Query psy11381
Match_columns 738
No_of_seqs 484 out of 1781
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:58:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1089|consensus 100.0 6E-120 1E-124 1005.0 21.0 422 23-554 136-565 (573)
2 KOG4471|consensus 100.0 8E-119 2E-123 983.3 22.8 405 24-541 165-578 (717)
3 PF06602 Myotub-related: Myotu 100.0 7.6E-93 1.6E-97 767.1 19.0 328 22-457 19-353 (353)
4 KOG1090|consensus 100.0 5.8E-54 1.3E-58 486.2 11.3 377 32-521 1003-1476(1732)
5 KOG1089|consensus 99.7 5.1E-17 1.1E-21 183.1 8.2 182 313-528 49-243 (573)
6 KOG4471|consensus 99.7 1.4E-16 3.1E-21 177.7 9.5 182 320-531 83-274 (717)
7 KOG1818|consensus 99.4 2.1E-14 4.5E-19 163.7 -0.9 100 607-723 105-210 (634)
8 PF01363 FYVE: FYVE zinc finge 99.3 7.5E-13 1.6E-17 111.8 0.8 46 671-716 1-47 (69)
9 KOG1819|consensus 99.2 7.6E-12 1.6E-16 137.6 7.0 55 669-723 891-947 (990)
10 smart00064 FYVE Protein presen 99.2 1E-11 2.3E-16 104.6 3.4 53 671-723 2-55 (68)
11 KOG1729|consensus 99.0 7.2E-11 1.6E-15 125.6 1.4 57 666-722 155-213 (288)
12 PTZ00303 phosphatidylinositol 99.0 2.4E-10 5.1E-15 130.9 3.8 56 668-723 448-510 (1374)
13 cd00065 FYVE FYVE domain; Zinc 98.6 1.3E-08 2.8E-13 82.8 2.4 40 679-718 2-42 (57)
14 KOG1841|consensus 98.6 6.9E-09 1.5E-13 123.4 0.8 53 666-718 544-597 (1287)
15 PF06602 Myotub-related: Myotu 98.6 5.8E-09 1.3E-13 114.3 -0.2 110 409-520 2-118 (353)
16 KOG1842|consensus 98.6 8E-09 1.7E-13 113.5 -0.2 50 662-711 163-213 (505)
17 KOG1843|consensus 97.7 1.6E-05 3.4E-10 87.5 2.6 53 665-717 146-200 (473)
18 KOG4424|consensus 97.1 0.00018 3.9E-09 82.3 1.5 46 670-717 408-455 (623)
19 KOG1409|consensus 96.6 0.00055 1.2E-08 74.5 0.3 49 668-719 274-334 (404)
20 KOG1811|consensus 96.0 0.001 2.2E-08 76.6 -1.6 56 668-723 311-372 (1141)
21 smart00404 PTPc_motif Protein 95.6 0.016 3.5E-07 50.7 4.4 31 227-257 39-69 (105)
22 smart00012 PTPc_DSPc Protein t 95.6 0.016 3.5E-07 50.7 4.4 31 227-257 39-69 (105)
23 KOG0230|consensus 94.8 0.018 4E-07 72.2 3.0 33 674-708 92-125 (1598)
24 KOG0230|consensus 93.5 0.034 7.3E-07 70.0 1.8 31 678-711 4-35 (1598)
25 cd00127 DSPc Dual specificity 92.8 0.2 4.3E-06 46.7 5.3 27 220-246 74-100 (139)
26 smart00195 DSPc Dual specifici 92.6 0.17 3.6E-06 47.6 4.7 27 220-246 71-97 (138)
27 PF13350 Y_phosphatase3: Tyros 92.6 0.16 3.4E-06 49.8 4.6 28 226-253 123-150 (164)
28 PF00782 DSPc: Dual specificit 91.7 0.15 3.3E-06 47.4 3.2 29 218-246 64-92 (133)
29 KOG1729|consensus 88.8 0.08 1.7E-06 57.3 -1.5 42 669-710 10-52 (288)
30 COG2365 Protein tyrosine/serin 86.8 1.3 2.9E-05 46.9 6.1 51 219-276 126-178 (249)
31 PF03162 Y_phosphatase2: Tyros 85.8 0.79 1.7E-05 45.7 3.7 43 226-276 90-133 (164)
32 cd00047 PTPc Protein tyrosine 85.1 1.4 3.1E-05 45.1 5.3 26 226-251 165-190 (231)
33 PTZ00242 protein tyrosine phos 83.8 1.2 2.7E-05 44.3 4.0 25 224-248 95-119 (166)
34 smart00194 PTPc Protein tyrosi 83.5 1.6 3.5E-05 45.6 4.9 25 227-251 193-217 (258)
35 PF02318 FYVE_2: FYVE-type zin 83.0 0.61 1.3E-05 44.0 1.4 33 679-711 54-88 (118)
36 PHA02742 protein tyrosine phos 82.8 1.3 2.8E-05 48.1 4.0 25 227-251 229-253 (303)
37 PF00102 Y_phosphatase: Protei 81.5 2 4.3E-05 43.1 4.6 26 226-251 169-194 (235)
38 PHA02740 protein tyrosine phos 81.1 2.6 5.6E-05 45.9 5.6 23 227-249 221-243 (298)
39 PF12578 3-PAP: Myotubularin-a 79.2 0.89 1.9E-05 44.4 1.1 40 475-514 60-100 (142)
40 COG2453 CDC14 Predicted protei 78.6 3.1 6.7E-05 41.8 4.8 36 211-246 89-124 (180)
41 PHA02746 protein tyrosine phos 77.8 3.6 7.9E-05 45.2 5.4 28 2-29 9-36 (323)
42 PF05706 CDKN3: Cyclin-depende 77.5 4.4 9.4E-05 41.0 5.4 37 218-254 124-160 (168)
43 PHA02747 protein tyrosine phos 77.3 3.9 8.5E-05 44.7 5.5 24 228-251 230-253 (312)
44 PTZ00393 protein tyrosine phos 73.9 5.6 0.00012 42.4 5.4 25 224-248 167-191 (241)
45 COG5599 PTP2 Protein tyrosine 73.5 1.8 3.9E-05 46.7 1.6 30 226-255 217-246 (302)
46 PHA02738 hypothetical protein; 72.4 2.7 5.8E-05 46.2 2.7 24 228-251 228-251 (320)
47 KOG0793|consensus 71.9 3 6.6E-05 49.9 3.1 44 209-252 908-952 (1004)
48 KOG1841|consensus 71.0 3.2 6.8E-05 52.0 3.1 36 668-705 646-682 (1287)
49 KOG0993|consensus 71.0 0.24 5.1E-06 55.5 -5.7 53 669-723 458-513 (542)
50 PRK12361 hypothetical protein; 66.7 7.7 0.00017 45.4 5.0 32 215-246 163-194 (547)
51 PRK15375 pathogenicity island 65.8 7.8 0.00017 45.4 4.7 33 230-263 469-505 (535)
52 TIGR01244 conserved hypothetic 61.6 11 0.00025 36.0 4.3 27 226-253 85-111 (135)
53 PF09538 FYDLN_acid: Protein o 60.8 4 8.7E-05 38.4 1.1 29 679-707 9-39 (108)
54 PRK00464 nrdR transcriptional 60.3 4.1 8.8E-05 40.6 1.1 26 681-706 2-40 (154)
55 KOG3576|consensus 59.3 5.3 0.00011 41.7 1.7 34 674-707 112-158 (267)
56 TIGR00622 ssl1 transcription f 58.2 7.7 0.00017 36.9 2.4 38 672-709 48-96 (112)
57 KOG1314|consensus 53.1 4.5 9.8E-05 45.1 0.0 33 668-702 75-113 (414)
58 KOG1716|consensus 50.3 20 0.00043 38.7 4.4 34 217-251 145-178 (285)
59 PF07975 C1_4: TFIIH C1-like d 49.8 2.9 6.4E-05 34.4 -1.5 27 682-708 2-35 (51)
60 KOG4275|consensus 47.7 3.4 7.3E-05 45.0 -1.9 34 677-710 42-76 (350)
61 TIGR02300 FYDLN_acid conserved 47.6 9.1 0.0002 37.2 1.1 27 679-705 9-37 (129)
62 KOG1718|consensus 45.2 21 0.00046 36.6 3.3 26 226-252 93-118 (198)
63 KOG0317|consensus 44.7 4.7 0.0001 43.8 -1.4 28 679-711 239-268 (293)
64 PF04273 DUF442: Putative phos 43.0 31 0.00067 32.4 3.9 31 220-251 78-109 (110)
65 KOG2283|consensus 40.9 9.5 0.00021 43.9 0.2 55 191-245 65-125 (434)
66 KOG0789|consensus 39.7 23 0.00051 39.2 3.0 23 226-248 298-320 (415)
67 PF14566 PTPlike_phytase: Inos 36.8 34 0.00074 33.4 3.3 27 225-251 122-148 (149)
68 PF01485 IBR: IBR domain; Int 35.8 26 0.00056 28.4 1.9 32 680-711 19-57 (64)
69 PF13717 zinc_ribbon_4: zinc-r 34.3 16 0.00036 27.7 0.5 24 681-704 4-35 (36)
70 smart00154 ZnF_AN1 AN1-like Zi 33.9 21 0.00046 27.6 1.0 23 684-708 4-26 (39)
71 KOG2836|consensus 33.8 34 0.00073 33.9 2.6 31 226-256 96-126 (173)
72 PF15581 Imm35: Immunity prote 32.8 30 0.00066 31.7 2.0 22 251-272 24-45 (93)
73 PF01927 Mut7-C: Mut7-C RNAse 32.3 33 0.00072 33.5 2.4 47 658-704 70-134 (147)
74 KOG0320|consensus 32.2 9 0.0002 39.2 -1.6 29 680-711 132-162 (187)
75 cd03067 PDI_b_PDIR_N PDIb fami 31.6 81 0.0018 30.0 4.6 44 211-254 34-111 (112)
76 KOG0792|consensus 29.7 43 0.00093 42.4 3.2 41 204-245 1034-1081(1144)
77 COG5574 PEX10 RING-finger-cont 27.9 15 0.00032 39.7 -1.0 17 695-711 228-244 (271)
78 KOG1655|consensus 27.6 1.4E+02 0.0029 31.4 5.8 49 505-554 3-51 (218)
79 PRK11595 DNA utilization prote 26.6 18 0.00039 37.7 -0.6 29 681-711 22-57 (227)
80 PF13719 zinc_ribbon_5: zinc-r 26.6 24 0.00051 26.9 0.2 24 681-704 4-35 (37)
81 KOG1717|consensus 25.3 1E+02 0.0022 33.9 4.6 48 203-251 226-274 (343)
82 KOG2433|consensus 25.3 36 0.00079 38.9 1.4 45 226-273 501-554 (577)
83 COG1645 Uncharacterized Zn-fin 24.3 35 0.00076 33.4 0.9 24 679-710 28-52 (131)
84 KOG1814|consensus 23.7 32 0.0007 39.3 0.7 41 670-711 360-403 (445)
85 PF04179 Init_tRNA_PT: Initiat 23.5 1.3E+02 0.0028 35.1 5.5 43 209-252 355-400 (451)
86 PF01529 zf-DHHC: DHHC palmito 23.4 34 0.00074 33.3 0.7 23 679-703 48-71 (174)
87 COG2126 RPL37A Ribosomal prote 23.3 38 0.00082 28.9 0.8 6 697-702 19-24 (61)
88 PF09954 DUF2188: Uncharacteri 23.2 63 0.0014 26.9 2.2 47 193-239 7-56 (62)
89 PRK14559 putative protein seri 22.9 44 0.00095 40.5 1.6 31 678-712 14-51 (645)
90 PHA02768 hypothetical protein; 22.8 36 0.00078 28.6 0.6 26 680-705 6-42 (55)
91 KOG2845|consensus 22.4 40 0.00087 39.4 1.1 23 678-706 156-182 (505)
92 KOG0741|consensus 22.3 1.7E+02 0.0036 35.3 5.9 82 167-248 470-559 (744)
93 PF13214 DUF4022: Protein of u 22.1 2.5E+02 0.0054 24.7 5.5 38 226-268 33-83 (83)
94 KOG2164|consensus 21.3 38 0.00083 39.7 0.7 33 679-715 186-219 (513)
95 TIGR01031 rpmF_bact ribosomal 21.0 47 0.001 27.7 1.0 26 673-702 19-47 (55)
96 KOG0791|consensus 20.4 1.1E+02 0.0024 34.7 4.0 57 195-251 249-311 (374)
97 PF15135 UPF0515: Uncharacteri 20.1 56 0.0012 35.3 1.5 31 674-704 127-165 (278)
No 1
>KOG1089|consensus
Probab=100.00 E-value=5.9e-120 Score=1005.01 Aligned_cols=422 Identities=46% Similarity=0.769 Sum_probs=396.6
Q ss_pred hhhccCcchh--hhhcccccCccccccccccccccCCCCcceeeccccChhhhhhhhhhccCCCCCeEEEeeCCCcceee
Q psy11381 23 KFKEIDVNAS--RETVVKKVNSLRSVYPKEFAKLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVIC 100 (738)
Q Consensus 23 k~k~id~~ae--R~~l~~k~nsWRvs~vN~~Y~lC~TYP~~lvVP~~isD~~L~~~a~fRs~gR~Pvltw~h~~n~a~i~ 100 (738)
+|+.+|+..| |+++.+....||++.+|++|++|+|||.+++||++++|+.|+++|+||++||||||||+|+.|+++|+
T Consensus 136 gw~~fd~~~ef~r~~~~~~~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~ 215 (573)
T KOG1089|consen 136 GWKMFDPESEFDRMGIRKGNSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALM 215 (573)
T ss_pred CceecchHhHHHHHhccCCCCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCccee
Confidence 5666665555 44443356789999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccCCC-CCHhhHHHHHHHHhcCCCCCceeEecCchhhHHHHHHhcCCCccccccccCcceeecCCcchHHHHHH
Q psy11381 101 RCSQPLSGFSA-RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIENIHVMRSS 179 (738)
Q Consensus 101 RssQPl~G~~~-r~~eDE~ll~~i~~~~p~~~~~~ivD~Rp~~nA~an~a~G~G~E~~~~Y~~~~~~fl~I~nIh~mr~S 179 (738)
||||||+|+.+ ||.+||+||++|.++++++..+|||||||++|||||+|+||||||+++|++++++|+||+|||+||+|
T Consensus 216 R~SqPL~g~~~~Rc~~DE~il~ai~k~~~~~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s 295 (573)
T KOG1089|consen 216 RSSQPLSGFIAKRCREDEKILEAILKANPNSKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSS 295 (573)
T ss_pred eecCCCcccccccchHHHHHHHHHHhhCcCccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHH
Confidence 99999999975 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCChhhhhccccccchHHHHHHHHHHHHHHHHHHH-cCCeEEEecCCCCCcchhHHHHHHhhhccchhh
Q psy11381 180 LAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRT 258 (738)
Q Consensus 180 ~~kL~~~~~~~~~~~~~~l~~le~s~WL~hI~~iL~~a~~ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyyRT 258 (738)
|+||+++|....+++++|++.||+||||+||+.+|++|++||++|. +|+|||||||||||||+||||||||||||||||
T Consensus 296 ~~kl~e~c~~~~~~~~~~ls~LE~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRT 375 (573)
T KOG1089|consen 296 LQKLLEVCNNFLPTMDKWLSLLESSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRT 375 (573)
T ss_pred HHHHHHHHhccCccHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhCchhhh
Confidence 9999999998999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCcCcccccCCCCCCchhhhhhhhhcccCCcccccCCCCCCCchhhhhhhhhhcccCCCCCCCCCe
Q psy11381 259 IKGFQALIEKDWLSFGHKFIDRCGHLVGDPREALIEKDWLSFGHKFTDRCGHLAGDPREILLMHIASIERGPLSTLGSPL 338 (738)
Q Consensus 259 i~GF~~LIEKeWlsfGH~F~~R~gh~~~~~~~~~~~~~~~~~~~~F~~r~g~~~~~~~E~wl~~i~~vEk~~~s~~gspi 338 (738)
|+|||+|||||||+|||||.+||||+.+. .++.+|. ||+
T Consensus 376 i~GFqsLIeKeWi~~GH~F~~Rc~hl~~~------------------------~~~~ke~-----------------SPv 414 (573)
T KOG1089|consen 376 IKGFQSLIEKEWISFGHKFLDRCGHLAYN------------------------DGDSKEE-----------------SPV 414 (573)
