RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11381
(738 letters)
>gnl|CDD|219103 pfam06602, Myotub-related, Myotubularin-related. This family
represents a region within eukaryotic
myotubularin-related proteins that is sometimes found
with pfam02893. Myotubularin is a dual-specific lipid
phosphatase that dephosphorylates phosphatidylinositol
3-phosphate and phosphatidylinositol (3,5)-bi-phosphate.
Mutations in gene encoding myotubularin-related proteins
have been associated with disease.
Length = 118
Score = 179 bits (456), Expect = 3e-53
Identities = 64/117 (54%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 53 KLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGFS-A 111
+LC TYP + VP S + L +KFRS+GRLPVL++ H N AVI RCSQPL GFS
Sbjct: 2 ELCPTYPAKLVVPKSISDDELKKVAKFRSRGRLPVLSWRHPENGAVIVRCSQPLVGFSGK 61
Query: 112 RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFF 168
RC EDE+LL I + N S +Y+VD RPR+NA+ANRA G GYENE Y N + F
Sbjct: 62 RCKEDEKLLQAIRKANAQSRKLYIVDARPRVNALANRAKGGGYENEENYPNAELVFL 118
>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like. This
short region is highly conserved and seems to be common
to many myotubularin proteins with protein tyrosine
pyrophosphate activity. As the family has a number of
highly conserved residues such as histidine, cysteine,
glutamine and aspartate, it is possible that this
represents a catalytic core of the active enzymatic part
of the proteins.
Length = 55
Score = 125 bits (316), Expect = 1e-34
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 229 SVVVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCG 282
SV+VHCSDGWDRT Q+ SLA L+LDPYYRTI+GFQ LIEK+WLSFGH F DRCG
Sbjct: 2 SVLVHCSDGWDRTSQLSSLAQLLLDPYYRTIEGFQVLIEKEWLSFGHPFSDRCG 55
>gnl|CDD|241364 cd13210, PH-GRAM_MTMR6-like, Myotubularian (MTM) related (MTMR) 7
and 8 proteins Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR6, MTMR7, and MRMR8 are all member of the
myotubularin dual specificity protein phosphatase gene
family. They bind to phosphoinositide lipids through its
PH-GRAM domain. These proteins also interact with each
other as well as MTMR9. They contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, an active PTP domain, a SET-interaction domain,
and a C-terminal coiled-coil region.
Myotubularin-related proteins are a subfamily of protein
tyrosine phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The
lipid-binding FYVE domain has been shown to bind
phosphotidylinositol-3-phosphate. The GRAM domain, found
in myotubularins, glucosyltransferases, and other
putative membrane-associated proteins, is part of a
larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 98
Score = 110 bits (277), Expect = 6e-29
Identities = 40/54 (74%), Positives = 48/54 (88%)
Query: 318 ILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRP 371
IL MHIAS+E+ PL+T GSPL+IRCKTFL VTFVIP+ER+C+DIY TL KLS+P
Sbjct: 45 ILHMHIASVEKLPLTTGGSPLVIRCKTFLVVTFVIPKERDCHDIYTTLLKLSKP 98
>gnl|CDD|241499 cd13345, PH-GRAM_MTMR8, Myotubularian (MTM) related 8 protein
(MTMR8) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR8 is a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR8 binds
to phosphoinositide lipids through its PH-GRAM domain.
MTMR8 can self associate and interacts with MTMR6, MTMR7
and MTMR9. MTMR8 contains a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, an active
PTP domain, a SET-interaction domain, and a C-terminal
coiled-coil region. Myotubularin-related proteins are a
subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 105
Score = 75.2 bits (185), Expect = 2e-16
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 318 ILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPE 372
I HIA++E+ PL++LG PL++RCK F FV+ +R C+++Y++L KLS+P
Sbjct: 50 IAHHHIATVEKLPLTSLGCPLLLRCKNFRVAHFVLDSDRVCHEVYISLLKLSQPV 104
>gnl|CDD|241497 cd13343, PH-GRAM_MTMR6, Myotubularian (MTM) related (MTMR) 6
protein Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR6 is a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR6 binds
to phosphoinositide lipids through its PH-GRAM domain.
