RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11382
         (328 letters)



>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score =  168 bits (426), Expect = 1e-49
 Identities = 61/134 (45%), Positives = 87/134 (64%), Gaps = 3/134 (2%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPR--EVSPVFVQFLECSWQLSVQFPQAFEFN 234
           +RG   L+EK+WLSFGH+F  R GH   +    + SPVF+QF++C WQ++ QFP AFEFN
Sbjct: 244 IRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFN 303

Query: 235 EIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAH 294
           E FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY     
Sbjct: 304 EYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGS-YS 362

Query: 295 PDFIRPDLSPQNIR 308
              + P  S +++ 
Sbjct: 363 NHVLYPVASMRHLE 376



 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 142 GWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
           GW  +    E++R  +PN+ W +T +N+ YEL D
Sbjct: 7   GWKLYDPLLEYRRQGIPNESWRITKINERYELCD 40


>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 68.4 bits (167), Expect = 6e-15
 Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 38/129 (29%)

Query: 10  PFVGTLHLTTTALIFQDTDCKKE--TWILLMHIASIERGPLSTLGS----PLIIRCKTFL 63
              GTL +T   L F+  +          L  I  +E+   ++        L   CK   
Sbjct: 27  AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIR 86

Query: 64  SVTFVI-PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIH 122
           ++ F   P  R    I+  L K + P                                 +
Sbjct: 87  NLRFAHKPEGRTRRSIFENLMKYAFPVS-------------------------------N 115

Query: 123 IEELYCFTY 131
              L+ F Y
Sbjct: 116 NLPLFAFEY 124


>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp.
           [TaxId: 6086]}
          Length = 26

 Score = 23.9 bits (51), Expect = 3.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 101 PEPPVCKSSVIPTRPQ 116
           P PPVC +  +PT PQ
Sbjct: 1   PCPPVCVAQCVPTCPQ 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,344
Number of extensions: 61778
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 7
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)