T ss_pred HHHHHHHHHHHHHHcCCcHHHhcCCcccc------------------------cCCCccc-----------------CcH
Confidence 99999999999999999988888887310 3455666 999
Q ss_pred eeeccccceEEEeccCcCchhHHHHHHhhhcCCChhhhhccCCCCCCCCCCCCCCCCCchhhhHHhhhhhhhcccCCCCC
Q psy11381 339 IIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTT 418 (738)
Q Consensus 339 ~i~Ck~F~~~~f~i~~q~~~~dv~~sl~~ls~p~~~~f~~~~~~yp~~~~~~~~~~EFne~~L~~l~~~~~~~f~~tf~~ 418 (738)
| .+|+|||||+..|+|+ +| ||||+||+.|++|+|+|+||||
T Consensus 415 F---~qFLDcvwQl~~QfP~----------------~F------------------EFne~fLi~L~~h~ys~qfGtF-- 455 (573)
T KOG1089|consen 415 F---LQFLDCVWQLLEQFPC----------------AF------------------EFNERFLIKLHEHAYSSQFGTF-- 455 (573)
T ss_pred H---HHHHHHHHHHHhhCCc----------------ce------------------ehhHHHHHHHHHhhHHhhhccc--
Confidence 9 9999999999999999 99 9999999999999999999999
Q ss_pred CCCCCCCCcccChHHHHHHcCCCCCCeeeecchhhhhhccccCCccccchhHhhccccccCCCCCCCCCCCcccccCCCC
Q psy11381 419 ESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYESGDLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQ 498 (738)
Q Consensus 419 ~~~~~~GW~~f~~~~Ey~R~g~~~~~Wrlt~~Nk~y~~~~~~~~t~Slw~~~~~~~~~f~Np~Y~p~~~~~~i~P~~~~~ 498 (738)
|+|++|+|....++.+|.|||+|+..++++|+||+|.|. ...++|.+.|+
T Consensus 456 ----------------------------l~NsekeR~e~~~~~kt~slW~~~~~~~~~f~Nply~~~--~~~~~~~l~P~ 505 (573)
T KOG1089|consen 456 ----------------------------LGNSEKERRELNLSEKTTSLWDYLLPRKEEFVNPLYDPR--YLVIWPILAPQ 505 (573)
T ss_pred ----------------------------cccCHHHHHHhcccccceehHHhHhhhhhhhcCcccccc--ccceeeccCcc
Confidence 999999999999999999999999999999999999998 57888888888
Q ss_pred c----eeeecccccccCCCCCCCccHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHhhh
Q psy11381 499 N----IRFWRGMFCRFENGVHPRENLADVLLATRDHSSSLDDHVKFLQKRIFSFKQSLSK 554 (738)
Q Consensus 499 ~----~~~W~~~~~r~~~~~~~~e~~~d~l~~~~~~~~~le~~v~~L~~~l~~~~~~~~~ 554 (738)
. ++||++||.||+++.+++++..+.++..+++.++|+.|+..++++..+++.+...
T Consensus 506 ~~~~~l~~W~~~y~r~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 565 (573)
T KOG1089|consen 506 TATLSLQVWSSLYERWDEGLSPRTPSTETIQLLMEREKELQPKVLSLRRSDAELKIESED 565 (573)
T ss_pred cccchhHHHHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 8 9999999999999999999999999999999999999999999999888766544
No 2
>KOG4471|consensus
Probab=100.00 E-value=8e-119 Score=983.31 Aligned_cols=405 Identities=41% Similarity=0.682 Sum_probs=375.4
Q ss_pred hhccCc--chh--hhhcccccCccccccccccccccCCCCcceeeccccChhhhhhhhhhccCCCCCeEEEeeCCCccee
Q psy11381 24 FKEIDV--NAS--RETVVKKVNSLRSVYPKEFAKLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVI 99 (738)
Q Consensus 24 ~k~id~--~ae--R~~l~~k~nsWRvs~vN~~Y~lC~TYP~~lvVP~~isD~~L~~~a~fRs~gR~Pvltw~h~~n~a~i 99 (738)
|+.-+| .+| |+++..+ +||||.+|++|++|+|||..|+||++|+|++|.++|.||+++|+|||+|.||.+||+|
T Consensus 165 ~~l~~P~~~~E~~r~g~~n~--~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvlsw~Hp~sgAvI 242 (717)
T KOG4471|consen 165 WKLYDPMFKNEYRRQGLPNE--SWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLSWRHPESGAVI 242 (717)
T ss_pred ccccChhhHhHHHhcCCChh--heeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEEEEcCCCCceE
Confidence 777777 555 7777654 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCccCCC-CCHhhHHHHHHHHhcCCCC---CceeEecCchhhHHHHHHhcCCCccccccccCcceeecCCcchHH
Q psy11381 100 CRCSQPLSGFSA-RCLEDEQLLNCILRTNPGS---NFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIENIHV 175 (738)
Q Consensus 100 ~RssQPl~G~~~-r~~eDE~ll~~i~~~~p~~---~~~~ivD~Rp~~nA~an~a~G~G~E~~~~Y~~~~~~fl~I~nIh~ 175 (738)
+|||||++|..+ |+.+||+||++|..+++.. ++++|+||||..||+||+|+|||||++++|+|+++.|+||+|||+
T Consensus 243 aRcSQPlVG~~g~Rn~~DEkll~~i~~a~A~~~e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~ 322 (717)
T KOG4471|consen 243 ARCSQPLVGWSGKRNKDDEKLLQAIADANAQDGERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHV 322 (717)
T ss_pred EecCCcccchhcccccchHHHHHHHHHhcccccccceEEEEecccchhhhhccccCCCccChhccccceEEEeecchhHH
Confidence 999999999985 9999999999999999765 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhhhhccccccchHHHHHHHHHHHHHHHHHHH-cCCeEEEecCCCCCcchhHHHHHHhhhcc
Q psy11381 176 MRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLMLDP 254 (738)
Q Consensus 176 mr~S~~kL~~~~~~~~~~~~~~l~~le~s~WL~hI~~iL~~a~~ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLlLDP 254 (738)
||+||.||.++|. +++++++|++.||+|+||+||+.||.+|..||+.|+ +++|||||||||||||+||+|||||||||
T Consensus 323 mR~s~~~~k~~~~-~~~d~s~wlS~Le~T~WL~Hi~~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDp 401 (717)
T KOG4471|consen 323 MRESLRKLKEICY-PSPDESNWLSALESTHWLEHISSLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDP 401 (717)
T ss_pred HHHHHHhHHHhhc-CCCCchhHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhch
Confidence 9999999999994 678999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhhcCcCcccccCCCCCCchhhhhhhhhcccCCcccccCCCCCCCchhhhhhhhhhcccCCCCCC
Q psy11381 255 YYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDPREALIEKDWLSFGHKFTDRCGHLAGDPREILLMHIASIERGPLSTL 334 (738)
Q Consensus 255 yyRTi~GF~~LIEKeWlsfGH~F~~R~gh~~~~~~~~~~~~~~~~~~~~F~~r~g~~~~~~~E~wl~~i~~vEk~~~s~~ 334 (738)
|||||+|||+|||||||+|||||++|+||...+ | +..+
T Consensus 402 YYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns----------------------~---~~nd----------------- 439 (717)
T KOG4471|consen 402 YYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNS----------------------H---GDND----------------- 439 (717)
T ss_pred hhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCc----------------------c---cccc-----------------
Confidence 999999999999999999999988888886311 1 1111
Q ss_pred CCCeeeeccccceEEEeccCcCchhHHHHHHhhhcCCChhhhhccCCCCCCCCCCCCCCCCCchhhhHHhhhhhhhcccC
Q psy11381 335 GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTY 414 (738)
Q Consensus 335 gspi~i~Ck~F~~~~f~i~~q~~~~dv~~sl~~ls~p~~~~f~~~~~~yp~~~~~~~~~~EFne~~L~~l~~~~~~~f~~ 414 (738)
.+||| +||+|||||+++|||| +| ||||.||+.|++|+|+|.||
T Consensus 440 rsPVF---LQwlDcV~Ql~rqfP~----------------aF------------------EFne~fLi~i~dh~ySClFG 482 (717)
T KOG4471|consen 440 RSPVF---LQWLDCVWQLMRQFPC----------------AF------------------EFNEAFLIKIVDHLYSCLFG 482 (717)
T ss_pred cCchh---HHHHHHHHHHHHhCCc----------------cc------------------ccCHHHHHHHHHHHHHhhhh
Confidence 28999 9999999999999999 99 99999999999999999999
Q ss_pred CCCCCCCCCCCCcccChHHHHHHcCCCCCCeeeecchhhhhhccccCCccccchhHhhccccccCCCCCCCCCCCccccc
Q psy11381 415 TSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYESGDLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPD 494 (738)
Q Consensus 415 tf~~~~~~~~GW~~f~~~~Ey~R~g~~~~~Wrlt~~Nk~y~~~~~~~~t~Slw~~~~~~~~~f~Np~Y~p~~~~~~i~P~ 494 (738)
|| |+|++|+|+.|+++++|.|||+|+++...+|.||+|.|.. ..+++|.
T Consensus 483 TF------------------------------LcN~ekeR~~~~i~~~t~slWs~l~s~~~~f~Np~y~~~s-~~vL~Pv 531 (717)
T KOG4471|consen 483 TF------------------------------LCNSEKEREKEDITERTGSLWSYLNSSLSNFCNPFYDPSS-NGVLYPV 531 (717)
T ss_pred hh------------------------------hcCCHHHHhhcCcccchhhHHHHHhhcchhhcCcccCchh-cccccch
Confidence 99 9999999999999999999999999999999999999976 4899999
Q ss_pred CCCCceeeecccccccCCCCCCCccHHHHHHHHHhhhhchHHHHHHH
Q psy11381 495 LSPQNIRFWRGMFCRFENGVHPRENLADVLLATRDHSSSLDDHVKFL 541 (738)
Q Consensus 495 ~~~~~~~~W~~~~~r~~~~~~~~e~~~d~l~~~~~~~~~le~~v~~L 541 (738)
.+...+.+|.++|.||+.++.|.++..+..+.......++++++.+|
T Consensus 532 as~r~l~LW~~~ylrw~~~~~~~~~~~q~~~~~v~~~~e~~k~~~el 578 (717)
T KOG4471|consen 532 ASVRALELWVQYYLRWNPPMEPQEPGCQRYAELVALSDELKKKVREL 578 (717)
T ss_pred HhhhchhhceeeeeccCCCCCCCCccchhhhccccchhhhhhHHHHH
Confidence 99999999999999999999999998777666666666665443333
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=7.6e-93 Score=767.14 Aligned_cols=328 Identities=44% Similarity=0.687 Sum_probs=258.1
Q ss_pred HhhhccCcchhhhhcccccCc-cccccccccccccCCCCcceeeccccChhhhhhhhhhccCCCCCeEEEeeCCCcceee
Q psy11381 22 EKFKEIDVNASRETVVKKVNS-LRSVYPKEFAKLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVIC 100 (738)
Q Consensus 22 ~k~k~id~~aeR~~l~~k~ns-WRvs~vN~~Y~lC~TYP~~lvVP~~isD~~L~~~a~fRs~gR~Pvltw~h~~n~a~i~ 100 (738)
++|+..|+..|..++.....+ ||++.+|++|++|+|||..+|||++++|++|.++|+||++||||||||+|+.|||+|+
T Consensus 19 ~~~~~~d~~~E~~R~g~~~~~~Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~~~R~Pv~~W~~~~~~a~L~ 98 (353)
T PF06602_consen 19 NGWKIYDWEREFERLGLPSDSSWRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRSKGRFPVLSWRHPENGAVLL 98 (353)
T ss_dssp -HHCT--HHHHHHHTT-SCSS-EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBGGG---EEEEE-TTT--EEE
T ss_pred CCccccCHHHHHHHhCCCCCCCeeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhccCCccceEEEeecCCCeEEE
Confidence 567777776663333323333 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccCC-CCCHhhHHHHHHHH---hcCCCCCceeEecCchhhHHHHHHhcCCCccccccccCcceeecCCcchHHH
Q psy11381 101 RCSQPLSGFS-ARCLEDEQLLNCIL---RTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIENIHVM 176 (738)
Q Consensus 101 RssQPl~G~~-~r~~eDE~ll~~i~---~~~p~~~~~~ivD~Rp~~nA~an~a~G~G~E~~~~Y~~~~~~fl~I~nIh~m 176 (738)
|||||++|+. .||.+||+||.++. .+++..+.++|+|+||++||+||+++|||+|++++|++|+++|++|+|||+|
T Consensus 99 Rssqp~~g~~~~r~~~De~ll~~~i~~~~~~~~~~~~~i~D~R~~~~a~~n~~~G~G~E~~~~Y~~~~i~fl~i~nih~v 178 (353)
T PF06602_consen 99 RSSQPLVGLSNSRSKEDEKLLQAAISSSKSNPSKSKLVIVDARPKLNALANRAKGGGYENESNYPNCEIIFLNIPNIHSV 178 (353)
T ss_dssp EEE-B--TTTT---HHHHHHH-HHH--HHHSTT-SSEEEEE-SSCHHHHHHHHTT-S---TTTSTTEEEEE-----HHHH
T ss_pred EeccccccccccCchhhHHHHHHHHhhcccccccCceEEEcchhhhhhhhhhhhccCCccccccccceEEeeecCcHHHH
Confidence 9999999996 69999999995544 5667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-ccCCCChhhhhccccccchHHHHHHHHHHHHHHHHHHH-cCCeEEEecCCCCCcchhHHHHHHhhhcc
Q psy11381 177 RSSLAKLIETC-EANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLMLDP 254 (738)
Q Consensus 177 r~S~~kL~~~~-~~~~~~~~~~l~~le~s~WL~hI~~iL~~a~~ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLlLDP 254 (738)
|+||.||.++| .....+..+|++.|++|+||+||+.+|++|..||++|. +|.+|||||+||||||+||||||||||||
T Consensus 179 r~s~~kl~~~~~~~~~~~~~~~~~~le~s~Wl~~v~~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql~lDp 258 (353)
T PF06602_consen 179 RDSFQKLRELCSNTNSDNDDSWLSSLESSNWLDHVRSILSGASRIADLLHDEGSSVLVHCSDGWDRTSQLSSLAQLLLDP 258 (353)
T ss_dssp HHHHHHHHHHH-SSSS--HHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTT--EEEEECTTSSSHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHhcccccCCchhhhhccccCChHHHHHHHHHHHHHHHHHhhccCceEEEEcCCCCcccHHHHHHHHHHHHh
Confidence 99999999999 55566788999999999999999999999999999996 99999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhhcCcCcccccCCCCCCchhhhhhhhhcccCCcccccCCCCCCCchhhhhhhhhhcccCCCCCC
Q psy11381 255 YYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDPREALIEKDWLSFGHKFTDRCGHLAGDPREILLMHIASIERGPLSTL 334 (738)
Q Consensus 255 yyRTi~GF~~LIEKeWlsfGH~F~~R~gh~~~~~~~~~~~~~~~~~~~~F~~r~g~~~~~~~E~wl~~i~~vEk~~~s~~ 334 (738)
|||||+||++||||||++|||||.+|+||.... ....+|.
