RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11381
(738 letters)
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 257 bits (656), Expect = 4e-77
Identities = 120/250 (48%), Positives = 160/250 (64%), Gaps = 3/250 (1%)
Query: 53 KLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGFS-A 111
+LCDTYP + VP + L + FRS+GR+PVL+++H +QA I RCSQP+ G S
Sbjct: 166 ELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGK 225
Query: 112 RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIE 171
R EDE+ L I+ +N S+ +++ D RP +NA+AN+A G GYE+E+ Y+N + F I
Sbjct: 226 RSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIH 285
Query: 172 NIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAI-VEGVSV 230
NIHVMR SL KL E + +LS L+S+ WL HIK+ L A IA + SV
Sbjct: 286 NIHVMRESLRKLKEIVY-PNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSV 344
Query: 231 VVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDPRE 290
VVH SDGWDRT Q+ SLA LMLD YYRTI+GF+ L+EK+WLSFGH+F R GH + +
Sbjct: 345 VVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHAD 404
Query: 291 ALIEKDWLSF 300
A +L F
Sbjct: 405 ADRSPVFLQF 414
Score = 67.2 bits (163), Expect = 9e-12
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 458 DLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGMFCRFENGVHPR 517
+L + T SLW Y+ +++ED+ NPLY + P S +++ W G + R+ +PR
Sbjct: 463 NLPKRTVSLWSYINSQLEDFTNPLYGSY-SNHVLYPVASMRHLELWVGYYIRW----NPR 517
Query: 518 ENLAD 522
+
Sbjct: 518 AAALE 522
Score = 60.3 bits (145), Expect = 1e-09
Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 39/144 (27%)
Query: 317 EILLMHIASIERGPLSTL----GSPLIIRCKTFLSVTFVI-PRERECYDIYVTLQKLSRP 371
+ L I +E+ ++ L CK ++ F P R I+ L K + P
Sbjct: 57 DASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFP 116
Query: 372 EPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSL 431
+ L+ F Y E GW +
Sbjct: 117 -------------------------------VSNNLPLFAFEY---KEVFPENGWKLYDP 142
Query: 432 EQEFKRMQVPNDEWCLTNLNKNYE 455
E++R +PN+ W +T +N+ YE
Sbjct: 143 LLEYRRQGIPNESWRITKINERYE 166
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 252 bits (643), Expect = 2e-75
Identities = 165/237 (69%), Positives = 191/237 (80%), Gaps = 1/237 (0%)
Query: 53 KLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGFSAR 112
K+C+TYPR +YVP A+ I++GSSKFRSKGR PVL+Y H+ +A ICRCSQPLSGFSAR
Sbjct: 154 KICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSAR 213
Query: 113 CLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIEN 172
CLEDE LL I + NP + +MYV+DTRP++NAMANRAAGKGYENE+ Y NI+F F GIEN
Sbjct: 214 CLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIEN 273
Query: 173 IHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAI-VEGVSVV 231
IHVMRSSL KL+E SVN F SGL+SSGWLRHIK +D A F+A+AI VE SV+
Sbjct: 274 IHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSGWLRHIKAVMDAAVFLAKAITVENASVL 333
Query: 232 VHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDP 288
VHCSDGWDRT QVCSL SL+LD YYRTIKGF LIEKDW+SFGHKF +RCG L GDP
Sbjct: 334 VHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDP 390
Score = 92.6 bits (229), Expect = 8e-20
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 33/143 (23%)
Query: 314 DPREILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEP 373
IL HIAS+E+ L+T G PL+I+CK F +V F++PRER+C+DIY +L +LS+
Sbjct: 44 KETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSKQA- 102
Query: 374 KKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTT-ESPKSYGWDFFSLE 432
