Query psy11382
Match_columns 328
No_of_seqs 199 out of 568
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 16:59:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1089|consensus 100.0 2E-80 4.4E-85 627.8 11.4 276 10-319 27-523 (573)
2 KOG4471|consensus 100.0 2.3E-79 5E-84 616.2 13.7 283 9-323 53-553 (717)
3 PF06602 Myotub-related: Myotu 100.0 1.6E-47 3.6E-52 374.1 3.5 83 181-263 267-352 (353)
4 KOG1090|consensus 100.0 1.8E-32 3.9E-37 287.4 5.3 127 179-313 1309-1452(1732)
5 smart00568 GRAM domain in gluc 96.9 0.0021 4.4E-08 47.4 5.1 40 7-46 18-60 (61)
6 PF02893 GRAM: GRAM domain; I 96.8 0.003 6.4E-08 47.6 5.6 39 8-46 27-68 (69)
7 PF11605 Vps36_ESCRT-II: Vacuo 95.4 0.032 7E-07 45.2 5.2 52 9-60 34-88 (89)
8 PF12578 3-PAP: Myotubularin-a 94.4 0.0089 1.9E-07 52.2 -0.5 47 281-327 59-106 (142)
9 cd01201 Neurobeachin Neurobeac 94.3 0.044 9.5E-07 46.2 3.4 76 7-82 14-105 (108)
10 PF14844 PH_BEACH: PH domain a 93.5 0.097 2.1E-06 42.6 4.0 76 7-82 13-105 (106)
11 PF14470 bPH_3: Bacterial PH d 93.1 0.78 1.7E-05 35.8 8.4 73 9-83 20-95 (96)
12 PF08000 bPH_1: Bacterial PH d 91.5 1.1 2.4E-05 38.5 8.0 76 10-85 39-122 (124)
13 KOG3294|consensus 90.3 0.24 5.3E-06 47.1 3.1 38 7-44 43-83 (261)
14 KOG2059|consensus 89.5 0.68 1.5E-05 50.0 5.9 76 13-89 589-667 (800)
15 cd00900 PH-like Pleckstrin hom 87.8 6.3 0.00014 28.9 8.8 76 8-84 17-98 (99)
16 cd01244 PH_RasGAP_CG9209 RAS_G 87.6 4.2 9E-05 33.4 8.2 70 14-84 25-97 (98)
17 smart00683 DM16 Repeats in sea 85.9 2.5 5.4E-05 31.6 5.4 38 7-44 15-53 (55)
18 PF03517 Voldacs: Regulator of 79.6 2.7 5.9E-05 36.2 4.1 76 13-88 1-105 (135)
19 cd01252 PH_cytohesin Cytohesin 78.3 15 0.00033 30.5 8.3 77 11-88 17-115 (125)
20 PF08567 TFIIH_BTF_p62_N: TFII 77.8 11 0.00023 29.8 6.7 54 9-62 10-67 (79)
21 PF07289 DUF1448: Protein of u 74.4 10 0.00023 37.9 7.1 79 6-85 168-250 (339)
22 PF08512 Rtt106: Histone chape 70.7 35 0.00077 27.5 8.3 74 8-84 8-87 (95)
23 KOG3238|consensus 62.2 7.7 0.00017 36.2 3.1 32 10-41 33-64 (216)
24 PF07289 DUF1448: Protein of u 56.5 42 0.00092 33.7 7.4 81 8-88 38-127 (339)
25 cd01257 PH_IRS Insulin recepto 53.6 32 0.0007 28.3 5.2 51 34-85 51-101 (101)
26 PF06058 DCP1: Dcp1-like decap 43.5 1.1E+02 0.0024 26.0 7.1 34 52-85 88-121 (122)
27 cd01260 PH_CNK Connector enhan 42.8 1.6E+02 0.0035 22.9 7.8 74 10-84 20-95 (96)
28 PF00169 PH: PH domain; Inter 40.6 1.5E+02 0.0032 21.9 8.9 79 7-86 14-103 (104)
29 cd01202 FRS2 Fibroblast growth 38.2 1.9E+02 0.004 24.4 7.3 67 9-88 19-94 (102)
30 PF03703 bPH_2: Bacterial PH d 29.0 1.9E+02 0.0041 21.2 5.6 67 15-81 6-79 (80)
31 PF02174 IRS: PTB domain (IRS- 26.0 3.6E+02 0.0077 21.8 8.9 64 10-86 21-95 (100)
32 cd01238 PH_Tec Tec pleckstrin 25.9 3.6E+02 0.0077 21.8 8.3 69 15-84 26-105 (106)
33 PF04283 CheF-arch: Chemotaxis 24.4 1.4E+02 0.003 28.0 5.0 39 6-46 21-59 (221)
34 cd01250 PH_centaurin Centaurin 23.6 3.2E+02 0.0069 20.4 7.0 73 10-84 16-93 (94)
35 PF12575 DUF3753: Protein of u 23.6 27 0.00059 27.6 0.0 20 243-262 2-21 (72)
36 cd01246 PH_oxysterol_bp Oxyste 20.9 3.6E+02 0.0078 20.0 6.8 73 9-84 14-90 (91)
No 1
>KOG1089|consensus
Probab=100.00 E-value=2e-80 Score=627.84 Aligned_cols=276 Identities=48% Similarity=0.874 Sum_probs=261.9
Q ss_pred ceeEEEEEeCceEEEEcCC----CCeeEEEecCccceEEeCCCC----CCCCcEEEEeccccEEEEEeCCCcchHHHHHH
Q psy11382 10 PFVGTLHLTTTALIFQDTD----CKKETWILLMHIASIERGPLS----TLGSPLIIRCKTFLSVTFVIPRERECYDIYVT 81 (328)
Q Consensus 10 ~~~GtL~lT~~hLiF~~~~----~~~e~wi~~~~I~~vek~~~s----~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~ 81 (328)
+..||||||+||+||.... ..+|+|+++.+|++|+|.+.+ ..|++|.|+||||++++|.|+++.+|++||.+
T Consensus 27 ~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~~~~~i~~~~e~~~v~~s 106 (573)
T KOG1089|consen 27 ALVGTLLLTTHHLIFKILQCRQANSKELWLLHDNIDSVEKDPSTFKNSTSGGPITLKCKDFRVISFLIPDDLECRDVYSS 106 (573)
T ss_pred cccceEEEeeceeeeeecccccccchhhccccchHhhhccCcceeeccccCCchhhhhhcceEEEEeccchHHHHHHHHH
Confidence 8999999999999999655 789999999999999999876 78999999999999999999999999999999
Q ss_pred HHHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCceecccccccCCCC-CCCCCCCcccCHHHHHHhcCC--C
Q psy11382 82 LQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTE-SPKSYGWDFFSLEQEFKRMQV--P 158 (328)
Q Consensus 82 l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyaF~~~~~~~-~~~~dGW~~fd~~~Ef~R~Gv--~ 158 (328)
|.+|+.+ .++..+|||+|.|... ....-||++|++++||+|||+ +
T Consensus 107 ~~~ls~~--------------------------------~~~~~ly~f~y~~~~~~~~~~~gw~~fd~~~ef~r~~~~~~ 154 (573)
T KOG1089|consen 107 IENLSNI--------------------------------DSILQLYAFFYAPNFQNLEDPSGWKMFDPESEFDRMGIRKG 154 (573)
T ss_pred HHHhccc--------------------------------CccccccccccCCcccccccccCceecchHhHHHHHhccCC
Confidence 9999999 8999999999999987 223339999999999999999 9
Q ss_pred CCCeEEeeccccccccccc-------------------------c-----------------------------------
Q psy11382 159 NDEWCLTNLNKNYELVDIL-------------------------R----------------------------------- 178 (328)
Q Consensus 159 ~d~WRiS~iN~~Y~lC~TY-------------------------R----------------------------------- 178 (328)
+..||+|+||++|++|+|| |
T Consensus 155 ~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~SqPL~g~~~~Rc~~DE~ 234 (573)
T KOG1089|consen 155 NSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRSSQPLSGFIAKRCREDEK 234 (573)
T ss_pred CCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeeecCCCcccccccchHHHH
Confidence 9999999999999999996 0