T Consensus 259 yyRTi~GF~~LIeKeW~~fGH~F~~R~~~~~~~------------------------~~~~~~~---------------- 298 (353)
T PF06602_consen 259 YYRTIEGFQVLIEKEWISFGHPFADRCGHGSSS------------------------SSSSSER---------------- 298 (353)
T ss_dssp GGGSHHHHHHHHHHHTTTTT--HHHHHTTT--S------------------------STTGCC-----------------
T ss_pred hhhhHHHHHHHHHHHHHhcCcchhhhcCCcccc------------------------ccccccc----------------
Confidence 999999999999999999999988888885100 1122332
Q ss_pred CCCeeeeccccceEEEeccCcCchhHHHHHHhhhcCCChhhhhccCCCCCCCCCCCCCCCCCchhhhHHhhhhhhhcccC
Q psy11381 335 GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTY 414 (738)
Q Consensus 335 gspi~i~Ck~F~~~~f~i~~q~~~~dv~~sl~~ls~p~~~~f~~~~~~yp~~~~~~~~~~EFne~~L~~l~~~~~~~f~~ 414 (738)
+||| .+|+||||||.+|+|. +| ||||.||++|++|+|+|.||
T Consensus 299 -sPvF---l~FLDcV~ql~~q~P~----------------~F------------------EFne~~L~~l~~~~~s~~fg 340 (353)
T PF06602_consen 299 -SPVF---LQFLDCVWQLLRQFPT----------------AF------------------EFNESLLIFLADHSYSGRFG 340 (353)
T ss_dssp ---HH---HHHHHHHHHHHHHSTT----------------T-------------------SB-HHHHHHHHHHHCCTSST
T ss_pred -ccch---hHHHHHHHHHHHhCCC----------------ce------------------ecCHHHHHHHHHHHhcCCCC
Confidence 8999 9999999999999999 99 99999999999999999999
Q ss_pred CCCCCCCCCCCCcccChHHHHHHcCCCCCCeeeecchhhhhhc
Q psy11381 415 TSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYESG 457 (738)
Q Consensus 415 tf~~~~~~~~GW~~f~~~~Ey~R~g~~~~~Wrlt~~Nk~y~~~ 457 (738)
|| |+|++++|..|
T Consensus 341 tF------------------------------l~n~e~eR~~~ 353 (353)
T PF06602_consen 341 TF------------------------------LFNSEKEREEC 353 (353)
T ss_dssp TT-------------------------------SSSHHHHHH-
T ss_pred cc------------------------------ccCCHHHhccC
Confidence 99 99999999876
No 4
>KOG1090|consensus
Probab=100.00 E-value=5.8e-54 Score=486.17 Aligned_cols=377 Identities=28% Similarity=0.432 Sum_probs=301.0
Q ss_pred hhhhcccccCccccccccccccccCCCCcceeeccccChhhhhhhhhhccCCCCCeEEEeeCCCcceeeeccCCCc----
Q psy11381 32 SRETVVKKVNSLRSVYPKEFAKLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLS---- 107 (738)
Q Consensus 32 eR~~l~~k~nsWRvs~vN~~Y~lC~TYP~~lvVP~~isD~~L~~~a~fRs~gR~Pvltw~h~~n~a~i~RssQPl~---- 107 (738)
+|++...++..||.+-.|.+|.+|+|||..+|||..++|+.|.++++...++||||++|.| .|||.|+|++||-+
T Consensus 1003 ~rl~ers~i~d~~rlg~N~~YaiCrSYPg~~IvP~~~~d~al~~v~rcf~~~R~Pvv~Wr~-~ngAlLvR~g~~~sk~vv 1081 (1732)
T KOG1090|consen 1003 SRLGERSKIVDLRRLGSNLDYAICRSYPGLLIVPQEVQDNALQKVSRCFVQNRLPVVVWRN-ENGALLVRAGAFTSKDVV 1081 (1732)
T ss_pred HHHHHHHHHHHHHHhccCccchhhcCCCceEeccccccHHHHHHHHHHHhcccccceeeec-CCcceEEecCCCccccHH
Confidence 3677777788899999999999999999999999999999999999999999999999999 89999999999842
Q ss_pred c-----------CC---CCCHhhHHHHHHHHhcCCCCCc----------------------------------eeEecC-
Q psy11381 108 G-----------FS---ARCLEDEQLLNCILRTNPGSNF----------------------------------MYVVDT- 138 (738)
Q Consensus 108 G-----------~~---~r~~eDE~ll~~i~~~~p~~~~----------------------------------~~ivD~- 138 (738)
| .+ +.+.|.|++|+|+..++|.... .-+-|-
T Consensus 1082 g~lK~~~~~s~nas~~~ss~~eqekyl~a~vsSmp~~~~~sg~n~~~~s~~~hm~s~~k~~~s~~~~rs~~l~td~~d~~ 1161 (1732)
T KOG1090|consen 1082 GKLKAQNAPSPNASQLDSSSLEQEKYLQAVVSSMPEYADASGRNALIGSSSAHMGSHAKLSNSSQRARSYALPTDYADKF 1161 (1732)
T ss_pred hhhccccCCCCCcccccccchhHHHHHHHHHhcChhhhhhhccchhhcchhhhcccccccccchhhhhhccCCccccccc
Confidence 2 11 3578999999999988763100 001110
Q ss_pred --------------------ch---hhHHHHHHhcCCCccccccccCcceeecCCcchHHHHHHHHHHHHHhcc----CC
Q psy11381 139 --------------------RP---RINAMANRAAGKGYENENFYENIKFHFFGIENIHVMRSSLAKLIETCEA----NS 191 (738)
Q Consensus 139 --------------------Rp---~~nA~an~a~G~G~E~~~~Y~~~~~~fl~I~nIh~mr~S~~kL~~~~~~----~~ 191 (738)
|+ .+-+++.++.|+ -+++--.+|+++.+....+..+|.||+||+.+|.. ..
T Consensus 1162 ~~~~~g~~~t~ng~p~~p~~r~~r~aLYiLgeK~q~k--~~~~id~~ae~IpV~~~e~rq~r~sfkkl~kaC~p~~~~~e 1239 (1732)
T KOG1090|consen 1162 STFNDGCTLTQNGAPPFPTTRIRRKALYILGEKAQLK--VRIDIDQQAELIPVEVFEERQVRASFKKLLKACVPGCPAAE 1239 (1732)
T ss_pred ccccCCCcccccCCCCCCCcchhhhhhhhccchhccc--ccCChhhccceeeeechhHHHHHHHHHHHHHHhCCCCccCC
Confidence 11 233445555555 44555578889888889999999999999999954 34
Q ss_pred CChhhhhccccccchHHHHHHHHHHHHHHHHHHH-cCCeEEEecCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhh
Q psy11381 192 PSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDW 270 (738)
Q Consensus 192 ~~~~~~l~~le~s~WL~hI~~iL~~a~~ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyyRTi~GF~~LIEKeW 270 (738)
++-.+|+..+|.|.||+.|+.+|+.+..|+++|+ .++||+|--.||||-|+||+||+|||+||||||++||++|+||||
T Consensus 1240 ~~~~SFl~s~e~S~WlqqIskllqlS~~VV~Lldl~~SSV~v~LEdG~dITtqlsSl~QLlsDPyYRtldGFrvLVEKEW 1319 (1732)
T KOG1090|consen 1240 PSPASFLESLEDSEWLQQISKLLQLSVLVVELLDLSNSSVLVGLEDGWDITTQLSSLSQLLSDPYYRTLDGFRVLVEKEW 1319 (1732)
T ss_pred CCHHHHHHHHhhcchHHHHHHHHhhhhhhhhhhhccCCeEEEEeccCchhhhhhhhhhhhcCChhhhcccchhhhhhhhh
Confidence 5668999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcCcCcccccCCCCCCchhhhhhhhhcccCCcccccCCCCCCCchhhhhhhhhhcccCCCCCCCCCeeeeccccceEEE
Q psy11381 271 LSFGHKFIDRCGHLVGDPREALIEKDWLSFGHKFTDRCGHLAGDPREILLMHIASIERGPLSTLGSPLIIRCKTFLSVTF 350 (738)
Q Consensus 271 lsfGH~F~~R~gh~~~~~~~~~~~~~~~~~~~~F~~r~g~~~~~~~E~wl~~i~~vEk~~~s~~gspi~i~Ck~F~~~~f 350 (738)
|+|||.| +|.. + ..+|.| .+|+|||+
T Consensus 1320 LaFGHrF-Hr~~----------------------------------~----------------~fsPsF---lqFLDcVh 1345 (1732)
T KOG1090|consen 1320 LAFGHRF-HRDT----------------------------------E----------------TFSPSF---LQFLDCVH 1345 (1732)
T ss_pred hhhcchh-cccc----------------------------------c----------------ccCchH---HHHHHHHH
Confidence 9999995 3321 1 127999 99999999
Q ss_pred eccCcCchhHHHHHHhhhcCCChhhhhccCCCCCCCCCCCCCCCCCchhhhHHhhhhhhhcccCCCCCCCCCCCCCcccC
Q psy11381 351 VIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFS 430 (738)
Q Consensus 351 ~i~~q~~~~dv~~sl~~ls~p~~~~f~~~~~~yp~~~~~~~~~~EFne~~L~~l~~~~~~~f~~tf~~~~~~~~GW~~f~ 430 (738)
||.+|+|. +| ||+..||.+|+||..+|.|-||.. |
T Consensus 1346 Qi~~QfPm----------------aF------------------EFs~FYl~FLaYHsvs~rFRTFl~-----------D 1380 (1732)
T KOG1090|consen 1346 QISQQFPM----------------AF------------------EFSYFYLSFLAYHSVSGRFRTFLL-----------D 1380 (1732)
T ss_pred HHHHhccc----------------hh------------------hhHHHHHHHHhhhccchhhhhhhc-----------c
Confidence 99999999 99 999999999999999999999932 2
Q ss_pred hHHHHHHcCCCCCCeeeecchhhh----hhccccCCccccchhHhh---ccccccCCCCCCCCCCCcccccCCCCceeee
Q psy11381 431 LEQEFKRMQVPNDEWCLTNLNKNY----ESGDLSENTYSLWGYMAN---RMEDYINPLYSPDAHPDFIRPDLSPQNIRFW 503 (738)
Q Consensus 431 ~~~Ey~R~g~~~~~Wrlt~~Nk~y----~~~~~~~~t~Slw~~~~~---~~~~f~Np~Y~p~~~~~~i~P~~~~~~~~~W 503 (738)
-|++|...+ ++.++ .-....-.|.|||.|+.. +..-|-|-+|.|.. .+.+.|......+..|
T Consensus 1381 --ce~eR~esg--------~~~~ek~er~~~p~nr~~~svweyI~r~~k~Tp~FyN~lYa~~~-s~ilrP~snV~~l~~W 1449 (1732)
T KOG1090|consen 1381 --CEEERIESG--------LLYEEKGERRGQPLNRATISVWEYIDRLSKRTPAFYNYLYAPED-SEILRPYSNVSNLKVW 1449 (1732)
T ss_pred --ccHHhhhhh--------hhHHhhccccCCCcccccchHHHHHHHhcccChhHHHHhhCcCC-cccccccCCcccccee
Confidence 233332221 11111 111122357899999865 46789999999974 5789999999999999
Q ss_pred ccc---------ccccCCCCCCCccHH
Q psy11381 504 RGM---------FCRFENGVHPRENLA 521 (738)
Q Consensus 504 ~~~---------~~r~~~~~~~~e~~~ 521 (738)
-=+ =--|+...+|.|...
