Query psy11388
Match_columns 90
No_of_seqs 101 out of 523
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:08:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00895 PI3Kc_C2_beta Phosphoi 100.0 9.3E-31 2E-35 197.4 10.3 86 1-87 269-354 (354)
2 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.1E-30 2.4E-35 197.0 10.2 86 1-87 268-353 (353)
3 cd05175 PI3Kc_IA_alpha Phospho 100.0 1.2E-30 2.5E-35 197.5 9.0 87 1-87 280-366 (366)
4 cd05177 PI3Kc_C2_gamma Phospho 100.0 3.6E-29 7.8E-34 188.9 10.4 86 1-87 269-354 (354)
5 cd05173 PI3Kc_IA_beta Phosphoi 100.0 6.8E-29 1.5E-33 187.9 10.5 88 1-88 275-362 (362)
6 cd05174 PI3Kc_IA_delta Phospho 100.0 6.2E-29 1.4E-33 188.0 10.2 86 2-87 276-361 (361)
7 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.3E-28 2.8E-33 186.5 9.1 86 1-86 279-364 (365)
8 cd05165 PI3Kc_I Phosphoinositi 100.0 1.9E-28 4.1E-33 185.7 9.6 87 1-87 280-366 (366)
9 cd05166 PI3Kc_II Phosphoinosit 99.9 9.1E-28 2E-32 181.3 10.5 85 2-87 269-353 (353)
10 cd00891 PI3Kc Phosphoinositide 99.9 1.5E-26 3.2E-31 174.6 10.8 86 1-87 267-352 (352)
11 cd05167 PI4Kc_III_alpha Phosph 99.9 4.1E-26 8.9E-31 170.0 10.1 86 1-88 224-309 (311)
12 KOG0904|consensus 99.9 2.2E-26 4.9E-31 186.7 7.6 85 1-85 991-1075(1076)
13 cd00896 PI3Kc_III Phosphoinosi 99.9 1.1E-25 2.5E-30 169.7 10.5 87 1-88 261-349 (350)
14 KOG0905|consensus 99.9 1.8E-25 3.9E-30 185.2 9.9 87 1-88 1262-1348(1639)
15 cd00893 PI4Kc_III Phosphoinosi 99.9 1.3E-24 2.9E-29 160.5 10.7 86 1-88 202-287 (289)
16 KOG0906|consensus 99.9 1.3E-23 2.9E-28 167.2 9.0 87 1-88 753-841 (843)
17 cd05168 PI4Kc_III_beta Phospho 99.9 3.7E-23 8E-28 153.1 10.7 86 2-88 204-291 (293)
18 KOG0903|consensus 99.9 2.1E-21 4.6E-26 156.2 9.6 86 2-88 758-845 (847)
19 KOG0902|consensus 99.8 5.3E-21 1.1E-25 160.8 9.5 86 1-88 1715-1800(1803)
20 COG5032 TEL1 Phosphatidylinosi 98.7 1.9E-08 4E-13 89.5 5.5 84 3-87 2006-2097(2105)
21 smart00146 PI3Kc Phosphoinosit 97.7 5.6E-05 1.2E-09 53.0 4.2 38 2-39 163-200 (202)
22 PF00454 PI3_PI4_kinase: Phosp 96.7 0.0035 7.6E-08 44.1 4.7 36 2-37 199-234 (235)
23 cd00142 PI3Kc_like Phosphoinos 96.5 0.0033 7.2E-08 44.6 3.8 29 2-30 190-218 (219)
24 cd00892 PIKKc_ATR ATR (Ataxia 95.3 0.027 5.9E-07 40.6 3.9 29 2-30 201-229 (237)
25 cd05164 PIKKc Phosphoinositide 94.9 0.039 8.4E-07 39.4 3.9 28 2-29 193-220 (222)
26 cd05169 PIKKc_TOR TOR (Target 94.6 0.049 1.1E-06 39.9 3.7 30 2-31 244-273 (280)
27 cd05171 PIKKc_ATM Ataxia telan 93.4 0.12 2.6E-06 38.0 3.9 31 2-32 243-273 (279)
28 cd05172 PIKKc_DNA-PK DNA-depen 89.7 0.55 1.2E-05 33.8 3.8 29 2-30 199-227 (235)
29 cd05170 PIKKc_SMG1 Suppressor 87.9 0.82 1.8E-05 34.2 3.8 29 2-30 271-299 (307)
30 PLN02150 terpene synthase/cycl 86.9 0.74 1.6E-05 29.0 2.7 23 44-69 13-35 (96)
31 KOG2001|consensus 80.8 8.5 0.00018 32.3 7.0 61 23-84 224-284 (734)
32 PF03701 UPF0181: Uncharacteri 78.4 6.6 0.00014 22.2 4.0 41 31-71 3-46 (51)
33 cd04449 DEP_DEPDC5-like DEP (D 76.3 5.4 0.00012 24.2 3.7 35 36-70 30-64 (83)
34 cd04371 DEP DEP domain, named 74.3 7.3 0.00016 22.6 3.8 33 35-68 28-60 (81)
35 PRK05114 hypothetical protein; 71.8 12 0.00027 21.7 4.1 41 31-71 3-46 (59)
36 cd04438 DEP_dishevelled DEP (D 70.2 13 0.00029 22.7 4.4 34 35-68 29-62 (84)
37 cd04450 DEP_RGS7-like DEP (Dis 69.0 9.6 0.00021 23.2 3.6 33 35-68 28-60 (88)
38 PF08766 DEK_C: DEK C terminal 68.4 16 0.00036 20.2 4.2 45 23-69 8-52 (54)
39 cd04447 DEP_BRCC3 DEP (Disheve 68.3 14 0.0003 23.3 4.2 34 35-68 29-68 (92)
40 KOG0173|consensus 66.4 9.8 0.00021 28.4 3.7 28 41-68 171-198 (271)
41 cd04442 DEP_1_DEP6 DEP (Dishev 61.2 13 0.00028 22.8 3.0 35 35-70 28-62 (82)
42 cd04448 DEP_PIKfyve DEP (Dishe 60.0 21 0.00045 21.6 3.8 33 35-68 28-60 (81)
43 cd03751 proteasome_alpha_type_ 59.3 19 0.00041 25.2 4.0 30 42-71 169-198 (212)
44 smart00049 DEP Domain found in 58.6 22 0.00048 20.5 3.7 33 35-68 20-52 (77)
45 PF00610 DEP: Domain found in 58.6 13 0.00027 21.4 2.6 35 34-68 16-51 (74)
46 cd04441 DEP_2_DEP6 DEP (Dishev 56.7 18 0.00038 22.4 3.1 35 35-70 32-66 (85)
47 PRK00481 NAD-dependent deacety 56.3 18 0.00039 25.8 3.6 60 27-87 24-89 (242)
48 cd01413 SIR2_Af2 SIR2_Af2: Arc 55.7 16 0.00035 25.9 3.2 60 27-87 15-80 (222)
49 COG3140 Uncharacterized protei 54.3 34 0.00075 19.8 3.8 42 30-71 2-46 (60)
50 cd03753 proteasome_alpha_type_ 51.7 30 0.00065 24.0 4.0 30 42-71 171-200 (213)