Q ss_pred --------------------------------------------------------------------------------
Q psy11382 179 -------------------------------------------------------------------------------- 178 (328)
Q Consensus 179 -------------------------------------------------------------------------------- 178 (328)
T Consensus 235 il~ai~k~~~~~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~kl~e~c~~~~~~~~~~l 314 (573)
T KOG1089|consen 235 ILEAILKANPNSKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSSLQKLLEVCNNFLPTMDKWL 314 (573)
T ss_pred HHHHHHhhCcCccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHHHHHHHHHHhccCccHHHHH
Confidence
Q ss_pred --------------------------------------------------------------Cc-ceEEeeeeecccccc
Q psy11382 179 --------------------------------------------------------------GG-TSLIEKDWLSFGHKF 195 (328)
Q Consensus 179 --------------------------------------------------------------~G-~~LIEKEWl~fGH~F 195 (328)
+| |+|||||||+|||||
T Consensus 315 s~LE~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi~~GH~F 394 (573)
T KOG1089|consen 315 SLLESSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWISFGHKF 394 (573)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHcCCcH
Confidence 34 999999999999999
Q ss_pred ccccCCC---CCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCccc
Q psy11382 196 TDRCGHL---AGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYS 272 (328)
Q Consensus 196 ~~R~gh~---~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T~S 272 (328)
.+||||. ...+++.||||+|||||||||++|||++|||||+||+.|++|+|||+|||||||||+||.++++..+|.|
T Consensus 395 ~~Rc~hl~~~~~~~ke~SPvF~qFLDcvwQl~~QfP~~FEFne~fLi~L~~h~ys~qfGtFl~NsekeR~e~~~~~kt~s 474 (573)
T KOG1089|consen 395 LDRCGHLAYNDGDSKEESPVFLQFLDCVWQLLEQFPCAFEFNERFLIKLHEHAYSSQFGTFLGNSEKERRELNLSEKTTS 474 (573)
T ss_pred HHhcCCcccccCCCcccCcHHHHHHHHHHHHHhhCCcceehhHHHHHHHHHhhHHhhhccccccCHHHHHHhccccccee
Confidence 9999999 5688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccccCCCCCCCCCCCceeccCCCCC----eeecCCCccccch
Q psy11382 273 LWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQN----IRYTPFLTVEKNY 319 (328)
Q Consensus 273 lW~~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~----l~lW~~~Y~R~~~ 319 (328)
+|+|+.+++++|+||+|+|. ..+++|+++|+. +++|.++|.||..
T Consensus 475 lW~~~~~~~~~f~Nply~~~--~~~~~~~l~P~~~~~~l~~W~~~y~r~d~ 523 (573)
T KOG1089|consen 475 LWDYLLPRKEEFVNPLYDPR--YLVIWPILAPQTATLSLQVWSSLYERWDE 523 (573)
T ss_pred hHHhHhhhhhhhcCcccccc--ccceeeccCcccccchhHHHHHHHHhhcc
Confidence 99999999999999999999 689999999999 9999999999986
No 2
>KOG4471|consensus
Probab=100.00 E-value=2.3e-79 Score=616.17 Aligned_cols=283 Identities=35% Similarity=0.638 Sum_probs=260.2
Q ss_pred CceeEEEEEeCceEEEEcCCCC--eeEEEecCccceEEeCCCCCCC---CcEEEEeccccEEEEEeCCCcchH-HHHHHH
Q psy11382 9 KPFVGTLHLTTTALIFQDTDCK--KETWILLMHIASIERGPLSTLG---SPLIIRCKTFLSVTFVIPRERECY-DIYVTL 82 (328)
Q Consensus 9 ~~~~GtL~lT~~hLiF~~~~~~--~e~wi~~~~I~~vek~~~s~~g---~~L~i~CKdfr~~~f~~~~~~~~~-~v~~~l 82 (328)
+++.|||.||||+|.|.+.++. -.+.||++.|++|||.++.+.| ++|+|.|||+|++++.|+++++|+ ++++.|
T Consensus 53 G~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L 132 (717)
T KOG4471|consen 53 GAVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERL 132 (717)
T ss_pred ccccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEEeccccceeeecCcccccHHHHHHHH
Confidence 4899999999999999985543 5789999999999999765445 689999999999999999999998 999999
Q ss_pred HHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCceecccccccCCCCC---CCCCCCcccCH--HHHHHhcCC
Q psy11382 83 QKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTES---PKSYGWDFFSL--EQEFKRMQV 157 (328)
Q Consensus 83 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyaF~~~~~~~~---~~~dGW~~fd~--~~Ef~R~Gv 157 (328)
.+.++|. .+.+.||||.|...+.. ....+|.+|+| ..|++|||+
T Consensus 133 ~~~~~p~-------------------------------~~~~~LFaF~~~~~~~~ng~e~~~~~~l~~P~~~~E~~r~g~ 181 (717)
T KOG4471|consen 133 NRAAFPP-------------------------------AKSEDLFAFAYHAWFPVNGSENGQHWKLYDPMFKNEYRRQGL 181 (717)
T ss_pred HHhcCCc-------------------------------ccchhhhhcccHhhcCCCCccccccccccChhhHhHHHhcCC
Confidence 9999992 77899999999888752 12234999999 999999999
Q ss_pred CCCCeEEeeccccccccccc-------------------------c----------------------------------
Q psy11382 158 PNDEWCLTNLNKNYELVDIL-------------------------R---------------------------------- 178 (328)
Q Consensus 158 ~~d~WRiS~iN~~Y~lC~TY-------------------------R---------------------------------- 178 (328)
+++.||||.||++|++|+|| |
T Consensus 182 ~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvlsw~Hp~sgAvIaRcSQPlVG~~g~Rn~~DE 261 (717)
T KOG4471|consen 182 PNESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLSWRHPESGAVIARCSQPLVGWSGKRNKDDE 261 (717)
T ss_pred ChhheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEEEEcCCCCceEEecCCcccchhcccccchH
Confidence 99999999999999999997 0
Q ss_pred --------------------------------------------------------------------------------
Q psy11382 179 -------------------------------------------------------------------------------- 178 (328)
Q Consensus 179 -------------------------------------------------------------------------------- 178 (328)
T Consensus 262 kll~~i~~a~A~~~e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~mR~s~~~~k~~~~~~~d~s 341 (717)
T KOG4471|consen 262 KLLQAIADANAQDGERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHVMRESLRKLKEICYPSPDES 341 (717)
