RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11379
(306 letters)
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 286 bits (733), Expect = 6e-94
Identities = 99/184 (53%), Positives = 125/184 (67%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+
Sbjct: 139 TINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQ 198
Query: 173 SKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC 232
S FP LS KG++ +YT ++ VIEYARLRGIRV+PE DTPGHT S G +
Sbjct: 199 SITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLT 258
Query: 233 HCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEI 292
C R GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I
Sbjct: 259 PCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKI 318
Query: 293 KAFM 296
+ FM
Sbjct: 319 QDFM 322
Score = 151 bits (383), Expect = 2e-42
Identities = 49/87 (56%), Positives = 62/87 (71%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
I TI D P+F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+
Sbjct: 139 TINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQ 198
Query: 66 SKKFPSLSLKGAFGPDAIYTEKMIKKV 92
S FP LS KG++ +YT ++ V
Sbjct: 199 SITFPELSNKGSYSLSHVYTPNDVRMV 225
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 281 bits (720), Expect = 6e-92
Identities = 106/185 (57%), Positives = 129/185 (69%), Gaps = 1/185 (0%)
Query: 113 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 172
I IEDFP+FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYE
Sbjct: 133 FINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYE 192
Query: 173 SKKFPSLSLKGAFGP-DAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 231
S FP L KG++ P IYT + +K VIEYARLRGIRV+ E DTPGHT S PG+P +
Sbjct: 193 SFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLL 252
Query: 232 CHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPE 291
C E GP++P+ N T +F+ F E+ FP+ Y+HLGGDEVDF CW+ NPE
Sbjct: 253 TPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPE 312
Query: 292 IKAFM 296
I+ FM
Sbjct: 313 IQDFM 317
Score = 147 bits (373), Expect = 7e-41
Identities = 54/88 (61%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 6 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 65
I IEDFP+FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYE
Sbjct: 133 FINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYE 192
Query: 66 SKKFPSLSLKGAFGP-DAIYTEKMIKKV 92
S FP L KG++ P IYT + +K+V
Sbjct: 193 SFTFPELMRKGSYNPVTHIYTAQDVKEV 220
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 274 bits (703), Expect = 1e-88
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 4/183 (2%)
Query: 118 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 177
I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+ + K P
Sbjct: 180 NISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRP 239
Query: 178 SLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC--- 234
+L GA P +YT+ I+ V+ + RG+RV+PE D P H C
Sbjct: 240 NLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDTDLTVCFKAEP 299
Query: 235 PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF-PESYVHLGGDEVDFFCWEQNPEIK 293
+ G L+PTK+ ++ D+++++ + F H+GGDEV CW + I+
Sbjct: 300 WKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQ 359
Query: 294 AFM 296
FM
Sbjct: 360 NFM 362
Score = 150 bits (381), Expect = 1e-41
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 11 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 70
I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+ + K P
Sbjct: 180 NISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRP 239
Query: 71 SLSLKGAFGPDAIYTEKMIKKV 92
+L GA P +YT+ I++V
Sbjct: 240 NLYKFGALSPQKVYTKAAIREV 261
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 254 bits (651), Expect = 3e-81
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 23/206 (11%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
