RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11381
(738 letters)
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 297 bits (762), Expect = 1e-94
Identities = 118/241 (48%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 53 KLCDTYPRFIYVPTSATTSILLGSSKFRSKGRLPVLTYLHRSNQAVICRCSQPLSGFSA- 111
+LCDTYP + VP + L + FRS+GR+PVL+++H +QA I RCSQP+ G S
Sbjct: 37 ELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGK 96
Query: 112 RCLEDEQLLNCILRTNPGSNFMYVVDTRPRINAMANRAAGKGYENENFYENIKFHFFGIE 171
R EDE+ L I+ +N S+ +++ D RP +NA+AN+A G GYE+E+ Y+N + F I
Sbjct: 97 RSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIH 156
Query: 172 NIHVMRSSLAKLIETCEANSPSVNSFLSGLDSSGWLRHIKVTLDTAWFIAQAI-VEGVSV 230
NIHVMR SL KL E + +LS L+S+ WL HIK+ L A IA + SV
Sbjct: 157 NIHVMRESLRKLKEIV-YPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSV 215
Query: 231 VVHCSDGWDRTVQVCSLASLMLDPYYRTIKGFQALIEKDWLSFGHKFIDRCGHLVGDPRE 290
VVH SDGWDRT Q+ SLA LMLD YYRTI+GF+ L+EK+WLSFGH+F R GH + +
Sbjct: 216 VVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHAD 275
Query: 291 A 291
A
Sbjct: 276 A 276
Score = 63.1 bits (153), Expect = 4e-11
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 447 LTNLNKNYESGDLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRGM 506
L N + +L + T SLW Y+ +++ED+ NPLY + P S +++ W G
Sbjct: 323 LCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGS-YSNHVLYPVASMRHLELWVGY 381
Query: 507 FCRF 510
+ R+
Sbjct: 382 YIRW 385
Score = 51.5 bits (123), Expect = 2e-07
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 425 GWDFFSLEQEFKRMQVPNDEWCLTNLNKNYE 455
GW + E++R +PN+ W +T +N+ YE
Sbjct: 7 GWKLYDPLLEYRRQGIPNESWRITKINERYE 37
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 50.3 bits (120), Expect = 4e-08
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 36/104 (34%)
Query: 316 REILLMHIASIERGPLSTLGS----PLIIRCKTFLSVTFVI-PRERECYDIYVTLQKLSR 370
+ L I +E+ ++ L CK ++ F P R I+ L K +
Sbjct: 52 LDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAF 111
Query: 371 PEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTY 414
P + L+ F Y
Sbjct: 112 PVS-------------------------------NNLPLFAFEY 124
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 43.9 bits (103), Expect = 1e-06
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 673 WKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
W + C C F R++HC +CG++ C C + P
Sbjct: 2 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS 48
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 42.3 bits (99), Expect = 6e-06
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 672 DWKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
DW + C CS F RK+HC CG V C + LP
Sbjct: 1 DWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDL 45
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 42.0 bits (98), Expect = 1e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 680 NQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
++C C+ F F ++Y C CG C C+ + +P
Sbjct: 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRA 49
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 41.2 bits (96), Expect = 2e-05
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 670 AIDWKPVVNINQCQ-CSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLPGH 718
A +W C C F RK+HC CG V C C + LP +
Sbjct: 7 APNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKY 53
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 40.0 bits (93), Expect = 3e-05
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 683 QCSTPFDHFTRKYHCFKCGDVLCLNCIGDRSQLP 716
C F + RK C C C+ C P
Sbjct: 5 SCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP 38
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 34.7 bits (79), Expect = 0.008
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 678 NINQCQ-CSTPFDH-FTRKYHCFKCGDVLCLNCIGDRSQLPGHLTR 721
+N+C C + C C +C C + S H
Sbjct: 47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVW 92
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli
[TaxId: 562]}
Length = 60
Score = 28.8 bits (64), Expect = 0.29
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 644 NPNSDVTCDYECNGIEALLDEEINSIAIDWKPVVNI 679
N ++ V+ DYE LL E+ + I K +VN
Sbjct: 12 NNSNGVSVDYETETPMTLLVPEVAAEVI--KDLVNT 45
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 30.3 bits (68), Expect = 0.88
Identities = 13/89 (14%), Positives = 20/89 (22%), Gaps = 2/89 (2%)
Query: 620 RLSLSSLSEETEGRRKVENGQHPLNPNSDVTCDYECNGIEALLDEEINSIAIDWKPVVNI 679
R + L E + + + G A +E AI
Sbjct: 45 RYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPK-DERGSAADSEESPAIEAIHLLRKTFP 103
Query: 680 N-QCQCSTPFDHFTRKYHCFKCGDVLCLN 707
N C +T HC +
Sbjct: 104 NLLVACDVCLCPYTSHGHCGLLSENGAFR 132
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 256
Score = 29.7 bits (67), Expect = 1.1
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 480 PLYSPDAHPDFIRPDLSPQNIRFWRGMFCRFENGVHPRENLADVLLATRDHSSSLDDHVK 539
L + + +R D+ P + + +G LA+ + + DD V
Sbjct: 71 TLLAEGSD---LRTDI-PM--------YRIWRDGK-----LAEEVSDATQAWAEHDDMVA 113
Query: 540 FLQKRIFSFKQSL 552
FL F+F+ L
Sbjct: 114 FLIGCSFTFETPL 126
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 28.9 bits (64), Expect = 2.5
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 226 EGVSVVVHCSDGWDRTVQVCSLASLMLDP 254
+ + HC G RT + ++ +P
Sbjct: 211 QDAWLHFHCEAGVGRTTAFMVMTDMLKNP 239
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 27.5 bits (60), Expect = 5.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 219 FIAQAIVEGVSVVVHCSDGWDRTVQVCSLASLMLD 253
+ + G V+ HC G DRT V +L +
Sbjct: 142 RVVTLLAAGRPVLTHCFAGKDRTGFVVALVLEAVG 176
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp.
[TaxId: 6086]}
Length = 26
Score = 24.2 bits (52), Expect = 5.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 384 PEPPVCKSSVIPTRPQ 399
P PPVC + +PT PQ
Sbjct: 1 PCPPVCVAQCVPTCPQ 16
>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating
enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
Length = 196
Score = 27.3 bits (60), Expect = 5.9
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 465 SLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRFWRG--MFCRFENGVHPRENLAD 522
+++ +A D + L + ++ G M+ R EN HP L
Sbjct: 65 AIFSQVAVVGRDALEVLEGAEKLEIVNAEAPIQRHRCRDCGVHMYGRIENRDHPFYGLDF 124
Query: 523 VLLATRDHSSSL 534
V D
Sbjct: 125 VHTELSDEDGWS 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,886,514
Number of extensions: 142879
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 24
Length of query: 738
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 646
Effective length of database: 1,144,436
Effective search space: 739305656
Effective search space used: 739305656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)