T ss_pred HHHHHHHHhcccccccceEEEEecccchhhhhccccCCCccChhccccceEEEeecchhHHHHHHHHhHHHhhcCCCCch
Confidence
Q ss_pred -----------------------------------------------------------------Cc-ceEEeeeeeccc
Q psy11382 179 -----------------------------------------------------------------GG-TSLIEKDWLSFG 192 (328)
Q Consensus 179 -----------------------------------------------------------------~G-~~LIEKEWl~fG 192 (328)
+| |||||||||+||
T Consensus 342 ~wlS~Le~T~WL~Hi~~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFG 421 (717)
T KOG4471|consen 342 NWLSALESTHWLEHISSLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFG 421 (717)
T ss_pred hHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcC
Confidence 34 999999999999
Q ss_pred cccccccCCCCC--CCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCc
Q psy11382 193 HKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENT 270 (328)
Q Consensus 193 H~F~~R~gh~~~--~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T 270 (328)
|||++|+||++. +..++||||||||||||||++|||+||||||.||+.|+||+|||+|||||||||+||.+.++.++|
T Consensus 422 HkFadRvGhg~ns~~~ndrsPVFLQwlDcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFGTFLcN~ekeR~~~~i~~~t 501 (717)
T KOG4471|consen 422 HKFADRVGHGNNSHGDNDRSPVFLQWLDCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFGTFLCNSEKEREKEDITERT 501 (717)
T ss_pred ChhhhhcCCCCCcccccccCchhHHHHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhhhhhcCCHHHHhhcCcccch
Confidence 999999999965 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcccccccCCCCCCCCCCCceeccCCCCCeeecCCCccccchhHHh
Q psy11382 271 YSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQ 323 (328)
Q Consensus 271 ~SlW~~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~~~~~ 323 (328)
.|+|+|+++.++.|.||+|++.. ..||+|..+..++.+|.++|+||+++...
T Consensus 502 ~slWs~l~s~~~~f~Np~y~~~s-~~vL~Pvas~r~l~LW~~~ylrw~~~~~~ 553 (717)
T KOG4471|consen 502 GSLWSYLNSSLSNFCNPFYDPSS-NGVLYPVASVRALELWVQYYLRWNPPMEP 553 (717)
T ss_pred hhHHHHHhhcchhhcCcccCchh-cccccchHhhhchhhceeeeeccCCCCCC
Confidence 99999999999999999999997 69999999999999999999999987654
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=1.6e-47 Score=374.13 Aligned_cols=83 Identities=59% Similarity=1.049 Sum_probs=72.6
Q ss_pred ceEEeeeeeccccccccccCCC---CCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCc
Q psy11382 181 TSLIEKDWLSFGHKFTDRCGHL---AGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNC 257 (328)
Q Consensus 181 ~~LIEKEWl~fGH~F~~R~gh~---~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Ns 257 (328)
++||||||++|||||.+|+||. ....++.||||+|||||||||++|||++|||||.||++|+||+|||+||||||||
T Consensus 267 ~~LIeKeW~~fGH~F~~R~~~~~~~~~~~~~~sPvFl~FLDcV~ql~~q~P~~FEFne~~L~~l~~~~~s~~fgtFl~n~ 346 (353)
T PF06602_consen 267 QVLIEKEWISFGHPFADRCGHGSSSSSSSSERSPVFLQFLDCVWQLLRQFPTAFEFNESLLIFLADHSYSGRFGTFLFNS 346 (353)
T ss_dssp HHHHHHHTTTTT--HHHHHTTT--SSTTGCC---HHHHHHHHHHHHHHHSTTT-SB-HHHHHHHHHHHCCTSSTTT-SSS
T ss_pred HHHHHHHHHhcCcchhhhcCCcccccccccccccchhHHHHHHHHHHHhCCCceecCHHHHHHHHHHHhcCCCCccccCC
Confidence 9999999999999999999999 5578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11382 258 EKDRLD 263 (328)
Q Consensus 258 e~eR~~ 263 (328)
|+||.+
T Consensus 347 e~eR~~ 352 (353)
T PF06602_consen 347 EKEREE 352 (353)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999986
No 4
>KOG1090|consensus
Probab=99.97 E-value=1.8e-32 Score=287.36 Aligned_cols=127 Identities=40% Similarity=0.786 Sum_probs=114.0
Q ss_pred Cc-ceEEeeeeeccccccccccCCCCCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCc
Q psy11382 179 GG-TSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNC 257 (328)
Q Consensus 179 ~G-~~LIEKEWl~fGH~F~~R~gh~~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Ns 257 (328)
|| +||+||||++|||.| .|. ....||+|+||||||+|+.+|||.|||||.-||.+|++|..||+|-|||.||
T Consensus 1309 dGFrvLVEKEWLaFGHrF-Hr~------~~~fsPsFlqFLDcVhQi~~QfPmaFEFs~FYl~FLaYHsvs~rFRTFl~Dc 1381 (1732)
T KOG1090|consen 1309 DGFRVLVEKEWLAFGHRF-HRD------TETFSPSFLQFLDCVHQISQQFPMAFEFSYFYLSFLAYHSVSGRFRTFLLDC 1381 (1732)
T ss_pred cchhhhhhhhhhhhcchh-ccc------ccccCchHHHHHHHHHHHHHhccchhhhHHHHHHHHhhhccchhhhhhhccc
Confidence 45 999999999999999 553 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcc-------------CCcccchhhhhc---ccccccCCCCCCCCCCCceeccCCCCCeeecCCC
Q psy11382 258 EKDRLDLRLS-------------ENTYSLWGYMAN---RMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFL 313 (328)
Q Consensus 258 e~eR~~~~~~-------------~~T~SlW~~~~~---~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~ 313 (328)
|.||.+.++. -.|.|+|.||.. ....|.|-+|.+.. ..++.|..+..+|++|.-|
T Consensus 1382 e~eR~esg~~~~ek~er~~~p~nr~~~svweyI~r~~k~Tp~FyN~lYa~~~-s~ilrP~snV~~l~~W~fy 1452 (1732)
T KOG1090|consen 1382 EEERIESGLLYEEKGERRGQPLNRATISVWEYIDRLSKRTPAFYNYLYAPED-SEILRPYSNVSNLKVWDFY 1452 (1732)
T ss_pred cHHhhhhhhhHHhhccccCCCcccccchHHHHHHHhcccChhHHHHhhCcCC-cccccccCCccccceeccc
Confidence 9999988752 237899999973 35789999999986 6899999999999999754
No 5
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=96.89 E-value=0.0021 Score=47.35 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCCceeEEEEEeCceEEEEcCCCC--e-eEEEecCccceEEeC
Q psy11382 7 LRKPFVGTLHLTTTALIFQDTDCK--K-ETWILLMHIASIERG 46 (328)
Q Consensus 7 ~~~~~~GtL~lT~~hLiF~~~~~~--~-e~wi~~~~I~~vek~ 46 (328)
...+..|+||||++||.|.+...+ . .+-||+..|.+|||.