+ ++ED P+F +RG ++D +RH++P + + +++M+ +KLNVLH HL DDQ + +
Sbjct: 127 VPRVSVEDKPRFGYRGTMLDVARHFMPKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQI 186
Query: 174 KKFPSLSLKGAFGPDA-----------------IYTEKMIKSVIEYARLRGIRVIPEIDT 216
++P L+ GA+ ++ YT+ ++ ++ +A R I VIPEID
Sbjct: 187 NRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDV 246
Query: 217 PGHTDSMEPGMPQIHCHC-----PHRVEGKTFV-GPLDPTKNVTLDFVRDLFTELGQRFP 270
PGH+ + P++ P V + + + +L+F R++ E+ + FP
Sbjct: 247 PGHSQAAIAAYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFP 306
Query: 271 ESYVHLGGDEVDFFCWEQNPEIKAFM 296
++ LGGDEV W+ + + +A
Sbjct: 307 SPWISLGGDEVPLTQWQASAQAQAKA 332
Score = 131 bits (332), Expect = 6e-35
Identities = 26/75 (34%), Positives = 50/75 (66%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
+ ++ED P+F +RG ++D +RH++P + + +++M+ +KLNVLH HL DDQ + +
Sbjct: 127 VPRVSVEDKPRFGYRGTMLDVARHFMPKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQI 186
Query: 67 KKFPSLSLKGAFGPD 81
++P L+ GA+ +
Sbjct: 187 NRYPKLTETGAWRRE 201
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 249 bits (637), Expect = 2e-79
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 8/178 (4%)
Query: 118 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 177
I D P++ +RGL++D +RH+ + +K+Q+D+ S K+N H HL DDQ + E K +P
Sbjct: 175 NISDKPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWP 234
Query: 178 SLSLKGAF-----GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC 232
L G+ GP YT++ K ++ YA R I VIPEID PGHT++ +++
Sbjct: 235 DLIEIGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNP 294
Query: 233 H---CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWE 287
R + L P +T FV D+ +EL P Y+HLGGDE +
Sbjct: 295 DGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESNATSAA 352
Score = 135 bits (341), Expect = 2e-36
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 11 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 70
I D P++ +RGL++D +RH+ + +K+Q+D+ S K+N H HL DDQ + E K +P
Sbjct: 175 NISDKPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWP 234
Query: 71 SLSLKGAF-----GPDAIYTEKMIKKV 92
L G+ GP YT++ K +
Sbjct: 235 DLIEIGSKGQVGGGPGGYYTQEQFKDI 261
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 240 bits (615), Expect = 4e-76
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
+ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 146 VAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAI 205
Query: 174 KKFPSLSLKGAF-----GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMP 228
+P L+ G GP YT+ K ++ YA R + V+PEID PGHT++
Sbjct: 206 DSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYA 265
Query: 229 QIHCHC---PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFC 285
+++C P K L K+VT DFV D+ EL P Y+H+GGDE
Sbjct: 266 ELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHSTP 325
Query: 286 WEQ 288
Sbjct: 326 KAD 328
Score = 131 bits (331), Expect = 7e-35
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
+ TIED P++ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ +
Sbjct: 146 VAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAI 205
Query: 67 KKFPSLSLKGAF-----GPDAIYTEKMIKKV 92
+P L+ G GP YT+ K++
Sbjct: 206 DSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 236
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 235 bits (600), Expect = 1e-75
Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 14/193 (7%)
Query: 117 QTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKF 176
GL++D +RH+ + IK +D +S + N LH H D +++ ES
Sbjct: 8 SIYPQKTSTKQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLL 67
Query: 177 PSLSLKGAFGPDA----------IYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPG 226
+ G D + + + + YA+ +GI +IPE+D+P H ++
