RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11384
         (137 letters)



>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
          (Mamestra brassicae) [TaxId: 55057]}
          Length = 101

 Score = 26.2 bits (58), Expect = 0.89
 Identities = 4/23 (17%), Positives = 10/23 (43%)

Query: 24 TNCARCVPKDKAIKKFVIRNIVE 46
            C +C    +     VI ++++
Sbjct: 51 NGCKKCTENQEKGAYRVIEHLIK 73


>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 256

 Score = 25.5 bits (56), Expect = 2.2
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 26  CARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQS 61
            A  V  +  IKK  I  I+   + RD  + + + S
Sbjct: 107 YAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGS 142


>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
           C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 173

 Score = 25.5 bits (55), Expect = 2.2
 Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 3/31 (9%)

Query: 10  RSKHGRGHVNPVRCTNCARCV---PKDKAIK 37
                        CT C  C+   P    I+
Sbjct: 129 FDPETHLPTVTDTCTGCTLCLSVCPIIDCIR 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,887
Number of extensions: 20595
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 18
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)