|.= |+...+.+ ..+|+..+.-++.|.
T Consensus 463 lf~-Dd~~l~d~ed~s~~a~~~~~~~g~ 489 (671)
T PRK14582 463 LFH-DDAVLSDYEDASAPAITAYQQAGF 489 (671)
T ss_pred Eec-ccccccccccCCHHHHHHHHHcCC
Confidence 444 55444433 334433322233443
No 99
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=43.42 E-value=86 Score=27.54 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEE
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVI 211 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vI 211 (306)
.+.++++.+.++.+... .+|+-- -++++..+|..+...=.+......++++++++.+.++++|+.++
T Consensus 144 ~e~i~~ia~~l~~l~~~--~~~llp--yh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 144 RENMQQALDVLIPLGIK--QIHLLP--FHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred HHHHHHHHHHHHHcCCc--eEEEec--CCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 46777788777766444 444422 12333333333221101111244689999999999999999875
No 100
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=42.90 E-value=2.6e+02 Score=26.22 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=79.8
Q ss_pred HHHHHHHHhHHhhcCcceeEE--EeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHW--HLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~l--Hi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
-+++++++.+-...+ |.|-+ -+.+.+.-+-++++.|.. ..||.+++.+-++.+...||..|-.+-+|-
T Consensus 16 ~~~~R~lv~Et~L~~-~dLI~PiFV~eg~~~~~~I~SMPgv---------~r~s~d~l~~~~~~~~~lGi~av~LFgvp~ 85 (330)
T COG0113 16 SPALRRLVRETRLTP-NDLIYPIFVVEGENIKEEIPSMPGV---------YRYSLDRLVEEAEELVDLGIPAVILFGVPD 85 (330)
T ss_pred CHHHHHHHHhcCCCH-HHeeEeEEEecCCCCccccCCCCCc---------eeccHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 367777776643322 33322 222223334444555543 347888999999999999999888887775
Q ss_pred hh-------hh-------------hhhcCCcccc-----CCCCCccCCccccCcC----CCChhHHHHHHHHHHHHHhhC
Q psy11379 219 HT-------DS-------------MEPGMPQIHC-----HCPHRVEGKTFVGPLD----PTKNVTLDFVRDLFTELGQRF 269 (306)
Q Consensus 219 H~-------~~-------------~~~~~p~l~~-----~~~~~~~~~~~~~~l~----~~~~~t~~~~~~l~~e~~~~f 269 (306)
+. .+ +.+..|++.. .|+.+..|. ++.++ ..|++|++.+.++---.++
T Consensus 86 ~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGH--cGil~~~~~V~ND~Tle~l~k~Avs~Ae-- 161 (330)
T COG0113 86 DSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGH--CGILDDGGYVDNDETLEILAKQAVSQAE-- 161 (330)
T ss_pred ccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCc--cccccCCCeecchHHHHHHHHHHHHHHH--
Confidence 42 11 2246787753 344455554 55553 5688999977654222111
Q ss_pred CCCeEEecCCccCcccc--ccCHHHHHHHHhCCCCC
Q psy11379 270 PESYVHLGGDEVDFFCW--EQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 270 ~~~~~hiGgDEv~~~~~--~~~p~~~~~~~~~~~~~ 303 (306)
-|+|=+..+.. +.-.++++-+.+.|+.+
T Consensus 162 ------AGAdivAPSdMMDGrV~aIR~aLd~ag~~~ 191 (330)
T COG0113 162 ------AGADIVAPSDMMDGRVGAIREALDEAGFID 191 (330)
T ss_pred ------cCCCeecccccccchHHHHHHHHHHcCCCc
Confidence 34444433222 22255666666666543
No 101
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=40.41 E-value=1.1e+02 Score=28.63 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=42.4
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchh
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGH 219 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH 219 (306)
|.+...+.++.|-..++|++..++ .|.+..+. .|.++=. -..++..+++.|+++|+-||--+----|
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv----~W~~he~~------~g~~df~---g~~dl~~f~~~a~~~gl~vilrpGpyi~ 88 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYV----PWNLHEPE------EGQFDFT---GNRDLDRFLDLAQENGLYVILRPGPYIC 88 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE------HHHHSSB------TTB---S---GGG-HHHHHHHHHHTT-EEEEEEES---
T ss_pred ChhHHHHHHHHHHhCCcceEEEec----cccccCCC------CCccccc---chhhHHHHHHHHHHcCcEEEecccceec
Confidence 356778889999999999997765 22222111 2333211 1358999999999999999876444334
Q ss_pred hhhhhhcCCccc
Q psy11379 220 TDSMEPGMPQIH 231 (306)
Q Consensus 220 ~~~~~~~~p~l~ 231 (306)
++.-..+.|...
T Consensus 89 aE~~~gG~P~Wl 100 (319)
T PF01301_consen 89 AEWDNGGLPAWL 100 (319)
T ss_dssp TTBGGGG--GGG
T ss_pred ccccchhhhhhh
Confidence 432223444443
No 102
>PLN02877 alpha-amylase/limit dextrinase
Probab=39.95 E-value=1.8e+02 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCchhhh
Q psy11379 193 EKMIKSVIEYARLRGIRVIPEIDTPGHTD 221 (306)
Q Consensus 193 ~~~v~~l~~~a~~~gi~vIPeid~PgH~~ 221 (306)
..|+|++|+-+.++||+||-++ ++-|+.
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~ 492 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLH 492 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCcccc
Confidence 3689999999999999999875 556663
No 103
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=39.25 E-value=70 Score=28.96 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccc
Q psy11379 191 YTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231 (306)
Q Consensus 191 yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~ 231 (306)
++.+++++++++|+.+|++++-|+.+.-=...+.+..+++.
T Consensus 144 l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiI 184 (260)
T PRK00278 144 LDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLI 184 (260)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEE
Confidence 46678999999999999999999877654444444445544
No 104
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=38.77 E-value=1e+02 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=24.8
Q ss_pred cccccccCCCccccC-CCCCCCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 169 FPYESKKFPSLSLKG-AFGPDAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 169 ~~~~~~~~p~l~~~g-~~~~~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
||+.+.-.|..+... .|. ....-+++++++-++|+++||++--.
T Consensus 62 yRisS~liP~ashp~~~~~-~~~~~~~~l~~iG~~~~~~~iRls~H 106 (275)
T PF03851_consen 62 YRISSDLIPLASHPEVGWD-WEEEFAEELAEIGDLAKENGIRLSMH 106 (275)
T ss_dssp EE--TTSSTTTTSTT--S--HHHHHHHHHHHHHHHHHHTT-EEEE-
T ss_pred EecCcccCCCCCCcccccc-hHHHHHHHHHHHHHHHHHcCCeEEec
Confidence 577777677655431 111 11134678888888999999988543
No 105
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.62 E-value=3.3e+02 Score=25.29 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCcccccc-ccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCc--
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES-KKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTP-- 217 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~-~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~P-- 217 (306)
-+.++++++.+...++..=-+|+..+ |.-.. ..+... .|++ ..|. +.+++++..+++|+++++-++--
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~--~~~~~~~~~~~f----~~d~-~~FP--dp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSG--YTSIEGGKRYVF----NWNK-DRFP--DPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecc--ccccCCCceeee----ecCc-ccCC--CHHHHHHHHHHCCCEEEEEeCCccc
Confidence 46889999999888888766666421 21100 000000 0111 1111 47788999999999999866521
Q ss_pred hhhhhhhhcC-CccccCCCC--Cc-cCC--c-cccCcCCCChhHHHHHHHHHHHHH
Q psy11379 218 GHTDSMEPGM-PQIHCHCPH--RV-EGK--T-FVGPLDPTKNVTLDFVRDLFTELG 266 (306)
Q Consensus 218 gH~~~~~~~~-p~l~~~~~~--~~-~~~--~-~~~~l~~~~~~t~~~~~~l~~e~~ 266 (306)
..+..+..+. ..+.....+ .+ .+. + ....+|.++|++.+...+.+++..
T Consensus 99 ~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 99 QDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred CCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 0111111000 000000000 00 011 0 133699999999999988886553
No 106
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=35.87 E-value=1e+02 Score=27.88 Aligned_cols=57 Identities=21% Similarity=0.426 Sum_probs=33.9
Q ss_pred ceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q psy11379 130 LLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIR 209 (306)
Q Consensus 130 ~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~ 209 (306)
.++|.+ +++..++.+++.++.+- .. +. +++.+ ...|..+.+++.++.|+++||.
T Consensus 16 ~v~Dkg---lg~~~~~dlLe~ag~yI-D~--~K--------~g~Gt------------~~l~~~~~l~eki~l~~~~gV~ 69 (244)
T PF02679_consen 16 MVIDKG---LGLRYLEDLLESAGDYI-DF--LK--------FGWGT------------SALYPEEILKEKIDLAHSHGVY 69 (244)
T ss_dssp EEEESS-----HHHHHHHHHHHGGG--SE--EE--------E-TTG------------GGGSTCHHHHHHHHHHHCTT-E
T ss_pred EEecCC---CCHHHHHHHHHHhhhhc-cE--EE--------ecCce------------eeecCHHHHHHHHHHHHHcCCe
Confidence 467877 68899999999988862 11 21 22211 1344556677777777777777
Q ss_pred EEe
Q psy11379 210 VIP 212 (306)
Q Consensus 210 vIP 212 (306)
+.|
T Consensus 70 v~~ 72 (244)
T PF02679_consen 70 VYP 72 (244)
T ss_dssp EEE
T ss_pred EeC
Confidence 765
No 107
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=34.94 E-value=3.7e+02 Score=25.69 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEE
Q psy11379 30 HYLPIKAIKKQLDIMSYNKLNVLHW 54 (306)
Q Consensus 30 ~~~~~~~l~~~id~ma~~k~N~lh~ 54 (306)
..++.+.++++++.++..+...+.+
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~ 112 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRL 112 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4689999999999999888776544
No 108
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=34.56 E-value=88 Score=29.16 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=51.3
Q ss_pred CccceeeecCCCC--CCHHHHHHHHHHHHhcCCcEEEEeeccCCCcc-eeecccCCcccc-CCCCCcchhhHHHHHhhcc
Q psy11379 19 PHRGLLVDGSRHY--LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP-YESKKFPSLSLK-GAFGPDAIYTEKMIKKVGL 94 (306)
Q Consensus 19 ~~rg~~lD~~R~~--~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~-~~~~~~p~l~~~-ga~~~~~~YT~~ei~~l~~ 94 (306)
+.||+=|++..+. ...+.+.++|+.|...++|++-++..- .|.. +.|+-.|..... |... .--+..-++.+..