T Consensus 18 ~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 18 RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 346899999999999999984322 3 678999999999986
No 6
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=96.82 E-value=0.003 Score=47.64 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCceeEEEEEeCceEEEEcCCC-C-e-eEEEecCccceEEeC
Q psy11382 8 RKPFVGTLHLTTTALIFQDTDC-K-K-ETWILLMHIASIERG 46 (328)
Q Consensus 8 ~~~~~GtL~lT~~hLiF~~~~~-~-~-e~wi~~~~I~~vek~ 46 (328)
..+..|+||||++||.|.+... . . .+-||+..|.+|||.
T Consensus 27 ~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 27 KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 5589999999999999998322 2 2 588999999999985
No 7
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=95.39 E-value=0.032 Score=45.21 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=34.9
Q ss_pred CceeEEEEEeCceEEEEcCCC-C-eeEEEecCccceEEeCCCC-CCCCcEEEEec
Q psy11382 9 KPFVGTLHLTTTALIFQDTDC-K-KETWILLMHIASIERGPLS-TLGSPLIIRCK 60 (328)
Q Consensus 9 ~~~~GtL~lT~~hLiF~~~~~-~-~e~wi~~~~I~~vek~~~s-~~g~~L~i~CK 60 (328)
+-..|+|+||+|||||.+... . ..+-|++..|..+|...+- .+..-|.++.|
T Consensus 34 ~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~~sSpKI~l~l~ 88 (89)
T PF11605_consen 34 NFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFLKSSPKIILHLK 88 (89)
T ss_dssp T-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STTSSS-EEEEEES
T ss_pred cccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccccCCCCeEEEEec
Confidence 345899999999999997432 2 3689999999999865432 23345665543
No 8
>PF12578 3-PAP: Myotubularin-associated protein; InterPro: IPR022587 The proteins in this entry are found in eukaryotes, and are typically between 115 and 138 amino acids in length. This entry contains myotubularin-associated protein 12 (also known as the phosphatidylinositol-3 phosphate 3-phosphatase adapter subunit, 3-PAP). 3-PAP is a catalytically inactive member of the myotubularin gene family, which coprecipitates lipid phosphatidylinositol 3-phosphate-3-phosphatase activity from lysates of human platelets [].
Probab=94.45 E-value=0.0089 Score=52.21 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=37.1
Q ss_pred cccccCCCCC-CCCCCCceeccCCCCCeeecCCCccccchhHHhhccC
Q psy11382 281 MEDYINPLYS-PDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQKQNA 327 (328)
Q Consensus 281 ~~~f~Np~Y~-~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~~~~~~~~~ 327 (328)
.++|.+..+. |....++|.|.....+|++|+++|+||++.+-+.+|.
T Consensus 59 ~~~~~~~~~~~P~d~~~lL~P~~~~~~i~lW~qcYlRW~P~a~i~~gg 106 (142)
T PF12578_consen 59 SEQFFRDWFSKPADSHGLLLPLLSGPQIKLWSQCYLRWIPEAQIRGGG 106 (142)
T ss_pred hHhhccccccCCcccccccccccccccHHHHHHHHHccCcHHHccCCC
Confidence 4556666664 3233689999999999999999999999998776654
No 9
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=94.32 E-value=0.044 Score=46.19 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCCceeEEEEEeCceEEEEcCCCCe-------e-E--------EEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeC
Q psy11382 7 LRKPFVGTLHLTTTALIFQDTDCKK-------E-T--------WILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIP 70 (328)
Q Consensus 7 ~~~~~~GtL~lT~~hLiF~~~~~~~-------e-~--------wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~ 70 (328)
+...+.|+|.||+.||+|...+... + + -+++..|..|-+..---+...|+|.|.|=..+=|+|+
T Consensus 14 Pl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~~F~ 93 (108)
T cd01201 14 PGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSIFFAFP 93 (108)
T ss_pred EEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCceEEEEeC
Confidence 4456789999999999999632111 1 0 2334444444433222245789999999888899999
Q ss_pred CCcchHHHHHHH
Q psy11382 71 RERECYDIYVTL 82 (328)
Q Consensus 71 ~~~~~~~v~~~l 82 (328)
+.+..+.|..+|
T Consensus 94 ~~~~~k~vv~~l 105 (108)
T cd01201 94 DQNAVKKVVYAL 105 (108)
T ss_pred cHHHHHHHHhhc
Confidence 776666665443
No 10
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=93.53 E-value=0.097 Score=42.59 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=55.4
Q ss_pred CCCceeEEEEEeCceEEEEcC-----------------CCCeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEe
Q psy11382 7 LRKPFVGTLHLTTTALIFQDT-----------------DCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVI 69 (328)
Q Consensus 7 ~~~~~~GtL~lT~~hLiF~~~-----------------~~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~ 69 (328)
......|+|.||+.|++|.+. +..+..-+++..|..|.++.---+...|+|-.+|=+.+=|+|
T Consensus 13 ~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~~dg~s~f~~F 92 (106)
T PF14844_consen 13 PLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIFFSDGRSYFFNF 92 (106)
T ss_dssp TTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEEETTS-EEEEE-
T ss_pred eeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEEEcCCcEEEEEc
Confidence 445689999999999999854 112335578899999987643333567999999999999999
Q ss_pred CCCcchHHHHHHH
Q psy11382 70 PRERECYDIYVTL 82 (328)
Q Consensus 70 ~~~~~~~~v~~~l 82 (328)
++..++.++|..|
T Consensus 93 ~~~~~R~~v~~~l 105 (106)
T PF14844_consen 93 ESKKERDEVYNKL 105 (106)
T ss_dssp SSHHHHHHHHCCS
T ss_pred CCHHHHHHHHHhh
Confidence 9888888888654
No 11
>PF14470 bPH_3: Bacterial PH domain
Probab=93.08 E-value=0.78 Score=35.83 Aligned_cols=73 Identities=23% Similarity=0.227 Sum_probs=53.9
Q ss_pred CceeEEEEEeCceEEEEcCC---CCeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHHHHHH
Q psy11382 9 KPFVGTLHLTTTALIFQDTD---CKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQ 83 (328)
Q Consensus 9 ~~~~GtL~lT~~hLiF~~~~---~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~ 83 (328)
....|.|.+|+-||||...+ ...-.-|+|..|.+|+...+- .+..|.|.+ +=..+++.--+..+...+++.|+
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~ 95 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-NGEKIKIDNIQKGDVKEFYEYIK 95 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-CCEEEEEEEcCHHHHHHHHHHHh
Confidence 46789999999999999743 244568999999999966322 345689998 44666776335567778877775
No 12
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=91.49 E-value=1.1 Score=38.49 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=55.1
Q ss_pred ceeEEEEEeCceEEEEc----CCCCeeE-EEecCccceEEeCCCC--CCCCcEEEEecccc-EEEEEeCCCcchHHHHHH
Q psy11382 10 PFVGTLHLTTTALIFQD----TDCKKET-WILLMHIASIERGPLS--TLGSPLIIRCKTFL-SVTFVIPRERECYDIYVT 81 (328)
Q Consensus 10 ~~~GtL~lT~~hLiF~~----~~~~~e~-wi~~~~I~~vek~~~s--~~g~~L~i~CKdfr-~~~f~~~~~~~~~~v~~~ 81 (328)
.++..+++||.|||+.+ +..+.++ =|||..|.++.--... ...+.|.|.-..-. .+.+.|++..+..+++..