51 PF14394 DUF4423: Domain of un 51.1 41 0.00089 23.0 4.5 28 41-68 41-68 (171)
52 cd04446 DEP_DEPDC4 DEP (Dishev 50.6 38 0.00083 21.4 4.0 36 35-70 27-69 (95)
53 cd03752 proteasome_alpha_type_ 49.7 34 0.00073 23.7 4.0 30 42-71 170-199 (213)
54 cd04443 DEP_GPR155 DEP (Dishev 49.4 37 0.0008 20.7 3.7 34 35-69 30-63 (83)
55 cd03765 proteasome_beta_bacter 49.3 34 0.00074 24.7 4.1 30 42-71 154-183 (236)
56 PF11593 Med3: Mediator comple 49.3 49 0.0011 25.9 5.1 44 41-87 9-54 (379)
57 cd03759 proteasome_beta_type_3 48.9 34 0.00074 23.4 3.9 30 42-71 141-170 (195)
58 TIGR03552 F420_cofC 2-phospho- 48.8 17 0.00036 24.5 2.3 30 42-71 9-38 (195)
59 cd04440 DEP_2_P-Rex DEP (Dishe 48.8 44 0.00096 21.0 4.0 35 34-69 36-70 (93)
60 cd03761 proteasome_beta_type_5 48.1 34 0.00075 23.2 3.8 30 42-71 136-165 (188)
61 cd03755 proteasome_alpha_type_ 46.8 40 0.00086 23.3 4.0 30 42-71 167-196 (207)
62 KOG2758|consensus 46.5 20 0.00044 28.1 2.6 28 42-71 352-379 (432)
63 PF01817 CM_2: Chorismate muta 46.3 55 0.0012 19.1 4.1 42 30-71 31-76 (81)
64 cd04437 DEP_Epac DEP (Dishevel 45.6 39 0.00086 22.3 3.6 36 35-70 30-65 (125)
65 cd01412 SIRT5_Af1_CobB SIRT5_A 45.3 24 0.00051 24.8 2.7 14 27-40 11-24 (224)
66 cd03763 proteasome_beta_type_7 42.8 51 0.0011 22.3 4.0 30 42-71 135-164 (189)
67 PF14338 Mrr_N: Mrr N-terminal 42.8 75 0.0016 19.1 5.9 65 19-89 4-68 (92)
68 PF00227 Proteasome: Proteasom 42.5 55 0.0012 21.7 4.1 30 42-71 147-176 (190)
69 TIGR03634 arc_protsome_B prote 42.1 51 0.0011 22.1 3.9 30 42-71 137-166 (185)
70 cd01911 proteasome_alpha prote 41.7 54 0.0012 22.6 4.0 30 42-71 167-196 (209)
71 PRK00034 gatC aspartyl/glutamy 40.9 67 0.0015 19.4 4.0 29 39-68 5-33 (95)
72 cd03756 proteasome_alpha_arche 40.7 56 0.0012 22.6 4.0 30 42-71 167-196 (211)
73 PF14585 CagY_I: CagY type 1 r 40.1 23 0.0005 20.7 1.6 20 52-71 13-34 (65)
74 PF11112 PyocinActivator: Pyoc 39.8 52 0.0011 19.8 3.2 36 24-63 2-38 (76)
75 KOG0174|consensus 39.7 35 0.00075 24.7 2.8 29 43-71 156-184 (224)
76 TIGR00135 gatC glutamyl-tRNA(G 38.4 78 0.0017 19.2 4.0 24 39-62 3-26 (93)
77 cd01407 SIR2-fam SIR2 family o 38.2 32 0.0007 24.1 2.5 58 28-87 12-76 (218)
78 cd03750 proteasome_alpha_type_ 37.9 69 0.0015 22.4 4.2 30 42-71 166-195 (227)
79 PF05406 WGR: WGR domain; Int 37.6 29 0.00062 20.6 1.9 24 53-76 53-76 (81)
80 PF07138 DUF1386: Protein of u 37.2 69 0.0015 24.5 4.2 48 1-49 265-322 (324)
81 COG4086 Predicted secreted pro 36.9 76 0.0016 24.1 4.3 63 18-86 235-297 (299)
82 cd04444 DEP_PLEK2 DEP (Disheve 36.8 67 0.0015 20.8 3.6 33 35-68 31-63 (109)
83 TIGR01799 CM_T chorismate muta 36.5 95 0.0021 18.5 5.2 42 30-71 35-80 (83)
84 KOG3430|consensus 36.2 34 0.00074 21.6 2.1 46 29-74 9-55 (90)
85 cd03762 proteasome_beta_type_6 35.7 71 0.0015 21.5 3.8 30 42-71 136-165 (188)
86 TIGR01806 CM_mono2 chorismate 35.2 1.2E+02 0.0027 19.4 5.1 42 30-71 29-74 (114)
87 PLN02999 photosystem II oxygen 34.5 55 0.0012 23.3 3.1 22 42-63 72-94 (190)
88 cd03760 proteasome_beta_type_4 34.2 82 0.0018 21.5 4.0 30 42-71 142-173 (197)
89 PF11181 YflT: Heat induced st 34.1 57 0.0012 20.2 2.9 21 45-65 73-94 (103)
90 TIGR03633 arc_protsome_A prote 34.0 82 0.0018 21.9 4.0 30 42-71 168-197 (224)
91 TIGR01791 CM_archaeal chorisma 33.9 1E+02 0.0022 18.1 4.7 42 30-71 35-80 (83)
92 cd03758 proteasome_beta_type_2 33.8 79 0.0017 21.6 3.8 29 42-70 140-168 (193)
93 TIGR03690 20S_bact_beta protea 33.3 80 0.0017 22.1 3.9 30 42-71 144-173 (219)
94 cd00435 ACBP Acyl CoA binding 33.2 62 0.0013 19.7 2.9 22 50-71 61-82 (85)
95 PRK03996 proteasome subunit al 32.4 85 0.0018 22.2 3.9 30 42-71 175-204 (241)
96 COG3937 Uncharacterized conser 32.2 62 0.0013 21.0 2.8 30 42-71 26-57 (108)
97 PRK14128 iraD DNA replication/ 32.2 34 0.00073 20.2 1.5 28 51-79 1-28 (69)
98 PTZ00488 Proteasome subunit be 32.0 87 0.0019 22.6 4.0 30 42-71 175-204 (247)
99 cd04439 DEP_1_P-Rex DEP (Dishe 31.8 77 0.0017 19.2 3.1 34 35-69 28-61 (81)
100 PF03333 PapB: Adhesin biosynt 31.3 72 0.0016 20.0 3.0 34 25-61 28-62 (91)
101 PF00887 ACBP: Acyl CoA bindin 30.3 48 0.001 19.8 2.1 23 49-71 62-84 (87)
102 PF08784 RPA_C: Replication pr 30.1 90 0.0019 19.0 3.3 26 42-69 68-93 (102)
103 TIGR03691 20S_bact_alpha prote 30.1 1.3E+02 0.0029 21.4 4.6 30 42-71 162-191 (228)
104 PF13387 DUF4105: Domain of un 30.0 41 0.00089 22.8 1.9 33 49-82 101-133 (176)
105 PF13708 Methyltransf_27: Meth 30.0 1.9E+02 0.0042 20.0 5.3 58 27-85 14-75 (194)