E+LY F+Y +S + GW L
Sbjct: 103 -------------------------------KYEDLYAFSYNPKQNDSERLQGWQLIDLA 131
Query: 433 QEFKRMQVPNDEWCLTNLNKNYE 455
+E+KRM VPN W L++ N++Y+
Sbjct: 132 EEYKRMGVPNSHWQLSDANRDYK 154
Score = 72.6 bits (177), Expect = 2e-13
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 458 DLSENTYSLWGYMANRMEDYINPLYSPDAHPD-FIRPDLSPQNIRFWRGMFCRFENGVHP 516
L E TYSLW ++ + Y+NPLYS ++H + P+ N +FWR M+ +F+ H
Sbjct: 449 KLKEKTYSLWPFLLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTAHH 508
Query: 517 REN 519
+
Sbjct: 509 HHH 511
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 252 bits (643), Expect = 4e-74
Identities = 120/250 (48%), Positives = 160/250 (64%), Gaps = 3/250 (1%)
Query: 53 KLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGFSA- 111
+LCDTYP + VP + L + FRS+GR+PVL+++H +QA I RCSQP+ G S
Sbjct: 238 ELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGK 297
Query: 112 RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIE 171
R EDE+ L I+ +N S+ +++ D RP +NA+AN+A G GYE+E+ Y+N + F I
Sbjct: 298 RSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIH 357
Query: 172 NIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAI-VEGVSV 230
NIHVMR SL KL E + +LS L+S+ WL HIK+ L A IA + SV
Sbjct: 358 NIHVMRESLRKLKEIVY-PNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSV 416
Query: 231 VVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDPRE 290
VVH SDGWDRT Q+ SLA LMLD YYRTI+GF+ L+EK+WLSFGH+F R GH + +
Sbjct: 417 VVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHAD 476
Query: 291 ALIEKDWLSF 300
A +L F
Sbjct: 477 ADRSPVFLQF 486
Score = 90.4 bits (223), Expect = 6e-19
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 447 LTNLNKNYESGDLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGM 506
L N + +L + T SLW Y+ +++ED+ NPLY + P S +++ W G
Sbjct: 524 LCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSY-SNHVLYPVASMRHLELWVGY 582
Query: 507 FCRFENGVHPRENLADVLLATRDHSSSLDDHVKFLQKRIFSFKQSLSKKC 556
+ R+ + P+E + + + L V+ LQ+ I + S S++
Sbjct: 583 YIRWNPRMKPQEPIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERA 632
Score = 60.8 bits (146), Expect = 9e-10
Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 39/144 (27%)
Query: 317 EILLMHIASIERGPLSTL----GSPLIIRCKTFLSVTFVI-PRERECYDIYVTLQKLSRP 371
+ L I +E+ ++ L CK ++ F P R I+ L K + P
Sbjct: 129 DASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFP 188
Query: 372 EPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSL 431
+ L+ F Y E GW +
Sbjct: 189 -------------------------------VSNNLPLFAFEY---KEVFPENGWKLYDP 214
Query: 432 EQEFKRMQVPNDEWCLTNLNKNYE 455
E++R +PN+ W +T +N+ YE
Sbjct: 215 LLEYRRQGIPNESWRITKINERYE 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 8e-10
Identities = 92/555 (16%), Positives = 154/555 (27%), Gaps = 218/555 (39%)
Query: 295 KDWLSFGHKFTDRCGHLAGD-----PREIL---LMHIAS-IERGPLSTLGSPL--IIRC- 342
++ F + A D P E++ L +++S +E + L +
Sbjct: 34 QE--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 343 -KTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRRE--------------PYPEPP 387
+L DI+ KL + L + +E P+ +
Sbjct: 92 ENCYLEGN----------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 388 VCKSSVIPTRPQRLLKIH------------IEEL---YCFTYTSTTESPKSYGWDFFSLE 432
S++ + ++ EEL Y TY D
Sbjct: 142 --NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TYHVLVG-------DLIKFS 191
Query: 433 QEFKRMQVPNDEWCLTNL-------NKNYESG-DLSENTYSLWGYMANRMEDYINPLYSP 484
E L+ L K + G ++ E W L +P
