RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11382
(328 letters)
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 156 bits (394), Expect = 5e-43
Identities = 59/129 (45%), Positives = 83/129 (64%), Gaps = 3/129 (2%)
Query: 182 SLIEKDWLSFGHKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLL 239
L+EK+WLSFGH+F R GH + SPVF+QF++C WQ++ QFP AFEFNE FL+
Sbjct: 450 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI 509
Query: 240 TLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIR 299
T+ DH+ SC FGTF+ N E+ R L + T SLW Y+ +++ED+ NPLY +
Sbjct: 510 TILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSY-SNHVLY 568
Query: 300 PDLSPQNIR 308
P S +++
Sbjct: 569 PVASMRHLE 577
Score = 80.0 bits (196), Expect = 8e-17
Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 41/173 (23%)
Query: 8 RKPFVGTLHLTTTALIFQDTDCKKE--TWILLMHIASIERGPLSTL----GSPLIIRCKT 61
GTL +T L F+ + L I +E+ ++ L CK
Sbjct: 101 TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD 160
Query: 62 FLSVTFVI-PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLK 120
++ F P R I+ L K + P
Sbjct: 161 IRNLRFAHKPEGRTRRSIFENLMKYAFP-------------------------------V 189
Query: 121 IHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYEL 173
+ L+ F Y E GW + E++R +PN+ W +T +N+ YEL
Sbjct: 190 SNNLPLFAFEY---KEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYEL 239
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 154 bits (389), Expect = 7e-43
Identities = 59/129 (45%), Positives = 83/129 (64%), Gaps = 3/129 (2%)
Query: 182 SLIEKDWLSFGHKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLL 239
L+EK+WLSFGH+F R GH + SPVF+QF++C WQ++ QFP AFEFNE FL+
Sbjct: 378 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI 437
Query: 240 TLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIR 299
T+ DH+ SC FGTF+ N E+ R L + T SLW Y+ +++ED+ NPLY +
Sbjct: 438 TILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSY-SNHVLY 496
Query: 300 PDLSPQNIR 308
P S +++
Sbjct: 497 PVASMRHLE 505
Score = 78.0 bits (191), Expect = 3e-16
Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 41/173 (23%)
Query: 8 RKPFVGTLHLTTTALIFQDTDCKKE--TWILLMHIASIERGPLSTL----GSPLIIRCKT 61
GTL +T L F+ + L I +E+ ++ L CK
Sbjct: 29 TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD 88
Query: 62 FLSVTFVI-PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLK 120
++ F P R I+ L K + P
Sbjct: 89 IRNLRFAHKPEGRTRRSIFENLMKYAFP-------------------------------V 117
Query: 121 IHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYEL 173
+ L+ F Y E GW + E++R +PN+ W +T +N+ YEL
Sbjct: 118 SNNLPLFAFEY---KEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYEL 167
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 151 bits (381), Expect = 7e-42
Identities = 73/128 (57%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
Query: 182 SLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTL 241
LIEKDW+SFGHKF++RCG L GDP+EVSPVF QFLEC W L+ QFPQAFEF+E FLL +
Sbjct: 366 VLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQI 425
Query: 242 QDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD-FIRP 300
+H+ SCQFG F+GNC+K+R +L+L E TYSLW ++ + Y+NPLYS ++H + P
Sbjct: 426 HEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESHRFTVLEP 485
Query: 301 DLSPQNIR 308
+ N +
Sbjct: 486 NTVSFNFK 493
Score = 116 bits (291), Expect = 2e-29
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 34/169 (20%)
Query: 8 RKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTF 67
K GTL+LT T L+F D+ +KETWIL HIAS+E+ L+T G PL+I+CK F +V F
Sbjct: 22 NKSLTGTLYLTATHLLFIDSH-QKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHF 80
Query: 68 VIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELY 127
++PRER+C+DIY +L +LS+ E+LY
Sbjct: 81 IVPRERDCHDIYNSLLQLSKQA--------------------------------KYEDLY 108
Query: 128 CFTYTSTT-ESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
F+Y +S + GW L +E+KRM VPN W L++ N++Y++ +
Sbjct: 109 AFSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSHWQLSDANRDYKICE 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 55/351 (15%), Positives = 94/351 (26%), Gaps = 136/351 (38%)
Query: 7 LRKPFVGTLHLTTTALIFQD-TDCKKETWI-LLMHIAS-IERGPLSTLGSPL--IIRC-- 59