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~~~--~~pg~DpL~~~I~ 77 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGKQG--KDPGFDPLEFMIE 77 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCCCC--CCCCccHHHHHHH
Confidence 4699999997755 468999999999999999999999874 3444 345545522111 1111 1112344666666
Q ss_pred ccccccc
Q psy11379 95 GARKMTL 101 (306)
Q Consensus 95 ~ar~~~i 101 (306)
-|+.+|+
T Consensus 78 eaHkrGl 84 (311)
T PF02638_consen 78 EAHKRGL 84 (311)
T ss_pred HHHHcCC
Confidence 6666665
No 109
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=34.30 E-value=52 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEec
Q psy11379 192 TEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 192 t~~~v~~l~~~a~~~gi~vIPe 213 (306)
|.+|+++++++|+++++.+.+-
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~ 30 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR 30 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEE
Confidence 7899999999999999999986
No 110
>PRK09505 malS alpha-amylase; Reviewed
Probab=34.09 E-value=1.8e+02 Score=30.33 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCC--ccc-c-ccccCCCccccCCCC------CCCCCCHHHHHHHHHHHHHcCCeE
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQ--SFP-Y-ESKKFPSLSLKGAFG------PDAIYTEKMIKSVIEYARLRGIRV 210 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde--~~~-~-~~~~~p~l~~~g~~~------~~~~yt~~~v~~l~~~a~~~gi~v 210 (306)
+.-|.+-|+-+..+++|.+++----.. ++. - ....+|.-+..|-+. ....=|.+++++|++.|+++||.|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 566777788899999999976210000 000 0 000111111111110 023348999999999999999999
Q ss_pred EeccCCchhhh
Q psy11379 211 IPEIDTPGHTD 221 (306)
Q Consensus 211 IPeid~PgH~~ 221 (306)
|-++ ++.|++
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9876 345554
No 111
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=33.99 E-value=1.7e+02 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=39.2
Q ss_pred EEEeecCCccccccccCCCccccCCCCCCCCCCHHH--HHH-HHHHHHHcCCeEEe
Q psy11379 160 HWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKM--IKS-VIEYARLRGIRVIP 212 (306)
Q Consensus 160 ~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~--v~~-l~~~a~~~gi~vIP 212 (306)
.+|++-||-|.-.....+..++...++|+.+||... -.- +-+|.+.+|+.++-
T Consensus 121 f~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TYglp~~I 176 (340)
T COG1088 121 FHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLPATI 176 (340)
T ss_pred EEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHcCCceEE
Confidence 578999999987777777788888899999996532 222 33577888886653
No 112
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.60 E-value=16 Score=32.57 Aligned_cols=130 Identities=11% Similarity=0.004 Sum_probs=66.6
Q ss_pred ccceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCC-ccccCCCCCcchhhHHHHHhhcccccc
Q psy11379 20 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPS-LSLKGAFGPDAIYTEKMIKKVGLGARK 98 (306)
Q Consensus 20 ~rg~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~-l~~~ga~~~~~~YT~~ei~~l~~~ar~ 98 (306)
.||..++..+..-..+.+++.|+.++..+...+..+.- .. |. ....-+ .....+.+++++..|..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g----~~------~~~~~~~~~----~~~~~~~l~~l~~~A~~ 134 (254)
T TIGR03234 69 ERGIACLPGREEEFREGVALAIAYARALGCPQVNCLAG----KR------PAGVSPEEA----RATLVENLRYAADALDR 134 (254)
T ss_pred CCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcC----CC------CCCCCHHHH----HHHHHHHHHHHHHHHHh
Confidence 45666655544333688999999999999998866431 10 10 000000 12234677888877876
Q ss_pred cccc--ccccccc-e-eeeee----eeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecC
Q psy11379 99 MTLC--NSTLVPF-L-FQIIR----VQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDD 166 (306)
Q Consensus 99 ~~i~--~~~lVp~-l-~~~~~----~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dd 166 (306)
.|+. +...-+. . ...+. ...+.+.=.-+.=|+++|++.-+..-+.+.+.++.+ +-...|+|+.|+
T Consensus 135 ~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~~~~~~i~~D~~h~~~~~e~~~~~i~~~---~~~i~~vHi~D~ 207 (254)
T TIGR03234 135 IGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVGRENLKLQYDLYHMQRMGGDLARTLAAY---AAHIGHVQIADN 207 (254)
T ss_pred cCCEEEEEECCcccCCCChhcCHHHHHHHHHHhCCCCEeEeeehhhhhhhCCCHHHHHHHh---hccEeEEEeCCC
Confidence 6652 1111100 0 00010 011111111223478899887554433444444443 435668999885
No 113
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=33.59 E-value=4.1e+02 Score=24.99 Aligned_cols=144 Identities=14% Similarity=0.196 Sum_probs=82.2
Q ss_pred HHHHHHHHhHHhhcCcceeE-EEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchh
Q psy11379 141 IKAIKKQLDIMSYNKLNVLH-WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGH 219 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~-lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH 219 (306)
-+.+++++.+-...+-+..+ +-+.+.+.-+-.+++.|.. ..|+.+.+.+.++.+.+.||.-|-.+-.|.|
T Consensus 16 ~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~---------~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~ 86 (322)
T PRK13384 16 SEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGI---------SRLPESALADEIERLYALGIRYVMPFGISHH 86 (322)
T ss_pred CHHHHHHHhcCCCCHHHceeeEEEecCCCCceecCCCCCc---------ceECHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 36677776554333323222 2233333334445555543 3478899999999999999987766655655
Q ss_pred h-----h-------------hhhhcCCcccc-----CCCCCccCCccccCcC---CCChhHHHHHHHHHHHHHhhCCCCe
Q psy11379 220 T-----D-------------SMEPGMPQIHC-----HCPHRVEGKTFVGPLD---PTKNVTLDFVRDLFTELGQRFPESY 273 (306)
Q Consensus 220 ~-----~-------------~~~~~~p~l~~-----~~~~~~~~~~~~~~l~---~~~~~t~~~~~~l~~e~~~~f~~~~ 273 (306)
- . .+.+..|++.. -|+.+..|. ++.++ +.|++|++.+.++---.++
T Consensus 87 Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGH--cGil~~g~i~ND~Tl~~L~~~Als~A~------ 158 (322)
T PRK13384 87 KDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGH--CGVLHNDEVDNDATVENLVKQSVTAAK------ 158 (322)
T ss_pred CCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCc--eeeccCCcCccHHHHHHHHHHHHHHHH------
Confidence 2 1 12346788753 355454454 44444 4588999877665322222
Q ss_pred EEecCCccCcccc--ccCHHHHHHHHhCCCCC
Q psy11379 274 VHLGGDEVDFFCW--EQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 274 ~hiGgDEv~~~~~--~~~p~~~~~~~~~~~~~ 303 (306)
-|+|=|..+.- +.--++++-+.++|+.+
T Consensus 159 --AGADiVAPSdMMDGrV~aIR~aLd~~g~~~ 188 (322)
T PRK13384 159 --AGADMLAPSAMMDGQVKAIRQGLDAAGFEH 188 (322)
T ss_pred --cCCCeEecccccccHHHHHHHHHHHCCCCC
Confidence 46666644322 22257777777777643
No 114
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=33.42 E-value=96 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEe
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIP 212 (306)
..+|.+|+.+..++|.+.|++.+.