Sbjct: 192 AE-----------TLSELIRTTLDAEKVFTQGLNILE-----W-------------LENP 222
Query: 485 DAHPD---FIRPDLS-P-----QNIRFWRGMFCRFENGVHPRENLADVLLATRDHSSSLD 535
PD + +S P Q + + G P E R +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVV--TAK-LLGFTPGE--------LRSYLKGAT 271
Query: 536 DHVKFLQKRIF--------SFKQSLSKKCE-LVKNGVRELKNNRIEEALPTPSLPPVENK 586
H + L + SF S+ K L GVR EA P SLPP
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR------CYEAYPNTSLPP---- 321
Query: 587 PDNNSVSREESDLSVPPVEKKPSDKINESLLSTRLSLSSLS-EETEGRRKVENGQHPLNP 645
S+ + S+ E PS +LS +S+L+ E+ + N P
Sbjct: 322 ----SILED----SLENNEGVPS-----PMLS----ISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 646 -------NSD----VTCDYECNG-IEAL--LDEEINSIAIDWKPVVNINQCQCSTPFDHF 691
N V+ G ++L L+ + K ++Q + PF
Sbjct: 365 QVEISLVNGAKNLVVS------GPPQSLYGLNLTLRKA----KAPSGLDQSR--IPFSE- 411
Query: 692 TRK-------------YHC--------FKCGDVLCLNCIGDRSQL--PGHLTRT------ 722
RK +H D++ N + + P + T
Sbjct: 412 -RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 723 --DSI-PSIIEIITQ 734
SI I++ I +
Sbjct: 471 LSGSISERIVDCIIR 485
Score = 59.7 bits (144), Expect = 3e-09
Identities = 109/647 (16%), Positives = 185/647 (28%), Gaps = 242/647 (37%)
Query: 16 AYERLVEKFKEIDVNASRETVVKKVNSLRSVYPKEFAKLCDTYPRFI-YV-------PTS 67
+L E+F +I + + + A+L +F+ YV
Sbjct: 29 IASQLQEQFNKILPEPTEGFAAD--DEPTTP-----AEL---VGKFLGYVSSLVEPSKVG 78
Query: 68 ATTSILLGS-SKFRSKGRLPVLTYLHRSN-QAVICRCSQPLSGFSARCLEDEQLLNCILR 125
+L ++F + YL ++ A+ + Q + E +++
Sbjct: 79 QFDQVLNLCLTEFEN-------CYLEGNDIHALAAKLLQENDTTLVKTKE-------LIK 124
Query: 126 TNPGSNFMY----VVDTRPRINAMAN---RAA------------GKG----YENE--NFY 160
Y ++ RP + RA G+G Y E + Y
Sbjct: 125 N-------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 161 ENIKFHFFGIENIHVMRSSLAKLIETCEANSPSVNSFLS-GLDSSGWLRHIKVTLDTAWF 219
+ +H + I +L++LI T + + GL+ WL + T D +
Sbjct: 178 Q--TYHVLVGDLIKFSAETLSELIRT----TLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 220 IAQAIVEGVSVVVHCSDGWDRTVQVCSLASLMLDPYYRTIK--GF--------------- 262
++ +S + + V LA Y T K GF
Sbjct: 232 LSIP----ISCPL---------IGVIQLAH-----YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 263 -QALI-------EKDWLSF---GHKFID-------RCGHLVGDPREAL---IEKDWLSFG 301
Q L+ W SF K I RC + P +L I +D L
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEAY-PNTSLPPSILEDSLENN 331
Query: 302 HKFTDRCGH----LA--GDPREILLMHIASI-ERGPLSTLGSPLIIRCKTFLSVT----- 349
G L+ +E + ++ P + +S+
Sbjct: 332 E------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK---------QVEISLVNGAKN 376
Query: 350 FVI---PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHI 406
V+ P+ +L L+ LR+ + P S IP +R LK
Sbjct: 377 LVVSGPPQ---------SLYGLNL----TLRKAK----APSGLDQSRIPFS-ERKLKFSN 418
Query: 407 EELYCFTYTSTTESPKSYGWDFFS------LEQEFKRMQVPNDEWCLTNLN---KNYESG 457
L SP F S + K + N + ++ + G
Sbjct: 419 RFL-------PVASP------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 458 -DLSENTYSLWGYMANRMEDYI--NPLYSPDAHP-------DF---IRPDLSPQNIRFWR 504
DL + S+ + R+ D I P+ DF L R
Sbjct: 466 SDLRVLSGSI----SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 505 GMFCRFENGVHPRENLADVLLA-TRDHSSSLDDHVKFLQKRIFSFKQ 550
G GV V++A T D + D + FKQ
Sbjct: 522 GT------GVR-------VIVAGTLDINPDDD----------YGFKQ 545
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide
binding, zinc binding, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 84
Score = 47.2 bits (112), Expect = 5e-07
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 667 NSIAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