106 KOG0890|consensus 29.8 2.6E+02 0.0056 27.3 7.1 70 2-71 2281-2367(2382)
107 cd03757 proteasome_beta_type_1 29.8 1.1E+02 0.0023 21.3 4.0 30 42-71 145-183 (212)
108 PF02146 SIR2: Sir2 family; I 29.5 22 0.00047 24.0 0.4 11 28-38 5-15 (178)
109 cd03199 GST_C_GRX2 GST_C famil 29.2 1.4E+02 0.0031 19.7 4.3 19 30-48 25-43 (128)
110 PF14788 EF-hand_10: EF hand; 28.6 1.2E+02 0.0025 17.1 3.3 26 40-65 5-30 (51)
111 cd01906 proteasome_protease_Hs 28.5 1.4E+02 0.0031 19.5 4.3 30 42-71 139-168 (182)
112 PLN02956 PSII-Q subunit 28.3 1.3E+02 0.0028 21.4 4.1 15 49-63 76-90 (185)
113 COG2442 Uncharacterized conser 28.1 53 0.0012 19.9 1.9 42 30-71 20-66 (79)
114 cd01912 proteasome_beta protea 28.0 1.3E+02 0.0027 20.1 4.0 30 42-71 137-166 (189)
115 cd01410 SIRT7 SIRT7: Eukaryoti 27.8 25 0.00054 24.7 0.5 13 27-39 11-23 (206)
116 PF08383 Maf_N: Maf N-terminal 27.8 51 0.0011 17.2 1.6 13 50-62 20-32 (35)
117 PF08671 SinI: Anti-repressor 27.7 91 0.002 15.6 2.7 22 42-63 6-27 (30)
118 cd03749 proteasome_alpha_type_ 27.1 1.3E+02 0.0027 20.9 4.0 30 42-71 164-195 (211)
119 PF13174 TPR_6: Tetratricopept 26.6 77 0.0017 14.3 2.2 15 54-68 15-29 (33)
120 PRK05333 NAD-dependent deacety 26.3 25 0.00054 25.9 0.3 13 27-39 30-42 (285)
121 cd03527 RuBisCO_small Ribulose 26.0 68 0.0015 20.4 2.2 21 48-68 7-27 (99)
122 PTZ00246 proteasome subunit al 26.0 1.4E+02 0.0029 21.3 4.1 30 42-71 172-201 (253)
123 cd07996 WGR_MMR_like WGR domai 25.6 85 0.0018 17.9 2.5 19 53-71 50-68 (74)
124 PF01221 Dynein_light: Dynein 25.4 25 0.00055 21.3 0.1 34 41-74 21-54 (89)
125 PTZ00408 NAD-dependent deacety 25.2 36 0.00077 24.6 0.9 13 27-39 15-27 (242)
126 cd08811 CARD_IPS1 Caspase acti 25.2 1.2E+02 0.0025 18.9 3.1 40 9-49 3-42 (84)
127 TIGR01803 CM-like chorismate m 25.1 1.6E+02 0.0034 17.4 4.9 42 30-71 35-80 (82)
128 COG2973 TrpR Trp operon repres 25.0 2E+02 0.0043 18.5 5.1 54 2-62 16-70 (103)
129 PF11314 DUF3117: Protein of u 24.8 44 0.00095 18.8 1.0 17 47-63 29-45 (51)
130 PRK12821 aspartyl/glutamyl-tRN 24.7 1.3E+02 0.0029 24.3 4.0 24 40-63 392-415 (477)
131 cd07994 WGR WGR domain. The WG 24.3 92 0.002 18.2 2.5 20 52-71 49-68 (73)
132 cd01409 SIRT4 SIRT4: Eukaryoti 24.1 32 0.00069 25.1 0.5 13 27-39 19-31 (260)
133 PF02885 Glycos_trans_3N: Glyc 23.9 73 0.0016 18.1 1.9 20 51-70 13-32 (66)
134 COG3355 Predicted transcriptio 23.9 2.3E+02 0.0049 18.8 4.8 40 48-88 20-69 (126)
135 TIGR01797 CM_P_1 chorismate mu 23.8 1.7E+02 0.0037 17.4 5.1 42 30-71 35-80 (83)
136 PF13812 PPR_3: Pentatricopept 23.5 81 0.0018 14.4 1.8 20 15-34 14-33 (34)
137 smart00182 CULLIN Cullin. 23.3 2.1E+02 0.0046 18.3 4.9 12 57-68 45-56 (142)
138 PF15574 Imm28: Immunity prote 23.1 2.3E+02 0.005 18.8 4.4 49 38-87 47-98 (123)
139 PF10962 DUF2764: Protein of u 23.0 67 0.0015 23.9 2.0 31 29-59 7-42 (271)
140 cd05163 TRRAP TRansformation/t 22.9 1.5E+02 0.0033 21.5 3.8 28 3-30 218-245 (253)
141 KOG3801|consensus 22.8 1.9E+02 0.0042 18.3 3.8 52 19-71 7-61 (94)
142 cd00296 SIR2 SIR2 superfamily 22.7 69 0.0015 22.0 2.0 13 28-40 12-24 (222)
143 PF07141 Phage_term_sma: Putat 22.3 1.2E+02 0.0027 20.7 3.0 24 23-46 114-138 (174)
144 PRK07075 isochorismate-pyruvat 21.9 2.1E+02 0.0046 17.8 5.1 42 42-85 58-100 (101)
145 PF08855 DUF1825: Domain of un 21.8 2.4E+02 0.0051 18.3 5.9 62 13-75 9-83 (108)
146 PF08708 PriCT_1: Primase C te 21.6 1.7E+02 0.0037 16.5 5.3 45 23-67 18-67 (71)
147 cd03764 proteasome_beta_archea 21.5 1.8E+02 0.0039 19.4 3.8 29 43-71 137-165 (188)
148 TIGR03595 Obg_CgtA_exten Obg f 21.3 1.8E+02 0.004 16.8 3.4 27 40-68 16-42 (69)
149 PF13143 DUF3986: Protein of u 21.3 1.1E+02 0.0024 19.2 2.4 17 52-68 70-86 (88)
150 PF08767 CRM1_C: CRM1 C termin 21.3 3.6E+02 0.0077 20.1 6.5 71 14-84 232-313 (319)
151 PRK14288 chaperone protein Dna 21.1 3.1E+02 0.0067 20.9 5.4 48 32-81 10-67 (369)
152 COG1378 Predicted transcriptio 21.1 2.1E+02 0.0046 20.7 4.3 36 50-86 11-55 (247)
153 PF08730 Rad33: Rad33; InterP 20.9 3.1E+02 0.0066 19.2 5.0 44 11-54 115-169 (170)
154 smart00773 WGR Proposed nuclei 20.7 1.2E+02 0.0026 17.9 2.5 23 53-75 56-78 (84)
155 PF11311 DUF3114: Protein of u 20.7 3E+02 0.0064 20.4 5.0 26 40-65 97-123 (249)
156 cd01408 SIRT1 SIRT1: Eukaryoti 20.6 44 0.00096 23.9 0.7 13 28-40 12-24 (235)
157 PF11515 Cul7: Mouse developme 20.6 67 0.0014 19.7 1.3 20 35-54 3-23 (78)