T Consensus 1450 ~fytee~La~G~PYD~E~a~~~~e~~~ 1476 (1732)
T KOG1090|consen 1450 DFYTEEHLAYGPPYDWELAQGPPEPVE 1476 (1732)
T ss_pred ccchHHHhccCCCcCcccccCCCCCCc
Confidence 522 123566666666544
No 5
>KOG1089|consensus
Probab=99.68 E-value=5.1e-17 Score=183.06 Aligned_cols=182 Identities=24% Similarity=0.488 Sum_probs=154.3
Q ss_pred CCchhhhhhh--hhhcccCCCC----CCCCCeeeeccccceEEEeccCcCchhHHHHHHhhhcCCChhhhhccCCCCCCC
Q psy11381 313 GDPREILLMH--IASIERGPLS----TLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEP 386 (738)
Q Consensus 313 ~~~~E~wl~~--i~~vEk~~~s----~~gspi~i~Ck~F~~~~f~i~~q~~~~dv~~sl~~ls~p~~~~f~~~~~~yp~~ 386 (738)
...+|+|++| |++|||.|.+ ..|+||+++||+|+.+.|.|.++..|.+||.+|.+|+.+.+..
T Consensus 49 ~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~~~~~i~~~~e~~~v~~s~~~ls~~~~~~----------- 117 (573)
T KOG1089|consen 49 ANSKELWLLHDNIDSVEKDPSTFKNSTSGGPITLKCKDFRVISFLIPDDLECRDVYSSIENLSNIDSIL----------- 117 (573)
T ss_pred ccchhhccccchHhhhccCcceeeccccCCchhhhhhcceEEEEeccchHHHHHHHHHHHHhcccCccc-----------
Confidence 3578999886 9999999987 7899999999999999999999999999999999999997531
Q ss_pred CCCCCCCCCCchhhhHHhhhhhhhcccCCCCCCC-CCCCCCcccChHHHHHHcCC--CCCCeeeecchhhhhhccccCCc
Q psy11381 387 PVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTES-PKSYGWDFFSLEQEFKRMQV--PNDEWCLTNLNKNYESGDLSENT 463 (738)
Q Consensus 387 ~~~~~~~~EFne~~L~~l~~~~~~~f~~tf~~~~-~~~~GW~~f~~~~Ey~R~g~--~~~~Wrlt~~Nk~y~~~~~~~~t 463 (738)
.+|+|+|+++... ....||++|+++.||+|||+ ++..||++++|.+|++|.+||..
T Consensus 118 ---------------------~ly~f~y~~~~~~~~~~~gw~~fd~~~ef~r~~~~~~~~~w~~ssvNe~y~vC~tyP~~ 176 (573)
T KOG1089|consen 118 ---------------------QLYAFFYAPNFQNLEDPSGWKMFDPESEFDRMGIRKGNSHWRISSVNENYEVCPTYPEK 176 (573)
T ss_pred ---------------------cccccccCCcccccccccCceecchHhHHHHHhccCCCCCceEEecCCCeeeccCCCce
Confidence 1689999985433 22349999999999999999 99999999999999999999987
Q ss_pred cccch----hHhhccccccCCCCCCCCCCCcccccCCCCceeeecccccccCCCCCCCccHHHHHHHHH
Q psy11381 464 YSLWG----YMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGMFCRFENGVHPRENLADVLLATR 528 (738)
Q Consensus 464 ~Slw~----~~~~~~~~f~Np~Y~p~~~~~~i~P~~~~~~~~~W~~~~~r~~~~~~~~e~~~d~l~~~~ 528 (738)
.-|.. ..+.....|+..-+.|+ ..|.+-......+|.-+.+-+-..+++..+|-+.+.+..+.
T Consensus 177 l~VPksitd~~l~~~~~fRs~gR~Pv--l~y~h~~n~aal~R~SqPL~g~~~~Rc~~DE~il~ai~k~~ 243 (573)
T KOG1089|consen 177 LIVPKSITDEDLKKSAKFRSGGRFPV--LSYSHKENGAALMRSSQPLSGFIAKRCREDEKILEAILKAN 243 (573)
T ss_pred eEecCCCchHhhhccchhccCCccce--EEEEeccCCcceeeecCCCcccccccchHHHHHHHHHHhhC
Confidence 66655 45556788999999998 67777767777888888998888888888888877665554
No 6
>KOG4471|consensus
Probab=99.66 E-value=1.4e-16 Score=177.72 Aligned_cols=182 Identities=18% Similarity=0.277 Sum_probs=148.3
Q ss_pred hhhhhhcccCCCCC---CCCCeeeeccccceEEEeccCcCchh-HHHHHHhhhcCCChhhhhccCCCCCCCCCCCCCCCC
Q psy11381 320 LMHIASIERGPLST---LGSPLIIRCKTFLSVTFVIPRERECY-DIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIP 395 (738)
Q Consensus 320 l~~i~~vEk~~~s~---~gspi~i~Ck~F~~~~f~i~~q~~~~-dv~~sl~~ls~p~~~~f~~~~~~yp~~~~~~~~~~E 395 (738)
|..|++|||...-+ ....|.|.|||.+.++|.+..+..|+ ++++.|.+.++|....- ++|-
T Consensus 83 Lg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~~~~p~~~~~---------------~LFa 147 (717)
T KOG4471|consen 83 LGVIERVEKRGGATSGENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERLNRAAFPPAKSE---------------DLFA 147 (717)
T ss_pred hhhhhhhhhcCccccCCcceeEEEEeccccceeeecCcccccHHHHHHHHHHhcCCcccch---------------hhhh
Confidence 44599999864322 23457799999999999999999996 99999999998874311 0111
Q ss_pred CchhhhHHhhhhhhhcccCCCCCCCCCCCCCcccCh--HHHHHHcCCCCCCeeeecchhhhhhccccCCcc----ccchh
Q psy11381 396 TRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSL--EQEFKRMQVPNDEWCLTNLNKNYESGDLSENTY----SLWGY 469 (738)
Q Consensus 396 Fne~~L~~l~~~~~~~f~~tf~~~~~~~~GW~~f~~--~~Ey~R~g~~~~~Wrlt~~Nk~y~~~~~~~~t~----Slw~~ 469 (738)
| .|++.|.. .......+|++|+| .+||+|||+|++.||||++|.+|+.|++||.-. ++-+.
T Consensus 148 F-----------~~~~~~~~--ng~e~~~~~~l~~P~~~~E~~r~g~~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~ 214 (717)
T KOG4471|consen 148 F-----------AYHAWFPV--NGSENGQHWKLYDPMFKNEYRRQGLPNESWRISKINSNYKLCDSYPAKLVVPKSISDE 214 (717)
T ss_pred c-----------ccHhhcCC--CCccccccccccChhhHhHHHhcCCChhheeeecccccccccccCccceEeccccCHH
Confidence 1 12222222 11233457999999 999999999999999999999999999999654 45567
Q ss_pred HhhccccccCCCCCCCCCCCcccccCCCCceeeecccccccCCCCCCCccHHHHHHHHHhhh
Q psy11381 470 MANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGMFCRFENGVHPRENLADVLLATRDHS 531 (738)
Q Consensus 470 ~~~~~~~f~Np~Y~p~~~~~~i~P~~~~~~~~~W~~~~~r~~~~~~~~e~~~d~l~~~~~~~ 531 (738)
++.+++.|+.--++|+ ..|++|...+-.+|+-+.+.|-+..+...+|.+.+.+++++++.
T Consensus 215 eL~~VasFRsr~RlPv--lsw~Hp~sgAvIaRcSQPlVG~~g~Rn~~DEkll~~i~~a~A~~ 274 (717)
T KOG4471|consen 215 ELLRVASFRSRCRLPV--LSWRHPESGAVIARCSQPLVGWSGKRNKDDEKLLQAIADANAQD 274 (717)
T ss_pred HHHHHhhhhhcCccce--EEEEcCCCCceEEecCCcccchhcccccchHHHHHHHHHhcccc
Confidence 8889999999999999 69999999999999999999999999999999999999999887
No 7
>KOG1818|consensus
Probab=99.41 E-value=2.1e-14 Score=163.70 Aligned_cols=100 Identities=26% Similarity=0.427 Sum_probs=89.0
Q ss_pred CCchhhhhhhhccccccccccc-----cccccccccCCCCCCCCCCCccccccccchhhhhhhhhcccCCccccCCCCCC
Q psy11381 607 KPSDKINESLLSTRLSLSSLSE-----ETEGRRKVENGQHPLNPNSDVTCDYECNGIEALLDEEINSIAIDWKPVVNINQ 681 (738)
Q Consensus 607 ~p~~~~~~~l~~~~~~~~~~~~-----~t~~~~~~e~~~~p~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~Wvpd~~~~~ 681 (738)
...+||.++++.|.++|.+.+. +|+.+.|.+..+||.....+...++ .++++|+ +...
T Consensus 105 ~v~~~~l~~~q~wa~af~~~~~~~~v~~t~~~lk~~g~~Fpe~~e~d~mf~~--------------~~~pdW~---D~~~ 167 (634)
T KOG1818|consen 105 EVKNKILELIQNWAAAFRNSSKYSYVLDTYQKLKGGGHVFPELDENDAMFDA--------------ETAPDWI---DSEE 167 (634)
T ss_pred hHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHhcCCccccccccchhhhcc--------------cCCcccc---cccc
Confidence 4458999999999999999866 9999999999999999876554333 4689999 6778
Q ss_pred C-ccCCCCCcccchhhhhccCCeecCCCCCCceeCCCCCCCCC
Q psy11381 682 C-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGHLTRTD 723 (738)
Q Consensus 682 C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp~~~~~~p 723 (738)
| .|.+.|++++||||||+||+|||..|+.+.++||..|..+|
T Consensus 168 C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~ 210 (634)
T KOG1818|consen 168 CLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKP 210 (634)
T ss_pred cceeeeeeeeccccccccccchhhccCccccccCccccccccc
Confidence 9 79999999999999999999999999999999999999887
No 8
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.28 E-value=7.5e-13 Score=111.82 Aligned_cols=46 Identities=37% Similarity=0.927 Sum_probs=33.0
Q ss_pred CccccCCCCCCC-ccCCCCCcccchhhhhccCCeecCCCCCCceeCC
Q psy11381 671 IDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716 (738)
Q Consensus 671 ~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp 716 (738)
|.|+||.++..| .|+.+|++++||||||.||.|||++|+.++..+|
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~ 47 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLP 47 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEccc
Confidence 689999999999 6999999999999999999999999999999988
No 9
>KOG1819|consensus
Probab=99.25 E-value=7.6e-12 Score=137.60 Aligned_cols=55 Identities=31% Similarity=0.805 Sum_probs=51.0
Q ss_pred cCCccccCCCCCCC-ccCCCCCcccchhhhhccCCeecCCCCCCceeCCCCCC-CCC
Q psy11381 669 IAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGHLT-RTD 723 (738)
Q Consensus 669 ~~~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp~~~~-~~p 723 (738)
.+|-|+||.++..| .|+.+|+.++||||||+||+|||..||...++||.+|. +.|
T Consensus 891 sppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~ 947 (990)
T KOG1819|consen 891 SPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAP 947 (990)
T ss_pred CCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCc
Confidence 57899999999999 69999999999999999999999999999999999884 444
No 10
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729|consensus
Probab=99.02 E-value=7.2e-11 Score=125.56 Aligned_cols=57 Identities=33% Similarity=0.719 Sum_probs=50.8
Q ss_pred hcccCCccccCCCCCCC-ccCC-CCCcccchhhhhccCCeecCCCCCCceeCCCCCCCC
Q psy11381 666 INSIAIDWKPVVNINQC-QCST-PFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGHLTRT 722 (738)
Q Consensus 666 ~~~~~~~Wvpd~~~~~C-~C~~-~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp~~~~~~ 722 (738)
.+..++.|+||.+++.| .|+. .|+++.||||||+||.|||..|+.++..||.+....
T Consensus 155 ~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~ 213 (288)
T KOG1729|consen 155 SNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKP 213 (288)
T ss_pred CCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCC
Confidence 34468999999999999 6988 999999999999999999999999999999876443
No 12
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.98 E-value=2.4e-10 Score=130.89 Aligned_cols=56 Identities=27% Similarity=0.536 Sum_probs=47.0
Q ss_pred ccCCccccCCCC-CCC-ccCCCCCcc-----cchhhhhccCCeecCCCCCCceeCCCCCCCCC
Q psy11381 668 SIAIDWKPVVNI-NQC-QCSTPFDHF-----TRKYHCFKCGDVLCLNCIGDRSQLPGHLTRTD 723 (738)
Q Consensus 668 ~~~~~Wvpd~~~-~~C-~C~~~Fs~~-----~RKHHCR~CG~IfC~~CS~~~~~Lp~~~~~~p 723 (738)
..++.|++|+++ +.| .|+.+|+.+ .||||||+||+|||+.||+++..+|.....+|
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKP 510 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKP 510 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCC
Confidence 468999999985 889 699999754 69999999999999999999987766554444
No 13
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.64 E-value=1.3e-08 Score=82.75 Aligned_cols=40 Identities=35% Similarity=0.934 Sum_probs=37.1
Q ss_pred CCCC-ccCCCCCcccchhhhhccCCeecCCCCCCceeCCCC
Q psy11381 679 INQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718 (738)
Q Consensus 679 ~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp~~ 718 (738)
+..| .|+..|+++.||||||.||++||..|+.++..+|..
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~ 42 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM 42 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc
Confidence 5679 699999999999999999999999999999999874
No 14
>KOG1841|consensus
Probab=98.63 E-value=6.9e-09 Score=123.36 Aligned_cols=53 Identities=30% Similarity=0.686 Sum_probs=49.3
Q ss_pred hcccCCccccCCCCCCC-ccCCCCCcccchhhhhccCCeecCCCCCCceeCCCC
Q psy11381 666 INSIAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718 (738)
Q Consensus 666 ~~~~~~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp~~ 718 (738)
++...|.|+||..+..| .|..+|++++||||||+||+|+|..|+..+..|...
T Consensus 544 lgkkqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl 597 (1287)
T KOG1841|consen 544 LGKKQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL 597 (1287)
T ss_pred cCCCCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc
Confidence 67789999999999999 699999999999999999999999999998887664
No 15
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=98.62 E-value=5.8e-09 Score=114.33 Aligned_cols=110 Identities=21% Similarity=0.400 Sum_probs=67.7
Q ss_pred hhcccCCCCCCCCC--CCCCcccChHHHHHHcCCCCCC-eeeecchhhhhhccccCCccccchhH----hhccccccCCC
Q psy11381 409 LYCFTYTSTTESPK--SYGWDFFSLEQEFKRMQVPNDE-WCLTNLNKNYESGDLSENTYSLWGYM----ANRMEDYINPL 481 (738)
Q Consensus 409 ~~~f~~tf~~~~~~--~~GW~~f~~~~Ey~R~g~~~~~-Wrlt~~Nk~y~~~~~~~~t~Slw~~~----~~~~~~f~Np~ 481 (738)
+|||.|.+...... .+||+.||++.||+|||++.+. |||+++|++|+.|.+||...-|...+ +.+..+|+...