T Consensus 310 R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 310 RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred ccCCHHHHHHHHHHHHHcCCceee
Confidence 568999999999999999998654
No 115
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=33.38 E-value=1.4e+02 Score=34.66 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=47.9
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeec----CCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~d----de~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
+++.+.+.++-++.+++|.+++---- ...+.+....+-.+. ...=|.+++++|++.|+++||.||-++
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-------p~lG~~edf~~Lv~~ah~~Gi~vilDi- 827 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-------PEIGGEEGFERFCAALKAHGLGQLLDI- 827 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-------cccCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 57888899999999999988762100 011111111111111 122379999999999999999999765
Q ss_pred Cchhhh
Q psy11379 216 TPGHTD 221 (306)
Q Consensus 216 ~PgH~~ 221 (306)
+|.|++
T Consensus 828 V~NH~~ 833 (1693)
T PRK14507 828 VPNHMG 833 (1693)
T ss_pred cccccC
Confidence 556764
No 116
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=1.5e+02 Score=27.83 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccc----cCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCch
Q psy11379 143 AIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL----KGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPG 218 (306)
Q Consensus 143 ~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~----~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~Pg 218 (306)
.+-+.++..+..++|.|-+.+-||-+ .-+||.--+ .++.+ .-.+++-+++-|++.||-+|.-|=++-
T Consensus 78 ~~de~fk~ikdn~~Na~ViD~Kdd~G----~lty~s~d~~~~~~~sv~-----~f~Di~~~iKkaKe~giY~IARiVvFK 148 (400)
T COG1306 78 RLDELFKLIKDNNINAFVIDVKDDYG----ELTYPSSDEINKYTKSVN-----KFKDIEPVIKKAKENGIYAIARIVVFK 148 (400)
T ss_pred HHHHHHHHHHhCCCCEEEEEecCCCc----cEeccccchhhhhhhccc-----cccccHHHHHHHHhcCeEEEEEEEEee
Confidence 34455667788999999999888643 223332111 12222 234789999999999999998775544
Q ss_pred hhhhhhhcCCccccCCCCCcc-----CC-----ccccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 219 HTDSMEPGMPQIHCHCPHRVE-----GK-----TFVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 219 H~~~~~~~~p~l~~~~~~~~~-----~~-----~~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
.+-......-++..-....++ |. ....-+|+-++.++++=-.+-+|..+
T Consensus 149 D~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~ 207 (400)
T COG1306 149 DTILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAK 207 (400)
T ss_pred eeeEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHH
Confidence 432111000011100000010 00 01346788999999999999999876
No 117
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=32.74 E-value=1.1e+02 Score=29.04 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=22.0
Q ss_pred CCCcCHHHHHHHHhHHhhcCcceeEEEeecCC
Q psy11379 136 RHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQ 167 (306)
Q Consensus 136 r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde 167 (306)
+..++.+.++++|+.+...+. ..+.+++.|
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~GGE 72 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSGGE 72 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEECCc
Confidence 345678999999999887664 456666655
No 118
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=1.1e+02 Score=29.05 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhh
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDS 222 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~ 222 (306)
..+|.+++++.+++|.++|.++.--+++.-|...
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~ 77 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDE 77 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEeccccccch
Confidence 3479999999999999999999999998888753
No 119
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=31.66 E-value=31 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCc
Q psy11379 28 SRHYLPIKAIKKQLDIMSY-NKLN 50 (306)
Q Consensus 28 ~R~~~~~~~l~~~id~ma~-~k~N 50 (306)
.|||+|-..+|++++.|.. ++++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4999999999999999997 6654
No 120
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=31.19 E-value=51 Score=29.22 Aligned_cols=74 Identities=8% Similarity=-0.026 Sum_probs=45.1
Q ss_pred ccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy11379 128 RGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRG 207 (306)
Q Consensus 128 Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~g 207 (306)
|+..++..+..-..+.+++.|+.+..++...+.++.+-.. ...+. .-. .....+.+++++++|++.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~------~~~~~---~~~----~~~~~~~l~~l~~~A~~~g 136 (254)
T TIGR03234 70 RGIACLPGREEEFREGVALAIAYARALGCPQVNCLAGKRP------AGVSP---EEA----RATLVENLRYAADALDRIG 136 (254)
T ss_pred CccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcCCCC------CCCCH---HHH----HHHHHHHHHHHHHHHHhcC
Confidence 4444444332222577888999999998887766543210 00000 000 1123467999999999999
Q ss_pred CeEEecc
Q psy11379 208 IRVIPEI 214 (306)
Q Consensus 208 i~vIPei 214 (306)
|.+.-|.
T Consensus 137 i~l~lE~ 143 (254)
T TIGR03234 137 LTLLIEP 143 (254)
T ss_pred CEEEEEE
Confidence 9999884
No 121
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.08 E-value=1.2e+02 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=22.0
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCc
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQS 168 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~ 168 (306)
..++.+.++++++++...+. ..+++++.|.
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~--~~v~~~GGEP 64 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGV--LQLHFSGGEP 64 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCC--cEEEEeCccc
Confidence 45678999999999987654 4566677653
No 122
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.93 E-value=4.6e+02 Score=24.67 Aligned_cols=127 Identities=12% Similarity=0.068 Sum_probs=65.8
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccc-----cc--cCCCccccC--CCCCCCCCCH----HHHHHHHHHH
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE-----SK--KFPSLSLKG--AFGPDAIYTE----KMIKSVIEYA 203 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~-----~~--~~p~l~~~g--~~~~~~~yt~----~~v~~l~~~a 203 (306)
.+.+.+.++++++.+...++.+=-++|.+ |.-. +. .|-...... .+++ ..+.. -+.+++++..
T Consensus 19 ~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~---W~~~~~~~~w~d~~y~~~~~~~~~~~~~-~~f~~~~~FPdp~~mi~~L 94 (340)
T cd06597 19 EWDTQAEVMRQMDAHEEHGIPVTVVVIEQ---WSDEATFYVFNDAQYTPKDGGAPLSYDD-FSFPVEGRWPNPKGMIDEL 94 (340)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeEEEEec---ccCcceeeeeccchhcccccCCcceecc-cccCccccCCCHHHHHHHH
Confidence 34567999999999999998877666642 2211 00 000000000 0100 00110 1588999999
Q ss_pred HHcCCeEE----eccCCchhh--h---hhhhc-CCccccCCCC-Cc-c-CC--c-cccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 204 RLRGIRVI----PEIDTPGHT--D---SMEPG-MPQIHCHCPH-RV-E-GK--T-FVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 204 ~~~gi~vI----Peid~PgH~--~---~~~~~-~p~l~~~~~~-~~-~-~~--~-~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
++.|++++ |-|+.=-|. . ....+ -.++...... .+ . +. + ....+|.+||++.+...+.++++.+
T Consensus 95 h~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 95 HEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVD 174 (340)
T ss_pred HHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHH
Confidence 99999995 766531011 0 00000 0011111000 00 0 00 0 1357999999999998888888753
No 123
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=30.86 E-value=55 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCcc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQI 230 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l 230 (306)
+-+...=++.++++|+++|..|+|.= .=+..|++.+|+.
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey 75 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEY 75 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGG
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCccc
Confidence 44677889999999999999999971 1123455667764
No 124
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=30.54 E-value=1.9e+02 Score=28.13 Aligned_cols=68 Identities=26% Similarity=0.345 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEec
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-------DAIYTEKMIKSVIEYARLRGIRVIPE 213 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~-------~~~yt~~~v~~l~~~a~~~gi~vIPe 213 (306)
+.-|.+-+|-+..++++.+++- +-++.......|.. ...=|.++++++++-|.++||.||..
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~-----------Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLS-----------PIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeC-----------CCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4555677888888999988871 11111111111111 13448999999999999999999998
Q ss_pred cCCchhh
Q psy11379 214 IDTPGHT 220 (306)
Q Consensus 214 id~PgH~ 220 (306)
+- .-|+
T Consensus 97 ~V-~NH~ 102 (505)
T COG0366 97 LV-FNHT 102 (505)
T ss_pred ec-cCcC
Confidence 63 4455
No 125
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=30.36 E-value=24 Score=27.42 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.2
Q ss_pred eEEecCCCCccceeeecCCCC
Q psy11379 11 TIEDFPQFPHRGLLVDGSRHY 31 (306)
Q Consensus 11 ~i~d~p~~~~rg~~lD~~R~~ 31 (306)
.+.----|+||||.+|+---|
T Consensus 19 QvVRHrlfpfrGVV~DvDPey 39 (116)
T COG3785 19 QVVRHRLFPFRGVVFDVDPEY 39 (116)
T ss_pred hhhhhhhcccceEEEecCccc
Confidence 334445699999999998877
No 126
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=30.29 E-value=1.8e+02 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=49.0
Q ss_pred cCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 139 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 139 ~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
+.++.+.++||+....++..+.+-++.|. .| ++.-|-+-+|++-+.|++++|.+|-..--
T Consensus 169 ~D~~kLe~lidevG~~nvp~I~~tiT~Ns--------------ag----GQpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 169 FDLEKLERLIDEVGADNVPYIVLTITNNS--------------AG----GQPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred cCHHHHHHHHHHhCcccCcEEEEEEeccc--------------cC----CCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 36899999999999998888888777752 11 36678889999999999999999987443
No 127
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=29.26 E-value=4.7e+02 Score=24.58 Aligned_cols=141 Identities=12% Similarity=0.167 Sum_probs=78.6
Q ss_pred HHHHHHHhHHhhcCcceeE-EEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchh-
Q psy11379 142 KAIKKQLDIMSYNKLNVLH-WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGH- 219 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~-lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH- 219 (306)
+.+++++.+-...+-+.++ +-+.+.+.-+-++++.|.. ..|+.+.+.+.++-+.+.||.=|-.+-.|.+
T Consensus 7 ~~~R~lv~Et~L~~~dlI~PlFV~eg~~~~~~I~smPG~---------~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~ 77 (320)
T cd04824 7 PLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGI---------NRYGVNRLEEFLRPLVAKGLRSVILFGVPLKP 77 (320)
T ss_pred HHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCc---------eeeCHHHHHHHHHHHHHCCCCEEEEeCCCccc
Confidence 4555555543222222222 3334444344455555553 3478889999999999999986665555533
Q ss_pred -------hhhh-------------hhcCCcccc-----CCCCCccCCccccCcC----CCChhHHHHHHHHHHHHHhhCC
Q psy11379 220 -------TDSM-------------EPGMPQIHC-----HCPHRVEGKTFVGPLD----PTKNVTLDFVRDLFTELGQRFP 270 (306)
Q Consensus 220 -------~~~~-------------~~~~p~l~~-----~~~~~~~~~~~~~~l~----~~~~~t~~~~~~l~~e~~~~f~ 270 (306)
+++| .+..|++.. -|..+..|. ++.++ ..|++|++.+.++---.++
T Consensus 78 ~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGH--cGil~~~g~vdND~Tl~~L~k~Avs~A~--- 152 (320)
T cd04824 78 GKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGH--CGILYEDGTINNEASVKRLAEVALAYAK--- 152 (320)
T ss_pred cCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCc--ceeECCCCcCcCHHHHHHHHHHHHHHHH---
Confidence 1112 346788753 355555554 55553 5589999877665322222
Q ss_pred CCeEEecCCccCcccc--ccCHHHHHHHHhCCC
Q psy11379 271 ESYVHLGGDEVDFFCW--EQNPEIKAFMSSGDE 301 (306)
Q Consensus 271 ~~~~hiGgDEv~~~~~--~~~p~~~~~~~~~~~ 301 (306)
-|+|=|..+.. +.--++++-+.+.|+
T Consensus 153 -----AGADiVAPSdMMDGrV~aIR~aLD~~G~ 180 (320)
T cd04824 153 -----AGAHIVAPSDMMDGRVRAIKQALIQAGL 180 (320)
T ss_pred -----hCCCEEecccccccHHHHHHHHHHHCCC
Confidence 46666544322 122566777777776
No 128
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=29.11 E-value=3.5e+02 Score=22.70 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=45.7
Q ss_pred cCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccC
Q psy11379 139 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEID 215 (306)
Q Consensus 139 ~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid 215 (306)
++.+...+.+..|...+++.+-+--+....+.. +|.--..+.+ ..=..+-|..+++.|.+.|++|+.-+.