T Consensus 39 ~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~~~i~~~f~k~~di~~i~k~ 118 (124)
T PF08000_consen 39 LIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQGFPIEFEFKKKTDIYEIYKA 118 (124)
T ss_dssp ESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTESSEEEEEEGTTSHHHHHHHH
T ss_pred hhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCcEEEEEecCCCCCHHHHHHH
Confidence 45788999999999998 3344554 8999999988654321 12356666655543 355889999999999999
Q ss_pred HHHh
Q psy11382 82 LQKL 85 (328)
Q Consensus 82 l~~l 85 (328)
|.+.
T Consensus 119 L~~~ 122 (124)
T PF08000_consen 119 LAEY 122 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 13
>KOG3294|consensus
Probab=90.29 E-value=0.24 Score=47.11 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=28.6
Q ss_pred CCCceeEEEEEeCceEEEEcCCCC---eeEEEecCccceEE
Q psy11382 7 LRKPFVGTLHLTTTALIFQDTDCK---KETWILLMHIASIE 44 (328)
Q Consensus 7 ~~~~~~GtL~lT~~hLiF~~~~~~---~e~wi~~~~I~~ve 44 (328)
.....+||||||+||+||.+.+.+ +..-++...|..++
T Consensus 43 ~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~k 83 (261)
T KOG3294|consen 43 FKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVK 83 (261)
T ss_pred cccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhce
Confidence 456789999999999999985433 34567777777665
No 14
>KOG2059|consensus
Probab=89.53 E-value=0.68 Score=50.01 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=62.2
Q ss_pred EEEEEeCceEEEEc-CCCCeeEEEecCccceEEeCCCCCC--CCcEEEEeccccEEEEEeCCCcchHHHHHHHHHhcCCC
Q psy11382 13 GTLHLTTTALIFQD-TDCKKETWILLMHIASIERGPLSTL--GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPE 89 (328)
Q Consensus 13 GtL~lT~~hLiF~~-~~~~~e~wi~~~~I~~vek~~~s~~--g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~l~~p~ 89 (328)
--..||++||+|.- ++.....-||+.+|..|||+.-.+- ..-+.|.|-| |.+.+.-+...|+.+..+.|.+.+...
T Consensus 589 ryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d-rtly~Q~~n~vEandWldaL~kvs~~N 667 (800)
T KOG2059|consen 589 RYFRLTTEELSYAKSPGKQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD-RTLYVQAKNCVEANDWLDALRKVSCCN 667 (800)
T ss_pred eEEEeccceeEEecCCccCcccceeHHHHHHHHHhhhhccCCCceEEEEecC-cceeEecCCchHHHHHHHHHHHHhccC
Confidence 35789999999985 5566678999999999998753322 2468899999 888888888889999999999998873
No 15
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=87.82 E-value=6.3 Score=28.92 Aligned_cols=76 Identities=24% Similarity=0.183 Sum_probs=58.2
Q ss_pred CCceeEEEEEeCceEEEEcCCCCeeE---EEecCccceEEeCCCC-CCCCcEEEEecc--ccEEEEEeCCCcchHHHHHH
Q psy11382 8 RKPFVGTLHLTTTALIFQDTDCKKET---WILLMHIASIERGPLS-TLGSPLIIRCKT--FLSVTFVIPRERECYDIYVT 81 (328)
Q Consensus 8 ~~~~~GtL~lT~~hLiF~~~~~~~e~---wi~~~~I~~vek~~~s-~~g~~L~i~CKd--fr~~~f~~~~~~~~~~v~~~ 81 (328)
+......+.|++..|.+...+..... -+++..|. |+..+.. .....+.|.+++ .+.+.|..+++.++..+..+
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~a 95 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEA 95 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHH
Confidence 56788889999999999975543333 36777777 7765421 234678999997 99999999999999999888
Q ss_pred HHH
Q psy11382 82 LQK 84 (328)
Q Consensus 82 l~~ 84 (328)
|+.
T Consensus 96 l~~ 98 (99)
T cd00900 96 LQQ 98 (99)
T ss_pred Hhc
Confidence 864
No 16
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.60 E-value=4.2 Score=33.37 Aligned_cols=70 Identities=26% Similarity=0.306 Sum_probs=54.0
Q ss_pred EEEEeCceEEEEcC-CCCeeEEEecCccceEEeCCCCCC--CCcEEEEeccccEEEEEeCCCcchHHHHHHHHH
Q psy11382 14 TLHLTTTALIFQDT-DCKKETWILLMHIASIERGPLSTL--GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQK 84 (328)
Q Consensus 14 tL~lT~~hLiF~~~-~~~~e~wi~~~~I~~vek~~~s~~--g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~ 84 (328)
-..||+.+|.+... ....---|++..|..||..+.... ...+.|.+.| +.+-+..+++.|+.+..+.|++
T Consensus 25 wF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 25 YFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred EEEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCHHHHHHHHHHHhc
Confidence 47899999988753 333334799999999998764333 3678999977 8888888998899988888765
No 17
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=85.87 E-value=2.5 Score=31.62 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCCceeEEEEEeCceEEEEcCC-CCeeEEEecCccceEE
Q psy11382 7 LRKPFVGTLHLTTTALIFQDTD-CKKETWILLMHIASIE 44 (328)
Q Consensus 7 ~~~~~~GtL~lT~~hLiF~~~~-~~~e~wi~~~~I~~ve 44 (328)
....-.|+|++||-|+|+.+.. ..--+=|+|..|.++.