Sbjct: 68 NQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKL 127
Query: 227 MPQIHCHC-PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF--PESYVHLGGDEVDF 283
+ + ++ + +D T ++ F++ L +E+ F + H+GGDE +
Sbjct: 128 VQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGY 187
Query: 284 FCWEQNPEIKAFM 296
N E +
Sbjct: 188 SVES-NHEFITYA 199
Score = 126 bits (318), Expect = 5e-34
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 10 QTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKF 69
GL++D +RH+ + IK +D +S + N LH H D +++ ES
Sbjct: 8 SIYPQKTSTKQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLL 67
Query: 70 PSLSLKGAFGPDAIYTEK 87
+ G D IY
Sbjct: 68 NQRAENAVQGKDGIYINP 85
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 204 bits (520), Expect = 6e-63
Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 28/210 (13%)
Query: 121 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 180
+ + + +D R Y + +K+ +D + LH + +D + +
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGND-GLRFMLDDMSITA 59
Query: 181 LKGAFGPDAI-------------------YTEKMIKSVIEYARLRGIRVIPEIDTPGHTD 221
+ D + TE + +I YA+ +GI +IP +++PGH D
Sbjct: 60 NGKTYASDDVKRAIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMD 119
Query: 222 SMEPGMPQIHCHCP-HRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLGG 278
++ M ++ P GK +D + F + L + F + ++G
Sbjct: 120 AILNAMKELGIQNPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGL 179
Query: 279 DEV-----DFFCWEQNPEIKAFMSSGDEVD 303
DE D W K + + G V
Sbjct: 180 DEYANDATDAKGWSVLQADKYYPNEGYPVK 209
Score = 102 bits (255), Expect = 8e-25
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 14 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 73
+ + + +D R Y + +K+ +D + LH + +D + +
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGND-GLRFMLDDMSITA 59
Query: 74 LKGAFGPDAIYTE 86
+ D +
Sbjct: 60 NGKTYASDDVKRA 72
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 186 bits (473), Expect = 6e-56
Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 24/210 (11%)
Query: 119 IEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPS 178
++ + +D R Y + +K+ +D S + +H L +D +
Sbjct: 2 SHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDG-LRFLLDDMTI 60
Query: 179 LSLKGAFGPDAI-------------------YTEKMIKSVIEYARLRGIRVIPEIDTPGH 219
+ + D + T+ + +IEYA+ + I +IP I++PGH
Sbjct: 61 TANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 120
Query: 220 TDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLG 277
D+M M ++ P K +D ++FV+ L + F + G
Sbjct: 121 MDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFG 180
Query: 278 GDEVDFFCWEQNP--EIKAFMSSGDEVDFF 305
DE +K + G ++
Sbjct: 181 TDEYANDATSAQGWYYLKWYQLYGKFAEYA 210
Score = 86.9 bits (215), Expect = 2e-19
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 12 IEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPS 71
++ + +D R Y + +K+ +D S + +H L +D +
Sbjct: 2 SHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDG-LRFLLDDMTI 60
Query: 72 LSLKGAFGPDAIYTE 86
+ + D +
Sbjct: 61 TANGKTYASDDVKKA 75
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 179 bits (456), Expect = 3e-51
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 47/229 (20%)
Query: 118 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 177
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P
Sbjct: 304 DASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 178 SLSLKGAF-----------------GPDAI---YTEKMIKSVIEYARLRGIRVIPEIDTP 217
L+ G GPD ++ + +I+YA+ R I VIPEID P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 218 GHT----DSMEPGMPQIHCH------------------CPHRVEGKTFVGPLDPTKNVTL 255
H SME ++H V+ L+P + +
Sbjct: 424 AHARAAVVSMEARYKKLHAAGKEQEANEFRLVDQTDTSNTTSVQFFNRQSYLNPCLDSSQ 483
Query: 256 DFVRDLFTELGQRFPES-----YVHLGGDEVDFFCWEQNPEIKAFMSSG 299
FV + E+ Q E+ H GG E KA G