+S + P N C CS F ++ C CG+ C C +
Sbjct: 2 SSGSSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKS 52
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 48.4 bits (115), Expect = 5e-07
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 659 EALLDEEINSIAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPG 717
++L + ++ W + C C F R++HC +CG++ C C + P
Sbjct: 49 QSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 45.1 bits (107), Expect = 2e-06
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 672 DWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
W+ + C C F R++HC CG VLC +C R+ +P
Sbjct: 14 YWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIP 59
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics
consortium, SGC, lipid BIND protein, transport protein;
1.09A {Homo sapiens}
Length = 90
Score = 44.8 bits (106), Expect = 4e-06
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 672 DWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPG 717
W P C C F R++HC CG V C C + +L
Sbjct: 13 TWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQY 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 7e-06
Identities = 88/630 (13%), Positives = 173/630 (27%), Gaps = 183/630 (29%)
Query: 10 RDKKGEAYERLVEKFKEIDVNASRETVVKKVNSLRSVYPKEFAKLCDTYPRFIYVPTSAT 69
K+ E ++ VE+ I+ Y F+
Sbjct: 72 LSKQEEMVQKFVEEVLRIN------------------YK------------FLM------ 95
Query: 70 TSILLGSSKFRSKGRLPVL-TYLHRSNQAVICRCSQPLSGFS-ARCLEDEQLLNCILRTN 127
S +++ R P + T ++ + + +Q + ++ +R +L +L
Sbjct: 96 -------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 128 PGSNFMYVVDTRPRINAMANRAAGK------GYENENFYENIKFHFFGI--------ENI 173
P V+ I+ + +GK + + F F + E +
Sbjct: 149 PAK---NVL-----IDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 174 HVMRSSLAKLIET--CEANSPSVNSFLSGLDSSGWLRHIKVT---------LDTAWFIAQ 222
M L I+ + S N L LR + + L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NA 256
Query: 223 AIVEGVSVVVHCSDGWDRTV------QVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHK 276
+ + C + + QV S + L + S K
Sbjct: 257 KAWNAFN--LSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 277 FID-RCGHLVGDPREALIEKDWLSFGHKFTDRCGHLAGDPREILLMHIASIERGPLSTLG 335
++D R L PRE L +PR + + IA R L+T
Sbjct: 310 YLDCRPQDL---PREV-------------------LTTNPRRLSI--IAESIRDGLATWD 345
Query: 336 SPLIIRCKTF-----LSVTFVIPRE-RECY--------DIYVTLQKLSRPEPKKLRRRRE 381
+ + C S+ + P E R+ + ++ LS +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-----IWFDVI 400
Query: 382 PYPEPPV----CKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKR 437
V K S++ +P+ I I +Y E + ++L +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKE-STISIPSIY-LELKVKLE-------NEYALHRSIVD 451
Query: 438 MQVPNDEWCLTNLNKNYESGDLSENTYSLW--GY-MAN-RMEDYINPLYSPDAHPDFIRP 493
+ +L Y Y G+ + N + + DF
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQ------YFYSHIGHHLKNIEHPERMTLF--RMVFLDF--- 500
Query: 494 DLSPQNIRFWRGMFCRFENGVHPRENLADVLLATR-------DHSSSLDDHVKFLQKRIF 546
RF + ++ + L + D+ + V + +
Sbjct: 501 -------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 547 SFKQSL--SKKCELVKNGVRELKNNRIEEA 574
+++L SK +L++ + EEA
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 40.6 bits (94), Expect = 0.002
Identities = 76/554 (13%), Positives = 149/554 (26%), Gaps = 161/554 (29%)
Query: 170 IENIHVMRSSLAK---LIET-CEANSPSVNSFLSGLDSS--GWL------RHIKVTLDTA 217
I++I + + +++ L T V F+ + +L + ++ T