T Consensus 15 gn~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 15 GNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVR 53 (55)
T ss_pred CCCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEEE
Confidence 3455779999999999999854 3345778888888774
No 18
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=79.62 E-value=2.7 Score=36.18 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=41.7
Q ss_pred EEEEEeCceEEEEc-CCCCeeEEEecCccc--eEEeCCC-CCCCCcEEEEe---------------------ccccEEEE
Q psy11382 13 GTLHLTTTALIFQD-TDCKKETWILLMHIA--SIERGPL-STLGSPLIIRC---------------------KTFLSVTF 67 (328)
Q Consensus 13 GtL~lT~~hLiF~~-~~~~~e~wi~~~~I~--~vek~~~-s~~g~~L~i~C---------------------Kdfr~~~f 67 (328)
|+||||+-+|+|.+ ...+.-+-|+|+.|. .|.|.+. ......|.+.. -+...+.+
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld~~~~~~~~~~~~~~~~~~~~~~~~~~El 80 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLDSDLEEDEEGDDEDDEEDDEEDDESSVEL 80 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE----SS-SSS---S--S-S--S-SEEEE
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEecccCccccccccccccccccccccceEE
Confidence 89999999999999 567788999999664 5555432 22222333332 03445555
Q ss_pred Ee-CCC-cc--hHHHHHHHHHhcCC
Q psy11382 68 VI-PRE-RE--CYDIYVTLQKLSRP 88 (328)
Q Consensus 68 ~~-~~~-~~--~~~v~~~l~~l~~p 88 (328)
.| |.. .. ...+|++|.+.+.-
T Consensus 81 ~l~P~~~~~~~l~~if~Als~C~~L 105 (135)
T PF03517_consen 81 RLVPSDPSSDMLDEIFEALSECQEL 105 (135)
T ss_dssp EEEES-HHH--HHHHHHHHHHHHH-
T ss_pred EEecCcccchHHHHHHHHHHHHHHh
Confidence 44 333 33 88999999887543
No 19
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.29 E-value=15 Score=30.53 Aligned_cols=77 Identities=10% Similarity=-0.002 Sum_probs=48.7
Q ss_pred eeEEEEEeCceEEEEcCC--CCeeEEEecCccceEEeCCCCCCCCcEEEEeccc--------------------cEEEEE
Q psy11382 11 FVGTLHLTTTALIFQDTD--CKKETWILLMHIASIERGPLSTLGSPLIIRCKTF--------------------LSVTFV 68 (328)
Q Consensus 11 ~~GtL~lT~~hLiF~~~~--~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdf--------------------r~~~f~ 68 (328)
..=-+.|+...|.|...+ ....--|++..+. |+..........+.|.+.+- +.+.|.
T Consensus 17 kkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 95 (125)
T cd01252 17 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENVS-IREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRIS 95 (125)
T ss_pred EeEEEEEECCEEEEEcCCCCCCceEEEECCCcE-EEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEE
Confidence 344467889999888632 2334567777543 54443222223355555443 455566
Q ss_pred eCCCcchHHHHHHHHHhcCC
Q psy11382 69 IPRERECYDIYVTLQKLSRP 88 (328)
Q Consensus 69 ~~~~~~~~~v~~~l~~l~~p 88 (328)
-.+++++.+...+|++...+
T Consensus 96 A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 96 AANDEEMDEWIKSIKASISP 115 (125)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 68888999999999998777
No 20
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=77.77 E-value=11 Score=29.83 Aligned_cols=54 Identities=28% Similarity=0.211 Sum_probs=38.2
Q ss_pred CceeEEEEEeCce--EEEEcC--CCCeeEEEecCccceEEeCCCCCCCCcEEEEeccc
Q psy11382 9 KPFVGTLHLTTTA--LIFQDT--DCKKETWILLMHIASIERGPLSTLGSPLIIRCKTF 62 (328)
Q Consensus 9 ~~~~GtL~lT~~h--LiF~~~--~~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdf 62 (328)
+...|+|+|++-| +++... +....+-|++..|.....-+.++.--.|.|.-|+=
T Consensus 10 KK~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 10 KKKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDD 67 (79)
T ss_dssp TTEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTS
T ss_pred EcCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecC
Confidence 5678999999999 999973 33335899999999987665444334566666653
No 21
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=74.40 E-value=10 Score=37.90 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=54.5
Q ss_pred CCCCceeEEEEEeCceEEEEcCC-CCeeEEEecCccceEEeCCCCCCCCcEEEEeccc---cEEEEEeCCCcchHHHHHH
Q psy11382 6 DLRKPFVGTLHLTTTALIFQDTD-CKKETWILLMHIASIERGPLSTLGSPLIIRCKTF---LSVTFVIPRERECYDIYVT 81 (328)
Q Consensus 6 ~~~~~~~GtL~lT~~hLiF~~~~-~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdf---r~~~f~~~~~~~~~~v~~~ 81 (328)
+...+.-||+++||.|+++.++- ..--+=|||-.|.+|-.+. |.-|..|.|..-.. =++-|.++..+.-.++|..
T Consensus 168 s~dqGnLGtfivTNvRiVW~A~~ne~fNVSiPylqi~~i~ir~-SKfG~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KE 246 (339)
T PF07289_consen 168 SSDQGNLGTFIVTNVRIVWFADMNESFNVSIPYLQIKSIRIRD-SKFGPALVIETSESSGGYVLGFRVDPEERLQELFKE 246 (339)
T ss_pred ccCCCceeEEEEeeeEEEEEccCCccccccchHhhheeeeeec-cccceEEEEEEeccCCcEEEEEEcCHHHHHHHHHHH
Confidence 44566779999999999999832 2233678999999997553 45565666654332 2445556655677888888
Q ss_pred HHHh
Q psy11382 82 LQKL 85 (328)
Q Consensus 82 l~~l 85 (328)
|++|
T Consensus 247 i~sL 250 (339)
T PF07289_consen 247 IQSL 250 (339)
T ss_pred HHHH
Confidence 8877
No 22
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=70.69 E-value=35 Score=27.53 Aligned_cols=74 Identities=27% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCceeEEEEEeCceEEEEcCCCCeeEEEecCccceEEe--C-CCCCCCCcEEEEecc--ccEEEEE-eCCCcchHHHHHH
Q psy11382 8 RKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIER--G-PLSTLGSPLIIRCKT--FLSVTFV-IPRERECYDIYVT 81 (328)
Q Consensus 8 ~~~~~GtL~lT~~hLiF~~~~~~~e~wi~~~~I~~vek--~-~~s~~g~~L~i~CKd--fr~~~f~-~~~~~~~~~v~~~ 81 (328)
.+...|.|+.+...|+|-.+ +.-+.|++..|+.|+- . ..+++..-|.|..|| =..++|. |+++ +...|.+-
T Consensus 8 ~ka~~g~L~pl~~~l~f~~~--kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~-e~~~l~~~ 84 (95)
T PF08512_consen 8 YKANEGFLYPLEKCLLFGLE--KPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDRE-EYDNLKDF 84 (95)
T ss_dssp ETTEEEEEEEESSEEEEECS--SS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGG-GHHHHHHH
T ss_pred ccccCEEEEEccceEEEecC--CCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHH-HHHHHHHH
Confidence 46789999999999999432 3468999999999974 3 445555789999999 4666775 4543 45555555
Q ss_pred HHH
Q psy11382 82 LQK 84 (328)
Q Consensus 82 l~~ 84 (328)
|.+
T Consensus 85 l~~ 87 (95)
T PF08512_consen 85 LKS 87 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>KOG3238|consensus
Probab=62.22 E-value=7.7 Score=36.22 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=23.8
Q ss_pred ceeEEEEEeCceEEEEcCCCCeeEEEecCccc
Q psy11382 10 PFVGTLHLTTTALIFQDTDCKKETWILLMHIA 41 (328)
Q Consensus 10 ~~~GtL~lT~~hLiF~~~~~~~e~wi~~~~I~ 41 (328)
--.||||||.-+||+.+.+..+-+=|-++.|+
T Consensus 33 lg~GTlYIa~s~LsWl~~~~akGfSvey~~Is 64 (216)
T KOG3238|consen 33 LGTGTLYIAESTLSWLSTSGAKGFSVEYPTIS 64 (216)
T ss_pred cccceEEEecceEEeeecccccceeeecceeE
Confidence 34799999999999999666555555555543
No 24
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=56.50 E-value=42 Score=33.69 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCceeEEEEEeCceEEEEcCCC-CeeEEEecCccceEEeCCCCC--CC--CcEEEEeccc-cEEEEEeCCC-cch--HHH
Q psy11382 8 RKPFVGTLHLTTTALIFQDTDC-KKETWILLMHIASIERGPLST--LG--SPLIIRCKTF-LSVTFVIPRE-REC--YDI 78 (328)
Q Consensus 8 ~~~~~GtL~lT~~hLiF~~~~~-~~e~wi~~~~I~~vek~~~s~--~g--~~L~i~CKdf-r~~~f~~~~~-~~~--~~v 78 (328)
.++..|+|++||-|+|+.+... +--+=|-|..|.+|......+ .| ..|.|-+|-- .-+.|.|+.- ... +.+
T Consensus 38 N~G~~G~l~vTNLR~iW~s~~~~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~~~rfEFiFt~~~~~~~~~~l 117 (339)
T PF07289_consen 38 NNGDRGRLVVTNLRLIWHSLKRPRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFNNTRFEFIFTNLSPNSPRQRL 117 (339)
T ss_pred CCCCeeEEEEEeeeeEEeccCCCceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecCCceEEEEeccCCCCCccchH
Confidence 3457999999999999998543 344677888888887543221 23 4577777721 2235556532 222 378
Q ss_pred HHHHHHhcCC
Q psy11382 79 YVTLQKLSRP 88 (328)
Q Consensus 79 ~~~l~~l~~p 88 (328)
|.++++.-+.