158 PF09682 Holin_LLH: Phage holi 20.6 2E+02 0.0044 18.0 3.7 28 41-68 73-103 (108)
159 PF12760 Zn_Tnp_IS1595: Transp 20.1 1E+02 0.0022 16.3 1.9 12 54-65 2-13 (46)
160 PF11157 DUF2937: Protein of u 20.1 48 0.001 22.8 0.7 25 14-38 2-26 (167)
No 1
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=99.97 E-value=9.3e-31 Score=197.45 Aligned_cols=86 Identities=37% Similarity=0.578 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++||+||++||+|+++|++||+||++|||||++..+++.++++||+|++||+||..||.++|++|++ +|+|++||
T Consensus 269 ~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~~i~~l~~rf~l~~se~eA~~~f~~lI~~s~~-s~~t~~~~ 347 (354)
T cd00895 269 HDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLEDLKYVYDALRPQDTEADATTYFTRLIESSLG-SVATKLNF 347 (354)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-hhhHhHHH
Confidence 47999999999999999999999999999999999999889999999999999999999999999999998 89999999
Q ss_pred HHHHhhh
Q psy11388 81 ASHNLAK 87 (90)
Q Consensus 81 ~iH~~a~ 87 (90)
++|++||
T Consensus 348 ~~H~~aq 354 (354)
T cd00895 348 FIHNLAQ 354 (354)
T ss_pred HHHHhcC
Confidence 9999998
No 2
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=99.97 E-value=1.1e-30 Score=197.00 Aligned_cols=86 Identities=34% Similarity=0.608 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++||+||++||+|+++|++||+||++||||||++.+|+.++++||+|++||+||..||.++|++|++ +|+|++||
T Consensus 268 ~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~~i~~l~~r~~l~~sd~ea~~~f~~lI~~s~~-s~~t~~~~ 346 (353)
T cd05176 268 QLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQDLKYVYDALQPQTTDAEATIFFTRLIESSLG-SVATKFNF 346 (353)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-chhHhHHH
Confidence 36999999999999999999999999999999999998889999999999999999999999999999998 79999999
Q ss_pred HHHHhhh
Q psy11388 81 ASHNLAK 87 (90)
Q Consensus 81 ~iH~~a~ 87 (90)
++|++||
T Consensus 347 ~~H~~aq 353 (353)
T cd05176 347 FIHNLAQ 353 (353)
T ss_pred HHHHhcC
Confidence 9999998
No 3
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.97 E-value=1.2e-30 Score=197.50 Aligned_cols=87 Identities=36% Similarity=0.765 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++|++||++||+|+++|++||+||++||||||++.+++.+|++||+|++||+||.++|.++|++|++++|+|++||
T Consensus 280 ~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~~~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~ 359 (366)
T cd05175 280 ERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDW 359 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehH
Confidence 37999999999999999999999999999999999999889999999999999999999999999999999899999999
Q ss_pred HHHHhhh
Q psy11388 81 ASHNLAK 87 (90)
Q Consensus 81 ~iH~~a~ 87 (90)
++|++||
T Consensus 360 ~~H~~~~ 366 (366)
T cd05175 360 IFHTIKQ 366 (366)
T ss_pred HHHhhcC
Confidence 9999997
No 4
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=99.96 E-value=3.6e-29 Score=188.94 Aligned_cols=86 Identities=36% Similarity=0.581 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++||+||++||+|+++|++||++|+++||||+++.+|+.++++||+|++||+||..||.++|++|++ +|+|++||
T Consensus 269 ~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~~i~~l~~~~~l~~sd~eA~~~f~~lI~~s~~-~~~~~~~~ 347 (354)
T cd05177 269 QRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQDLKYVYNNLRPQDTDLEATSYFTKKIKESLE-CFPVKLNN 347 (354)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-hhHHhHHH
Confidence 36999999999999999999999999999999999998889999999999999999999999999999998 79999999
Q ss_pred HHHHhhh
Q psy11388 81 ASHNLAK 87 (90)
Q Consensus 81 ~iH~~a~ 87 (90)
++|++||
T Consensus 348 ~~H~~aq 354 (354)
T cd05177 348 LIHTLAQ 354 (354)
T ss_pred HHHHhcC
Confidence 9999998
No 5
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=99.96 E-value=6.8e-29 Score=187.86 Aligned_cols=88 Identities=49% Similarity=0.936 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
+.|+++|++||++||+|+++|++||++|++||+||+++.++|.+|++||+|++||+||+.+|.++|++|++++|+|++||
T Consensus 275 ~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~ 354 (362)
T cd05173 275 GRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNW 354 (362)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 37999999999999999999999999999999999998889999999999999999999999999999998799999999
Q ss_pred HHHHhhhc
Q psy11388 81 ASHNLAKN 88 (90)
Q Consensus 81 ~iH~~a~~ 88 (90)
++|++||.