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 218 WFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM-LDPYYRTIKGFQALIEKDWLS---- 272
+I Q D QV + ++ L PY + + L +
Sbjct: 111 MYIEQ------------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 273 FGHKFIDRCGH--LVGDP-REALIEKD------WLSFGHKFTDR---------CGHL--- 311
G G + D ++ WL+ + + +
Sbjct: 159 LG------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 312 ---AGDPREILLMHIASIERGPLSTLGSP-----LII---------------RCKTFL-- 346
D + + I SI+ L S L++ CK L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 347 ---SVTFVIPRERECYDIYVTLQK-LSRPEPKKLRRR---REPYPEPP-VCKS-----SV 393
VT + + L+ E K L + P P V + S+
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 394 I-------PTRPQRLLKIHIEEL-----YCFTYTSTTESPKSYGWDFFSLEQEFKRMQVP 441
I ++ ++L E K + +P
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAH---IP 388
Query: 442 NDE----WC----------LTNL-NKNYESGDLSENTYSLWG-YMANRMEDYINPLYSPD 485
W + L + E+T S+ Y+ +++
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK----LENEYA 444
Query: 486 AHPDFIR----------PDLSPQNIRFWRGMFCRFENGVHPRENLADVLLATRDHSSS-- 533
H + DL P F G H L ++ R
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPY---LDQYFYSHI-GHH----LKNIEHPERMTLFRMV 496
Query: 534 -LDDHVKFLQKRIFSFKQSLSKKCELVKNGVRELKN--NRIEEALPTPS--LPPVEN--- 585
LD FL+++I + + ++ N +++LK I + P + + +
Sbjct: 497 FLDFR--FLEQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 586 KPDNNSVSREESDL 599
K + N + + +DL
Sbjct: 554 KIEENLICSKYTDL 567
Score = 29.1 bits (64), Expect = 7.2
Identities = 41/279 (14%), Positives = 89/279 (31%), Gaps = 97/279 (34%)
Query: 484 PDAHPDFIRPDLSPQNIR-FWRGMFCRFENGVHPRENLADVLLATRDHSSSLDDHVKFLQ 542
F+ + ++++ + + + E D ++ ++D S
Sbjct: 23 SVFEDAFVD-NFDCKDVQDMPKSILSKEE---------IDHIIMSKDAVSGTL------- 65
Query: 543 KRIFSFKQSLSKKCELVKNGVRE-LKNN------RIEEALPTPSLPPVE-----NKPDNN 590
R+F LSK+ E+V+ V E L+ N I+ PS+ ++ N+
Sbjct: 66 -RLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 591 -------SVSREESDLSVPPVEK--------KPSDKI--------------NESLLSTR- 620
+VSR + P K +P+ + + LS +
Sbjct: 123 NQVFAKYNVSRLQ------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 621 ----------LSLSSLSEETEGRRKVENGQHPLNPNSDVTCDYECNGIEAL--LDEEINS 668
L+L + + ++ + ++PN D+ N + + E+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 669 IAIDWKP-----VV--NINQCQCSTPFDHFTRKYHCFKC 700
+ + KP +V N+ + F+ C
Sbjct: 237 L-LKSKPYENCLLVLLNVQNAKAWNAFN--------LSC 266
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics,
structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB:
2yqm_A
Length = 82
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 673 WKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
W C+ C F RK+HC CG + C C + LP +
Sbjct: 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY 59
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 44.0 bits (103), Expect = 1e-05
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 673 WKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
P C C F + RK C C C+ C P
Sbjct: 13 PSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP 57
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 42.0 bits (99), Expect = 3e-05
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 680 NQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
+ C CS F RK+HC CG V C + LP
Sbjct: 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDL 51
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Mus musculus} SCOP:
g.50.1.1
Length = 88