It acts as a negative regulator of KCNN4/KCa3.1 channel
activity in CD4+ T-cells possibly by decreasing
intracellular levels of phosphatidylinositol-3
phosphatase and negatively regulates proliferation of
reactivated CD4+ T-cells MTMR6 interacts with MTMR7,
MTMR8 and MTMR9. MTMR6 contains a N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an active PTP domain, a SET-interaction domain, and a
C-terminal coiled-coil region. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 104
Score = 74.9 bits (184), Expect = 3e-16
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 318 ILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRP 371
IL HIA++E+ L+T G PL+I+CK F V F++PRER+C+DIY +L +LSRP
Sbjct: 48 ILHHHIAAVEKLALTTSGCPLVIQCKNFRVVHFIVPRERDCHDIYNSLLQLSRP 101
>gnl|CDD|241498 cd13344, PH-GRAM_MTMR7, Myotubularian (MTM) related 7 protein
(MTMR7) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR7 is a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR6 binds
to phosphoinositide lipids through its PH-GRAM domain
and can hydrolyze phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate. MTMR7 interacts
with MTMR6, MTMR8 and MTMR9. MTMR7 contains a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, an active PTP domain, a SET-interaction domain,
and a C-terminal coiled-coil region.
Myotubularin-related proteins are a subfamily of protein
tyrosine phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 107
Score = 67.6 bits (165), Expect = 9e-14
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 318 ILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPE 372
IL I+SIE+ + G PL+IRCK F + +IP+ER+C+D+Y++L +L+RP
Sbjct: 50 ILHSQISSIEKQATTATGCPLLIRCKNFQIIQLIIPQERDCHDVYISLIRLARPV 104
>gnl|CDD|241365 cd13211, PH-GRAM_MTMR9, Myotubularian (MTM) related 9 protein
(MTMR9) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR9 is a catalytically inactive phosphatase
that plays a role as an adapter for the phosphatase
myotubularin to regulate myotubularintracellular
location. It contains a Gly residue instead of a
conserved Cys residue in the dsPTPase catalytic loop
which renders it catalytically inactive as a
phosphatase. MTMR9 contains an N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an inactive PTP domain, a SET interaction domain, and a
C-terminal coiled-coil region. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 159
Score = 53.0 bits (128), Expect = 3e-08
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 313 GDPREILLMH--IASIERGP--LSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKL 368
+ E+ L+H I SIE+ S+ G+ +I++CK F + IP EC +I +++ L
Sbjct: 43 DNAEELWLLHSNIDSIEKKFVGQSSGGT-IILKCKDFRIIQLDIPGMEECLNIASSIEAL 101
Query: 369 SRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDF 428
S S+ P F Y E + GW
Sbjct: 102 S-------------------SLESITLYYP-------------FFYRPMFEVLED-GWTA 128
Query: 429 FSLEQEFKRMQVPNDEWCLTNLNKNY 454
F E EF R+ D+W +++N +
Sbjct: 129 FDPESEFARLLAETDDWRRSSVNNKF 154
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finger is named
after four proteins that it has been found in: Fab1,
YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been
shown to bind two Zn++ ions. The FYVE finger has eight
potential zinc coordinating cysteine positions. Many
members of this family also include two histidines in a
motif R+HHC+XCG, where + represents a charged residue
and X any residue. We have included members which do not
conserve these histidine residues but are clearly
related.
Length = 68
Score = 45.5 bits (108), Expect = 2e-06
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 673 WKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGHL 719
W P ++ C C PF F R++HC CG V C +C + L L
Sbjct: 3 WVPDSDVTNCMGCGKPFSFFRRRHHCRNCGKVFCSSCSSKKIALLPKL 50
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 44.7 bits (106), Expect = 8e-06
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 28/97 (28%)
Query: 164 KFHFFGIENIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQA 223
+H+ G + V S + ++E A V L+ +SSG
Sbjct: 4 HYHYTGWPDHGVPESPDS-ILELLRA----VKKNLNQSESSG------------------ 40
Query: 224 IVEGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIK 260
VVVHCS G RT ++ L+ +
Sbjct: 41 -----PVVVHCSAGVGRTGTFVAIDILLQQLEAEAGE 72
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 44.7 bits (106), Expect = 8e-06
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 28/97 (28%)
Query: 164 KFHFFGIENIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQA 223
+H+ G + V S + ++E A V L+ +SSG
Sbjct: 4 HYHYTGWPDHGVPESPDS-ILELLRA----VKKNLNQSESSG------------------ 40
Query: 224 IVEGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIK 260
VVVHCS G RT ++ L+ +
Sbjct: 41 -----PVVVHCSAGVGRTGTFVAIDILLQQLEAEAGE 72
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins
to membrane lipids via interaction with
phosphatidylinositol-3-phosphate, PI3P; present in Fab1,
YOTB, Vac1, and EEA1;.