T Consensus 118 f~~v~~v~ra 127 (339)
T PF07289_consen 118 FTSVQAVYRA 127 (339)
T ss_pred HHHHHHHHHH
Confidence 8888776443
No 25
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=53.59 E-value=32 Score=28.29 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=41.9
Q ss_pred EEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHHHHHHHh
Q psy11382 34 WILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKL 85 (328)
Q Consensus 34 wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~l 85 (328)
-|.+..+..|.+.+....+..+.|...| +.+.|...++.|..+.++.|..|
T Consensus 51 vI~L~~c~~v~~~~d~k~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 51 VIPLESCFNINKRADAKHRHLIALYTRD-EYFAVAAENEAEQDSWYQALLEL 101 (101)
T ss_pred EEEccceEEEeeccccccCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhhC
Confidence 5788888888776555556789999999 99999999999999999888653
No 26
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=43.53 E-value=1.1e+02 Score=26.03 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCcEEEEeccccEEEEEeCCCcchHHHHHHHHHh
Q psy11382 52 GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKL 85 (328)
Q Consensus 52 g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~l 85 (328)
+..|.++-.+-.++-+-|-+++||.+|++.|+++
T Consensus 88 ~~~l~~r~~~~~I~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 88 DPYLIYRNDNQEIYGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp TTEEEEEETTTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCceEEEEEEEeHHHHHHHHHHHHhc
Confidence 4567888777799999999999999999999886
No 27
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=42.84 E-value=1.6e+02 Score=22.91 Aligned_cols=74 Identities=16% Similarity=0.052 Sum_probs=48.7
Q ss_pred ceeEEEEEeCceEEEEcCC--CCeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHHHHHHH
Q psy11382 10 PFVGTLHLTTTALIFQDTD--CKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQK 84 (328)
Q Consensus 10 ~~~GtL~lT~~hLiF~~~~--~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~ 84 (328)
-..--..|++..|++...+ ...+-.|++... .|+..........+.|...+.+.+.|.-+++.+..+....|..
T Consensus 20 WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 20 WARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-TIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred ceeEEEEEECCEEEEECCCCCCccceEEEccCC-EEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 4444577888899888532 333446666654 3443322234456788788889999988888888888777753
No 28
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=40.63 E-value=1.5e+02 Score=21.94 Aligned_cols=79 Identities=19% Similarity=0.072 Sum_probs=57.6
Q ss_pred CCCceeEEEEEeCceEEEEcCCC-----CeeEEEecCccceEEeCCCC------CCCCcEEEEeccccEEEEEeCCCcch
Q psy11382 7 LRKPFVGTLHLTTTALIFQDTDC-----KKETWILLMHIASIERGPLS------TLGSPLIIRCKTFLSVTFVIPREREC 75 (328)
Q Consensus 7 ~~~~~~GtL~lT~~hLiF~~~~~-----~~e~wi~~~~I~~vek~~~s------~~g~~L~i~CKdfr~~~f~~~~~~~~ 75 (328)
.+....--+.|++..|++...+. ....-|++..+ .|...+.. .....+.|..++-..+.|..++++++
T Consensus 14 ~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~ 92 (104)
T PF00169_consen 14 RKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEER 92 (104)
T ss_dssp SSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHH
T ss_pred CCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHH
Confidence 34455566788899998886332 34456777777 55443322 34578999999988999999999999
Q ss_pred HHHHHHHHHhc
Q psy11382 76 YDIYVTLQKLS 86 (328)
Q Consensus 76 ~~v~~~l~~l~ 86 (328)
.+...+|++..