Score = 40.9 bits (96), Expect = 9e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 680 NQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPG 717
++C C+ F F ++Y C CG C C+ + +P
Sbjct: 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPR 48
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 42.3 bits (99), Expect = 4e-04
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 664 EEINSIAIDWKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
+ PV ++ C C F R++HC CG ++C NC ++ L
Sbjct: 360 VSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLK 413
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 41.3 bits (96), Expect = 5e-04
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 592 VSREESDLSVPPVEKKPSDKINESLLSTRLSLSSLSEETEGRRKVENGQHPLNPNSDVTC 651
++E ++ +E P + + + +L + + ++ + +++ L
Sbjct: 82 FTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFP 141
Query: 652 DYECNGIEALLDEEINSIAIDWKPVVNINQC-QCSTPFDHFTRKYHCFKCGDVLCLNCIG 710
+ + A + C +C F RK+HC CG V C C
Sbjct: 142 ELREA--------DAMFTADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193
Query: 711 DRSQLP 716
+ LP
Sbjct: 194 KQCPLP 199
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 40.5 bits (94), Expect = 8e-04
Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 593 SREESDLSVPPVEKKPSDKINESLLSTRLSLSSLSEETEGRRKVENGQHPLNPNSDVTCD 652
+++ + ++++ + +L + + + V++ + V +
Sbjct: 86 NKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPE 145
Query: 653 YECNGIEALLDEEINSIAIDWKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGD 711
++ + + A V+ +C C F TRK+HC CG + C C
Sbjct: 146 FKES--------DAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197
Query: 712 RSQLP 716
S +P
Sbjct: 198 YSTIP 202
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 39.4 bits (92), Expect = 0.003
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 663 DEEINSIAIDWKPVVNINQCQ-CSTPFDHFT-RKYHCFKCGDVLCLNCIG 710
+ N C+ C + Y C++C C+G
Sbjct: 341 NATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 34.6 bits (79), Expect = 0.14
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 663 DEEINSIAIDWKPVVNINQCQ-CSTPF-DHFTRKYHCFKCGDVLCLNCIG 710
+ N C+ C F + Y C +C C+G
Sbjct: 513 NATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLG 562
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.26
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 24/91 (26%)
Query: 486 AHPDFIRPDLSPQNIRFWRGMFCRFENGVHPRENLADVLLATRDHSSS--LDDHVKFLQK 543
A D + + P++IR WR E L D +S + + +K
Sbjct: 75 AQADRLTQE--PESIRKWR------------EEQ--RKRLQELDAASKVMEQEWREKAKK 118
Query: 544 RIFSFKQSLSKKCELVKNGVRELKNNRIEEA 574
+ + Q S++ E K NNRI +
Sbjct: 119 DLEEWNQRQSEQVEKNK------INNRIADK 143
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.27
Identities = 4/16 (25%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 473 RMEDYINPLYSPDAHP 488
+++ + LY+ D+ P
Sbjct: 24 KLQASLK-LYADDSAP 38
Score = 30.3 bits (67), Expect = 1.3
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 366 QKLSRPEPKKLRRRREPY-PE--PPVC-KSSV 393
Q L KKL+ + Y + P + K+++
Sbjct: 20 QAL-----KKLQASLKLYADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 5.6
Identities = 3/31 (9%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 588 DNNSVSREESDLSV--PPVEKKPSDKINESL 616
+ ++ + ++ L + + P+ I ++
Sbjct: 18 EKQALKKLQASLKLYAD--DSAPALAIKATM 46
Score = 28.0 bits (61), Expect = 6.4
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 29/48 (60%)
Query: 22 EKFKEIDVNASRETVVKKV-NSLRSVYPKEFAKLCDTYPRFIYVPTSA 68