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps~~~~~~~---~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPSKLSPGGF---YMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCccccCccc---cCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 456888999999999999998654455443332 2211000111 011445689999999999999988654
No 129
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=28.36 E-value=3.4e+02 Score=25.50 Aligned_cols=113 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhh
Q psy11379 142 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTD 221 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~ 221 (306)
+.-++=|..|..++.|++.++--| ...+=.+.++...+-||=||-.+++| ..
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY~vd--------------------------p~~nHd~CM~~~~~aGIYvi~Dl~~p--~~ 104 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVYSVD--------------------------PSKNHDECMSAFADAGIYVILDLNTP--NG 104 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-----------------------------TTS--HHHHHHHHHTT-EEEEES-BT--TB
T ss_pred HHHHHhHHHHHHcCCCEEEEEEeC--------------------------CCCCHHHHHHHHHhCCCEEEEecCCC--Cc
Q ss_pred hhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhCCCCeEEecCCccCccccccC---------HHH
Q psy11379 222 SMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQN---------PEI 292 (306)
Q Consensus 222 ~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv~~~~~~~~---------p~~ 292 (306)
++-+..|. .||. ..-++-..++++.++.-=..--|.+| -||....=+.. -.+
T Consensus 105 sI~r~~P~---~sw~---------------~~l~~~~~~vid~fa~Y~N~LgFf~G-NEVin~~~~t~aap~vKAavRD~ 165 (314)
T PF03198_consen 105 SINRSDPA---PSWN---------------TDLLDRYFAVIDAFAKYDNTLGFFAG-NEVINDASNTNAAPYVKAAVRDM 165 (314)
T ss_dssp S--TTS------------------------HHHHHHHHHHHHHHTT-TTEEEEEEE-ESSS-STT-GGGHHHHHHHHHHH
T ss_pred cccCCCCc---CCCC---------------HHHHHHHHHHHHHhccCCceEEEEec-ceeecCCCCcccHHHHHHHHHHH
Q ss_pred HHHHHhCCC
Q psy11379 293 KAFMSSGDE 301 (306)
Q Consensus 293 ~~~~~~~~~ 301 (306)
++|++++++
T Consensus 166 K~Yi~~~~~ 174 (314)
T PF03198_consen 166 KAYIKSKGY 174 (314)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHhcCC
No 130
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=28.35 E-value=1.8e+02 Score=30.42 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~ 231 (306)
..++.+++++++++|.+.|++++-|+-+.-.....++..+.+.
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~ii 184 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVI 184 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEE
Confidence 4578899999999999999999999988777766665555554
No 131
>PRK01060 endonuclease IV; Provisional
Probab=28.03 E-value=1.3e+02 Score=27.00 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=62.2
Q ss_pred ceeeecCCCCCCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhHHHHHhhccccccccc
Q psy11379 22 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKKVGLGARKMTL 101 (306)
Q Consensus 22 g~~lD~~R~~~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~~ei~~l~~~ar~~~i 101 (306)
|.+..+.+. +++.|+.++..++..+.+-+.....|. ...++.++++++.......++
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 555555554 889999999999999999775433221 123466666666555555555
Q ss_pred cccccccceeeeeeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeec
Q psy11379 102 CNSTLVPFLFQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVD 165 (306)
Q Consensus 102 ~~~~lVp~l~~~~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~d 165 (306)
.+..+.+...+.+ .+ -.|.-+.| -.+++.+++.++..+.++...+-+|.+.
T Consensus 62 ~~~~~~~h~~~~~---nl-~~~d~~~r---------~~s~~~~~~~i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 62 SPEDILVHAPYLI---NL-GNPNKEIL---------EKSRDFLIQEIERCAALGAKLLVFHPGS 112 (281)
T ss_pred CCCceEEecceEe---cC-CCCCHHHH---------HHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 3221221111100 00 01110111 1135788899999999998888888654
No 132
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=27.80 E-value=2.1e+02 Score=28.06 Aligned_cols=25 Identities=8% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEe
Q psy11379 188 DAIYTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 188 ~~~yt~~~v~~l~~~a~~~gi~vIP 212 (306)
+..|+++++++|++.|+++++-||-
T Consensus 214 G~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 214 GATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEE
Confidence 3678999999999999999998875
No 133
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.63 E-value=63 Score=31.13 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEe
Q psy11379 188 DAIYTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 188 ~~~yt~~~v~~l~~~a~~~gi~vIP 212 (306)
+..||++++++|++.|+++|+-||-
T Consensus 177 Gav~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 177 GAVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 3678999999999999999999887
No 134
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.53 E-value=4.4e+02 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeeccC
Q psy11379 34 IKAIKKQLDIMSYNKLNVLHWHLVDD 59 (306)
Q Consensus 34 ~~~l~~~id~ma~~k~N~lh~hl~d~ 59 (306)
...|.+.|+.+.. +...+|+=+.|.
T Consensus 14 ~~~l~~el~~l~~-g~d~lH~DiMDG 38 (229)
T PRK09722 14 LLKFKEQIEFLNS-KADYFHIDIMDG 38 (229)
T ss_pred HHHHHHHHHHHHh-CCCEEEEecccC
Confidence 3567788888877 788999988774
No 135
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=27.52 E-value=1.1e+02 Score=30.29 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~ 231 (306)
..+++++++++.++|.+.|++++-|+-..--....+...+.+.
T Consensus 141 ~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~ii 183 (454)
T PRK09427 141 SVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVI 183 (454)
T ss_pred HhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEE
Confidence 5678899999999999999999999988777765555555543
No 136
>PRK01060 endonuclease IV; Provisional
Probab=27.28 E-value=2.3e+02 Score=25.32 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=41.9
Q ss_pred cceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q psy11379 129 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGI 208 (306)
Q Consensus 129 g~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi 208 (306)
|++..+.. .+.+.++.++..++..+.+-++....|. ...++.++++++-+.+.++|+
T Consensus 5 g~~~~~~~------~~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAG------GLEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCC------CHHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 44555544 2778899999999999988654322111 134688899999999999999
Q ss_pred e
Q psy11379 209 R 209 (306)
Q Consensus 209 ~ 209 (306)
+
T Consensus 62 ~ 62 (281)
T PRK01060 62 S 62 (281)
T ss_pred C
Confidence 8
No 137
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=27.20 E-value=5.3e+02 Score=24.26 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhh
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~ 220 (306)
.+.+.+..+.+|..++|..-+.=. ...+.+-. ..| .+.+++|.+.-+.+||+|--.++.-+-.
T Consensus 56 ~~R~~~YARllASiGINgvvlNNV---------Na~~~~Lt-------~~~-l~~v~~lAdvfRpYGIkv~LSvnFasP~ 118 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNV---------NANPKLLT-------PEY-LDKVARLADVFRPYGIKVYLSVNFASPI 118 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-S---------S--CGGGS-------TTT-HHHHHHHHHHHHHTT-EEEEEE-TTHHH
T ss_pred hhHHHHHHHHHhhcCCceEEeccc---------ccChhhcC-------HHH-HHHHHHHHHHHhhcCCEEEEEeeccCCc
Confidence 477888899999999998865211 11121111 112 3567888888899999999887753222
Q ss_pred hhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhCCC
Q psy11379 221 DSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 271 (306)
Q Consensus 221 ~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 271 (306)
.- |. ..+.||.+|+..++-++-.+|+=+.+|+
T Consensus 119 ~l-----------------gg--L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 119 EL-----------------GG--LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp HT-----------------TS---S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cc-----------------CC--cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 10 11 3477899999999999999999888775
No 138
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.14 E-value=1.9e+02 Score=27.42 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=43.1
Q ss_pred cCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHH
Q psy11379 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVI 200 (306)
Q Consensus 121 D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~ 200 (306)
++|.=+.|.-++.+.+++ |++.+.+.++..+...-..+.+ ++...|.+++ +.++++++.
T Consensus 219 hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~i----------eyvLI~GvND----------s~eda~~L~ 277 (342)
T PRK14465 219 NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRITF----------EYVMIPGVNM----------GRENANKLV 277 (342)
T ss_pred cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEEE----------EEEEECCccC----------CHHHHHHHH
Confidence 566666777777666655 7777777777665432222222 2222333331 778888888
Q ss_pred HHHHHc--CCeEEec
Q psy11379 201 EYARLR--GIRVIPE 213 (306)
Q Consensus 201 ~~a~~~--gi~vIPe 213 (306)
++++.. .+++||-
T Consensus 278 ~ll~~l~~kVnLIPy 292 (342)
T PRK14465 278 KIARSLDCKINVIPL 292 (342)
T ss_pred HHHhhCCCcEEEEcc
Confidence 888874 4455664
No 139
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=26.96 E-value=1.7e+02 Score=26.07 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhh
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 268 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~ 268 (306)
+.|.-+....+++.|+++||+|- ||+..|....|.... .+ ..++..+.+.+-+++++..