T Consensus 355 ~~H~~~~~ 362 (362)
T cd05173 355 MAHTVRKD 362 (362)
T ss_pred HHHHhccC
Confidence 99999973
No 6
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.96 E-value=6.2e-29 Score=187.97 Aligned_cols=86 Identities=57% Similarity=1.028 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWA 81 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~ 81 (90)
.|+++|++||++||+|+++|++||+||++||||||+..+++.+|++||+|++||+||+++|.++|++|++++|+|++||+
T Consensus 276 ~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~ 355 (361)
T cd05174 276 RFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWL 355 (361)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHH
Confidence 79999999999999999999999999999999999988899999999999999999999999999999977999999999
Q ss_pred HHHhhh
Q psy11388 82 SHNLAK 87 (90)
Q Consensus 82 iH~~a~ 87 (90)
+|++|+
T Consensus 356 ~H~~a~ 361 (361)
T cd05174 356 AHNVSK 361 (361)
T ss_pred HHhhcC
Confidence 999986
No 7
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.95 E-value=1.3e-28 Score=186.49 Aligned_cols=86 Identities=36% Similarity=0.729 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++|++||++||+|+++|++||+||++||||||+..+++.+|++||+|++||+||+++|.++|++|++++|+|++||
T Consensus 279 ~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~~~~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~ 358 (365)
T cd00894 279 QKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNW 358 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHH
Confidence 36999999999999999999999999999999999998889999999999999999999999999999998789999999
Q ss_pred HHHHhh
Q psy11388 81 ASHNLA 86 (90)
Q Consensus 81 ~iH~~a 86 (90)
++|++|
T Consensus 359 ~~h~~~ 364 (365)
T cd00894 359 FLHLVL 364 (365)
T ss_pred HHHHhc
Confidence 999987
No 8
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=99.95 E-value=1.9e-28 Score=185.67 Aligned_cols=87 Identities=51% Similarity=0.908 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
+.|+++|++||++||+|+++|++||+||++||||||+.++++.++++||+|++||+||.++|.++|++|++++|+|++||
T Consensus 280 ~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~~~~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~ 359 (366)
T cd05165 280 QRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTSKEDIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNW 359 (366)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHH
Confidence 37999999999999999999999999999999999998889999999999999999999999999999998789999999
Q ss_pred HHHHhhh
Q psy11388 81 ASHNLAK 87 (90)
Q Consensus 81 ~iH~~a~ 87 (90)
++|++|+
T Consensus 360 ~~H~~~~ 366 (366)
T cd05165 360 FSHLVLK 366 (366)
T ss_pred HHHHhcC
Confidence 9999985
No 9
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=99.95 E-value=9.1e-28 Score=181.28 Aligned_cols=85 Identities=41% Similarity=0.654 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWA 81 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~ 81 (90)
.|+++|++||++||+|+++|++|+++|+++||||+++.+++.++++||+|++||+||+.+|.++|++|++ +|+|++||+
T Consensus 269 ~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~-s~~t~~~~~ 347 (353)
T cd05166 269 DFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFTKMIQSSLG-SAFTKLNFF 347 (353)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-hhHHHHHHH
Confidence 6999999999999999999999999999999999998889999999999999999999999999999997 899999999
Q ss_pred HHHhhh
Q psy11388 82 SHNLAK 87 (90)
Q Consensus 82 iH~~a~ 87 (90)
+|++||
T Consensus 348 ~H~~aq 353 (353)
T cd05166 348 IHNLAQ 353 (353)
T ss_pred HHHhcC
Confidence 999997
No 10
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=99.94 E-value=1.5e-26 Score=174.58 Aligned_cols=86 Identities=44% Similarity=0.749 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
+.|+++|++||++||+|++.|++|+++|+++|+||+++.+++.++++||+|++||+||..+|.++|++|++ +|+|++||
T Consensus 267 ~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~-~~~~~~~~ 345 (352)
T cd00891 267 QRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSIEDIEYLRDALALDKSDEEATEYFRKLIHESLN-SKTTKVNN 345 (352)
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-cchHhHHH
Confidence 36999999999999999999999999999999999998889999999999999999999999999999998 79999999
Q ss_pred HHHHhhh
Q psy11388 81 ASHNLAK 87 (90)
Q Consensus 81 ~iH~~a~ 87 (90)
++|++||
T Consensus 346 ~~h~~~~ 352 (352)
T cd00891 346 FIHNLAH 352 (352)
T ss_pred HHHHhhC
Confidence 9999997
No 11
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=99.93 E-value=4.1e-26 Score=169.95 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++|++||++||+|+++|++|+++|++||+|||+ .+++.++++||+|++||+||+.+|.++|++|++ +|+|++||
T Consensus 224 ~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~-~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~-~~~t~~yD 301 (311)
T cd05167 224 KWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR-GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYE-KFRTKGYD 301 (311)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-chhHHHHH
Confidence 3799999999999999999999999999999999999 689999999999999999999999999999998 79999999
Q ss_pred HHHHhhhc
Q psy11388 81 ASHNLAKN 88 (90)
Q Consensus 81 ~iH~~a~~ 88 (90)
.+|.+.++
T Consensus 302 ~~q~~~~g 309 (311)
T cd05167 302 QFQYYQNG 309 (311)
T ss_pred HHHHHhcC
Confidence 99999875
No 12
>KOG0904|consensus
Probab=99.93 E-value=2.2e-26 Score=186.71 Aligned_cols=85 Identities=58% Similarity=0.992 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++|.+||++||+|.++|++||+||+++|+||+++.+||+|+|+.|.++.|||||.+||...+++|+++||+|++||
T Consensus 991 ~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss~~Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW 1070 (1076)
T KOG0904|consen 991 QKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSSKKDIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNW 1070 (1076)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy11388 81 ASHNL 85 (90)
Q Consensus 81 ~iH~~ 85 (90)
++|++
T Consensus 1071 ~~H~v 1075 (1076)
T KOG0904|consen 1071 LFHNV 1075 (1076)
T ss_pred hhhhc
Confidence 99985
No 13
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=99.93 E-value=1.1e-25 Score=169.71 Aligned_cols=87 Identities=30% Similarity=0.562 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCC--hhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSS--EKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSL 78 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~--~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~ 78 (90)
+.|+++|++||++||+|+++|++|+++|+++|+||++. .+++.++++||+|++||+||..+|.++|++|++ +|+|++
T Consensus 261 ~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~~lI~~s~~-~~~t~~ 339 (350)
T cd00896 261 QEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQNLINDSVN-ALFPVV 339 (350)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-hhHHHH
Confidence 47999999999999999999999999999999999995 357999999999999999999999999999998 799999
Q ss_pred HHHHHHhhhc
Q psy11388 79 NWASHNLAKN 88 (90)
Q Consensus 79 ~d~iH~~a~~ 88 (90)
||++|+|||.
