Query psy11384
Match_columns 137
No_of_seqs 126 out of 182
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 17:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11384.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11384hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 49.1 3 0.00022 23.0 1.1 12 17-28 3-14 (29)
2 d1zr9a1 g.37.1.4 (A:28-94) Zin 40.4 2.6 0.00019 26.7 -0.1 15 70-84 14-28 (67)
3 d1ef4a_ a.4.11.1 (A:) RNA poly 40.4 3.4 0.00025 25.5 0.4 12 20-31 3-14 (55)
4 d1twfj_ a.4.11.1 (J:) RNA poly 39.2 4.1 0.0003 25.8 0.7 12 19-30 3-14 (65)
5 d1lnga_ d.201.1.1 (A:) SRP19 { 37.1 3.3 0.00024 27.0 -0.0 21 27-47 17-37 (87)
6 d1kvva_ d.201.1.1 (A:) SRP19 { 29.9 5.1 0.00037 26.8 -0.1 22 27-48 20-41 (104)
7 d1cc1l_ e.18.1.1 (L:) Nickel-i 27.5 3.6 0.00026 32.5 -1.4 9 72-80 479-487 (487)
8 d1e3db_ e.18.1.1 (B:) Nickel-i 26.6 3.8 0.00028 32.7 -1.4 8 73-80 530-537 (537)
9 d1yq9h1 e.18.1.1 (H:7-536) Nic 25.6 4.1 0.0003 32.2 -1.4 8 73-80 523-530 (530)
10 d1frfl_ e.18.1.1 (L:) Nickel-i 24.6 4.4 0.00032 32.6 -1.4 9 72-80 535-543 (543)
11 d1wuil1 e.18.1.1 (L:19-552) Ni 23.9 4.6 0.00034 32.3 -1.4 9 72-80 526-534 (534)
12 d1twfl_ g.41.9.2 (L:) RBP12 su 23.8 10 0.00074 22.6 0.5 14 18-31 19-32 (46)
13 d1x63a2 g.39.1.3 (A:45-76) Fou 23.1 7.2 0.00052 21.7 -0.2 16 61-78 12-27 (32)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=49.13 E-value=3 Score=22.99 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.6
Q ss_pred CccceeccCCCc
Q psy11384 17 HVNPVRCTNCAR 28 (137)
Q Consensus 17 hv~~V~C~NCgr 28 (137)
+-++|.|-|||+
T Consensus 3 qr~~ikCfNCGk 14 (29)
T d1nc8a_ 3 QRKVIRCWNCGK 14 (29)
T ss_dssp CCCCCBCTTTSC
T ss_pred CcceeEeecCCc
Confidence 346899999996
No 2
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.42 E-value=2.6 Score=26.70 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=11.6
Q ss_pred eEEEeeeeeeecCcc
Q psy11384 70 KLHYCVSCAIHSKVV 84 (137)
Q Consensus 70 Kl~YCVSCAIHskVV 84 (137)
-.+|||.|+-|..--
T Consensus 14 gqfYCv~C~K~F~se 28 (67)
T d1zr9a1 14 GLHRCLACARYFIDS 28 (67)
T ss_dssp GCSEETTTTEECSSH
T ss_pred CEEecccccCccCCH
Confidence 348999999887643
No 3
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=40.41 E-value=3.4 Score=25.53 Aligned_cols=12 Identities=50% Similarity=1.171 Sum_probs=10.5
Q ss_pred ceeccCCCcccc
Q psy11384 20 PVRCTNCARCVP 31 (137)
Q Consensus 20 ~V~C~NCgrcvP 31 (137)
||||-.||..+-
T Consensus 3 PVRCFTCGkvia 14 (55)
T d1ef4a_ 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CcCcCCCchhHH
Confidence 899999998764
No 4
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.22 E-value=4.1 Score=25.84 Aligned_cols=12 Identities=50% Similarity=1.160 Sum_probs=10.3
Q ss_pred cceeccCCCccc
Q psy11384 19 NPVRCTNCARCV 30 (137)
Q Consensus 19 ~~V~C~NCgrcv 30 (137)
-||||-.||+.+
T Consensus 3 IPVRCFTCgkvi 14 (65)
T d1twfj_ 3 VPVRCFSCGKVV 14 (65)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCcccCCCCcCh
Confidence 389999999866
No 5
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=37.14 E-value=3.3 Score=27.00 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=16.9
Q ss_pred Ccccccccceeeceeecchhh
Q psy11384 27 ARCVPKDKAIKKFVIRNIVEA 47 (137)
Q Consensus 27 grcvPKDKAIKrf~irNiVEa 47 (137)
||.||++.|+....+.-|.++
T Consensus 17 GRRv~k~~aV~~P~~~eI~~a 37 (87)
T d1lnga_ 17 GRKVPEELAIEKPSLKDIEKA 37 (87)
T ss_dssp TCCSCTTTCBSSCCHHHHHHH