T Consensus 11 G~~n~~~~D~~~~~a~~~gi~v~------gH~l~W~~~~P~W~~-------------~~--~~~~~~~~~~~~i~~v~~r 69 (254)
T smart00633 11 GQFNFSGADAIVNFAKENGIKVR------GHTLVWHSQTPDWVF-------------NL--SKETLLARLENHIKTVVGR 69 (254)
T ss_pred CccChHHHHHHHHHHHHCCCEEE------EEEEeecccCCHhhh-------------cC--CHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999994 787767544443321 01 1345556666667777666
Q ss_pred CCCC
Q psy11379 269 FPES 272 (306)
Q Consensus 269 f~~~ 272 (306)
+.++
T Consensus 70 y~g~ 73 (254)
T smart00633 70 YKGK 73 (254)
T ss_pred hCCc
Confidence 6543
No 140
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=26.96 E-value=2.3e+02 Score=25.49 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=44.0
Q ss_pred CcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 138 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 138 ~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
+..-+.+.++++.+...++..=.+++.++ |.-....+-- .+++ ..+ .+.+++++..+++|+++++-++-
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~~~~~f~~-----~~d~-~~F--pdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTDGYGDFTF-----DWDA-GKF--PNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcc--cccCCceeee-----ecCh-hhC--CCHHHHHHHHHHCCCEEEEEeCh
Confidence 44678999999999998888777776443 2211111100 0110 112 13788999999999999998764
No 141
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.68 E-value=60 Score=29.48 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhhhcCCccc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~~~~p~l~ 231 (306)
..+++++++++.++|...|++++-|+-+..-....+...+.+.
T Consensus 140 ~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~ii 182 (254)
T PF00218_consen 140 AILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADII 182 (254)
T ss_dssp GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEE
Confidence 6789999999999999999999999988888776655555543
No 142
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.55 E-value=66 Score=25.20 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=35.8
Q ss_pred eecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy11379 131 LVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRV 210 (306)
Q Consensus 131 ~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~v 210 (306)
-+|..--+.|.+.+.+.++++...+...+.++.+ ++-+++++.|++.|+++
T Consensus 55 ~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g-----------------------------~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 55 PIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG-----------------------------AESEELIEAAREAGIRV 105 (116)
T ss_dssp T-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT-----------------------------S--HHHHHHHHHTT-EE
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc-----------------------------hHHHHHHHHHHHcCCEE
Confidence 4666666678899999999999988887777532 23478888999999999
Q ss_pred E
Q psy11379 211 I 211 (306)
Q Consensus 211 I 211 (306)
+
T Consensus 106 i 106 (116)
T PF13380_consen 106 I 106 (116)
T ss_dssp E
T ss_pred E
Confidence 8
No 143
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=26.31 E-value=5.6e+02 Score=24.18 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=80.7
Q ss_pred HHHHHHHhHHhhcCcceeE-EEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhh
Q psy11379 142 KAIKKQLDIMSYNKLNVLH-WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220 (306)
Q Consensus 142 ~~i~~~id~ma~~k~N~l~-lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~ 220 (306)
+++++++.+-...+-+..+ +-+.+.+.-+-++++.|.. ..||.+.+.+.++-+.+.||.=|-.+-.|.+-
T Consensus 15 ~~~R~lv~Et~l~~~dlI~PiFV~eg~~~~~~I~smPg~---------~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~K 85 (323)
T PRK09283 15 AALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGV---------YRLSIDLLVKEAEEAVELGIPAVALFGVPELK 85 (323)
T ss_pred HHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCc---------eeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCC
Confidence 5666666554333323222 3344444444455555543 34789999999999999999766554444331
Q ss_pred -----h-------------hhhhcCCcccc-----CCCCCccCCccccCcC---CCChhHHHHHHHHHHHHHhhCCCCeE
Q psy11379 221 -----D-------------SMEPGMPQIHC-----HCPHRVEGKTFVGPLD---PTKNVTLDFVRDLFTELGQRFPESYV 274 (306)
Q Consensus 221 -----~-------------~~~~~~p~l~~-----~~~~~~~~~~~~~~l~---~~~~~t~~~~~~l~~e~~~~f~~~~~ 274 (306)
. .+.+..|++.. -|+.+..|. ++.++ +.|++|++.+.++---.++
T Consensus 86 d~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGH--cGil~~g~idND~Tl~~L~~~Al~~A~------- 156 (323)
T PRK09283 86 DEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGH--CGILEDGYVDNDETLELLAKQALSQAE------- 156 (323)
T ss_pred CcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCc--eecccCCcCcCHHHHHHHHHHHHHHHH-------
Confidence 1 12346788753 354454453 33443 3488999877665333332
Q ss_pred EecCCccCcccc--ccCHHHHHHHHhCCCCC
Q psy11379 275 HLGGDEVDFFCW--EQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 275 hiGgDEv~~~~~--~~~p~~~~~~~~~~~~~ 303 (306)
-|+|=|..+.- +.-.++++-+.++|+.+
T Consensus 157 -AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~ 186 (323)
T PRK09283 157 -AGADIVAPSDMMDGRVGAIREALDEAGFTD 186 (323)
T ss_pred -hCCCEEEcccccccHHHHHHHHHHHCCCCC
Confidence 46666544322 22256777777777643
No 144
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.30 E-value=95 Score=30.50 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHc--CCeEEecc--CCch
Q psy11379 143 AIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLR--GIRVIPEI--DTPG 218 (306)
Q Consensus 143 ~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~--gi~vIPei--d~Pg 218 (306)
...++++.|+..+.-+-|+|+ ++|+.+-.-|..-+ ..||.+++.++++.+++. ||.+.-.+ ..||
T Consensus 243 l~~ell~~~~~~~~g~~~l~i------glQSgsd~vLk~m~-----R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPg 311 (445)
T PRK14340 243 ISESLVRTIAARPNICNHIHL------PVQSGSSRMLRRMN-----RGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCG 311 (445)
T ss_pred cCHHHHHHHHhCCCCCCeEEE------CCCcCCHHHHHhcC-----CCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCC
Confidence 346778888776433335555 55665444443221 457999999999999998 88765543 4566
Q ss_pred hhh
Q psy11379 219 HTD 221 (306)
Q Consensus 219 H~~ 221 (306)
-+.
T Consensus 312 ET~ 314 (445)
T PRK14340 312 ETE 314 (445)
T ss_pred CCH
Confidence 663
No 145
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.75 E-value=2.3e+02 Score=27.95 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecccCCccccCCCCCcchhhH-HHHHhhccccccccccccccccce
Q psy11379 32 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTE-KMIKKVGLGARKMTLCNSTLVPFL 110 (306)
Q Consensus 32 ~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~~p~l~~~ga~~~~~~YT~-~ei~~l~~~ar~~~i~~~~lVp~l 110 (306)
.|++.|.+-+..++..+.-.+.|=-.|..+|...... | .++- +-++.+.. ||.+
T Consensus 173 r~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~-------~------~~~l~~Ll~~l~~------------I~G~ 227 (437)
T COG0621 173 RPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGG-------G------KPNLADLLRELSK------------IPGI 227 (437)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCC-------C------ccCHHHHHHHHhc------------CCCc
Confidence 5899999999999999999999988887777755432 0 1111 12222211 2221
Q ss_pred eeeeeeeeeecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCC
Q psy11379 111 FQIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAI 190 (306)
Q Consensus 111 ~~~~~~~~I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~ 190 (306)
.+ .|--+++ |.+..-++|+.++...-=.-|+|| |+++.+---|..- ...
T Consensus 228 ~r--------------iR~~~~~------P~~~~d~lI~~~~~~~kv~~~lHl------PvQsGsd~ILk~M-----~R~ 276 (437)
T COG0621 228 ER--------------IRFGSSH------PLEFTDDLIEAIAETPKVCPHLHL------PVQSGSDRILKRM-----KRG 276 (437)
T ss_pred eE--------------EEEecCC------chhcCHHHHHHHhcCCcccccccC------ccccCCHHHHHHh-----CCC
Confidence 11 1111111 346777889999885323336666 7777654444422 267
Q ss_pred CCHHHHHHHHHHHHHcCCeEEecc--------CCchhhh
Q psy11379 191 YTEKMIKSVIEYARLRGIRVIPEI--------DTPGHTD 221 (306)
Q Consensus 191 yt~~~v~~l~~~a~~~gi~vIPei--------d~PgH~~ 221 (306)
||.++..++++--++ .+|++ -.||=+.
T Consensus 277 yt~e~~~~~i~k~R~----~~Pd~~i~tDiIVGFPgETe 311 (437)
T COG0621 277 YTVEEYLEIIEKLRA----ARPDIAISTDIIVGFPGETE 311 (437)
T ss_pred cCHHHHHHHHHHHHH----hCCCceEeccEEEECCCCCH
Confidence 999999999999886 46654 3566663
No 146
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.37 E-value=1e+02 Score=25.63 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEeeccCCCcceeecc
Q psy11379 33 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKK 68 (306)
Q Consensus 33 ~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~~~~~ 68 (306)
.++.|+++|+.|...+++.|.+.- .+|++.+.+
T Consensus 2 d~~~I~~Li~~~~~s~l~ele~~~---~~~~i~l~k 34 (155)
T PRK06302 2 DIRKIKKLIELVDESGISEFEIKE---GEESVRISR 34 (155)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEc---CCEEEEEEe
Confidence 468899999999999999999854 457887755
No 147
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=25.20 E-value=2e+02 Score=25.52 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=45.6
Q ss_pred cccceecCCCCCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q psy11379 127 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLR 206 (306)
Q Consensus 127 ~Rg~~lD~~r~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~ 206 (306)
.-|+.+|+...- +.+.+.+.++....+..+.+-+-+ +-.+++|++|+.++.+|+...
