BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11382
         (328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
          Length = 512

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 94/118 (79%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G   LIEKDW+SFGHKF++RCG L GDP+EVSPVF QFLEC W L+ QFPQAFEF+E 
Sbjct: 361 IKGFMVLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEA 420

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAH 294
           FLL + +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++    + Y+NPLYS ++H
Sbjct: 421 FLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESH 478



 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 34/168 (20%)

Query: 9   KPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFV 68
           K   GTL+LT T L+F D+  +KETWIL  HIAS+E+  L+T G PL+I+CK F +V F+
Sbjct: 23  KSLTGTLYLTATHLLFIDSH-QKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFI 81

Query: 69  IPRERECYDIYVTLQKLSXXXXXXXXXXXXXXXXXXVCKSSVIPTRPQRLLKIHIEELYC 128
           +PRER+C+DIY +L +LS                                 +   E+LY 
Sbjct: 82  VPRERDCHDIYNSLLQLSK--------------------------------QAKYEDLYA 109

Query: 129 FTYT-STTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
           F+Y     +S +  GW    L +E+KRM VPN  W L++ N++Y++ +
Sbjct: 110 FSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSHWQLSDANRDYKICE 157


>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
           Complexed With Phosphate
 pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
           (Mtmr2) Complexed With Phosphate
 pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
           (Mtmr2) Complexed With Phosphate
          Length = 657

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 6/118 (5%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREV----SPVFVQFLECSWQLSVQFPQAFE 232
           +RG   L+EK+WLSFGH+F  R GH  GD        SPVF+QF++C WQ++ QFP AFE
Sbjct: 445 IRGFEVLVEKEWLSFGHRFQLRVGH--GDKNHADADRSPVFLQFIDCVWQMTRQFPTAFE 502

Query: 233 FNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYS 290
           FNE FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY 
Sbjct: 503 FNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYG 560



 Score = 37.4 bits (85), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 142 GWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
           GW  +    E++R  +PN+ W +T +N+ YEL D
Sbjct: 208 GWKLYDPLLEYRRQGIPNESWRITKINERYELCD 241


>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
           Phosphatidylinositol 3-Phosphate
 pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
           Phosphatidylinositol 3,5-Bisphosphate
          Length = 528

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 6/118 (5%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREV----SPVFVQFLECSWQLSVQFPQAFE 232
           +RG   L+EK+WLSFGH+F  R GH  GD        SPVF+QF++C WQ++ QFP AFE
Sbjct: 373 IRGFEVLVEKEWLSFGHRFQLRVGH--GDKNHADADRSPVFLQFIDCVWQMTRQFPTAFE 430

Query: 233 FNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYS 290
           FNE FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY 
Sbjct: 431 FNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYG 488



 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 142 GWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
           GW  +    E++R  +PN+ W +T +N+ YEL D
Sbjct: 136 GWKLYDPLLEYRRQGIPNESWRITKINERYELCD 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,625,002
Number of Sequences: 62578
Number of extensions: 383972
Number of successful extensions: 587
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 7
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)