T Consensus 2 LFAF~y~~~~~~~~~~~~~~~~~d~~~E~~R~g~~~~~~Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~~~ 81 (353)
T PF06602_consen 2 LFAFSYQPPKSELKSKSNGWKIYDWEREFERLGLPSDSSWRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRSKG 81 (353)
T ss_dssp SGGGT---S-SSHHHHH-HHCT--HHHHHHHTT-SCSS-EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBGGG
T ss_pred cccccCCCCCCcccccCCCccccCHHHHHHHhCCCCCCCeeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhccCC
Confidence 57889987544433 3799999999999999999876 99999999999999999988777754 56788999999
Q ss_pred CCCCCCCCcccccCCCCceeeecccccccCCCCCCCccH
Q psy11381 482 YSPDAHPDFIRPDLSPQNIRFWRGMFCRFENGVHPRENL 520 (738)
Q Consensus 482 Y~p~~~~~~i~P~~~~~~~~~W~~~~~r~~~~~~~~e~~ 520 (738)
+.|+ ..|++|....--+|-=+.+-+-...+...+|.+
T Consensus 82 R~Pv--~~W~~~~~~a~L~Rssqp~~g~~~~r~~~De~l 118 (353)
T PF06602_consen 82 RFPV--LSWRHPENGAVLLRSSQPLVGLSNSRSKEDEKL 118 (353)
T ss_dssp ---E--EEEE-TTT--EEEEEE-B--TTTT---HHHHHH
T ss_pred ccce--EEEeecCCCeEEEEeccccccccccCchhhHHH
Confidence 9998 689999876544444444444433333333333
No 16
>KOG1842|consensus
Probab=98.59 E-value=8e-09 Score=113.50 Aligned_cols=50 Identities=24% Similarity=0.666 Sum_probs=45.4
Q ss_pred hhhhhcccCCccccCCCCCCC-ccCCCCCcccchhhhhccCCeecCCCCCC
Q psy11381 662 LDEEINSIAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGD 711 (738)
Q Consensus 662 l~~~~~~~~~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~ 711 (738)
..+.++...+.|+.|.+|.-| .|..+|++.+||||||.||+|.|..|+..
T Consensus 163 k~k~~EqsvVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 163 KRKRLEQSVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred HHHHHHhccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 456677778999999999999 69999999999999999999999999864
No 17
>KOG1843|consensus
Probab=97.72 E-value=1.6e-05 Score=87.49 Aligned_cols=53 Identities=11% Similarity=-0.071 Sum_probs=46.2
Q ss_pred hhcccCCccccCCCCCCC-ccCCCCC-cccchhhhhccCCeecCCCCCCceeCCC
Q psy11381 665 EINSIAIDWKPVVNINQC-QCSTPFD-HFTRKYHCFKCGDVLCLNCIGDRSQLPG 717 (738)
Q Consensus 665 ~~~~~~~~Wvpd~~~~~C-~C~~~Fs-~~~RKHHCR~CG~IfC~~CS~~~~~Lp~ 717 (738)
.++..++.|.+++....| .|+.+|+ ++.||||||.||.+||..|+.-+-.+|.
T Consensus 146 sl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~ 200 (473)
T KOG1843|consen 146 SLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPV 200 (473)
T ss_pred hhcCcCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCC
Confidence 456779999999999999 7999996 7899999999999999999976555554
No 18
>KOG4424|consensus
Probab=97.11 E-value=0.00018 Score=82.28 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=39.9
Q ss_pred CCccccCCCCCCC-ccCCCCC-cccchhhhhccCCeecCCCCCCceeCCC
Q psy11381 670 AIDWKPVVNINQC-QCSTPFD-HFTRKYHCFKCGDVLCLNCIGDRSQLPG 717 (738)
Q Consensus 670 ~~~Wvpd~~~~~C-~C~~~Fs-~~~RKHHCR~CG~IfC~~CS~~~~~Lp~ 717 (738)
+++| +..+..| .|+.+|+ ...|||||+.||.|+|+.|++....+-.
T Consensus 408 ~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~ 455 (623)
T KOG4424|consen 408 APRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSY 455 (623)
T ss_pred Cccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcc
Confidence 3477 7889999 7999994 7789999999999999999998887654
No 19
>KOG1409|consensus
Probab=96.62 E-value=0.00055 Score=74.52 Aligned_cols=49 Identities=33% Similarity=0.764 Sum_probs=39.5
Q ss_pred ccCCccccCCCCCCC-ccCCCCCcc-----------cchhhhhccCCeecCCCCCCceeCCCCC
Q psy11381 668 SIAIDWKPVVNINQC-QCSTPFDHF-----------TRKYHCFKCGDVLCLNCIGDRSQLPGHL 719 (738)
Q Consensus 668 ~~~~~Wvpd~~~~~C-~C~~~Fs~~-----------~RKHHCR~CG~IfC~~CS~~~~~Lp~~~ 719 (738)
...|+|. +.+.| .|..+|... .|-||||.||..+|..|++++...|--+
T Consensus 274 ~etpewl---~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 274 VETPEWL---DSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred ecCcccc---ccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 3578998 56678 499998432 3789999999999999999999888644
No 20
>KOG1811|consensus
Probab=96.04 E-value=0.001 Score=76.55 Aligned_cols=56 Identities=23% Similarity=0.547 Sum_probs=46.2
Q ss_pred ccCCccccCC----CCCCC-c-cCCCCCcccchhhhhccCCeecCCCCCCceeCCCCCCCCC
Q psy11381 668 SIAIDWKPVV----NINQC-Q-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGHLTRTD 723 (738)
Q Consensus 668 ~~~~~Wvpd~----~~~~C-~-C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~Lp~~~~~~p 723 (738)
+.-.+|+||. .-.-| . |...|..++||||||.||...|..|..++....+.+...|
T Consensus 311 ~al~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~ 372 (1141)
T KOG1811|consen 311 PALHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENP 372 (1141)
T ss_pred chhhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCc
Confidence 3345899987 44567 3 8899999999999999999999999998888777776665
No 21
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=95.60 E-value=0.016 Score=50.69 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=26.9
Q ss_pred CCeEEEecCCCCCcchhHHHHHHhhhccchh
Q psy11381 227 GVSVVVHCSDGWDRTVQVCSLASLMLDPYYR 257 (738)
Q Consensus 227 g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyyR 257 (738)
+.+|||||++|.+||..++++..++..+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~ 69 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESE 69 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhc
Confidence 6899999999999999999888887766554
No 22
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=95.60 E-value=0.016 Score=50.69 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=26.9
Q ss_pred CCeEEEecCCCCCcchhHHHHHHhhhccchh
Q psy11381 227 GVSVVVHCSDGWDRTVQVCSLASLMLDPYYR 257 (738)
Q Consensus 227 g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyyR 257 (738)
+.+|||||++|.+||..++++..++..+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~ 69 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESE 69 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhc
Confidence 6899999999999999999888887766554
No 23
>KOG0230|consensus
Probab=94.78 E-value=0.018 Score=72.23 Aligned_cols=33 Identities=39% Similarity=1.137 Sum_probs=32.0
Q ss_pred ccCCCCCCC-ccCCCCCcccchhhhhccCCeecCCC
Q psy11381 674 KPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNC 708 (738)
Q Consensus 674 vpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~C 708 (738)
.||.....| .|...|+.++|+||| ||.|||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 889999999 799999999999999 999999999
No 24
>KOG0230|consensus
Probab=93.51 E-value=0.034 Score=69.99 Aligned_cols=31 Identities=35% Similarity=0.941 Sum_probs=26.2
Q ss_pred CCCCC-ccCCCCCcccchhhhhccCCeecCCCCCC
Q psy11381 678 NINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGD 711 (738)
Q Consensus 678 ~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~ 711 (738)
....| .|. +.++||||||.||+|||.+|.+.
T Consensus 4 s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~ 35 (1598)
T KOG0230|consen 4 SSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS 35 (1598)
T ss_pred cccchhccc---cccccCCCCcccCceeccccCCC
Confidence 45667 588 68899999999999999999863
No 25
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=92.77 E-value=0.2 Score=46.69 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.0
Q ss_pred HHHHHHcCCeEEEecCCCCCcchhHHH
Q psy11381 220 IAQAIVEGVSVVVHCSDGWDRTVQVCS 246 (738)
Q Consensus 220 ia~~v~~g~sVLVHcsDGWDrT~Qv~S 246 (738)
|...+.+|..|||||.+|.+||..+++
T Consensus 74 i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 74 IDDAREKGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred HHHHHhcCCcEEEECCCCCchhHHHHH
Confidence 334445789999999999999998875
No 26
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=92.63 E-value=0.17 Score=47.58 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.3
Q ss_pred HHHHHHcCCeEEEecCCCCCcchhHHH
Q psy11381 220 IAQAIVEGVSVVVHCSDGWDRTVQVCS 246 (738)
Q Consensus 220 ia~~v~~g~sVLVHcsDGWDrT~Qv~S 246 (738)
|.+++.+|..|||||..|.+||+.+++
T Consensus 71 i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 71 IEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred HHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 333456899999999999999998875
No 27
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.61 E-value=0.16 Score=49.82 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=22.6
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhhhc
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLMLD 253 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLlLD 253 (738)
+...||+||+-|-|||-.+++|.+.+|.
T Consensus 123 ~~~p~l~HC~aGKDRTG~~~alll~~lG 150 (164)
T PF13350_consen 123 APGPVLFHCTAGKDRTGVVAALLLSLLG 150 (164)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCCCccHHHHHHHHHHHcC
Confidence 3369999999999999999999998885
No 28
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=91.70 E-value=0.15 Score=47.37 Aligned_cols=29 Identities=45% Similarity=0.688 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCeEEEecCCCCCcchhHHH
Q psy11381 218 WFIAQAIVEGVSVVVHCSDGWDRTVQVCS 246 (738)
Q Consensus 218 ~~ia~~v~~g~sVLVHcsDGWDrT~Qv~S 246 (738)
.+|.+++.+|..|||||..|-+||+-+++
T Consensus 64 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 64 EFIENAISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp HHHHHHHHTTSEEEEEESSSSSHHHHHHH
T ss_pred HhhhhhhcccceeEEEeCCCcccchHHHH
Confidence 33444477899999999999999998775
No 29
>KOG1729|consensus
Probab=88.80 E-value=0.08 Score=57.32 Aligned_cols=42 Identities=31% Similarity=0.642 Sum_probs=39.1
Q ss_pred cCCccccCCCCCCC-ccCCCCCcccchhhhhccCCeecCCCCC
Q psy11381 669 IAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIG 710 (738)
Q Consensus 669 ~~~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~ 710 (738)
..+.|+-+.++..| .|...|.+..|.|||+.||++||..|+.
T Consensus 10 ~~~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~ 52 (288)
T KOG1729|consen 10 NMVDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTL 52 (288)
T ss_pred hhHHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhh
Confidence 35789999999999 6999999999999999999999999987
No 30
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=86.77 E-value=1.3 Score=46.86 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=40.4
Q ss_pred HHHHHHH--cCCeEEEecCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHhhhhhcCcC
Q psy11381 219 FIAQAIV--EGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHK 276 (738)
Q Consensus 219 ~ia~~v~--~g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyyRTi~GF~~LIEKeWlsfGH~ 276 (738)
.+++.+. +.-+||+||..|=|||..+++|.--.+++..++ |-.|.+.+++.
T Consensus 126 ~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~-------v~~dyl~~~~~ 178 (249)
T COG2365 126 ELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDET-------VAADYLLTNRY 178 (249)
T ss_pred HHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhH-------HHHHHHHcCCc
Confidence 3344444 349999999999999999999998888888886 56677777766
No 31
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=85.84 E-value=0.79 Score=45.71 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=30.5
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhhhccchhhHHHHH-HHHHhhhhhcCcC
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQ-ALIEKDWLSFGHK 276 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyyRTi~GF~-~LIEKeWlsfGH~ 276 (738)
...+|||||.+|-|||..|++. ||-+.|.- .=|--|+..|+-+
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~--------lRk~Q~W~~~~i~~Ey~~f~~~ 133 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGC--------LRKLQGWSLSSIFDEYRRFAGP 133 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHH--------HHHHTTB-HHHHHHHHHHHHGG
T ss_pred CCCCEEEEeCCCCcchhhHHHH--------HHHHcCCCHHHHHHHHHHhcCC
Confidence 5679999999999999999875 66666653 2466677776655
No 32
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=85.13 E-value=1.4 Score=45.06 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=21.9
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
.+.+|+|||++|-.||..+|++.-++
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~~~ 190 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDILL 190 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHH
Confidence 36799999999999999999865443
No 33
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=83.78 E-value=1.2 Score=44.26 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.8
Q ss_pred HHcCCeEEEecCCCCCcchhHHHHH
Q psy11381 224 IVEGVSVVVHCSDGWDRTVQVCSLA 248 (738)
Q Consensus 224 v~~g~sVLVHcsDGWDrT~Qv~SLa 248 (738)
+.+|..|+|||..|-.||+-+++..