L++ F L T D E L +++S +E + L +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 60 KTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRRE--------------PYPEPPV 105
+L DI+ KL + L + +E P+ +
Sbjct: 93 NCYLEGN----------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS- 141
Query: 106 CKSSVIPTRPQRLLKIH------------IEEL---YCFTYT------------------ 132
S++ + ++ EEL Y TY
Sbjct: 142 -NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TYHVLVGDLIKFSAETLSELI 199
Query: 133 -STTESPKSY--GWDFFS-LEQEFKRMQVPNDEW-----------CLTNLNKNY------ 171
+T ++ K + G + LE P+ ++ + L +Y
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNT---PDKDYLLSIPISCPLIGVIQL-AHYVVTAKL 255
Query: 172 ------ELVDILRGGTSLIE-----------KDWLSF---GHKFTD-------RCGHLAG 204
EL L+G T + W SF K RC + A
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEAY 314
Query: 205 DPREVSPVFVQ-FLEC-----SWQLSVQ-FPQAFEFNEIFLLTLQDHVTSC 248
+ P ++ LE S LS+ Q +QD+V
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQE---------QVQDYVNKT 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 61/224 (27%)
Query: 123 IEELYCFTYTSTTESPKSYGWDFFSLEQEFKR-MQVPNDE-------WCL---------- 164
++ C + PKS S ++E + + W L
Sbjct: 30 VDNFDC---KDVQDMPKS----ILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 165 ---TNLNKNYE-LVDILRG---GTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFL 217
L NY+ L+ ++ S++ + ++ DR L D + + V L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ----RDR---LYNDNQVFAKYNVSRL 134
Query: 218 ECSWQLSVQFPQAFEFNEIFL-------------LTLQDHVTSCQ--FGTF---VGNCEK 259
+ +L + + + + C+ F F + NC
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 260 DRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLS 303
L + + L + + + I+ +L
Sbjct: 195 PETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Score = 42.9 bits (100), Expect = 1e-04
Identities = 39/291 (13%), Positives = 73/291 (25%), Gaps = 48/291 (16%)
Query: 57 IRCKTFL-----SVTFVIPRERECYDIYVTLQK-LSRPEPKKLRRR---REPYPEPP-VC 106
+ CK L VT + + L+ E K L + P P V
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 107 KS-----SVI-------PTRPQRLLKIHIEEL-----YCFTYTSTTESPKSYGWDFFSLE 149
+ S+I ++ ++L E K +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFP 382
Query: 150 QEFKRMQVPNDEWCLTNLNKNYELV-DILRG--GTSLIEKDWLSFGHKFTDRCGHLAGDP 206
+P L + V ++ SL+EK L
Sbjct: 383 PSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 207 REVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQD--------HVTSCQFGTFVGNCE 258
+ ++ P+ F+ +++ L H+ + + +
Sbjct: 440 ENEYALHRSIVDH-----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 259 KDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRY 309
LD R E N +N L + +I + P+ R
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERL 544
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.14
Identities = 4/16 (25%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 280 RMEDYINPLYSPDAHP 295
+++ + LY+ D+ P
Sbjct: 24 KLQASLK-LYADDSAP 38
Score = 29.5 bits (65), Expect = 0.75
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 83 QKLSRPEPKKLRRRREPY-PE--PPVC-KSSV 110
Q L KKL+ + Y + P + K+++
Sbjct: 20 QAL-----KKLQASLKLYADDSAPALAIKATM 46
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB,
TRK, NPXPY motif,, signaling protein/growth factor
receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Length = 129
Score = 26.2 bits (57), Expect = 9.0
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 20/103 (19%)
Query: 13 GTLHLTTTALIFQDTDCKKETWILL--------MHIASIERGPLSTLGSPLIIRCKTFLS 64
G + LT T LI W L ++ S E G G F
Sbjct: 29 GIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQ------GIF-- 80
Query: 65 VTFVIPRERECYDI---YVTLQKLSRPEPKKLRRRREPYPEPP 104
F R E +++ + ++ E + R
Sbjct: 81 -AFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEV 122
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein;
NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Length = 26
Score = 23.9 bits (51), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 101 PEPPVCKSSVIPTRPQ 116
P PPVC + +PT PQ
Sbjct: 2 PCPPVCVAQCVPTCPQ 17
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.439
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,093,721
Number of extensions: 293585
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 21
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)