T Consensus 340 ~d~~h~~aq~ 349 (350)
T cd00896 340 VDRLHAWAQY 349 (350)
T ss_pred HHHHHHHHhh
Confidence 9999999984
No 14
>KOG0905|consensus
Probab=99.92 E-value=1.8e-25 Score=185.23 Aligned_cols=87 Identities=34% Similarity=0.531 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
|.|++|||+|||++|||.++++||+.+|+.+|||++++.+|++|+++.|+++.||-||..+|.++|+.|++ ||.|++|+
T Consensus 1262 q~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln~i~dLkYV~~aL~pq~td~eAT~~FTkmIqsSLg-s~~tklNf 1340 (1639)
T KOG0905|consen 1262 QDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQDLKYVYNALRPQDTDAEATVQFTKMIQSSLG-SAFTKLNF 1340 (1639)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCccchhhHHHHHhhcCcccCChhHHHHHHHHHHHHhh-hHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHhhhc
Q psy11388 81 ASHNLAKN 88 (90)
Q Consensus 81 ~iH~~a~~ 88 (90)
+||++||-
T Consensus 1341 fiHnLAQm 1348 (1639)
T KOG0905|consen 1341 FIHNLAQM 1348 (1639)
T ss_pred HHHHHHHH
Confidence 99999994
No 15
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=99.92 E-value=1.3e-24 Score=160.52 Aligned_cols=86 Identities=28% Similarity=0.436 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|+++|++||++||+|++.|++++++|+++|+||++ .+++.++++||+|++||+||+++|.++|++|++ +|+|++||
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~-~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~-~~~t~~yD 279 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR-GSTIKKLKERLCLNMSEKEAINTVMKKIDSSYN-SITTKLYD 279 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-hhhHHHHH
Confidence 3699999999999999999999999999999999999 589999999999999999999999999999998 79999999
Q ss_pred HHHHhhhc
Q psy11388 81 ASHNLAKN 88 (90)
Q Consensus 81 ~iH~~a~~ 88 (90)
.+|.+.++
T Consensus 280 ~~q~~~~g 287 (289)
T cd00893 280 KVQYYQNG 287 (289)
T ss_pred HHHHHHCC
Confidence 99999875
No 16
>KOG0906|consensus
Probab=99.90 E-value=1.3e-23 Score=167.23 Aligned_cols=87 Identities=30% Similarity=0.511 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChh--HHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEK--DVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSL 78 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~--~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~ 78 (90)
++|+.+|++||++||+++++|+|||++|.+++||+++.++ .|-++++||+|+||||+|.+||+++|++|++ +..+.+
T Consensus 753 q~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~-AL~~~v 831 (843)
T KOG0906|consen 753 QEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVN-ALFPQV 831 (843)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5899999999999999999999999999999999999764 5999999999999999999999999999999 689999
Q ss_pred HHHHHHhhhc
Q psy11388 79 NWASHNLAKN 88 (90)
Q Consensus 79 ~d~iH~~a~~ 88 (90)
-|.||.+||-
T Consensus 832 ~d~ih~~aqy 841 (843)
T KOG0906|consen 832 VDLIHRLAQY 841 (843)
T ss_pred HHHHHHHHHh
Confidence 9999999984
No 17
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=99.90 E-value=3.7e-23 Score=153.07 Aligned_cols=86 Identities=28% Similarity=0.410 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhC-CCCCCC-ChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIST-GLPELS-SEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLN 79 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~s-giP~l~-~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~ 79 (90)
.|+++|++||++||+|++.|++++++|+.+ |+|||+ +..++.++++||+|++||+||+.+|.++|++|++ +|+|++|
T Consensus 204 ~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~-~~~t~~y 282 (293)
T cd05168 204 YFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLD-NWRTRLY 282 (293)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-chhHHHH
Confidence 699999999999999999999999999976 999999 5678999999999999999999999999999998 7999999
Q ss_pred HHHHHhhhc
Q psy11388 80 WASHNLAKN 88 (90)
Q Consensus 80 d~iH~~a~~ 88 (90)
|.+|.+.++
T Consensus 283 D~~q~~~~g 291 (293)
T cd05168 283 DKFQYLTNG 291 (293)
T ss_pred HHHHHHhcC
Confidence 999999875
No 18
>KOG0903|consensus
Probab=99.86 E-value=2.1e-21 Score=156.16 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhh-CCCCCCCCh-hHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIS-TGLPELSSE-KDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLN 79 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~-sgiP~l~~~-~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~ 79 (90)
+|+.||.++|.++|||++.|+.|+++|.+ ||+|||+++ .+++.|++||+|++||||...++..+|.+|++ ||+|++|
T Consensus 758 yfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~kS~~-S~~TrlY 836 (847)
T KOG0903|consen 758 YFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLISKSLD-SITTRLY 836 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccChHHHHHHHHHhcccccHHHHHHHHHHHHhhccc-chhhhhh
Confidence 69999999999999999999999999995 999999985 58999999999999999999999999999998 8999999
Q ss_pred HHHHHhhhc
Q psy11388 80 WASHNLAKN 88 (90)
Q Consensus 80 d~iH~~a~~ 88 (90)
|.++++-++
T Consensus 837 D~fQyitnG 845 (847)
T KOG0903|consen 837 DSFQYITNG 845 (847)
T ss_pred HHHHHHhcc
Confidence 999987654
No 19
>KOG0902|consensus
Probab=99.84 E-value=5.3e-21 Score=160.83 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy11388 1 MLFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNW 80 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d 80 (90)
++|.++|++||+++|++++-|+++|.+|++||+|||++ +.|..++.||.+++||.||+.++..+|.+|++ +|+|+.||
T Consensus 1715 ~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg-~~i~nl~~RF~pemsereAa~fm~~vi~~~~~-~~rt~~YD 1792 (1803)
T KOG0902|consen 1715 KWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRG-QTIGNLRARFAPEMSEREAALFMLSVITDSYL-KIRTKMYD 1792 (1803)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCc-chHHHHHHhhCcccchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 47999999999999999999999999999999999987 59999999999999999999999999999998 79999999
Q ss_pred HHHHhhhc
Q psy11388 81 ASHNLAKN 88 (90)
Q Consensus 81 ~iH~~a~~ 88 (90)
.|+.+.++
T Consensus 1793 ~~Q~~~n~ 1800 (1803)
T KOG0902|consen 1793 QIQYLQNG 1800 (1803)
T ss_pred HHHHHhcC
Confidence 99998764
No 20
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.71 E-value=1.9e-08 Score=89.46 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhhC------CCCCCC-Ch-hHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCch
Q psy11388 3 FNTQCERAFKILREHGSLILSLFAMMIST------GLPELS-SE-KDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSW 74 (90)
Q Consensus 3 F~~lc~~ay~~lR~~~~lil~L~~lM~~s------giP~l~-~~-~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~ 74 (90)
|+++|+.+|.+||++++.|++.+++|+.. +.||++ .. .++..+.+||++++++.++..++..+|.+++. +.
T Consensus 2006 Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~-~l 2084 (2105)
T COG5032 2006 FRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVE-SL 2084 (2105)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHH-HH
Confidence 99999999999999999999999999988 999999 32 36777889999999999999999999999998 78
Q ss_pred hHHHHHHHHHhhh
Q psy11388 75 KTSLNWASHNLAK 87 (90)
Q Consensus 75 ~t~~~d~iH~~a~ 87 (90)
.|..+|-.|...+
T Consensus 2085 i~~a~d~~~L~~~ 2097 (2105)
T COG5032 2085 ITQATDPFQLATM 2097 (2105)
T ss_pred HHHHcCHHHHHhh
Confidence 9999998887665
No 21
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=97.69 E-value=5.6e-05 Score=53.00 Aligned_cols=38 Identities=45% Similarity=0.860 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCCh
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSE 39 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~ 39 (90)
.|+..|+++|.+||+|.+.|++++++|+..++||+...