T Consensus 95 ~~~g~~V~VHC~aGigRSgt~~a~y 119 (166)
T PTZ00242 95 STPPETIAVHCVAGLGRAPILVALA 119 (166)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999888764
No 34
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=83.55 E-value=1.6 Score=45.57 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.1
Q ss_pred CCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 227 GVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 227 g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
+.+|+|||++|-.||..+|++..++
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~ 217 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILL 217 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHH
Confidence 7799999999999999999876554
No 35
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=82.97 E-value=0.61 Score=43.95 Aligned_cols=33 Identities=27% Similarity=0.752 Sum_probs=26.0
Q ss_pred CCCC-ccCCCCCcc-cchhhhhccCCeecCCCCCC
Q psy11381 679 INQC-QCSTPFDHF-TRKYHCFKCGDVLCLNCIGD 711 (738)
Q Consensus 679 ~~~C-~C~~~Fs~~-~RKHHCR~CG~IfC~~CS~~ 711 (738)
...| .|+.+|.++ ++.+-|..|+.-+|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 3479 599999766 68899999999999999854
No 36
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=82.79 E-value=1.3 Score=48.13 Aligned_cols=25 Identities=32% Similarity=0.698 Sum_probs=21.3
Q ss_pred CCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 227 GVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 227 g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
..+||||||+|-.||.-+|+|--+|
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i 253 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICI 253 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHH
Confidence 3689999999999999999886443
No 37
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=81.47 E-value=2 Score=43.14 Aligned_cols=26 Identities=38% Similarity=0.746 Sum_probs=22.3
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
...+|+|||+||-.||..++++..++
T Consensus 169 ~~~pivVhc~~G~gRsg~f~~~~~~~ 194 (235)
T PF00102_consen 169 PNGPIVVHCSDGVGRSGTFCAIDILI 194 (235)
T ss_dssp TSSEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CccceEeecccccccccccccchhhc
Confidence 57999999999999999999765543
No 38
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=81.15 E-value=2.6 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=20.2
Q ss_pred CCeEEEecCCCCCcchhHHHHHH
Q psy11381 227 GVSVVVHCSDGWDRTVQVCSLAS 249 (738)
Q Consensus 227 g~sVLVHcsDGWDrT~Qv~SLaq 249 (738)
..+++||||+|-.||...|+|--
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi 243 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDI 243 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHH
Confidence 46999999999999999998653
No 39
>PF12578 3-PAP: Myotubularin-associated protein; InterPro: IPR022587 The proteins in this entry are found in eukaryotes, and are typically between 115 and 138 amino acids in length. This entry contains myotubularin-associated protein 12 (also known as the phosphatidylinositol-3 phosphate 3-phosphatase adapter subunit, 3-PAP). 3-PAP is a catalytically inactive member of the myotubularin gene family, which coprecipitates lipid phosphatidylinositol 3-phosphate-3-phosphatase activity from lysates of human platelets [].
Probab=79.24 E-value=0.89 Score=44.45 Aligned_cols=40 Identities=23% Similarity=0.520 Sum_probs=30.4
Q ss_pred ccccCCCCC-CCCCCCcccccCCCCceeeecccccccCCCC
Q psy11381 475 EDYINPLYS-PDAHPDFIRPDLSPQNIRFWRGMFCRFENGV 514 (738)
Q Consensus 475 ~~f~Np~Y~-p~~~~~~i~P~~~~~~~~~W~~~~~r~~~~~ 514 (738)
++|.+..+. |.....+|.|.....+|++|.++|.||....
T Consensus 60 ~~~~~~~~~~P~d~~~lL~P~~~~~~i~lW~qcYlRW~P~a 100 (142)
T PF12578_consen 60 EQFFRDWFSKPADSHGLLLPLLSGPQIKLWSQCYLRWIPEA 100 (142)
T ss_pred HhhccccccCCcccccccccccccccHHHHHHHHHccCcHH
Confidence 445555443 3223589999999999999999999998755
No 40
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=78.58 E-value=3.1 Score=41.78 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecCCCCCcchhHHH
Q psy11381 211 KVTLDTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCS 246 (738)
Q Consensus 211 ~~iL~~a~~ia~~v~~g~sVLVHcsDGWDrT~Qv~S 246 (738)
..+-..+.+|..++.+|..|||||.-|--||+-|.+
T Consensus 89 ~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 89 EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH
Confidence 445556777888888889999999999999987764
No 41
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=77.76 E-value=3.6 Score=45.18 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCccccccccccchHHHHHHHhhhccCc
Q psy11381 2 VKSKEYSDRDKKGEAYERLVEKFKEIDV 29 (738)
Q Consensus 2 ~~~~~y~~r~kK~~~y~~lv~k~k~id~ 29 (738)
.+.++|..|.++..+.+.+.+.+.++--
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~e~~~i~~ 36 (323)
T PHA02746 9 FNAFDFFDKTNHAKFCEFVLLEHAEVMD 36 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 3567888888888888888888887763
No 42
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=77.55 E-value=4.4 Score=41.03 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCeEEEecCCCCCcchhHHHHHHhhhcc
Q psy11381 218 WFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLMLDP 254 (738)
Q Consensus 218 ~~ia~~v~~g~sVLVHcsDGWDrT~Qv~SLaqLlLDP 254 (738)
..++..+.+|..|+|||--|-.||.-|+|-.-+.|.+
T Consensus 124 ~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 124 EELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGD 160 (168)
T ss_dssp HHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 4577788899999999999999999988765555543
No 43
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=77.35 E-value=3.9 Score=44.66 Aligned_cols=24 Identities=38% Similarity=0.729 Sum_probs=20.8
Q ss_pred CeEEEecCCCCCcchhHHHHHHhh
Q psy11381 228 VSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 228 ~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
.++|||||+|-.||.-.|+|--++
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i 253 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICL 253 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHH
Confidence 589999999999999999875443
No 44
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=73.91 E-value=5.6 Score=42.40 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.6
Q ss_pred HHcCCeEEEecCCCCCcchhHHHHH
Q psy11381 224 IVEGVSVVVHCSDGWDRTVQVCSLA 248 (738)
Q Consensus 224 v~~g~sVLVHcsDGWDrT~Qv~SLa 248 (738)
+..|..|+|||.-|-.||.-|++..
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~Aay 191 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIV 191 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHH
Confidence 4588899999999999999887654
No 45
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=73.48 E-value=1.8 Score=46.68 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=27.6
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhhhccc
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLMLDPY 255 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLlLDPy 255 (738)
++..++||||-|-.||.-..+|-+||-+|-
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~ 246 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPN 246 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhccc
Confidence 678999999999999999999999998774
No 46
>PHA02738 hypothetical protein; Provisional
Probab=72.39 E-value=2.7 Score=46.16 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=20.7
Q ss_pred CeEEEecCCCCCcchhHHHHHHhh
Q psy11381 228 VSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 228 ~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
.+||||||+|-.||...|+|.-+|
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i 251 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISI 251 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHH
Confidence 589999999999999999876543
No 47
>KOG0793|consensus
Probab=71.86 E-value=3 Score=49.89 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHH-cCCeEEEecCCCCCcchhHHHHHHhhh
Q psy11381 209 HIKVTLDTAWFIAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLML 252 (738)
Q Consensus 209 hI~~iL~~a~~ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLlL 252 (738)
.-+.||+.--.|-++-. ..+.|+||||||-.||-.-+.+-++|-
T Consensus 908 sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~ 952 (1004)
T KOG0793|consen 908 SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLN 952 (1004)
T ss_pred chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHH
Confidence 46889999888888887 789999999999999998886666653
No 48
>KOG1841|consensus
Probab=71.04 E-value=3.2 Score=51.96 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=33.0
Q ss_pred ccCCccccCCCCCCC-ccCCCCCcccchhhhhccCCeec
Q psy11381 668 SIAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLC 705 (738)
Q Consensus 668 ~~~~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC 705 (738)
.+++.|.+|..+..| .|.+.|.+..+||||| |+++=
T Consensus 646 e~ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls~ 682 (1287)
T KOG1841|consen 646 EVKSVWFADGIAPNGELAETRFTFTGERHHSR--GKLSL 682 (1287)
T ss_pred eecceeccCCcCCCceecccceeeeccccccc--ccccc
Confidence 678899999999999 6999999999999999 77773
No 49
>KOG0993|consensus
Probab=71.02 E-value=0.24 Score=55.55 Aligned_cols=53 Identities=19% Similarity=0.688 Sum_probs=45.7
Q ss_pred cCCccccCCCCCCC-ccCCCCCcccchhhhhc--cCCeecCCCCCCceeCCCCCCCCC
Q psy11381 669 IAIDWKPVVNINQC-QCSTPFDHFTRKYHCFK--CGDVLCLNCIGDRSQLPGHLTRTD 723 (738)
Q Consensus 669 ~~~~Wvpd~~~~~C-~C~~~Fs~~~RKHHCR~--CG~IfC~~CS~~~~~Lp~~~~~~p 723 (738)
....|+-+.++..| .|...|..++-+-||-+ ||.|||-+|+ ++++|.....+|
T Consensus 458 ~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~--Katvp~l~~e~~ 513 (542)
T KOG0993|consen 458 QELEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCL--KATVPSLPNERP 513 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHH--Hhhcccccccch
Confidence 46689999999999 59999998888888887 9999999999 477888776665
No 50
>PRK12361 hypothetical protein; Provisional
Probab=66.73 E-value=7.7 Score=45.42 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCeEEEecCCCCCcchhHHH
Q psy11381 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCS 246 (738)
Q Consensus 215 ~~a~~ia~~v~~g~sVLVHcsDGWDrT~Qv~S 246 (738)
+++.+|-+++.+|.+|||||.-|..|++-|++
T Consensus 163 ~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ 194 (547)
T PRK12361 163 QAINWIHRQVRANKSVVVHCALGRGRSVLVLA 194 (547)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCCcHHHHHH
Confidence 34455556667899999999999999998764
No 51
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=65.80 E-value=7.8 Score=45.40 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.1
Q ss_pred EEEecCCCCCcchhHHHHHHhhhc----cchhhHHHHH
Q psy11381 230 VVVHCSDGWDRTVQVCSLASLMLD----PYYRTIKGFQ 263 (738)
Q Consensus 230 VLVHcsDGWDrT~Qv~SLaqLlLD----PyyRTi~GF~ 263 (738)
.+||||.|-.||.++|++-. |.| .-+.++..|.
T Consensus 469 PVVHCSAGVGRTGTFIAi~l-lk~~~~~sle~IV~dlR 505 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALV-LKDNPHSNLEQVRADFR 505 (535)
T ss_pred ceEEcCCCCchHHHHHHHHH-HhccccCCHHHHHHHHH
Confidence 47999999999999999854 443 3455555554
No 52
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=61.58 E-value=11 Score=36.02 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.6
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhhhc
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLMLD 253 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLlLD 253 (738)
....||+||.-|- ||..+.+|.+..+.
T Consensus 85 ~~~pvL~HC~sG~-Rt~~l~al~~~~~g 111 (135)
T TIGR01244 85 AEGPVLAYCRSGT-RSSLLWGFRQAAEG 111 (135)
T ss_pred CCCCEEEEcCCCh-HHHHHHHHHHHHcC
Confidence 3578999999999 99999988776653
No 53
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=60.79 E-value=4 Score=38.41 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=20.6
Q ss_pred CCCC-ccCCCCC-cccchhhhhccCCeecCC
Q psy11381 679 INQC-QCSTPFD-HFTRKYHCFKCGDVLCLN 707 (738)
Q Consensus 679 ~~~C-~C~~~Fs-~~~RKHHCR~CG~IfC~~ 707 (738)
-..| .|+++|- +-++--+|-.||.+|=..
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 4569 7999995 444455699998876544
No 54
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=60.33 E-value=4.1 Score=40.62 Aligned_cols=26 Identities=27% Similarity=0.782 Sum_probs=18.6
Q ss_pred CC-ccCCCCC------------cccchhhhhccCCeecC
Q psy11381 681 QC-QCSTPFD------------HFTRKYHCFKCGDVLCL 706 (738)
Q Consensus 681 ~C-~C~~~Fs------------~~~RKHHCR~CG~IfC~ 706 (738)
.| .|+.+++ ..+|+++|.+||.-|=.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~ 40 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTT 40 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceE
Confidence 47 4887772 35567999999987644
No 55
>KOG3576|consensus
Probab=59.33 E-value=5.3 Score=41.70 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=25.7
Q ss_pred ccCCCCCCC-ccCCCCCc---cc---------chhhhhccCCeecCC
Q psy11381 674 KPVVNINQC-QCSTPFDH---FT---------RKYHCFKCGDVLCLN 707 (738)
Q Consensus 674 vpd~~~~~C-~C~~~Fs~---~~---------RKHHCR~CG~IfC~~ 707 (738)
-+|.+.-.| .|+..|++ ++ +||-|+.||+-|=+.
T Consensus 112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndt 158 (267)
T KOG3576|consen 112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDT 158 (267)
T ss_pred CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccch
Confidence 345678889 69999974 33 588899999988553
No 56
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.20 E-value=7.7 Score=36.90 Aligned_cols=38 Identities=26% Similarity=0.732 Sum_probs=27.3
Q ss_pred ccccCCCCCCC-ccCCCCCcc----------cchhhhhccCCeecCCCC
Q psy11381 672 DWKPVVNINQC-QCSTPFDHF----------TRKYHCFKCGDVLCLNCI 709 (738)
Q Consensus 672 ~Wvpd~~~~~C-~C~~~Fs~~----------~RKHHCR~CG~IfC~~CS 709 (738)
.|........| .|+.+|.-. ..+.-|..|+.+||..|=
T Consensus 48 ~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 48 PLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred cccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 44333334569 799999632 346779999999999994
No 57
>KOG1314|consensus
Probab=53.07 E-value=4.5 Score=45.10 Aligned_cols=33 Identities=30% Similarity=0.723 Sum_probs=23.8
Q ss_pred ccCCccccCCCCC-----CC-ccCCCCCcccchhhhhccCC
Q psy11381 668 SIAIDWKPVVNIN-----QC-QCSTPFDHFTRKYHCFKCGD 702 (738)
Q Consensus 668 ~~~~~Wvpd~~~~-----~C-~C~~~Fs~~~RKHHCR~CG~ 702 (738)
-+++.|.|....+ -| .|+.- --.|-||||.|.+
T Consensus 75 ~vp~~wkPe~~~D~~~lqfCk~CqgY--KapRSHHCrkCnr 113 (414)
T KOG1314|consen 75 FVPLGWKPENPKDEMFLQFCKKCQGY--KAPRSHHCRKCNR 113 (414)
T ss_pred CCCCCCCCCCChhHHHHHHHhhccCc--CCCccccchHHHH
Confidence 3678898866555 57 58762 4568899999864
No 58
>KOG1716|consensus
Probab=50.35 E-value=20 Score=38.66 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 217 AWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 217 a~~ia~~v~~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
..+|.++...|..|||||..|--|++-++ +|=||
T Consensus 145 ~~fI~~a~~~~~~vlVHC~~GvSRSat~v-iAYlM 178 (285)
T KOG1716|consen 145 ISFIEKAREKGGKVLVHCQAGVSRSATLV-IAYLM 178 (285)
T ss_pred HHHHHHHHhCCCeEEEEcCCccchhHHHH-HHHHH
Confidence 44555566689999999999999988554 55554
No 59
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=49.83 E-value=2.9 Score=34.42 Aligned_cols=27 Identities=37% Similarity=1.175 Sum_probs=16.3
Q ss_pred C-ccCCCCCcc------cchhhhhccCCeecCCC
Q psy11381 682 C-QCSTPFDHF------TRKYHCFKCGDVLCLNC 708 (738)
Q Consensus 682 C-~C~~~Fs~~------~RKHHCR~CG~IfC~~C 708 (738)
| .|..+|... ..+..|..|+.+||-.|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 6 688888754 35799999999999887
No 60
>KOG4275|consensus
Probab=47.73 E-value=3.4 Score=45.02 Aligned_cols=34 Identities=24% Similarity=0.683 Sum_probs=30.6
Q ss_pred CCCCCC-ccCCCCCcccchhhhhccCCeecCCCCC
Q psy11381 677 VNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIG 710 (738)
Q Consensus 677 ~~~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~ 710 (738)
..+..| .|+..|..+.+||-|-.|-+-||..||.