EK + + KK+ SL KL Y SA
Sbjct: 18 EK-QAL----------KKLQASL---------KL--------YADDSA 37
Score = 28.0 bits (61), Expect = 6.8
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 12/38 (31%)
Query: 115 EDEQL--LNCILRTNPGSNFMYVVDTRPRINAMANRAA 150
E + L L L+ +Y D+ P A+A +A
Sbjct: 18 EKQALKKLQASLK-------LYADDSAP---ALAIKAT 45
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.28
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 663 DEEINSIAIDWKPVVNINQ-C-QCSTP-----FDHFTRKYHCFKCGDVLCLNCIGDRSQ 714
E I+ A P +NI C +C C CG VL + D
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV-DTRS 61
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 31.6 bits (72), Expect = 0.46
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 207 LRHIKVTLDTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
L ++ + F + G V VHC G R+ + A L+
Sbjct: 72 LANLHKGVQ---FALKYQALGQCVYVHCKAGRSRSATMV-AAYLI 112
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 30.3 bits (69), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
T FI ++ G V+VH + G R+ +A +M
Sbjct: 78 MTKEFIDGSLQMGGKVLVHGNAGISRSAAFV-IAYIM 113
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 31.1 bits (69), Expect = 1.4
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLMLD 253
+ + G V+ HC G DRT V +L +
Sbjct: 165 RVVTLLAAGRPVLTHCFAGKDRTGFVVALVLEAVG 199
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 29.8 bits (68), Expect = 1.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
DT FI++A G +VH G R+ +A M
Sbjct: 69 DTYKFISKAKKHGSKCLVHSKMGVSRSASTV-IAYAM 104
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 29.8 bits (68), Expect = 1.5
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ +I V+VH G R+ +C LA LM
Sbjct: 69 EAIEYIDAVKDCRGRVLVHSQAGISRSATIC-LAYLM 104
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 30.0 bits (68), Expect = 1.6
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
F+++ V+VH + G +R+ + LA LM
Sbjct: 100 FLSKCDQRNEPVLVHSAAGVNRSGAMI-LAYLM 131
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 29.9 bits (68), Expect = 1.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 207 LRHIKVTLDTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
RH K ++ FI + + G S +VHC G R+V + +A +M
Sbjct: 66 TRHFKESIK---FIHECRLRGESCLVHCLAGVSRSVTLV-IAYIM 106
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 29.5 bits (67), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ FI +A G +++HC G R+ + +A LM
Sbjct: 71 EAFEFIEEAHQCGKGLLIHCQAGVSRSATIV-IAYLM 106
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ FI + G + +VH G R+ + A +M
Sbjct: 72 ECINFIHCCRLNGGNCLVHSFAGISRSTTIV-TAYVM 107
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 29.5 bits (67), Expect = 2.2
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ FI ++I V++ G ++ + +A LM
Sbjct: 75 NAIKFIIRSIQRKEGVLIISGTGVNKAPAIV-IAFLM 110
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 29.5 bits (67), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ A+ +G S +V+C +G R+ VC A LM
Sbjct: 81 AMEAAVRDGGSCLVYCKNGRSRSAAVC-TAYLM 112
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 29.6 bits (67), Expect = 2.5
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
I ++ ++HC+ G R+ +C LA LM
Sbjct: 89 HIHSVEMKQGRTLLHCAAGVSRSAALC-LAYLM 120
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 29.7 bits (67), Expect = 2.7
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ FI +G V+VH G R+ +C +A LM
Sbjct: 71 EAIDFIDCVREKGGKVLVHSEAGISRSPTIC-MAYLM 106