Length = 57
Score = 41.7 bits (98), Expect = 4e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 680 NQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGHLTRT 722
+ C C PF R++HC CG + C C +R LP
Sbjct: 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGK 46
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1.
The FYVE zinc finger is named after four proteins where
it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1.
The FYVE finger has been shown to bind two Zn2+ ions.
The FYVE finger has eight potential zinc coordinating
cysteine positions. The FYVE finger is structurally
related to the PHD finger and the RING finger. Many
members of this family also include two histidines in a
motif R+HHC+XCG, where + represents a charged residue
and X any residue. The FYVE finger functions in the
membrane recruitment of cytosolic proteins by binding to
phosphatidylinositol 3-phosphate (PI3P), which is
prominent on endosomes. The R+HHC+XCG motif is critical
for PI3P binding.
Length = 68
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 670 AIDWKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
W P ++ C C F+ R++HC CG + C C ++ LP
Sbjct: 1 RPHWIPDEEVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLP 48
>gnl|CDD|214738 smart00595, MADF, subfamily of SANT domain.
Length = 89
Score = 36.6 bits (85), Expect = 0.004
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 3 KSKEYSDRDKKGEAYERLVEKFKEIDVNASRETVVKKVNSLRSVYPKEFAKLC 55
+ +Y ++++K +A+E + E+ S E K+ +LR Y +E +L
Sbjct: 16 RHPDYRNKEEKRKAWEEIAEEL-----GLSVEECKKRWKNLRDRYRRELKRLQ 63
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription
factor Myb/SANT-like. The myb/SANT-like domain in
Adf-1 (MADF) is an approximately 80-amino-acid module
that directs sequence specific DNA binding to a site
consisting of multiple tri-nucleotide repeats. The MADF
domain is found in one or more copies in eukaryotic and
viral proteins and is often associated with the BESS
domain. It is likely that the MADF domain is more
closely related to the myb/SANT domain than it is to
other HTH domains.
Length = 84
Score = 35.8 bits (83), Expect = 0.008
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 3 KSKEYSDRDKKGEAYERLVEKFKEIDVNASRETVVKKVNSLRSVYPKEFAK 53
+Y +++ + A+E + E+ E + E KK +LR Y +E K
Sbjct: 15 SHPDYRNKELRERAWEEIAEELGE---DVDVEECKKKWKNLRDRYRRELRK 62
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 33.1 bits (75), Expect = 0.60
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 594 REESDLSVPPVEKKPSDKINESLLSTRLSLSSLSEETEGRRKVENGQHPLNP-------N 646
E S+ V + + P +++S S S + E ++E P + +
Sbjct: 96 AELSEEDVEELRRVPRTVLSKSTDSDISSTALEKIE-----RMEIAIKPGDEDERVLWRD 150
Query: 647 SDVTCDYECNGIEALLDEEINSIAIDWKPVVNINQCQCSTPFDHFTRKYHCFKCGDVLC 705
+VTC + CN E +SI + NI +CS D T + C CG V C
Sbjct: 151 EEVTCVHGCN-------EGPSSI-----EMGNIGGLKCSL-CDLKTNLWVCLSCGYVGC 196
>gnl|CDD|222702 pfam14350, Beta_protein, Beta protein. This family includes the
beta protein from Bacteriophage T4. Beta protein
prevents the gop protein from killing the bacterial host
cell.