Sbjct: 484 RFVDKVIGEIAQMHKEAGQPIKTWHFGGAEAKNIRLGAGYTDKAKPEPG 532
Score = 112 bits (282), Expect = 6e-28
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 11 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 70
D P+FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P
Sbjct: 304 DASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 71 SLSLKGAF-GPDAIYTEKMIKKVGLGARK 98
L+ G D T ++ + G G
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDV 392
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 166 bits (421), Expect = 4e-47
Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 17/198 (8%)
Query: 104 STLVPFLFQIIRVQTIEDFPQFPHRGLLVDGSRHYLP-IKAIKKQLDIMSYNKLNVLHWH 162
+ L L IE+ + + D SR+ + + + KK +++++ + +
Sbjct: 63 ALLSAALRSGQDEVQIEEEAAYEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFELY 122
Query: 163 LVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDS 222
+ D YE + P YT ++ + +YA + +P I T H +
Sbjct: 123 MEDT----YEIENQPYFGYFRGR-----YTVAELQEIEDYAADFDMSFVPCIQTLAHLSA 173
Query: 223 MEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVD 282
+ E + L + D + +F + +++G DE
Sbjct: 174 F------VKWGIKEVQELRDVEDILLIGEEKVYDLIEGMFQTMAH-LHTRKINIGMDEAH 226
Query: 283 FFCWEQNPEIKAFMSSGD 300
+ F +
Sbjct: 227 LVGLGRYLIKHGFQNRSL 244
Score = 78.5 bits (193), Expect = 2e-16
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 11 TIEDFPQFPHRGLLVDGSRHYLP-IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKF 69
IE+ + + D SR+ + + + KK +++++ + ++ D YE +
Sbjct: 77 QIEEEAAYEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFELYMEDT----YEIENQ 132
Query: 70 PSLSLKGAFGPDAIYTEKMIKKV 92
P YT ++++
Sbjct: 133 PYFGYFRGR-----YTVAELQEI 150
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 79.1 bits (194), Expect = 1e-16
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 22/178 (12%)
Query: 118 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 177
I D+P RG++ + Q+ NKLN + DD + ++
Sbjct: 142 NITDYPTVSARGIVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPY 201
Query: 178 SLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVI----PEIDTPGHTDSMEPGMPQIHCH 233
+ ++ +I + + + P ID D+ E +
Sbjct: 202 PE-----------SEMQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITK 250
Query: 234 CPHRVE--GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDE-VDFFCWEQ 288
+ ++F D ++ + + RF E +V GD +
Sbjct: 251 AESLYDMGVRSFAIYWDDIQDKSAAKHAQVL----NRFNEEFVKAKGDVKPLITVPTE 304
Score = 64.5 bits (156), Expect = 9e-12
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 11 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 70
I D+P RG++ + Q+ NKLN + DD + ++
Sbjct: 142 NITDYPTVSARGIVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPY 201
Query: 71 SLS 73
S
Sbjct: 202 PES 204
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 73.6 bits (179), Expect = 1e-14
Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 20/181 (11%)
Query: 114 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 173
I I D+P RG++ + Q+ NKLN + DD PY
Sbjct: 138 IPEVNITDYPTVSARGIVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDD---PYHR 194
Query: 174 KKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVI----PEIDTPGHTDSMEPGMPQ 229
+K+ P + ++ +I + + + P ID D+ E
Sbjct: 195 EKWRE--------PYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNH 246
Query: 230 IHCHCPHRVE--GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWE 287
+ + ++F D ++ + + + F ++ G +
Sbjct: 247 LITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKA---KGDVKPLITVPT 303
Query: 288 Q 288
+
Sbjct: 304 E 304
Score = 59.3 bits (142), Expect = 5e-10
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQ 60
I I D+P RG++ + Q+ NKLN + DD
Sbjct: 138 IPEVNITDYPTVSARGIVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDP 191
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 59.9 bits (144), Expect = 3e-10