T ss_pred cCccCHHHHccCCCHHHHHHH
Confidence 699999999987776666554
No 6
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.92 E-value=5.1 Score=26.82 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=17.4
Q ss_pred CcccccccceeeceeecchhhH
Q psy11384 27 ARCVPKDKAIKKFVIRNIVEAA 48 (137)
Q Consensus 27 grcvPKDKAIKrf~irNiVEaa 48 (137)
||.||++.|+..-.+.-|.+++
T Consensus 20 GRRv~k~~aV~~P~~~eI~~a~ 41 (104)
T d1kvva_ 20 GRRIPRRFAVPNVKLHELVEAS 41 (104)
T ss_dssp CCCSCTTTCCSSCCHHHHHHHH
T ss_pred cCccCHHHhcCCCCHHHHHHHH
Confidence 6999999999877776666553
No 7
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=27.54 E-value=3.6 Score=32.46 Aligned_cols=9 Identities=44% Similarity=1.257 Sum_probs=7.4
Q ss_pred EEeeeeeee
Q psy11384 72 HYCVSCAIH 80 (137)
Q Consensus 72 ~YCVSCAIH 80 (137)
-=|+|||.|
T Consensus 479 DPCisCa~H 487 (487)
T d1cc1l_ 479 DPCLGCAVH 487 (487)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 459999988
No 8
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=26.60 E-value=3.8 Score=32.70 Aligned_cols=8 Identities=38% Similarity=1.273 Sum_probs=6.0
Q ss_pred Eeeeeeee
Q psy11384 73 YCVSCAIH 80 (137)
Q Consensus 73 YCVSCAIH 80 (137)
=|+|||.|
T Consensus 530 PC~sCa~H 537 (537)
T d1e3db_ 530 PCIACSTH 537 (537)
T ss_dssp CBHHHHHC
T ss_pred cccccccc
Confidence 47888777
No 9
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=25.59 E-value=4.1 Score=32.16 Aligned_cols=8 Identities=38% Similarity=1.402 Sum_probs=5.7
Q ss_pred Eeeeeeee
Q psy11384 73 YCVSCAIH 80 (137)
Q Consensus 73 YCVSCAIH 80 (137)
=|+|||+|
T Consensus 523 PC~sCa~H 530 (530)
T d1yq9h1 523 PCIACGVH 530 (530)
T ss_dssp CBHHHHHC
T ss_pred Cccccccc
Confidence 47777776
No 10
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=24.61 E-value=4.4 Score=32.60 Aligned_cols=9 Identities=33% Similarity=1.261 Sum_probs=7.1
Q ss_pred EEeeeeeee
Q psy11384 72 HYCVSCAIH 80 (137)
Q Consensus 72 ~YCVSCAIH 80 (137)
-=|+|||.|
T Consensus 535 DPC~sCa~H 543 (543)
T d1frfl_ 535 DPCIACGVH 543 (543)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 348999888
No 11
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=23.93 E-value=4.6 Score=32.26 Aligned_cols=9 Identities=33% Similarity=1.261 Sum_probs=6.9
Q ss_pred EEeeeeeee
Q psy11384 72 HYCVSCAIH 80 (137)
Q Consensus 72 ~YCVSCAIH 80 (137)
-=|+|||.|
T Consensus 526 DPCisCa~H 534 (534)
T d1wuil1 526 DPCIACGVH 534 (534)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 348888887
No 12
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.80 E-value=10 Score=22.59 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=11.0
Q ss_pred ccceeccCCCcccc
Q psy11384 18 VNPVRCTNCARCVP 31 (137)
Q Consensus 18 v~~V~C~NCgrcvP 31 (137)
..+|+|-+||--+-
T Consensus 19 ~d~irCreCG~RIl 32 (46)
T d1twfl_ 19 TDAVRCKDCGHRIL 32 (46)
T ss_dssp TSTTCCSSSCCCCC
T ss_pred CCcEEeccCCcEEE
Confidence 47899999996553
No 13
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.14 E-value=7.2 Score=21.66 Aligned_cols=16 Identities=38% Similarity=0.858 Sum_probs=10.0
Q ss_pred ccccceeeEeEEEeeeee
Q psy11384 61 SYQLPKLYAKLHYCVSCA 78 (137)
Q Consensus 61 ~y~lPKlyvKl~YCVSCA 78 (137)
|-.+|| -.-.|||+|-
T Consensus 12 gsffpk--g~d~ycvtch 27 (32)
T d1x63a2 12 GSFFPK--GEDFYCVTCH 27 (32)
T ss_dssp SCEEEE--TTEEEEHHHH
T ss_pred ccccCC--CCcEEEEEee
Confidence 334455 3458999984
Done!