T Consensus 42 ~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~ 76 (350)
T KOG4275|consen 42 SQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSR 76 (350)
T ss_pred cccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHH
Confidence 345589 6999999999999999999999999994
No 61
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.58 E-value=9.1 Score=37.17 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=20.5
Q ss_pred CCCC-ccCCCCC-cccchhhhhccCCeec
Q psy11381 679 INQC-QCSTPFD-HFTRKYHCFKCGDVLC 705 (738)
Q Consensus 679 ~~~C-~C~~~Fs-~~~RKHHCR~CG~IfC 705 (738)
-..| .|+++|- +.++--+|-.||.++=
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~~ 37 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQFP 37 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCccC
Confidence 4569 7999995 5566778999998753
No 62
>KOG1718|consensus
Probab=45.20 E-value=21 Score=36.56 Aligned_cols=26 Identities=42% Similarity=0.772 Sum_probs=23.4
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhhh
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLML 252 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLlL 252 (738)
.|--+||||--|--|.+-+| ||=||-
T Consensus 93 ~gG~TLvHC~AGVSRSAsLC-lAYLmK 118 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLC-LAYLMK 118 (198)
T ss_pred cCCcEEEEEccccchhHHHH-HHHHHH
Confidence 89999999999999999998 887764
No 63
>KOG0317|consensus
Probab=44.71 E-value=4.7 Score=43.81 Aligned_cols=28 Identities=29% Similarity=0.865 Sum_probs=19.2
Q ss_pred CCCCc-cCCCCCcccchh-hhhccCCeecCCCCCC
Q psy11381 679 INQCQ-CSTPFDHFTRKY-HCFKCGDVLCLNCIGD 711 (738)
Q Consensus 679 ~~~C~-C~~~Fs~~~RKH-HCR~CG~IfC~~CS~~ 711 (738)
...|. |=. .|.| -|-.||+|||+.|...
T Consensus 239 ~~kC~LCLe-----~~~~pSaTpCGHiFCWsCI~~ 268 (293)
T KOG0317|consen 239 TRKCSLCLE-----NRSNPSATPCGHIFCWSCILE 268 (293)
T ss_pred CCceEEEec-----CCCCCCcCcCcchHHHHHHHH
Confidence 34674 754 2322 2999999999999753
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.95 E-value=31 Score=32.40 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=21.9
Q ss_pred HHHHHH-cCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 220 IAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 220 ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
.++.|. ....||+||--|. |.+.+-+|+|-+
T Consensus 78 f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l~~~~ 109 (110)
T PF04273_consen 78 FADALESLPKPVLAHCRSGT-RASALWALAQAK 109 (110)
T ss_dssp HHHHHHTTTTSEEEE-SCSH-HHHHHHHHHHH-
T ss_pred HHHHHHhCCCCEEEECCCCh-hHHHHHHHHhhh
Confidence 344555 3458999999999 788888888753
No 65
>KOG2283|consensus
Probab=40.91 E-value=9.5 Score=43.91 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=43.4
Q ss_pred CCChhhhhccccccchHHHHHHHHHHHHHHHHHHH------cCCeEEEecCCCCCcchhHH
Q psy11381 191 SPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIV------EGVSVVVHCSDGWDRTVQVC 245 (738)
Q Consensus 191 ~~~~~~~l~~le~s~WL~hI~~iL~~a~~ia~~v~------~g~sVLVHcsDGWDrT~Qv~ 245 (738)
..+.+.|...+..-+|.+|=-=-|...+.+++.|+ -...|+|||-.|-.||+.+.
T Consensus 65 ~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~i 125 (434)
T KOG2283|consen 65 LYDPSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMI 125 (434)
T ss_pred cCCccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEE
Confidence 34456788888889999997777777777777766 45888999999999998543
No 66
>KOG0789|consensus
Probab=39.71 E-value=23 Score=39.23 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.6
Q ss_pred cCCeEEEecCCCCCcchhHHHHH
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLA 248 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLa 248 (738)
...+++||||.|-.||.-++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 46899999999999999877554
No 67
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=36.83 E-value=34 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.0
Q ss_pred HcCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 225 VEGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 225 ~~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
-+++.+++||..|-.||+-..+++.||
T Consensus 122 p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 122 PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999887777775
No 68
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=35.76 E-value=26 Score=28.39 Aligned_cols=32 Identities=22% Similarity=0.598 Sum_probs=19.1
Q ss_pred CCC-c--cCCCCCcccch----hhhhccCCeecCCCCCC
Q psy11381 680 NQC-Q--CSTPFDHFTRK----YHCFKCGDVLCLNCIGD 711 (738)
Q Consensus 680 ~~C-~--C~~~Fs~~~RK----HHCR~CG~IfC~~CS~~ 711 (738)
..| . |+..|..-... -.|..||..||..|-..
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 367 4 88877543332 57999999999999753
No 69
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=34.27 E-value=16 Score=27.71 Aligned_cols=24 Identities=38% Similarity=0.931 Sum_probs=16.6
Q ss_pred CC-ccCCCCCcc-------cchhhhhccCCee
Q psy11381 681 QC-QCSTPFDHF-------TRKYHCFKCGDVL 704 (738)
Q Consensus 681 ~C-~C~~~Fs~~-------~RKHHCR~CG~If 704 (738)
.| .|+..|.+- .++--|.+||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 58 688888643 2456688888776
No 70
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=33.90 E-value=21 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.742 Sum_probs=15.8
Q ss_pred cCCCCCcccchhhhhccCCeecCCC
Q psy11381 684 CSTPFDHFTRKYHCFKCGDVLCLNC 708 (738)
Q Consensus 684 C~~~Fs~~~RKHHCR~CG~IfC~~C 708 (738)
|+..=.++ ...|+.||++||...
T Consensus 4 C~~~~~l~--~f~C~~C~~~FC~~H 26 (39)
T smart00154 4 CRKKVGLT--GFKCRHCGNLFCGEH 26 (39)
T ss_pred cCCccccc--CeECCccCCcccccc
Confidence 55543332 467999999999854
No 71
>KOG2836|consensus
Probab=33.76 E-value=34 Score=33.94 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.3
Q ss_pred cCCeEEEecCCCCCcchhHHHHHHhhhccch
Q psy11381 226 EGVSVVVHCSDGWDRTVQVCSLASLMLDPYY 256 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT~Qv~SLaqLlLDPyy 256 (738)
-|..|-|||--|-.|.+.+++||-|=+-=-|
T Consensus 96 p~~cvavhcvaglgrapvlvalalie~gmky 126 (173)
T KOG2836|consen 96 PGCCVAVHCVAGLGRAPVLVALALIEAGMKY 126 (173)
T ss_pred CCCeEEEEeecccCcchHHHHHHHHHccccH
Confidence 6899999999999999999999976554444
No 72
>PF15581 Imm35: Immunity protein 35
Probab=32.81 E-value=30 Score=31.65 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=18.4
Q ss_pred hhccchhhHHHHHHHHHhhhhh
Q psy11381 251 MLDPYYRTIKGFQALIEKDWLS 272 (738)
Q Consensus 251 lLDPyyRTi~GF~~LIEKeWls 272 (738)
--|.--+|++|.+.|||.||-.
T Consensus 24 ~~esa~~~i~~l~~lIe~eWRG 45 (93)
T PF15581_consen 24 GEESARRTIRNLESLIEHEWRG 45 (93)
T ss_pred chhHHHHHHHHHHHHHHHHHcC
Confidence 3456678999999999999974
No 73
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=32.34 E-value=33 Score=33.50 Aligned_cols=47 Identities=19% Similarity=0.534 Sum_probs=31.8
Q ss_pred hhhhhhhhhcccCCccccCCCCCCC-ccCCCCCcccc-----------------hhhhhccCCee
Q psy11381 658 IEALLDEEINSIAIDWKPVVNINQC-QCSTPFDHFTR-----------------KYHCFKCGDVL 704 (738)
Q Consensus 658 ~~~~l~~~~~~~~~~Wvpd~~~~~C-~C~~~Fs~~~R-----------------KHHCR~CG~If 704 (738)
...++.+.+........++..-+.| .|+..+-...+ =..|..||+||
T Consensus 70 ~~~QL~ev~~~~~l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 70 PEEQLREVLERFGLKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred HHHHHHHHHHHcCCccccCCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence 3356677667777777777777889 59887633222 24588888876
No 74
>KOG0320|consensus
Probab=32.17 E-value=9 Score=39.18 Aligned_cols=29 Identities=38% Similarity=0.859 Sum_probs=18.8
Q ss_pred CCC-ccCCCCCcccchh-hhhccCCeecCCCCCC
Q psy11381 680 NQC-QCSTPFDHFTRKY-HCFKCGDVLCLNCIGD 711 (738)
Q Consensus 680 ~~C-~C~~~Fs~~~RKH-HCR~CG~IfC~~CS~~ 711 (738)
-.| .|-..|+ .|- .--+||+|||..|...
T Consensus 132 ~~CPiCl~~~s---ek~~vsTkCGHvFC~~Cik~ 162 (187)
T KOG0320|consen 132 YKCPICLDSVS---EKVPVSTKCGHVFCSQCIKD 162 (187)
T ss_pred cCCCceecchh---hccccccccchhHHHHHHHH
Confidence 456 4655553 122 3358999999999864
No 75
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=31.61 E-value=81 Score=29.95 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHH-cCCeEEEecCC----------------------------C-----CCcchhHHHHHHhhhcc
Q psy11381 211 KVTLDTAWFIAQAIV-EGVSVVVHCSD----------------------------G-----WDRTVQVCSLASLMLDP 254 (738)
Q Consensus 211 ~~iL~~a~~ia~~v~-~g~sVLVHcsD----------------------------G-----WDrT~Qv~SLaqLlLDP 254 (738)
...|..-..+|+.|. .|+-+.|-|+| | +||-.-+-|++-.|.||
T Consensus 34 ~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 34 EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccccchhhHHHHHHHhhCC
Confidence 345555666777776 77777777777 2 78888888888888888
No 76
>KOG0792|consensus
Probab=29.66 E-value=43 Score=42.40 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=27.9
Q ss_pred cchHHH-----HHHHHHHHHHHHHHHHc--CCeEEEecCCCCCcchhHH
Q psy11381 204 SGWLRH-----IKVTLDTAWFIAQAIVE--GVSVVVHCSDGWDRTVQVC 245 (738)
Q Consensus 204 s~WL~h-----I~~iL~~a~~ia~~v~~--g~sVLVHcsDGWDrT~Qv~ 245 (738)
+-|-+| ++..|+-...| +.+.. +-.||||||-|-.||-.+-
T Consensus 1034 taWPDHg~P~D~~~FL~Fleev-rsvR~~t~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1034 TAWPDHGVPDDPNDFLDFLEEV-RSVRRGTNPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred cccccCCCCCChHHHHHHHHHH-HHHhccCCCCeEEEccCCCCcceehH
Confidence 466655 55666655443 44553 5689999999999997653
No 77
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.90 E-value=15 Score=39.75 Aligned_cols=17 Identities=35% Similarity=0.983 Sum_probs=14.2
Q ss_pred hhhhccCCeecCCCCCC
Q psy11381 695 YHCFKCGDVLCLNCIGD 711 (738)
Q Consensus 695 HHCR~CG~IfC~~CS~~ 711 (738)
--|..||+|||..|.-.
T Consensus 228 ps~t~CgHlFC~~Cl~~ 244 (271)
T COG5574 228 PSCTPCGHLFCLSCLLI 244 (271)
T ss_pred cccccccchhhHHHHHH
Confidence 45899999999999744
No 78
>KOG1655|consensus
Probab=27.58 E-value=1.4e+02 Score=31.41 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=40.9
Q ss_pred ccccccCCCCCCCccHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHhhh
Q psy11381 505 GMFCRFENGVHPRENLADVLLATRDHSSSLDDHVKFLQKRIFSFKQSLSK 554 (738)
Q Consensus 505 ~~~~r~~~~~~~~e~~~d~l~~~~~~~~~le~~v~~L~~~l~~~~~~~~~ 554 (738)
.+|||..+. .|..++.+.+-.+...+.+++.+|+.|..+|..++..+++
T Consensus 3 RiFG~~k~k-~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k 51 (218)
T KOG1655|consen 3 RIFGRGKPK-EPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKK 51 (218)
T ss_pred ccccCCCCC-CCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 468887544 4567899999999999999999999999999998877765
No 79
>PRK11595 DNA utilization protein GntX; Provisional
Probab=26.62 E-value=18 Score=37.65 Aligned_cols=29 Identities=31% Similarity=0.755 Sum_probs=22.6
Q ss_pred CC-ccCCCCCcccchhhhhccCCe------ecCCCCCC
Q psy11381 681 QC-QCSTPFDHFTRKYHCFKCGDV------LCLNCIGD 711 (738)
Q Consensus 681 ~C-~C~~~Fs~~~RKHHCR~CG~I------fC~~CS~~ 711 (738)
-| .|...+..+ .++|..||.. +|..|...