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 110 LFQIIR-----VQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLV 164
Q+++ I+D+P +RG++ +A QL NK+N +
Sbjct: 107 FAQLLKDGKLPEVEIKDYPSVRYRGVVEGFYGTPWSHQARLSQLKFYGKNKMNTYIYGPK 166
Query: 165 DDQSFPYESKKFP 177
DD + + P
Sbjct: 167 DDPYHSAPNWRLP 179
Score = 59.9 bits (144), Expect = 4e-10
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 7 IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYES 66
+ I+D+P +RG++ +A QL NK+N + DD +
Sbjct: 116 LPEVEIKDYPSVRYRGVVEGFYGTPWSHQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPN 175
Query: 67 KKFP 70
+ P
Sbjct: 176 WRLP 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 38/249 (15%), Positives = 64/249 (25%), Gaps = 120/249 (48%)
Query: 109 FLFQI-IRVQTIEDFPQF-----------------PH-----RGL-------LVDGSRHY 138
LF I +R E +P P L V+ + +
Sbjct: 302 VLFFIGVRCY--EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 139 LPIKAIKKQLDIMSYN------------KLNVLHWHL-------VDDQS-FPYESKKFPS 178
LP KQ++I N L L+ L DQS P+ +K
Sbjct: 360 LPAG---KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-LK 415
Query: 179 LSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQI-------- 230
S + F P + +P H+ + P I
Sbjct: 416 FSNR--FLP--------------------------VASPFHSHLLVPASDLINKDLVKNN 447
Query: 231 ------HCHCP--HRVEGKTFVGPLDP---TKNVTLDFVRDLFT-----ELGQRFPESYV 274
P +G D + +++ V + E +F +++
Sbjct: 448 VSFNAKDIQIPVYDTFDGS------DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 275 HLGGDEVDF 283
+DF
Sbjct: 502 ------LDF 504
Score = 35.8 bits (82), Expect = 0.019
Identities = 38/245 (15%), Positives = 70/245 (28%), Gaps = 111/245 (45%)
Query: 23 LLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK-GA--F- 78
L + L + ++ ++ K N P + +SL GA
Sbjct: 339 LSISN----LTQEQVQDYVN-----KTN---------SHLPAGKQV--EISLVNGAKNLV 378
Query: 79 --G-PDAIYTEKMIKKVGLGARKM---TLCNSTLVPFLFQIIRVQTIEDFPQF-----P- 126
G P ++Y + L RK + + + +PF + ++ +F P
Sbjct: 379 VSGPPQSLYG------LNLTLRKAKAPSGLDQSRIPFSERKLKFSN-----RFLPVASPF 427
Query: 127 HRGLLV--------DGSRHYLPIKAIKKQLDIMSYN----------KLNV---------- 158
H LLV D ++ + A K + I Y+ ++
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNA--KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 159 --LHW---------HLVDDQSFPYESKKFPSLSLKGAFGPDAIYT-EKMIKSVIEYARLR 206
+ W H++D FGP + +
Sbjct: 486 LPVKWETTTQFKATHILD-------------------FGPGGASGLGVLTHRNKD---GT 523
Query: 207 GIRVI 211
G+RVI
Sbjct: 524 GVRVI 528
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 35.2 bits (80), Expect = 0.022
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 36/149 (24%)
Query: 137 HYLPIKAIKKQLDIMSYNKLNVL----HWHLVDDQSFPYE--SKKFPSLSLKGAFGPDAI 190
H L + + L + N + V + P K P L +
Sbjct: 79 HGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSL----- 133
Query: 191 YTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPT 250
++++ +I+ A GI V+ +D H + PL T
Sbjct: 134 ---QIMEKIIKKAGDLGIFVL--LD--------------YHRIGCTH------IEPLWYT 168
Query: 251 KNVTLDFVRDLFTELGQRFPESYVHLGGD 279
++ + + + + E+ +RF + + +G D
Sbjct: 169 EDFSEEDFINTWIEVAKRFGKYWNVIGAD 197
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside
hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP:
c.1.8.3
Length = 373
Score = 31.8 bits (71), Expect = 0.26
Identities = 23/162 (14%), Positives = 41/162 (25%), Gaps = 19/162 (11%)
Query: 144 IKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYA 203
+ S K+NV G + + + VI A
Sbjct: 44 VTNTFQQASKYKMNVARTWAFSHGGSRPLQSA------PGVYNEQMF---QGLDFVISEA 94
Query: 204 RLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPL---DPTKNVTLDFVRD 260
+ GI +I + + G Q R + T K + V+
Sbjct: 95 KKYGIHLIM---SLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKV 151
