BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11381
(738 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 356 bits (914), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 166/240 (69%), Positives = 193/240 (80%), Gaps = 1/240 (0%)
Query: 53 KLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGFSAR 112
K+C+TYPR +YVP A+ I++GSSKFRSKGR PVL+Y H+ +A ICRCSQPLSGFSAR
Sbjct: 154 KICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSAR 213
Query: 113 CLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIEN 172
CLEDE LL I + NP + +MYV+DTRP++NAMANRAAGKGYENE+ Y NI+F F GIEN
Sbjct: 214 CLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIEN 273
Query: 173 IHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAI-VEGVSVV 231
IHVMRSSL KL+E SVN F SGL+SSGWLRHIK +D A F+A+AI VE SV+
Sbjct: 274 IHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSGWLRHIKAVMDAAVFLAKAITVENASVL 333
Query: 232 VHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDPREA 291
VHCSDGWDRT QVCSL SL+LD YYRTIKGF LIEKDW+SFGHKF +RCG L GDP+E
Sbjct: 334 VHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDPKEV 393
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 33/139 (23%)
Query: 318 ILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSXXXXXXXX 377
IL HIAS+E+ L+T G PL+I+CK F +V F++PRER+C+DIY +L +LS
Sbjct: 48 ILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSK------- 100
Query: 378 XXXXXXXXXXVCKSSVIPTRPQRLLKIHIEELYCFTYT-STTESPKSYGWDFFSLEQEFK 436
+ E+LY F+Y +S + GW L +E+K
Sbjct: 101 -------------------------QAKYEDLYAFSYNPKQNDSERLQGWQLIDLAEEYK 135
Query: 437 RMQVPNDEWCLTNLNKNYE 455
RM VPN W L++ N++Y+
Sbjct: 136 RMGVPNSHWQLSDANRDYK 154
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 447 LTNLNKNYESGDLSENTYSLWGYMANRMEDYINPLYSPDAHP-DFIRPDLSPQNIRFWRG 505
L N K E L E TYSLW ++ + Y+NPLYS ++H + P+ N +FWR
Sbjct: 438 LGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRN 497
Query: 506 MFCRFE 511
M+ +F+
Sbjct: 498 MYHQFD 503
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 238 bits (608), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 123/244 (50%), Positives = 160/244 (65%), Gaps = 5/244 (2%)
Query: 50 EFAKLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGF 109
E +LCDTYP + VP + L + FRS+GR+PVL+++H +QA I RCSQP+ G
Sbjct: 235 ERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGV 294
Query: 110 SA-RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFF 168
S R EDE+ L I+ +N S+ +++ D RP +NA+AN+A G GYE+E+ Y+N + F
Sbjct: 295 SGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFL 354
Query: 169 GIENIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIVEG- 227
I NIHVMR SL KL E N + +LS L+S+ WL HIK+ L A IA + G
Sbjct: 355 DIHNIHVMRESLRKLKEIVYPNIEETH-WLSNLESTHWLEHIKLILAGALRIADKVESGK 413
Query: 228 VSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGD 287
SVVVH SDGWDRT Q+ SLA LMLD YYRTI+GF+ L+EK+WLSFGH+F R GH GD
Sbjct: 414 TSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGH--GD 471
Query: 288 PREA 291
A
Sbjct: 472 KNHA 475
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 447 LTNLNKNYESGDLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGM 506
L N + +L + T SLW Y+ +++ED+ NPLY ++ + P S +++ W G
Sbjct: 524 LCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSN-HVLYPVASMRHLELWVGY 582
Query: 507 FCRFENGVHPRE---NLADVLLATRDHSSSLDDHVKFLQKRI 545
+ R+ + P+E N LLA R + L V+ LQ+ I
Sbjct: 583 YIRWNPRMKPQEPIHNRYKELLAKR---AELQKKVEELQREI 621
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 409 LYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYESGD 458
L+ F Y P++ GW + E++R +PN+ W +T +N+ YE D
Sbjct: 195 LFAFEYKEVF--PEN-GWKLYDPLLEYRRQGIPNESWRITKINERYELCD 241
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 162/252 (64%), Gaps = 5/252 (1%)
Query: 42 SLRSVYPKEFAKLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICR 101
S R E +LCDTYP + VP + L + FRS+GR+PVL+++H +QA I R
Sbjct: 155 SWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITR 214
Query: 102 CSQPLSGFSA-RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFY 160
CSQP+ G S R EDE+ L I+ +N S+ +++ D RP +NA+AN+A G GYE+E+ Y
Sbjct: 215 CSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAY 274
Query: 161 ENIKFHFFGIENIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFI 220
+N + F I NIHVMR SL KL E N + +LS L+S+ WL HIK+ L A I
Sbjct: 275 QNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETH-WLSNLESTHWLEHIKLILAGALRI 333
Query: 221 AQAIVEG-VSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFID 279
A + G SVVVH SDGWDRT Q+ SLA LMLD YYRTI+GF+ L+EK+WLSFGH+F
Sbjct: 334 ADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQL 393
Query: 280 RCGHLVGDPREA 291
R GH GD A
Sbjct: 394 RVGH--GDKNHA 403
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 458 DLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGMFCRF 510
+L + T SLW Y+ +++ED+ NPLY ++ + P S +++ W G + R+
Sbjct: 463 NLPKRTVSLWSYINSQLEDFTNPLYGSYSN-HVLYPVASMRHLELWVGYYIRW 514
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 409 LYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYESGD 458
L+ F Y P++ GW + E++R +PN+ W +T +N+ YE D
Sbjct: 123 LFAFEYKEVF--PEN-GWKLYDPLLEYRRQGIPNESWRITKINERYELCD 169
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 670 AIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
A DW V+ +C +C F TRK+HC CG + C C S +P
Sbjct: 158 APDW---VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIP 202
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 675 PVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNC 708
PV ++ C C F R++HC CG ++C NC
Sbjct: 371 PVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNC 405
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 680 NQCQCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
N C C F R++HC CG VLC +C R+ +P
Sbjct: 25 NGCGCV--FTTTVRRHHCRNCGYVLCGDCSRHRAAIP 59
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 683 QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
+C F RK+HC CG V C C + LP +
Sbjct: 166 RCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKY 201
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 673 WKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
W + C C F R++HC +CG++ C C + P
Sbjct: 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP 107
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 673 WKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
W + C C F R++HC +CG++ C C + P
Sbjct: 3 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP 47
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 673 WKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQL 715
W P C C F R++HC CG V C C + +L
Sbjct: 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKL 57
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 683 QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
QC F RK+HC CG + C C + LP
Sbjct: 31 QCEKEFSISRRKHHCRNCGHIFCNTCSSNELALP 64
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 653 YECNGIEALLDEEINSIAIDWKPVVNINQCQCSTPFDHFTRKYHCFKCGDVLCLNCI 709
Y C A +DEE+ + + K V N P + K K GDV + C+
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 683 QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
QC F RK+HC CG + C C + LP +
Sbjct: 24 QCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,567,026
Number of Sequences: 62578
Number of extensions: 876062
Number of successful extensions: 1945
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 26
length of query: 738
length of database: 14,973,337
effective HSP length: 106
effective length of query: 632
effective length of database: 8,340,069
effective search space: 5270923608
effective search space used: 5270923608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)