T Consensus 93 ~~W~~~i~~~~ 103 (104)
T PF00169_consen 93 KRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 29
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=38.24 E-value=1.9e+02 Score=24.39 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=41.7
Q ss_pred CceeEEEEEeCceEEEEcCCCCeeEEEecCccc---------eEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHH
Q psy11382 9 KPFVGTLHLTTTALIFQDTDCKKETWILLMHIA---------SIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIY 79 (328)
Q Consensus 9 ~~~~GtL~lT~~hLiF~~~~~~~e~wi~~~~I~---------~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~ 79 (328)
.--.|.|-||.+.|+|.....+.-.| ||..|- ++|......+|.++ ++|.. .++.+||
T Consensus 19 ~~g~g~L~vt~~~L~l~~~~~~~~~W-Pl~~LRRYG~d~~~FsFEAGRRC~tGeG~---------f~F~t---~~~~~if 85 (102)
T cd01202 19 ELGSGWLELTRTELTLYISGKEPVVW-PLLCLRRYGYNSDLFSFESGRRCQTGEGI---------FAFRC---KRAEELF 85 (102)
T ss_pred eeeeEEEEecceEEEEEcCCCCEEEc-cHHHhHhhccCCCEEEEEccCcCCCCCCE---------EEEEc---CCHHHHH
Confidence 44689999999999999755444457 665543 34433222334432 23332 2378899
Q ss_pred HHHHHhcCC
Q psy11382 80 VTLQKLSRP 88 (328)
Q Consensus 80 ~~l~~l~~p 88 (328)
..++++..-
T Consensus 86 ~~v~~~I~~ 94 (102)
T cd01202 86 NLLQSYIQE 94 (102)
T ss_pred HHHHHHHHc
Confidence 999887554
No 30
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=29.05 E-value=1.9e+02 Score=21.18 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=47.6
Q ss_pred EEEeCceEEEEcCC-CCeeEEEecCccceEEeCCC---CCCC-CcEEEEeccccE--EEEEeCCCcchHHHHHH
Q psy11382 15 LHLTTTALIFQDTD-CKKETWILLMHIASIERGPL---STLG-SPLIIRCKTFLS--VTFVIPRERECYDIYVT 81 (328)
Q Consensus 15 L~lT~~hLiF~~~~-~~~e~wi~~~~I~~vek~~~---s~~g-~~L~i~CKdfr~--~~f~~~~~~~~~~v~~~ 81 (328)
..+|+-+++...+- .+.+..|++..|.+|+-... ...| +.|.|.+.+-.. +.+.+-..+++.++++-
T Consensus 6 y~i~~~~l~i~~G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~ 79 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFSKRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIYDW 79 (80)
T ss_pred EEEECCEEEEEECeEEEEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHHhh
Confidence 67899999998743 34678999999999985321 1112 578888888775 56666667778887764
No 31
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=25.97 E-value=3.6e+02 Score=21.82 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=41.7
Q ss_pred ceeEEEEEeCceEEEEcCCCCee-EEEecCccceEEeCC---------CCCCCCc-EEEEeccccEEEEEeCCCcchHHH
Q psy11382 10 PFVGTLHLTTTALIFQDTDCKKE-TWILLMHIASIERGP---------LSTLGSP-LIIRCKTFLSVTFVIPRERECYDI 78 (328)
Q Consensus 10 ~~~GtL~lT~~hLiF~~~~~~~e-~wi~~~~I~~vek~~---------~s~~g~~-L~i~CKdfr~~~f~~~~~~~~~~v 78 (328)
.-.+.|+||...|+|.+.....+ ...|+..|-+--... ....|.+ +.+.|+| +.+|
T Consensus 21 ~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G~f~f~t~~-------------a~~I 87 (100)
T PF02174_consen 21 SGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGIFSFEAGRRCPTGEGLFWFQTPD-------------AEEI 87 (100)
T ss_dssp EEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTEEEEEESTTSTTCSEEEEEEEST-------------HHHH
T ss_pred eEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCEEEEEECCcCCCCCcEEEEEeCC-------------HHHH
Confidence 45679999999999976555544 567888887664322 2223432 2333333 7889
Q ss_pred HHHHHHhc
Q psy11382 79 YVTLQKLS 86 (328)
Q Consensus 79 ~~~l~~l~ 86 (328)
|+.|++..
T Consensus 88 ~~~v~~~i 95 (100)
T PF02174_consen 88 FETVERAI 95 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 32
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=25.95 E-value=3.6e+02 Score=21.83 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=45.9
Q ss_pred EEEeCceEEEEcCCC----CeeEEEecCccceEEeCCCCC-------CCCcEEEEeccccEEEEEeCCCcchHHHHHHHH
Q psy11382 15 LHLTTTALIFQDTDC----KKETWILLMHIASIERGPLST-------LGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQ 83 (328)
Q Consensus 15 L~lT~~hLiF~~~~~----~~e~wi~~~~I~~vek~~~s~-------~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~ 83 (328)
..|++.+|.|..... ..-=-|++..+..||...... ....+.|.+.+ +.+.+.-++++|..+..++|+
T Consensus 26 FvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~ 104 (106)
T cd01238 26 FVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFAPTEELRKRWIKALK 104 (106)
T ss_pred EEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEcCCHHHHHHHHHHHH
Confidence 778999998875221 122378888888888543221 24567788876 455566677778888888876
Q ss_pred H
Q psy11382 84 K 84 (328)
Q Consensus 84 ~ 84 (328)
+
T Consensus 105 ~ 105 (106)
T cd01238 105 Q 105 (106)
T ss_pred h
Confidence 5
No 33
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=24.42 E-value=1.4e+02 Score=28.02 Aligned_cols=39 Identities=23% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCCCceeEEEEEeCceEEEEcCCCCeeEEEecCccceEEeC
Q psy11382 6 DLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERG 46 (328)
Q Consensus 6 ~~~~~~~GtL~lT~~hLiF~~~~~~~e~wi~~~~I~~vek~ 46 (328)
...++..|.+.||+-+|+|...+ ...-||+..|..|+..
T Consensus 21 ~d~~W~~~rIiLs~~rlvl~~~~--~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 21 PDGKWVKGRIILSNDRLVLAFND--GKITIPLSSIEDIGVR 59 (221)
T ss_pred ccCCcEEEEEEEecCEEEEEcCC--CeEEEecceeEecccc
Confidence 35789999999999999998843 4578999999999853
No 34
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.63 E-value=3.2e+02 Score=20.43 Aligned_cols=73 Identities=14% Similarity=-0.017 Sum_probs=43.4
Q ss_pred ceeEEEEEeCceEEEEcCCCC----eeEEEecCccceEEeCCCCC-CCCcEEEEeccccEEEEEeCCCcchHHHHHHHHH
Q psy11382 10 PFVGTLHLTTTALIFQDTDCK----KETWILLMHIASIERGPLST-LGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQK 84 (328)
Q Consensus 10 ~~~GtL~lT~~hLiF~~~~~~----~e~wi~~~~I~~vek~~~s~-~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~ 84 (328)
-..=-..|....|++...+.. ...-|.+..+ +|+..+... ....+.|...+ +.+.|.-+++.+..+...+|+.
T Consensus 16 W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 16 WKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRC-TVRHNGKQPDRRFCFEVISPT-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred ceEEEEEEeCCeEEEEcCCcccccccceEEeccce-EEecCccccCCceEEEEEcCC-cEEEEECCCHHHHHHHHHHHhc
Confidence 333345667888888753221 1112333221 233332221 35678999999 8888988888888888777753
No 35
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=23.57 E-value=27 Score=27.58 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.4
Q ss_pred HHhccCCccccccCcHHHHh
Q psy11382 243 DHVTSCQFGTFVGNCEKDRL 262 (328)
Q Consensus 243 dh~ys~~fGTFL~Nse~eR~ 262 (328)
|.+|++.||+|+-++|.+-.
T Consensus 2 DKLyaaifGvFmss~ddDf~ 21 (72)
T PF12575_consen 2 DKLYAAIFGVFMSSSDDDFN 21 (72)
T ss_pred hhHHHHHHhhhcCCCHHHHH
Confidence 78999999999999888654
No 36
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.86 E-value=3.6e+02 Score=20.00 Aligned_cols=73 Identities=14% Similarity=-0.026 Sum_probs=44.6
Q ss_pred CceeEEEEEeCceEEEEcCCCCe----eEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHHHHHHH
Q psy11382 9 KPFVGTLHLTTTALIFQDTDCKK----ETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQK 84 (328)
Q Consensus 9 ~~~~GtL~lT~~hLiF~~~~~~~----e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~ 84 (328)
....=-+.|++..|+|...+... .--|.+... +|+..+ .....+.|.+++=+.+.|.-++++++.+...+|+.
T Consensus 14 ~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~-~~~~~~--~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 14 GWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGA-VISEDD--SDDKCFTIDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CceeeEEEEECCEEEEEecCccCCCCceEEEEeceE-EEEECC--CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 34444467788888887533211 112222221 233221 22467888898889999998888888888777754
Done!