Query: 261 LFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSSGDEV 302
+ T + +Y D+ WE E + +
Sbjct: 152 VLTRVNTITKVAY----KDDPTILSWELINEPRCPSDLSGKT 189
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase,
mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio
mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Length = 440
Score = 31.9 bits (71), Expect = 0.28
Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 10/167 (5%)
Query: 142 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKSVIE 201
+ K+LD + +N L V ++S + K + G + + + + ++
Sbjct: 62 DRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLL---QGLDYLLV 118
Query: 202 YARLRGIRVIPEI-----DTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLD--PTKNVT 254
R + V+ + G T M + E + F+
Sbjct: 119 ELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKA 178
Query: 255 LDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSSGDE 301
R ++ R D+ W+ E + S
Sbjct: 179 QQEYRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTA 225
>1xmt_A Putative acetyltransferase; structural genomics, protein structure
initiative, CESG, AT1G77540, center for eukaryotic
structural genomics; 1.15A {Arabidopsis thaliana} SCOP:
d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A* 2q4y_A*
Length = 103
Score = 27.8 bits (62), Expect = 1.5
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 193 EKMIKSVIEYARLRGIRVIP 212
+ + E+A I +IP
Sbjct: 55 SHLCVAAFEHASSHSISIIP 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 17/43 (39%)
Query: 35 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 77
+A+KK L L Y P+L++K
Sbjct: 20 QALKK-LQ----ASLK------------LYADDSAPALAIKAT 45
Score = 28.8 bits (63), Expect = 1.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 17/43 (39%)
Query: 142 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 184
+A+KK L L Y P+L++K
Sbjct: 20 QALKK-LQ----ASLK------------LYADDSAPALAIKAT 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.3
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 229 QIHCHCPHRVEGKTFVGPLDPTKN-----VTLDFVRDL-FTELGQRFPESYVHLGGDEVD 282
I H R+ +P K V ++ DL E + E + H GD+VD
Sbjct: 897 SILEHSGIRLIEPELFNGYNPEKKEMIQEVIVE--EDLEPFEASKETAEQFKHQHGDKVD 954
Query: 283 FFCWEQNPE 291
F + E
Sbjct: 955 IFEIPETGE 963
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
c.94.1.1
Length = 310
Score = 28.0 bits (62), Expect = 4.0
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 252 NVTLDFVRDLFTELGQRFPESYVHLGGDEVDF 283
NV+ D R+L+ + + F + GD V
Sbjct: 7 NVSYDPTRELYEQYNKAFSAHWKQETGDNVVI 38
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 27.9 bits (63), Expect = 4.3
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 136 RHYLPIKAIKKQLDIMSY-----------NKLNVLHWHLVDDQSFPY---ESKKFPSLSL 181
RHY+ + I+ L I SY + + H +D + P +
Sbjct: 63 RHYIDVGQIRDNLGIRSYMITSNGARVHDSDGQQIFAHNLDRDIAADLFEIVRNDPKIVT 122
Query: 182 KGAFGPDAIYTEKMIKSVIEYARLRGIRV 210
+ D Y + + + +
Sbjct: 123 -NVYREDEWYMNRHRPEEMRFFKEAVFNY 150
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein
binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Length = 89
Score = 26.1 bits (58), Expect = 5.0
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 250 TKNVTLDF-----VRDLFTELGQRFPESYVHLGGDE------VDFFCWEQNPEIKAFMSS 298
++ V +D V D L P + GD+ ++ + + ++
Sbjct: 17 SRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAA 76
Query: 299 GDEVDFF 305
GDE+ F
Sbjct: 77 GDELALF 83
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 27.8 bits (61), Expect = 5.6
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 137 HYLPIKAIKKQLDIMSYNKLNVL-HWHLVDDQSFP-YESKKFPSLSLKGAFGPDAIYTEK 194
+ + L M + N + W ++ +S P +++ + + G D
Sbjct: 40 YSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVT-------GIDNTLISD 92
Query: 195 MIKSVIEYARLRGIRVIP 212
M ++ + A+ I +
Sbjct: 93 M-RAYLHAAQRHNILIFF 109