Length = 344
Score = 31.2 bits (71), Expect = 2.0
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 193 SVNSFLSGLDSSG--WLRHIKVTLDTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASL 250
S++ S D G I+ T D W+ IV G V DG + V + L
Sbjct: 244 SIHPEPSDPDPGGGRPNPKIRYTTDDDWY----IVRGRRVK---GDGAGQYVDLA--REL 294
Query: 251 MLDPYYRTIKGFQALIEKDWLSFGHKFIDRC 281
+ Y+R + S+G ++I+ C
Sbjct: 295 VNSDYFRGSEF----------SWGDEYIEEC 315
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 29.9 bits (68), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
FI AI +G V+VHC G R+ + +A LM
Sbjct: 63 FIDDAIQKGGKVLVHCQAGISRSATLI-IAYLM 94
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 30.1 bits (68), Expect = 2.5
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLML 252
FI +A+ +G VVVHC G R+ V + A LML
Sbjct: 97 FIEEALSKGKKVVVHCQGGIGRSGTVIA-AYLML 129
>gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP)
reversibly catalyzes trehalose synthesis and degradation
from alpha-glucose-1-phosphate (alpha-Glc-1-P) and
glucose. The catalyzing activity includes the
phosphorolysis of trehalose, which produce alpha-Glc-1-P
and glucose, and the subsequent synthesis of trehalose.
This family is most closely related to the GT1 family of
glycosyltransferases.
Length = 372
Score = 30.6 bits (70), Expect = 2.6
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 458 DLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQ 498
DLS +W ++ +EDY ++ P+++ P + P+
Sbjct: 117 DLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPPQVPPR 154
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 29.9 bits (68), Expect = 3.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 230 VVVHCSDGWDRTVQVCSLASLM 251
+VVHCS G RT ++ L+
Sbjct: 169 IVVHCSAGVGRTGTFIAIDILL 190
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 30.2 bits (68), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 501 RFWRGMFCRFENGVHPRENLADVLLATRDHSSSLDDHV 538
+ + G FC NGV PR LA LA S+ LD+H+
Sbjct: 455 KIFPGRFCNVTNGVTPRRWLA---LANPSLSAVLDEHI 489
>gnl|CDD|151980 pfam11544, Spc42p, Spindle pole body component Spc42p. Spc42p is a
42-kD component of the S.cerevisiae spindle body that
localises to the electron dense central region of the
SPB.Spc42p is a phosphoprotein which forms a polymeric
layer at the periphery of the SPB central plaque. This
functions during SPB duplication and also facilitates
the attachment of the SPB to the nuclear membrane.
Length = 74
Score = 27.5 bits (61), Expect = 5.6
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 535 DDHVKFLQKRIFSFKQSLSKKCELVKNGVRELKNNRIEEALPTPSLPPVENKPDNNSVSR 594
+ ++ L I S + L K EL K +L+N +I L + +S+ +
Sbjct: 16 QEEIERLNVLIGSLRAKLIKYTELNKKLEDQLQNLQISNDLNKK-----LSDDRADSIFK 70
Query: 595 EES 597
E
Sbjct: 71 PER 73
>gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR;
Provisional.
Length = 284
Score = 29.2 bits (66), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 175 VMRSSLAKLIETCEANSPSVNSFLSGLDSSGW 206
+ SS+A L + + P+VN F LD+ G+
Sbjct: 32 AIHSSIATLAKMANVSEPTVNRFCRSLDTKGF 63
>gnl|CDD|216405 pfam01274, Malate_synthase, Malate synthase.
Length = 517
Score = 29.6 bits (67), Expect = 7.5
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 14/75 (18%)
Query: 488 PDFIRPDL-SPQNIRFWRGMFCRFENGVH-PRENL-ADVLLATRDHSSSLD-------DH 537
P F P + S W +F R E+ + PR + A VL+ T + +D DH
Sbjct: 204 PYFYLPKMESHLEAALWNDVFNRAEDYLGIPRGTIKATVLIETLPAAFQMDEIIYELRDH 263
Query: 538 VKFLQ----KRIFSF 548
L IFS
Sbjct: 264 SAGLNCGRWDYIFSE 278
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 29.7 bits (66), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 692 TRKYHCFKCGDVLCLNCIGDRSQ 714
TR +HC CG LC+ CI R+
Sbjct: 479 TRAHHCRSCGIRLCVFCITKRAH 501
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,886,483
Number of extensions: 3703657
Number of successful extensions: 3110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3107
Number of HSP's successfully gapped: 36
Length of query: 738
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 634
Effective length of database: 6,324,786
Effective search space: 4009914324
Effective search space used: 4009914324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)