T Consensus 163 ~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 163 LFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 69999999999999999999999999999999999863
No 22
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=96.68 E-value=0.0035 Score=44.13 Aligned_cols=36 Identities=31% Similarity=0.629 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCC
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELS 37 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~ 37 (90)
.|+..|+.++.+||+|.+.|++++++|+..++++.+
T Consensus 199 ~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 199 LFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 589999999999999999999999999999999875
No 23
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=96.54 E-value=0.0033 Score=44.60 Aligned_cols=29 Identities=38% Similarity=0.777 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIS 30 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~ 30 (90)
.|+..|+++|.+||+|++.|++++++|+.
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~~~ 218 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLR 218 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHhcc
Confidence 69999999999999999999999999974
No 24
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=95.28 E-value=0.027 Score=40.63 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIS 30 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~ 30 (90)
.|+..|+.++.+||+|++.|++++++++.
T Consensus 201 ~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~ 229 (237)
T cd00892 201 LFRKSCEVTLRLLRSNKETLMSVLETFIH 229 (237)
T ss_pred chHHHHHHHHHHHHhCHHHHHHHHHHHhh
Confidence 59999999999999999999999999985
No 25
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=94.95 E-value=0.039 Score=39.43 Aligned_cols=28 Identities=21% Similarity=0.739 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHh
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMI 29 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~ 29 (90)
.|+..|+.++.+||+|.+.|++++++++
T Consensus 193 ~f~~~~~~~~~~Lr~~~~~l~s~l~~fv 220 (222)
T cd05164 193 LFRKICEQTLEVFRKHRDTLIAFLEVFV 220 (222)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 5899999999999999999999999876
No 26
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=94.57 E-value=0.049 Score=39.91 Aligned_cols=30 Identities=23% Similarity=0.597 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhC
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIST 31 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~s 31 (90)
.|+..|+.++.+||+|.+.|++++++|+.-
T Consensus 244 ~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~d 273 (280)
T cd05169 244 TFRTTCEDVMNVLRENKESLMAVLEAFVHD 273 (280)
T ss_pred chHHHHHHHHHHHhcChHHHHHHHHHHHhC
Confidence 489999999999999999999999999853
No 27
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=93.41 E-value=0.12 Score=38.03 Aligned_cols=31 Identities=23% Similarity=0.645 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCC
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTG 32 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sg 32 (90)
.|...|..++.+||++.+.|++++++++.-.
T Consensus 243 ~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dp 273 (279)
T cd05171 243 VFRRCCEKTLEVLRDNKDAILTILEVLLYDP 273 (279)
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHhCc
Confidence 4899999999999999999999999998543
No 28
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=89.65 E-value=0.55 Score=33.84 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIS 30 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~ 30 (90)
.|+..|+.++.+||++.+.|++++++++.
T Consensus 199 ~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~ 227 (235)
T cd05172 199 LLRSCMVHTLRALRNERHLLLSTMDVFVK 227 (235)
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHhh
Confidence 48999999999999999999999999874
No 29
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=87.90 E-value=0.82 Score=34.17 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIS 30 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~ 30 (90)
.|+..|+.++.+||++.+.|++++++.+.
T Consensus 271 ~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~ 299 (307)
T cd05170 271 VFRLSCEQVLHIMRRGRETLLTLLEAFVY 299 (307)
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHhh
Confidence 58999999999999999999999999874
No 30
>PLN02150 terpene synthase/cyclase family protein
Probab=86.94 E-value=0.74 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=21.1
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 44 YLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 44 ~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
|+++. +.|+|||.+++.++|.++
T Consensus 13 YMke~---g~seeeA~~~i~~li~~~ 35 (96)
T PLN02150 13 YMKQH---GVTKEEAVSELKKMIRDN 35 (96)
T ss_pred HhccC---CCCHHHHHHHHHHHHHHH
Confidence 78886 999999999999999876
No 31
>KOG2001|consensus
Probab=80.84 E-value=8.5 Score=32.33 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=52.0
Q ss_pred HHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q psy11388 23 SLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHN 84 (90)
Q Consensus 23 ~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~ 84 (90)
.|......+.-|.+++++.+.++.++..=.++|..|.....++.+++.. -+.+-++.++|-
T Consensus 224 ~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~-~Y~~mLe~Wi~~ 284 (734)
T KOG2001|consen 224 RLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQ-PYCTMLEEWIYQ 284 (734)
T ss_pred HHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc-hHHHHHHHHHhc
Confidence 3444445678899999999999999999999999999999999999987 577888877764
No 32
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=78.37 E-value=6.6 Score=22.25 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCCCCCCChh---HHHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 31 TGLPELSSEK---DVNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 31 sgiP~l~~~~---~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
+|+|-|+.++ .++.+++=..=++|.-||...+.+.|++...
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 6899999753 5888888888899999999999999998654
No 33
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=76.32 E-value=5.4 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=28.2
Q ss_pred CCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 36 LSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 36 l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
|.+.+-|+||.+.+..-.|.+||...-+.++++.+
T Consensus 30 F~G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~ 64 (83)
T cd04449 30 FIGSEAVSWLINNFEDVDTREEAVELGQELMNEGL 64 (83)
T ss_pred eEhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455689999988877899999999999988643
No 34
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=74.25 E-value=7.3 Score=22.65 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+.++||.+.+.. .+.+||...-+.+++.
T Consensus 28 ~F~G~e~v~WL~~~~~~-~~r~ea~~~~~~ll~~ 60 (81)
T cd04371 28 CFTGSELVDWLLDNLEA-ITREEAVELGQALLKH 60 (81)
T ss_pred eeEcHHHHHHHHHhCCC-CCHHHHHHHHHHHHHC
Confidence 66776779999998865 8999999998888765
No 35
>PRK05114 hypothetical protein; Provisional
Probab=71.81 E-value=12 Score=21.71 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCCCCCCChh---HHHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 31 TGLPELSSEK---DVNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 31 sgiP~l~~~~---~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
+|+|-|+..+ .++++++=..=++|--||...+...|++...
T Consensus 3 ~~lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~ 46 (59)
T PRK05114 3 AGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQ 46 (59)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHh
Confidence 3899999753 5888888889999999999999999999775
No 36
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=70.18 E-value=13 Score=22.72 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+-++||-+++..-.|.+||..+-..|.+.
T Consensus 29 ~F~GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~ 62 (84)
T cd04438 29 SFIGSDLVDWLLSHVEGLTDRREARKYASSLLKL 62 (84)
T ss_pred cccchHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 5566566999999998778889999998888775
No 37
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=68.98 E-value=9.6 Score=23.23 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+-++||.+.... .+.+||.+.-..+++.