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 29.2 bits (66), Expect = 2.9
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ FI +A G +++HC G R+ + +A LM
Sbjct: 75 EAFEFIEEAHQCGKGLLIHCQAGVSRSATIV-IAYLM 110
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 29.1 bits (66), Expect = 2.9
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 215 DTAWFIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
+ FI +A + V+VH + G R + + LM
Sbjct: 69 ECFEFIEEAKRKDGVVLVHSNAGVSRAAAIV-IGFLM 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 26.7 bits (59), Expect = 4.5
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 671 IDWKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNC 708
I + C C Y C C +V C++C
Sbjct: 7 IPLEEYNGERFCYGCQGELKDQHV-YVCAVCQNVFCVDC 44
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 29.3 bits (66), Expect = 5.0
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 276 KFIDRCGHLVGDPREALIEKDWLSFGHKFT 305
+ D H+V REAL + D G
Sbjct: 221 RLYDNYTHIVSQAREALQKGDLQRLGQLMN 250
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 28.9 bits (65), Expect = 5.0
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
I + + +VHC+ G R+ +C +A LM
Sbjct: 95 KIHSVSRKHGATLVHCAAGVSRSATLC-IAYLM 126
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 29.0 bits (64), Expect = 5.1
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 219 FIAQAIVE-GVSVVVHCSDGWDRTVQVCSLASLM 251
+ +A+ G VH + G R V L +
Sbjct: 97 TLYKAVKRNGGVTYVHSTAGMGRAPAVA-LTYMF 129
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 28.5 bits (64), Expect = 5.1
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLM 251
F+++ V+VHC+ G +R+ + LA LM
Sbjct: 117 FLSKCDQRNEPVLVHCAAGVNRSGAMI-LAYLM 148
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 28.9 bits (65), Expect = 6.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 230 VVVHCSDGWDRTVQVCSLASLM 251
+++HC DG +T C+L +L+
Sbjct: 542 LLIHCRDGSQQTGIFCALLNLL 563
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 27.7 bits (62), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRT 241
+ +A G +V VHC+ G+ RT
Sbjct: 81 IVDEANARGEAVGVHCALGFGRT 103
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 27.9 bits (62), Expect = 7.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRT 241
+ + E +VHC G RT
Sbjct: 81 IMKWLLSEKEGNLVHCVGGIGRT 103
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 28.9 bits (65), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 230 VVVHCSDGWDRTVQVCSLASLM 251
+ VHCS G RT +L+ ++
Sbjct: 503 ITVHCSAGVGRTGVFITLSIVL 524
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 28.5 bits (64), Expect = 8.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 230 VVVHCSDGWDRTVQVCSLASLM 251
+ VHCS G RT +L++++
Sbjct: 521 ITVHCSAGAGRTGTFIALSNIL 542
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 28.5 bits (64), Expect = 9.7
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 230 VVVHCSDGWDRTVQVCSLASLM 251
+VH G +C+L +L
Sbjct: 522 TIVHDEYGAVSAGMLCALTTLS 543
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,475,533
Number of extensions: 695837
Number of successful extensions: 1610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1581
Number of HSP's successfully gapped: 75
Length of query: 738
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 637
Effective length of database: 3,881,772
Effective search space: 2472688764
Effective search space used: 2472688764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)