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic;
2.68A {Leishmania infantum}
Length = 227
Score = 27.0 bits (60), Expect = 6.9
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 34 IKAIKKQLDIMSYNKLNVLH---WHLVDDQSFPYESKKFPSLSLKGAFG 79
+ I + + + WH + SF +P ++G+ G
Sbjct: 62 LDGINAVSSQLPFR--YQVATQDWHPENHCSFVTHGGPWPPHCVQGSAG 108
Score = 27.0 bits (60), Expect = 6.9
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 141 IKAIKKQLDIMSYNKLNVLH---WHLVDDQSFPYESKKFPSLSLKGAFG 186
+ I + + + WH + SF +P ++G+ G
Sbjct: 62 LDGINAVSSQLPFR--YQVATQDWHPENHCSFVTHGGPWPPHCVQGSAG 108
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus
cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Length = 358
Score = 27.2 bits (60), Expect = 7.0
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 37/150 (24%)
Query: 137 HYLPIKAIKKQLDIMSYNKLNVL----HWHLVDDQSFPYE---SKKFPSLSLKGAFGPDA 189
H L + + LD + N + ++ + P + L +
Sbjct: 39 HGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSL---- 94
Query: 190 IYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDP 249
+++ ++ YA G+R+I +D H L
Sbjct: 95 ----QVMDKIVAYAGQIGLRII--LD--------------RHRPDCS------GQSALWY 128
Query: 250 TKNVTLDFVRDLFTELGQRFPESYVHLGGD 279
T +V+ L QR+ + +G D
Sbjct: 129 TSSVSEATWISDLQALAQRYKGNPTVVGFD 158
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 27.3 bits (60), Expect = 7.1
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 256 DFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSS 298
FV + + FP + LGGD + W+ P +A +
Sbjct: 73 RFVGAIADRIE--FPREKILLGGDHLGPNPWKHLPADEAMAKA 113
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 27.4 bits (60), Expect = 7.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 180 SLKGAFGPDAIYTEKMIKSVIEYARLRGIRVI--PEIDTPGHT 220
A+GP ++ I S+ E A G++V P ++ T
Sbjct: 83 DPAIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTVNCRDGT 125
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea
jecorina}
Length = 340
Score = 27.3 bits (60), Expect = 7.5
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 23/76 (30%)
Query: 194 KMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNV 253
+++ G I +D H + + G +
Sbjct: 84 SKYDQLVQGCLSLGAYCI--VDI--HNYA-------------------RWNGGIIGQGGP 120
Query: 254 TLDFVRDLFTELGQRF 269
T L+++L ++
Sbjct: 121 TNAQFTSLWSQLASKY 136
>3txy_A Isochorismatase family protein family; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia thailandensis}
Length = 199
Score = 26.8 bits (60), Expect = 7.9
Identities = 8/69 (11%), Positives = 13/69 (18%), Gaps = 2/69 (2%)
Query: 183 GAFGPDAIYTEKMIKSVIEYARLRGIRVI--PEIDTPGHTDSMEPGMPQIHCHCPHRVEG 240
+ R R + VI P +++ E
Sbjct: 29 PMVPQSGGDVVAKTAELANAFRARKLPVIFVHTSYQPDGAVALKVKTDVPPSPPNLDPEW 88
Query: 241 KTFVGPLDP 249
F L
Sbjct: 89 SAFAPALGV 97
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 27.0 bits (59), Expect = 9.7
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 185 FGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC 234
F Y + +K + YA +GI+++ +T + E M + +
Sbjct: 409 FDFVTPYPDFDVKEIHRYAARKGIKMMMHHETSASVRNYERHMDKAYQFM 458
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide
inhibitor, TL-3 PEPS virus, hydrolase-hydrolase
inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine
leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A*
Length = 132
Score = 26.0 bits (57), Expect = 9.9
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 234 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELG--QRFPES 272
+V P P + RDL T+L F S
Sbjct: 81 ATGKVTHSFLHVPDCPYPLLG----RDLLTKLKAQIHFEGS 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.441
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,984,510
Number of extensions: 302976
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 63
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)