T Consensus 134 a~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv----------------------Nl~~YLt~eei~el~~~i~~~ 190 (216)
T TIGR01866 134 ALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI----------------------NSGAFLTKDELAELQKFISYT 190 (216)
T ss_pred hcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE----------------------cHHHhCCHHHHHHHHHHHHHh
Confidence 457888877765 778888888877776555443311 113678999999999999998
Q ss_pred CCeEEe
Q psy11379 207 GIRVIP 212 (306)
Q Consensus 207 gi~vIP 212 (306)
.+.|+-
T Consensus 191 ~~~vll 196 (216)
T TIGR01866 191 KLTVLF 196 (216)
T ss_pred cccEEE
Confidence 887764
No 148
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=24.89 E-value=1.3e+02 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhhh
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTD 221 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~ 221 (306)
..+|.++|.+-++|+-+.|+.+--|.+-++|..
T Consensus 12 PpLTdeqI~kQI~Y~i~~GW~p~iEft~~~~~~ 44 (138)
T CHL00130 12 PDLTDQQIEKQIQYAISKGWALNVEWTDDPHPR 44 (138)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEecCCCCcC
Confidence 457999999999999999999999999999874
No 149
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=24.86 E-value=4e+02 Score=28.94 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCchhhh
Q psy11379 193 EKMIKSVIEYARLRGIRVIPEIDTPGHTD 221 (306)
Q Consensus 193 ~~~v~~l~~~a~~~gi~vIPeid~PgH~~ 221 (306)
..|+|++|+-|.++||+||-++ ++-|+.
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDV-VyNHt~ 430 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDV-VYNHTN 430 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe-eccccc
Confidence 3799999999999999999765 456664
No 150
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.79 E-value=1.8e+02 Score=26.12 Aligned_cols=89 Identities=22% Similarity=0.211 Sum_probs=50.6
Q ss_pred Ccccceec---CCCCCcCHHHHHHHHhHHhhcCcce--eEEEeecCCccccccccC--CCccccCCCCC--------CCC
Q psy11379 126 PHRGLLVD---GSRHYLPIKAIKKQLDIMSYNKLNV--LHWHLVDDQSFPYESKKF--PSLSLKGAFGP--------DAI 190 (306)
Q Consensus 126 ~~Rg~~lD---~~r~~~~~~~i~~~id~ma~~k~N~--l~lHi~dde~~~~~~~~~--p~l~~~g~~~~--------~~~ 190 (306)
.++|++|. .+|.++|+...++.++.+...--=. .|.=+.| |+. +++-.+ -......-... ...
T Consensus 55 Gy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvd-E~~-~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ 132 (275)
T COG1856 55 GYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVD-ESD-LEKLKEELVDVVSLDFVGDNDVIKRVYKLP 132 (275)
T ss_pred CceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEeeecc-HHH-HHHHHHhcCcEEEEeecCChHHHHHHHcCC
Confidence 35677664 5678889888888888876531112 2433333 111 011001 00000000000 245
Q ss_pred CCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 191 YTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 191 yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
.|.++..+...+.++.||+|+|.|=.
T Consensus 133 ksv~dyl~~l~~L~e~~irvvpHiti 158 (275)
T COG1856 133 KSVEDYLRSLLLLKENGIRVVPHITI 158 (275)
T ss_pred ccHHHHHHHHHHHHHcCceeceeEEE
Confidence 68889999999999999999998743
No 151
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=24.62 E-value=1.2e+02 Score=29.33 Aligned_cols=67 Identities=25% Similarity=0.403 Sum_probs=40.4
Q ss_pred CHHHHHHHHhHHhhcCc----ceeEEEeecCCccccccccCCCccccCCCCCC--CCCCHHHHHHHHHHHH--HcCCeEE
Q psy11379 140 PIKAIKKQLDIMSYNKL----NVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD--AIYTEKMIKSVIEYAR--LRGIRVI 211 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~----N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~--~~yt~~~v~~l~~~a~--~~gi~vI 211 (306)
|.+.+++.++.+..+.- ..+=+|+++ |+-.+ ..+|+-+|. ..-+.++++++++-++ -+=|++-
T Consensus 99 ~~e~i~~al~~~~e~~~~~ga~ilGiHLEG----P~ls~-----~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlA 169 (380)
T COG1820 99 SLEKIKAALRAIREAIAKGGAQILGIHLEG----PFLSP-----EKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLA 169 (380)
T ss_pred CHHHHHHHHHHHHHHHhccCCceEEEEeec----CccCH-----hhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEEC
Confidence 35677777766654433 556789988 33222 125665542 3446777777777666 3336778
Q ss_pred eccC
Q psy11379 212 PEID 215 (306)
Q Consensus 212 Peid 215 (306)
||.+
T Consensus 170 PE~~ 173 (380)
T COG1820 170 PELD 173 (380)
T ss_pred CCCC
Confidence 8887
No 152
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.54 E-value=1.7e+02 Score=25.78 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEeccCCchhhhhhh
Q psy11379 192 TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSME 224 (306)
Q Consensus 192 t~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~ 224 (306)
|+.--.+|+++|+++|+-+||-.-+|.-.....
T Consensus 94 sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 94 SPSFNRETAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 444456888999999999999999987775444
No 153
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=22.46 E-value=6.3e+02 Score=27.74 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
.|.+-+.++++++.+...++.+=-+++..| |.-++.. . .|++ ..| -+.+++++.-+++|+.+|+-+|
T Consensus 196 ~Y~sq~eV~eva~~fre~~IP~DvIwlDid--Ym~g~~~---F----TwD~-~rF--PdP~~mv~~Lh~~G~kvv~iid- 262 (978)
T PLN02763 196 SYESAKRVAEIARTFREKKIPCDVVWMDID--YMDGFRC---F----TFDK-ERF--PDPKGLADDLHSIGFKAIWMLD- 262 (978)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEehh--hhcCCCc---e----eECc-ccC--CCHHHHHHHHHHCCCEEEEEEc-
Confidence 445678999999999988887755555322 2111110 0 1111 111 1367888999999999999875
Q ss_pred chhhhhhhhcCCccccCCCC-----CccCCc--------cccCcCCCChhHHHHHHHHHHHHHh
Q psy11379 217 PGHTDSMEPGMPQIHCHCPH-----RVEGKT--------FVGPLDPTKNVTLDFVRDLFTELGQ 267 (306)
Q Consensus 217 PgH~~~~~~~~p~l~~~~~~-----~~~~~~--------~~~~l~~~~~~t~~~~~~l~~e~~~ 267 (306)
||=.. -.+|+.....+.. ...|++ ...-.|.++|++.++..++++++.+
T Consensus 263 PgI~~--d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d 324 (978)
T PLN02763 263 PGIKA--EEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS 324 (978)
T ss_pred CCCcc--CCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc
Confidence 32211 0011111100000 001111 1235699999999999999888754
No 154
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=22.40 E-value=1.2e+02 Score=28.29 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEecCCc-------cCccccccCHHHHHHHHhCCCCC
Q psy11379 254 TLDFVRDLFTELGQRFPESYVHLGGDE-------VDFFCWEQNPEIKAFMSSGDEVD 303 (306)
Q Consensus 254 t~~~~~~l~~e~~~~f~~~~~hiGgDE-------v~~~~~~~~p~~~~~~~~~~~~~ 303 (306)
+.+=+-+-++-+.++.....+=||+|= .......+-|.+.+.|.+.|+++
T Consensus 247 ~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~ 303 (320)
T PF01244_consen 247 SLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSE 303 (320)
T ss_dssp BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-H
T ss_pred cHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCH
Confidence 344344445666676666677788772 22233456689999999998864
No 155
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=22.33 E-value=1.1e+02 Score=23.41 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=34.3
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC--CeEEec
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRG--IRVIPE 213 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~g--i~vIPe 213 (306)
...+.+.+.+.|+.+........++.+++.| |.+ .+..+++.++++++++++ +.+.-.
T Consensus 27 ~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGE---------Pll----------~~~~~~l~~~i~~~~~~~~~~~i~i~ 86 (119)
T PF13394_consen 27 EEMSIEELEEIIDELKEKGFRPSTVVFTGGE---------PLL----------YLNPEDLIELIEYLKERGPEIKIRIE 86 (119)
T ss_dssp GS--HHHHHHHHHHHHHTT----EEEEESSS---------GGG----------STTHHHHHHHHCTSTT-----EEEEE
T ss_pred CcccHhHHHHHHHHHHhcCCceEEEEEECCC---------Ccc----------ccCHHHHHHHHHHHHhhCCCceEEEE
Confidence 4456789999999888877766778887755 221 124567889999998888 555433
No 156
>PRK02227 hypothetical protein; Provisional
Probab=22.27 E-value=1.1e+02 Score=27.42 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=26.0
Q ss_pred CCccceeeecCCC-------CCCHHHHHHHHHHHHhcCC
Q psy11379 18 FPHRGLLVDGSRH-------YLPIKAIKKQLDIMSYNKL 49 (306)
Q Consensus 18 ~~~rg~~lD~~R~-------~~~~~~l~~~id~ma~~k~ 49 (306)
-.+.|+||||+-+ |++.+.|.++++..-.+++
T Consensus 143 aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl 181 (238)
T PRK02227 143 AGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGL 181 (238)
T ss_pred cCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHccc
Confidence 3568999999864 5899999999998876654
No 157
>KOG0464|consensus
Probab=22.23 E-value=73 Score=31.23 Aligned_cols=27 Identities=44% Similarity=0.736 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCeE-------------EeccCCchhhhh
Q psy11379 196 IKSVIEYARLRGIRV-------------IPEIDTPGHTDS 222 (306)
Q Consensus 196 v~~l~~~a~~~gi~v-------------IPeid~PgH~~~ 222 (306)
+.++++.-++|||+| |-.||+|||...
