RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11379
(306 letters)
>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 362
Score = 193 bits (492), Expect = 4e-60
Identities = 100/173 (57%), Positives = 122/173 (70%), Gaps = 1/173 (0%)
Query: 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 184
FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYES FP L KG+
Sbjct: 1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGS 60
Query: 185 FGP-DAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTF 243
+ P IYT + +K VIEYARLRGIRV+ E DTPGHT S PG+P + C E
Sbjct: 61 YNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGT 120
Query: 244 VGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFM 296
GP++P+ N T +F+ F E+ FP+ Y+HLGGDEVDF CW+ NPEI+ FM
Sbjct: 121 FGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFM 173
Score = 109 bits (272), Expect = 5e-28
Identities = 50/82 (60%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 77
FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYES FP L KG+
Sbjct: 1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGS 60
Query: 78 FGP-DAIYTEKMIKKVGLGARK 98
+ P IYT + +K+V AR
Sbjct: 61 YNPVTHIYTAQDVKEVIEYARL 82
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 353
Score = 190 bits (483), Expect = 6e-59
Identities = 94/172 (54%), Positives = 119/172 (69%)
Query: 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 184
F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG+
Sbjct: 1 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 60
Query: 185 FGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFV 244
+ +YT ++ VIEYARLRGIRV+PE DTPGHT S G + C R
Sbjct: 61 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSF 120
Query: 245 GPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFM 296
GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+ FM
Sbjct: 121 GPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFM 172
Score = 111 bits (279), Expect = 4e-29
Identities = 44/75 (58%), Positives = 56/75 (74%)
Query: 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 77
F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG+
Sbjct: 1 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 60
Query: 78 FGPDAIYTEKMIKKV 92
+ +YT ++ V
Sbjct: 61 YSLSHVYTPNDVRMV 75
>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase
{Streptomyces plicatus [TaxId: 1922]}
Length = 356
Score = 169 bits (429), Expect = 9e-51
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 8/180 (4%)
Query: 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 184
+ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ + +P L+ G
Sbjct: 1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG 60
Query: 185 F-----GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC---PH 236
GP YT+ K ++ YA R + V+PEID PGHT++ +++C P
Sbjct: 61 STEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPL 120
Query: 237 RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFM 296
K L K+VT DFV D+ EL P Y+H+GGDE +
Sbjct: 121 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHSTPKADFVAFMKRV 180
Score = 106 bits (265), Expect = 5e-27
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 77
+ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ + +P L+ G
Sbjct: 1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG 60
Query: 78 F-----GPDAIYTEKMIKKV 92
GP YT+ K++
Sbjct: 61 STEVGGGPGGYYTKAEYKEI 80
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
(beta-N-acetylhexosaminidase) {Serratia marcescens
[TaxId: 615]}
Length = 443
Score = 165 bits (419), Expect = 1e-48
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 47/222 (21%)
Query: 125 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 184
FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+ G
Sbjct: 1 FPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGG 60
Query: 185 F--------------------GPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSME 224
++ + +I+YA+ R I VIPEID P H +
Sbjct: 61 QRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAV 120
Query: 225 PGMPQIHCHC----------------------PHRVEGKTFVGPLDPTKNVTLDFVRDLF 262
M + V+ L+P + + FV +
Sbjct: 121 VSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVI 180
Query: 263 TELGQRFPES-----YVHLGGDEVDFFCWEQNPEIKAFMSSG 299
E+ Q E+ H GGDE KA G
Sbjct: 181 GEIAQMHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPG 222
Score = 104 bits (260), Expect = 6e-26
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 18 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 77
FP+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+ G
Sbjct: 1 FPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGG 60
Query: 78 F-GPDAIYTEKMIKKVGLGA 96
D T ++ + G G
Sbjct: 61 QRCHDLSETTCLLPQYGQGP 80
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
actinomycetemcomitans [TaxId: 714]}
Length = 344
Score = 160 bits (404), Expect = 2e-47
Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 127 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG 186
GL++D +RH+ + IK +D +S + N LH H D +++ ES + G
Sbjct: 3 QTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQG 62
Query: 187 PDAI----------YTEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC-HCP 235
D I + + + + YA+ +GI +IPE+D+P H ++ + +
Sbjct: 63 KDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYL 122
Query: 236 HRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLGGDEVDFFCWEQNPEIK 293
++ + +D T ++ F++ L +E+ F ++ + H+GGDE + + I
Sbjct: 123 QGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSVESNHEFIT 182
Query: 294 AFMSSGDEVD 303
++
Sbjct: 183 YANKLSYFLE 192
Score = 99.5 bits (247), Expect = 1e-24
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 20 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG 79
GL++D +RH+ + IK +D +S + N LH H D +++ ES + G
Sbjct: 3 QTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQG 62
Query: 80 PDAIYTEKMIKKVGLGARKM 99
D IY K L R++
Sbjct: 63 KDGIYINPYTGKPFLSYRQL 82
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD
{Escherichia coli [TaxId: 562]}
Length = 81
Score = 28.8 bits (64), Expect = 0.19
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 258 VRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSSGDEVDFF 305
V L + + + L ++ + ++ GDEV FF
Sbjct: 28 VEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 29.4 bits (66), Expect = 0.50
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 256 DFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSSGDE 301
+FV + ++G F + LGGD + CW+Q A M E
Sbjct: 66 EFVFAIADKVG--FARERIILGGDHLGPNCWQQENVDAA-MEKSVE 108
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
typhimurium [TaxId: 90371]}
Length = 309
Score = 29.5 bits (65), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 252 NVTLDFVRDLFTELGQRFPESYVHLGGDEVDF 283
NV+ D R+L+ + + F + GD V
Sbjct: 7 NVSYDPTRELYEQYNKAFSAHWKQETGDNVVI 38
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 28.2 bits (62), Expect = 1.4
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 171 YESKKFPSLSLKGAFGPDAIYTEKMIKSVIEYARLRGIRVIPEIDTPGHTDS 222
Y K+P + G G D I + R G +V + S
Sbjct: 3 YTQTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVY-VTEVSQLDTS 53
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 95
Score = 26.2 bits (58), Expect = 2.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 193 EKMIKSVIEYARLRGIRVIP 212
+ + E+A I +IP
Sbjct: 51 SHLCVAAFEHASSHSISIIP 70
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 26.2 bits (56), Expect = 6.0
Identities = 5/113 (4%), Positives = 27/113 (23%), Gaps = 1/113 (0%)
Query: 185 FGPDAIY-TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTF 243
+ T + ++ R ++++ ++ +D + + +
Sbjct: 69 CKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIW 128
Query: 244 VGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFM 296
+ + + Y + N +++ +
Sbjct: 129 RPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDV 181
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 25.8 bits (55), Expect = 7.6
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 191 YTEKMIKSVIEYARLRGIRVIPEIDT---PGHTDSMEPGMPQIHCHCPHRVEGKTFVGPL 247
+ I G++V+ T P P + + R G
Sbjct: 48 LEWGWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRR--HY 105
Query: 248 DPTKNVTLDFVRDLFTELGQRF 269
+ V + R + T L +R+
Sbjct: 106 CFSSPVYREEARRIVTLLAERY 127
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 25.7 bits (55), Expect = 8.4
Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Query: 185 FGPDAIY-TEKMIKSVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHC-HCPHRVEGKT 242
Y T + S++ + R +R++ ++ +D + + P+R
Sbjct: 69 RQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFW 128
Query: 243 FVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMS 297
G + N F + + + Y+H + W+ + +
Sbjct: 129 RDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYA 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.441
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,242,918
Number of extensions: 59742
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 22
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)