T Consensus 22 lC~~C~~~l~~~--~~~C~~Cg~~~~~~~~~C~~C~~~ 57 (227)
T PRK11595 22 ICSVCSRALRTL--KTCCPQCGLPATHPHLPCGRCLQK 57 (227)
T ss_pred ccHHHHhhCCcc--cCcCccCCCcCCCCCCCcHHHHcC
Confidence 58 598888765 5799999975 49999764
No 80
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.57 E-value=24 Score=26.91 Aligned_cols=24 Identities=46% Similarity=0.937 Sum_probs=16.7
Q ss_pred CC-ccCCCCCcc-------cchhhhhccCCee
Q psy11381 681 QC-QCSTPFDHF-------TRKYHCFKCGDVL 704 (738)
Q Consensus 681 ~C-~C~~~Fs~~-------~RKHHCR~CG~If 704 (738)
.| .|++.|.+- .++.-|-+||.+|
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 58 699988643 3466688887776
No 81
>KOG1717|consensus
Probab=25.34 E-value=1e+02 Score=33.94 Aligned_cols=48 Identities=29% Similarity=0.359 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHHHHHHH-HHHHcCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 203 SSGWLRHIKVTLDTAWFIA-QAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 203 ~s~WL~hI~~iL~~a~~ia-~~v~~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
+-.|-+.+..+.--|+.+. ++-.+..-|||||=-|--|..-|| +|-||
T Consensus 226 sDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvt-vaYLM 274 (343)
T KOG1717|consen 226 SDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVT-VAYLM 274 (343)
T ss_pred cchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHH-HHHHH
Confidence 5688888888887666544 455588999999999999988777 44433
No 82
>KOG2433|consensus
Probab=25.31 E-value=36 Score=38.90 Aligned_cols=45 Identities=31% Similarity=0.548 Sum_probs=34.1
Q ss_pred cCCeEEE------ecCCCC---CcchhHHHHHHhhhccchhhHHHHHHHHHhhhhhc
Q psy11381 226 EGVSVVV------HCSDGW---DRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSF 273 (738)
Q Consensus 226 ~g~sVLV------HcsDGW---DrT~Qv~SLaqLlLDPyyRTi~GF~~LIEKeWlsf 273 (738)
+|+.|+| |--=|- |-|.|+- =|+|||+|---+..++.-+|-||..
T Consensus 501 ~GTPVMIGGgvLAHTIlGVd~n~~TGq~K---FLILDPHYTGaeDl~tI~~KGWCgW 554 (577)
T KOG2433|consen 501 SGTPVMIGGGVLAHTILGVDFNDTTGQTK---FLILDPHYTGAEDLKTITSKGWCGW 554 (577)
T ss_pred cCCcEEEccceeeeeEeeeeeecccCceE---EEEeCCCcCChhhHHHHhhcccccc
Confidence 6776655 544443 4566654 4789999999999999999999964
No 83
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=24.29 E-value=35 Score=33.41 Aligned_cols=24 Identities=42% Similarity=0.926 Sum_probs=17.0
Q ss_pred CCCC-ccCCCCCcccchhhhhccCCeecCCCCC
Q psy11381 679 INQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIG 710 (738)
Q Consensus 679 ~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~ 710 (738)
..+| .|+.+. | |.=|.|||..|-.
T Consensus 28 ~~hCp~Cg~PL--F------~KdG~v~CPvC~~ 52 (131)
T COG1645 28 AKHCPKCGTPL--F------RKDGEVFCPVCGY 52 (131)
T ss_pred HhhCcccCCcc--e------eeCCeEECCCCCc
Confidence 4578 588863 2 2459999999973
No 84
>KOG1814|consensus
Probab=23.72 E-value=32 Score=39.33 Aligned_cols=41 Identities=29% Similarity=0.742 Sum_probs=31.5
Q ss_pred CCccccCCCCCCC-ccCCCCCccc--chhhhhccCCeecCCCCCC
Q psy11381 670 AIDWKPVVNINQC-QCSTPFDHFT--RKYHCFKCGDVLCLNCIGD 711 (738)
Q Consensus 670 ~~~Wvpd~~~~~C-~C~~~Fs~~~--RKHHCR~CG~IfC~~CS~~ 711 (738)
+..|+ +.....| .|.+...... -|+||-.||.-||.-|+.-
T Consensus 360 sekwl-~~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 360 SEKWL-ESNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HHHHH-HhcCCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 34787 4567789 6998765444 3889999999999999854
No 85
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=23.49 E-value=1.3e+02 Score=35.09 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH-HHHc--CCeEEEecCCCCCcchhHHHHHHhhh
Q psy11381 209 HIKVTLDTAWFIAQ-AIVE--GVSVVVHCSDGWDRTVQVCSLASLML 252 (738)
Q Consensus 209 hI~~iL~~a~~ia~-~v~~--g~sVLVHcsDGWDrT~Qv~SLaqLlL 252 (738)
.++..|-.+...++ .+.+ +.+|||+|.+|-|. +.-++||=||+
T Consensus 355 ~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDl-SVgVaLaILc~ 400 (451)
T PF04179_consen 355 DLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDL-SVGVALAILCK 400 (451)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchH-HHHHHHHHHHH
Confidence 45555555554443 3444 89999999999997 44445666664
No 86
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=23.41 E-value=34 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=14.3
Q ss_pred CCCC-ccCCCCCcccchhhhhccCCe
Q psy11381 679 INQC-QCSTPFDHFTRKYHCFKCGDV 703 (738)
Q Consensus 679 ~~~C-~C~~~Fs~~~RKHHCR~CG~I 703 (738)
..-| .|... .-.|-|||+.||+.
T Consensus 48 ~~~C~~C~~~--kp~Rs~HC~~C~~C 71 (174)
T PF01529_consen 48 LKYCSTCKII--KPPRSHHCRVCNRC 71 (174)
T ss_pred CEECcccCCc--CCCcceeccccccc
Confidence 3456 46553 44577888888753
No 87
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=23.26 E-value=38 Score=28.91 Aligned_cols=6 Identities=50% Similarity=1.597 Sum_probs=3.7
Q ss_pred hhccCC
Q psy11381 697 CFKCGD 702 (738)
Q Consensus 697 CR~CG~ 702 (738)
||.||+
T Consensus 19 CRRCGr 24 (61)
T COG2126 19 CRRCGR 24 (61)
T ss_pred hhhccc
Confidence 666664
No 88
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=23.24 E-value=63 Score=26.89 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=36.2
Q ss_pred ChhhhhccccccchHHHHHHHHHHHHHHHHHHH--c-CCeEEEecCCCCC
Q psy11381 193 SVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAIV--E-GVSVVVHCSDGWD 239 (738)
Q Consensus 193 ~~~~~l~~le~s~WL~hI~~iL~~a~~ia~~v~--~-g~sVLVHcsDGWD 239 (738)
....|.-..+...+-......-+.|+..|+.+. + +..|+||-.||+=
T Consensus 7 ~~~~W~v~~eg~~ra~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i 56 (62)
T PF09954_consen 7 EDGGWAVKKEGAKRASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGKI 56 (62)
T ss_pred CCCCceEEeCCCcccccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCeE
Confidence 345577777777777777777788888888876 4 8999999999963
No 89
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.87 E-value=44 Score=40.52 Aligned_cols=31 Identities=35% Similarity=0.836 Sum_probs=24.4
Q ss_pred CCCCC-ccCCCCCcccchhhhhccCCe------ecCCCCCCc
Q psy11381 678 NINQC-QCSTPFDHFTRKYHCFKCGDV------LCLNCIGDR 712 (738)
Q Consensus 678 ~~~~C-~C~~~Fs~~~RKHHCR~CG~I------fC~~CS~~~ 712 (738)
.+..| .|+.++.. ..|-.||.. ||..|-..-
T Consensus 14 ~akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 14 NNRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAET 51 (645)
T ss_pred CCccccccCCCCCC----CcCCCCCCCCCcccccccccCCcc
Confidence 56689 69998853 369999998 999997643
No 90
>PHA02768 hypothetical protein; Provisional
Probab=22.82 E-value=36 Score=28.62 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=16.9
Q ss_pred CCC-ccCCCCCccc------chhh----hhccCCeec
Q psy11381 680 NQC-QCSTPFDHFT------RKYH----CFKCGDVLC 705 (738)
Q Consensus 680 ~~C-~C~~~Fs~~~------RKHH----CR~CG~IfC 705 (738)
-.| .|+..|+... |+|+ |-.||++|=
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~ 42 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISL 42 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCCcccceec
Confidence 369 5999996432 3444 777777654
No 91
>KOG2845|consensus
Probab=22.40 E-value=40 Score=39.41 Aligned_cols=23 Identities=35% Similarity=1.055 Sum_probs=17.2
Q ss_pred CCCCCccCCCCCcccchh----hhhccCCeecC
Q psy11381 678 NINQCQCSTPFDHFTRKY----HCFKCGDVLCL 706 (738)
Q Consensus 678 ~~~~C~C~~~Fs~~~RKH----HCR~CG~IfC~ 706 (738)
....|.|+. ||| .|-.||+|+|-
T Consensus 156 grk~C~CQg------~kHpLi~NCL~CGkIVCe 182 (505)
T KOG2845|consen 156 GRKPCNCQG------RKHPLINNCLGCGKIVCE 182 (505)
T ss_pred CCccccccC------CcCchhhcccccceeEEE
Confidence 446788876 344 59999999984
No 92
>KOG0741|consensus
Probab=22.28 E-value=1.7e+02 Score=35.28 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=56.0
Q ss_pred ecCCcchHHHHHHHHHHHHHh-ccCCCChhhhhccccc--cchHHHHHHHHHHHHHHHHHHHc-----CCeEEEecCCCC
Q psy11381 167 FFGIENIHVMRSSLAKLIETC-EANSPSVNSFLSGLDS--SGWLRHIKVTLDTAWFIAQAIVE-----GVSVVVHCSDGW 238 (738)
Q Consensus 167 fl~I~nIh~mr~S~~kL~~~~-~~~~~~~~~~l~~le~--s~WL~hI~~iL~~a~~ia~~v~~-----g~sVLVHcsDGW 238 (738)
-.+++||.|-|+-|-.-++-+ .+...+...+-+-+.. -.|=.++..+|+-+...++.+.+ =.|||+|.--|-
T Consensus 470 ~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~s 549 (744)
T KOG0741|consen 470 PVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGS 549 (744)
T ss_pred chhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCC
Confidence 457899999776665544433 2222333333222333 58999999999999999999972 289999999999
Q ss_pred CcchhHHHHH
Q psy11381 239 DRTVQVCSLA 248 (738)
Q Consensus 239 DrT~Qv~SLa 248 (738)
..|+.-+-+|
T Consensus 550 GKTaLAA~iA 559 (744)
T KOG0741|consen 550 GKTALAAKIA 559 (744)
T ss_pred ChHHHHHHHH
Confidence 8887654333
No 93
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=22.07 E-value=2.5e+02 Score=24.74 Aligned_cols=38 Identities=39% Similarity=0.767 Sum_probs=25.9
Q ss_pred cCCeEEEecCCCCCcc------hhHH-------HHHHhhhccchhhHHHHHHHHHh
Q psy11381 226 EGVSVVVHCSDGWDRT------VQVC-------SLASLMLDPYYRTIKGFQALIEK 268 (738)
Q Consensus 226 ~g~sVLVHcsDGWDrT------~Qv~-------SLaqLlLDPyyRTi~GF~~LIEK 268 (738)
-|.|+-+ ||-||... +.++ |..-||.-|-|- |..||||
T Consensus 33 igisiei-csygwkksngiky~cl~~slllgt~silgl~~apayf----flqliek 83 (83)
T PF13214_consen 33 IGISIEI-CSYGWKKSNGIKYFCLLLSLLLGTASILGLCVAPAYF----FLQLIEK 83 (83)
T ss_pred hhceeee-eccccccCCCeeeHHHHHHHHHhHHHHHHHHHhHHHH----HHHHhhC
Confidence 6777765 89999863 3333 445567778774 6778886
No 94
>KOG2164|consensus
Probab=21.35 E-value=38 Score=39.67 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=22.5
Q ss_pred CCCC-ccCCCCCcccchhhhhccCCeecCCCCCCceeC
Q psy11381 679 INQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQL 715 (738)
Q Consensus 679 ~~~C-~C~~~Fs~~~RKHHCR~CG~IfC~~CS~~~~~L 715 (738)
-..| .|=.++.+-.|- .||+|||..|.=+.+..
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~ 219 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNY 219 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhh
Confidence 3568 587777655543 49999999997544433
No 95
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=20.95 E-value=47 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=17.9
Q ss_pred c-ccCCCCCCC-ccCCCCCcccchhh-hhccCC
Q psy11381 673 W-KPVVNINQC-QCSTPFDHFTRKYH-CFKCGD 702 (738)
Q Consensus 673 W-vpd~~~~~C-~C~~~Fs~~~RKHH-CR~CG~ 702 (738)
| ........| .|+. +.+.|| |..||.
T Consensus 19 ~kl~~p~l~~C~~cG~----~~~~H~vc~~cG~ 47 (55)
T TIGR01031 19 AKLTAPTLVVCPNCGE----FKLPHRVCPSCGY 47 (55)
T ss_pred ccccCCcceECCCCCC----cccCeeECCccCe
Confidence 5 444566779 6988 355576 999983
No 96
>KOG0791|consensus
Probab=20.40 E-value=1.1e+02 Score=34.69 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=41.3
Q ss_pred hhhhccccccchHHH-----HHHHHHHHHHHHHHHH-cCCeEEEecCCCCCcchhHHHHHHhh
Q psy11381 195 NSFLSGLDSSGWLRH-----IKVTLDTAWFIAQAIV-EGVSVVVHCSDGWDRTVQVCSLASLM 251 (738)
Q Consensus 195 ~~~l~~le~s~WL~h-----I~~iL~~a~~ia~~v~-~g~sVLVHcsDGWDrT~Qv~SLaqLl 251 (738)
+++...+....|-.| -..++.-...+-+.+. ....++||||-|-.||--.-+|=+|+
T Consensus 249 sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LL 311 (374)
T KOG0791|consen 249 SRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLL 311 (374)
T ss_pred cceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHH
Confidence 344455556677766 4566666666667776 67899999999999998777766655
No 97
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=20.14 E-value=56 Score=35.25 Aligned_cols=31 Identities=23% Similarity=0.727 Sum_probs=24.7
Q ss_pred ccCCCCCCC-ccCCCCCccc-------chhhhhccCCee
Q psy11381 674 KPVVNINQC-QCSTPFDHFT-------RKYHCFKCGDVL 704 (738)
Q Consensus 674 vpd~~~~~C-~C~~~Fs~~~-------RKHHCR~CG~If 704 (738)
-.-++++.| .|.+.|...- -..||.+||+.|
T Consensus 127 p~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F 165 (278)
T PF15135_consen 127 PQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNF 165 (278)
T ss_pred CcccccccccccccccCCCccccccceeeeecccccccc
Confidence 455689999 6999987543 268999999998
Done!