T Consensus 76 vtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 76 VTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred HHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 677788889999998 448999999963
No 158
>KOG0673|consensus
Probab=22.17 E-value=1e+02 Score=27.68 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCCChhHHHHHHHHHHHHHhhCCCCeEEecCCccC
Q psy11379 248 DPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVD 282 (306)
Q Consensus 248 ~~~~~~t~~~~~~l~~e~~~~f~~~~~hiGgDEv~ 282 (306)
=|-|-++|.++.-|+..+.++-|..|+|.=||--.
T Consensus 203 VPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahv 237 (293)
T KOG0673|consen 203 VPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHV 237 (293)
T ss_pred ccchhHHHHHHHHHHHHHhCCCCCceEEecchhhh
Confidence 36677999999999999999999999998888643
No 159
>PRK15452 putative protease; Provisional
Probab=21.88 E-value=3.1e+02 Score=27.08 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCchhh
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTPGHT 220 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~ 220 (306)
..++.+++++.+++|+++|++|..-+++.-|-
T Consensus 41 ~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e 72 (443)
T PRK15452 41 NEFNHENLALGINEAHALGKKFYVVVNIAPHN 72 (443)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH
Confidence 34688999999999999999998887766665
No 160
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=21.53 E-value=2.3e+02 Score=29.29 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=50.9
Q ss_pred hHHHHHhhccccccccccccccccceeeeeeeeeeecCCCCCccccee-cCCCCCcCHHHHHHHHhHHhhcCccee----
Q psy11379 85 TEKMIKKVGLGARKMTLCNSTLVPFLFQIIRVQTIEDFPQFPHRGLLV-DGSRHYLPIKAIKKQLDIMSYNKLNVL---- 159 (306)
Q Consensus 85 T~~ei~~l~~~ar~~~i~~~~lVp~l~~~~~~~~I~D~P~~~~Rg~~l-D~~r~~~~~~~i~~~id~ma~~k~N~l---- 159 (306)
+.+-..++..|.+.+|+|.++++|--..++. ..|.+.++.. -+.+.|=+.+.+|++||+.-..++.++
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~-------~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V 235 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGD-------RSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWV 235 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCC-------CCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 3455666788889999988888885332221 2233444432 344445578999999999999999987
Q ss_pred EEEeecCC
Q psy11379 160 HWHLVDDQ 167 (306)
Q Consensus 160 ~lHi~dde 167 (306)
+=|++.|.
T Consensus 236 ~~HF~~d~ 243 (628)
T COG0296 236 PNHFPPDG 243 (628)
T ss_pred CCcCCCCc
Confidence 34666654
No 161
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=21.43 E-value=8.9e+02 Score=24.77 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=80.2
Q ss_pred eecCCCCCcccceecCCCCCcCHHHHHHHHhHHhhc-CcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHH
Q psy11379 119 IEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYN-KLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIK 197 (306)
Q Consensus 119 I~D~P~~~~Rg~~lD~~r~~~~~~~i~~~id~ma~~-k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~ 197 (306)
-.+.|...+||+-+...+. +.++..++.+... ....+.+ .+|-++ |.+|++
T Consensus 349 ~E~NP~LG~RgiR~~l~~~----~~f~~QlrAilra~~~G~~~I-------------m~PmV~-----------t~eE~~ 400 (575)
T PRK11177 349 KEENPFLGWRAIRIAMDRK----EILHDQLRAILRASAFGKLRI-------------MFPMII-----------SVEEVR 400 (575)
T ss_pred CCCCcccccchhhhcCCCH----HHHHHHHHHHHHHHcCCCcEE-------------EEcCCC-----------CHHHHH
Confidence 4788999999975555442 4555556555332 1112222 245444 666654
Q ss_pred H---HHHHHHH----------cCCeEEeccCCchhhhhh---hhcCCccccCCCC---C-----ccCCc-cccCcCCCCh
Q psy11379 198 S---VIEYARL----------RGIRVIPEIDTPGHTDSM---EPGMPQIHCHCPH---R-----VEGKT-FVGPLDPTKN 252 (306)
Q Consensus 198 ~---l~~~a~~----------~gi~vIPeid~PgH~~~~---~~~~p~l~~~~~~---~-----~~~~~-~~~~l~~~~~ 252 (306)
+ +++++.. .++.+.+=|++|.-+... .+ +=++..-..+ + +-+++ -....+|.+|
T Consensus 401 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~-~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hP 479 (575)
T PRK11177 401 ELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK-EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSP 479 (575)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh-hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCH
Confidence 4 4555433 457788888898777432 22 1111111111 0 00111 1236789999
Q ss_pred hHHHHHHHHHHHHHhhC----------CCC-----eEEecCCccCccccccCHHHHHHHHhC
Q psy11379 253 VTLDFVRDLFTELGQRF----------PES-----YVHLGGDEVDFFCWEQNPEIKAFMSSG 299 (306)
Q Consensus 253 ~t~~~~~~l~~e~~~~f----------~~~-----~~hiGgDEv~~~~~~~~p~~~~~~~~~ 299 (306)
+.+..++.+++.....= .++ ++.+|-||..++.. .-|.+++.+.+.
T Consensus 480 av~~~i~~v~~~a~~~g~~v~vCGe~A~dp~~~~lLlglGi~~lSm~p~-~i~~vk~~i~~~ 540 (575)
T PRK11177 480 SVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAI-SIPRIKKIIRNT 540 (575)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHCCCCeEEECHH-HHHHHHHHHHhC
Confidence 99999999988875421 111 45577777654322 225555555443
No 162
>PLN03059 beta-galactosidase; Provisional
Probab=21.41 E-value=6.1e+02 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=43.7
Q ss_pred CHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEecc
Q psy11379 140 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEI 214 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPei 214 (306)
|.+...+.|..|-..++|.+..++ -|.+..+ + .|.|+=. ...++.++++.|++.|+-||--+
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV----~Wn~HEp---~---~G~~dF~---G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYV----FWNGHEP---S---PGNYYFE---DRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEe----cccccCC---C---CCeeecc---chHHHHHHHHHHHHcCCEEEecC
Confidence 468888999999999999996554 2222222 1 2333211 35689999999999999998754
No 163
>smart00642 Aamy Alpha-amylase domain.
Probab=21.34 E-value=2.1e+02 Score=23.87 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEeec--cC----CCcceeecccCCccccCCCCCcchh-hHHHHHhhccccccccc
Q psy11379 32 LPIKAIKKQLDIMSYNKLNVLHWHLV--DD----QSFPYESKKFPSLSLKGAFGPDAIY-TEKMIKKVGLGARKMTL 101 (306)
Q Consensus 32 ~~~~~l~~~id~ma~~k~N~lh~hl~--d~----~~~~~~~~~~p~l~~~ga~~~~~~Y-T~~ei~~l~~~ar~~~i 101 (306)
=.++.|.+-++.++..++|.+++--. .. ..+.+....|-.+. ..| |.++++.++..++..++
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~--------~~~Gt~~d~~~lv~~~h~~Gi 84 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID--------PRFGTMEDFKELVDAAHARGI 84 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC--------cccCCHHHHHHHHHHHHHCCC
Confidence 34788888899999999999998221 11 12333333333222 122 67999999988888877
No 164
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.27 E-value=2.9e+02 Score=26.05 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred CHHHHHHHHhHHhhcCccee--EEEeecCCccccccccCCC--ccccCCCC--------CCCCCCHHHHHHHHHHHHHcC
Q psy11379 140 PIKAIKKQLDIMSYNKLNVL--HWHLVDDQSFPYESKKFPS--LSLKGAFG--------PDAIYTEKMIKSVIEYARLRG 207 (306)
Q Consensus 140 ~~~~i~~~id~ma~~k~N~l--~lHi~dde~~~~~~~~~p~--l~~~g~~~--------~~~~yt~~~v~~l~~~a~~~g 207 (306)
+++..+++|+..+..+.... |.+..+.. . .+..+. ......|. ....++.++.++|.+||++.|
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDL--V--SKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHh--h--CcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 68999999999998887765 44322211 1 111111 00000111 024578899999999999999
Q ss_pred CeEEeccCCchhhh
Q psy11379 208 IRVIPEIDTPGHTD 221 (306)
Q Consensus 208 i~vIPeid~PgH~~ 221 (306)
|.++-+.=-..+..
T Consensus 90 i~~~stpfd~~svd 103 (329)
T TIGR03569 90 IEFLSTPFDLESAD 103 (329)
T ss_pred CcEEEEeCCHHHHH
Confidence 99998765555554
No 165
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=21.13 E-value=6.4e+02 Score=23.04 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHhhcCcceeEEEeecCCcccccc-ccCCCcc---ccCC-C---CCCCCCCHHHHHHHHHHHHHcCCeEE
Q psy11379 141 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES-KKFPSLS---LKGA-F---GPDAIYTEKMIKSVIEYARLRGIRVI 211 (306)
Q Consensus 141 ~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~-~~~p~l~---~~g~-~---~~~~~yt~~~v~~l~~~a~~~gi~vI 211 (306)
.+..+..++..+..++|++++.+.-.. ..... ..+|... +.+. + ++...| =+.+.++|+.|.++||.+.
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~-~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y-F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQW-DGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY-FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSS-S-B----TTS-BS-SSTT------TT----H-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCc-ccccccccCCCcCCCCCCccccCCCCCCHHH-HHHHHHHHHHHHHCCCeEE
Confidence 477888899999999999998764421 00000 1122211 1110 0 112333 2579999999999999763
No 166
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=21.12 E-value=4.6e+02 Score=22.37 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEeccCCc
Q psy11379 189 AIYTEKMIKSVIEYARLRGIRVIPEIDTP 217 (306)
Q Consensus 189 ~~yt~~~v~~l~~~a~~~gi~vIPeid~P 217 (306)
..+|.++|.+-|+|+-+.|+..--|.+-+
T Consensus 74 PpLtdeqI~kQVeYli~~GW~pclEf~~~ 102 (176)
T PLN02289 74 PDLTDEELAKEVDYLLRNKWVPCLEFELE 102 (176)
T ss_pred CCCCHHHHHHHHHHHHhCCCeeeeeeccC
Confidence 46799999999999999999877787744
No 167
>KOG0256|consensus
Probab=21.09 E-value=5.7e+02 Score=25.18 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=41.2
Q ss_pred ceecCCCCCcC-HHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q psy11379 130 LLVDGSRHYLP-IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGI 208 (306)
Q Consensus 130 ~~lD~~r~~~~-~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi 208 (306)
++++.+.+|-= ++.+..-..+.-....++==+-+++ ++-|. +..|+++++..++.+|++++|
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNPL---------G~~~~~e~L~~ll~Fa~~kni 260 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNPL---------GTTLSPEELISLLNFASRKNI 260 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCCC---------CCccCHHHHHHHHHHHhhcce
Confidence 35666666432 5666655555544444433332322 11111 367899999999999999999
Q ss_pred eEEe
Q psy11379 209 RVIP 212 (306)
Q Consensus 209 ~vIP 212 (306)
.||-
T Consensus 261 HvI~ 264 (471)
T KOG0256|consen 261 HVIS 264 (471)
T ss_pred EEEe
Confidence 9887
No 168
>PRK14129 heat shock protein HspQ; Provisional
Probab=20.63 E-value=1e+02 Score=23.95 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=34.2
Q ss_pred eEEecCCCCccceeeecCCCC-CCHHHHHHHHHHHHhcCCcEEEEeeccCCCcce
Q psy11379 11 TIEDFPQFPHRGLLVDGSRHY-LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPY 64 (306)
Q Consensus 11 ~i~d~p~~~~rg~~lD~~R~~-~~~~~l~~~id~ma~~k~N~lh~hl~d~~~~~~ 64 (306)
.+.---.|+||||.+|+=--| .+-++...+-..-..-.-=.-|+=++|+++..+
T Consensus 10 Q~VrHrl~~yrGVV~DVDP~fs~~e~w~~~ia~~~p~kdqPwYHvl~en~~~~~v 64 (105)
T PRK14129 10 QQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDELRAAPWYHVVMEDDDGQPV 64 (105)
T ss_pred cEEEEeecCCCeEEEeeCCCcCCCchhHHhhccCCCccCCCceEEEEEcCCCceE
Confidence 344445689999999999999 566665444432222223345777777777744
No 169
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=20.63 E-value=7.1e+02 Score=23.37 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=60.5
Q ss_pred CCcCHHHHHHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCC
Q psy11379 137 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDT 216 (306)
Q Consensus 137 ~~~~~~~i~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~ 216 (306)
.+.+-+.++++++.+...++..=.+++-.| |.- .+...+ +++ ..+ -+.+++++..++.|+.+|+-++-
T Consensus 19 ~Y~~~~ev~~v~~~~r~~~IP~D~i~lDid--y~~---~~~~Ft----~d~-~~F--Pdp~~mv~~L~~~G~klv~~i~P 86 (332)
T cd06601 19 GYSNRSDLEEVVEGYRDNNIPLDGLHVDVD--FQD---NYRTFT----TNG-GGF--PNPKEMFDNLHNKGLKCSTNITP 86 (332)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCceEEEcCc--hhc---CCCcee----ecC-CCC--CCHHHHHHHHHHCCCeEEEEecC
Confidence 344678999999999888877655555332 211 111111 111 111 13578888889999999988762
Q ss_pred chhhhhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHH
Q psy11379 217 PGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELG 266 (306)
Q Consensus 217 PgH~~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~ 266 (306)
--. ... ....+ ..-.|.++|++.+.-.++++.+.
T Consensus 87 ~i~---~g~--------~~~~~-----~~~pDftnp~ar~wW~~~~~~l~ 120 (332)
T cd06601 87 VIS---YGG--------GLGSP-----GLYPDLGRPDVREWWGNQYKYLF 120 (332)
T ss_pred cee---cCc--------cCCCC-----ceeeCCCCHHHHHHHHHHHHHHH
Confidence 111 000 00000 22568899999998888877765
No 170
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.57 E-value=3.9e+02 Score=20.37 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCeEEe-ccCCchhh--hhhhhcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhCC-C
Q psy11379 196 IKSVIEYARLRGIRVIP-EIDTPGHT--DSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP-E 271 (306)
Q Consensus 196 v~~l~~~a~~~gi~vIP-eid~PgH~--~~~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~-~ 271 (306)
++-+..+.+..|++|+- ..++|--. ....+..|++.. +..++...+..+.++++++.+..+ +
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~--------------iS~~~~~~~~~~~~~i~~l~~~~~~~ 81 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIG--------------LSGLLTTHMTLMKEVIEELKEAGLDD 81 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEE--------------EeccccccHHHHHHHHHHHHHcCCCC
Confidence 55666778899999865 34444211 222334444432 223345556778888888888877 6
Q ss_pred CeEEecCCc
Q psy11379 272 SYVHLGGDE 280 (306)
Q Consensus 272 ~~~hiGgDE 280 (306)
..+-+||-=
T Consensus 82 ~~i~vGG~~ 90 (119)
T cd02067 82 IPVLVGGAI 90 (119)
T ss_pred CeEEEECCC
Confidence 778899853
No 171
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.24 E-value=3.4e+02 Score=24.10 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEEe
Q psy11379 191 YTEKMIKSVIEYARLRGIRVIP 212 (306)
Q Consensus 191 yt~~~v~~l~~~a~~~gi~vIP 212 (306)
-+.+.+++.++.|+..|...|-
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALV 102 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE
Confidence 3456788899999999996544
No 172
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.09 E-value=7.4e+02 Score=23.38 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=62.9
Q ss_pred HHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCeEEeccCCchhhhhhh
Q psy11379 145 KKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSME 224 (306)
Q Consensus 145 ~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~gi~vIPeid~PgH~~~~~ 224 (306)
+.+++.|...++|...+++=-| |.- + +..+.+.+.++.+-|++.|++|...+=- +..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~----------P~~---~-----g~~~~~~~~~~akrak~~Gm~vlldfHY---SD~Wa 85 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN----------PYD---G-----GYNDLEDVIALAKRAKAAGMKVLLDFHY---SDFWA 85 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------TT---T-----TTTSHHHHHHHHHHHHHTT-EEEEEE-S---SSS--
T ss_pred CCHHHHHHhcCCCeEEEEeccC----------Ccc---c-----ccCCHHHHHHHHHHHHHCCCeEEEeecc---cCCCC
Confidence 4567778889999998877333 221 2 4568999999999999999999976421 11232
Q ss_pred hcCCccccCCCCCccCCccccCcCCCChhHHHHHHHHHHHHHhhC-CCCeEEecCCccCc-ccc
Q psy11379 225 PGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF-PESYVHLGGDEVDF-FCW 286 (306)
Q Consensus 225 ~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f-~~~~~hiGgDEv~~-~~~ 286 (306)
.-..+.....+. ...++....+.+++.+++++++.+.= ...++-|| -|++. -.|
T Consensus 86 DPg~Q~~P~aW~-------~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVG-NEin~Gmlw 141 (332)
T PF07745_consen 86 DPGKQNKPAAWA-------NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVG-NEINNGMLW 141 (332)
T ss_dssp BTTB-B--TTCT-------SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEES-SSGGGESTB
T ss_pred CCCCCCCCccCC-------CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeC-ccccccccC
Confidence 111111111111 11233334667788888888886532 34688888 67654 445
No 173
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.00 E-value=1.6e+02 Score=28.87 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHHhHHhhcCcceeEEEeecCCccccccccCCCccccCCCCCCCCCCHHHHHHHHHHHHHc--CCeEEecc--CCchhh
Q psy11379 145 KKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLR--GIRVIPEI--DTPGHT 220 (306)
Q Consensus 145 ~~~id~ma~~k~N~l~lHi~dde~~~~~~~~~p~l~~~g~~~~~~~yt~~~v~~l~~~a~~~--gi~vIPei--d~PgH~ 220 (306)
.++++.|+..+--+-|+|+ ++++.+-.-|... ...||.+++.++++.+++. |+.+-..+ ..||=+
T Consensus 255 ~ell~~m~~~~~gc~~l~i------glQSgsd~vLk~m-----~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET 323 (455)
T PRK14335 255 DDLIATIAQESRLCRLVHL------PVQHGSNGVLKRM-----NRSYTREHYLSLVGKLKASIPNVALSTDILIGFPGET 323 (455)
T ss_pred HHHHHHHHhCCCCCCeEEE------ccCcCCHHHHHHc-----CCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCC
Confidence 5667777765322335555 4444333333221 1458999999999999998 88766543 455555
Done!