T Consensus 28 ~F~G~~~v~WL~~~~~~-~~~~EA~~~~~~ll~~ 60 (88)
T cd04450 28 AFTGKAIVQWLMDCTDV-VDPSEALEIAALFVKY 60 (88)
T ss_pred eeEhHHHHHHHHHCCCC-CCHHHHHHHHHHHHHC
Confidence 55555668999988764 8899999888887765
No 38
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=68.37 E-value=16 Score=20.15 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 23 SLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 23 ~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
.+..+|..+++-.+....-...|.++|..++++. ..++..+|.+-
T Consensus 8 ~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~~--K~~I~~~I~~~ 52 (54)
T PF08766_consen 8 AIREILREADLDTVTKKQVREQLEERFGVDLSSR--KKFIKELIDEF 52 (54)
T ss_dssp HHHHHHTTS-GGG--HHHHHHHHHHH-SS--SHH--HHHHHHHHHHH
T ss_pred HHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHH
Confidence 4566777888877776555678999999999943 34566666554
No 39
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=68.32 E-value=14 Score=23.34 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=28.3
Q ss_pred CCCChhHHHHHHHHc------cCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETL------VLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl------~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+.|++|.+-+ .++.|-.+|.+..++++..
T Consensus 29 CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~ 68 (92)
T cd04447 29 CFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKN 68 (92)
T ss_pred ccchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHc
Confidence 888888899988875 7799999999888877654
No 40
>KOG0173|consensus
Probab=66.35 E-value=9.8 Score=28.35 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 41 DVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 41 ~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+..|..|+++|||+|||.+....-|.-
T Consensus 171 AmsvlEsr~k~dlt~eea~~Lv~eAi~A 198 (271)
T KOG0173|consen 171 AMSVLESRWKPDLTKEEAIKLVCEAIAA 198 (271)
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHh
Confidence 4778999999999999999776665553
No 41
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=61.16 E-value=13 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
||.+.+-|+||-+... ..|-+||..+-+.++++.+
T Consensus 28 cF~GselVdWL~~~~~-~~sR~eAv~lgq~Ll~~gv 62 (82)
T cd04442 28 CFVGKELIDWLIEHKE-ASDRETAIKIMQKLLDHSI 62 (82)
T ss_pred eeEcHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCC
Confidence 6667677999998754 4899999999999988643
No 42
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=59.98 E-value=21 Score=21.58 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+-|+||-+. ..-.|.+||...-+.|++.
T Consensus 28 cF~GselVdWL~~~-~~~~~R~eAv~~gq~Ll~~ 60 (81)
T cd04448 28 CILGKELVNWLIRQ-GKAATRVQAIAIGQALLDA 60 (81)
T ss_pred ccChHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC
Confidence 55666679999887 3458899999999988875
No 43
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=59.27 E-value=19 Score=25.21 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=26.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|+++...++|.+||.+...+.+.+++.
T Consensus 169 ~~~Lek~~~~dms~eeai~l~~~~L~~~~~ 198 (212)
T cd03751 169 KTELEKLKFSELTCREAVKEAAKIIYIVHD 198 (212)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHhh
Confidence 568999999999999999998888888776
No 44
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=58.61 E-value=22 Score=20.48 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+.+++|.+... -.+.+||.+.-..+++.
T Consensus 20 ~F~G~e~v~wL~~~~~-~~~r~eA~~l~~~ll~~ 52 (77)
T smart00049 20 CFTGSELVDWLMDNLE-IIDREEAVHLGQLLLDE 52 (77)
T ss_pred eeEcHHHHHHHHHcCC-cCCHHHHHHHHHHHHHC
Confidence 5667677999998875 56889999888877764
No 45
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=58.57 E-value=13 Score=21.41 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCCChhHHHHHHHHc-cCCCCHHHHHHHHHHHHHH
Q psy11388 34 PELSSEKDVNYLRETL-VLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 34 P~l~~~~~i~~l~~rl-~l~~sd~eA~~~f~~lI~~ 68 (90)
.||.+.+.|++|.+.+ ....+.+||...-+.+++.
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~ 51 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDH 51 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHC
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHC
Confidence 3566667799999877 4689999999999888865
No 46
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=56.74 E-value=18 Score=22.36 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=28.2
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
||.+.+-|+||-+.. .-.|-+||..+-+.++++.+
T Consensus 32 cF~GsElVdWL~~~~-~~~sR~eAv~lgq~Ll~~gi 66 (85)
T cd04441 32 TFVGSEFIDWLLQEG-EAESRREAVQLCRRLLEHGI 66 (85)
T ss_pred EeEchHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCC
Confidence 566667799999986 56799999999999987643
No 47
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=56.32 E-value=18 Score=25.81 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=32.8
Q ss_pred HHhhCCCCCCCChhH------HHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhh
Q psy11388 27 MMISTGLPELSSEKD------VNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLAK 87 (90)
Q Consensus 27 lM~~sgiP~l~~~~~------i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a~ 87 (90)
+..+||||.|++... ...+.+......++++.-.++...+....+ ...+..+-++..+.+
T Consensus 24 iS~~sGip~FR~~~gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~~-~~Pn~~H~~L~~L~~ 89 (242)
T PRK00481 24 ISAESGIPDFRSANGLWEEHRPEDVASPEGFARDPELVWKFYNERRRQLLD-AKPNAAHRALAELEK 89 (242)
T ss_pred cccccCCCCccCCCcCccCCCHHHhccHHHHhhCHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh
Confidence 445899999998422 222322222235556555666665544333 345666666666553
No 48
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=55.69 E-value=16 Score=25.85 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=29.4
Q ss_pred HHhhCCCCCCCChh------HHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhh
Q psy11388 27 MMISTGLPELSSEK------DVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLAK 87 (90)
Q Consensus 27 lM~~sgiP~l~~~~------~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a~ 87 (90)
+...||||.|++.. +...+-+......+.++.-.++...+....+ .-.+..+-++..+.+
T Consensus 15 iS~~sGIp~FR~~~glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~-a~Pn~~H~~La~L~~ 80 (222)
T cd01413 15 ISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEIILGLLE-AQPNKAHYFLAELEK 80 (222)
T ss_pred hhhhhCCCCccCcCCCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhcccCC-CCCCHHHHHHHHHHh
Confidence 45689999999743 2222222222234455555555555543222 234444545544443
No 49
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.29 E-value=34 Score=19.77 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=34.6
Q ss_pred hCCCCCCCChh---HHHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|.+..++ .++++++=..=++|--||...+..-|++-..
T Consensus 2 ~~~lp~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 2 FAGLPSLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred CCccccccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 46899998753 5888888888899999999999998887544
No 50
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=51.70 E-value=30 Score=23.97 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|++++..++|.+||.+...+.|..+..
T Consensus 171 ~~~L~~~~~~~ls~eeai~l~~~~l~~~~~ 200 (213)
T cd03753 171 QSSLQEKYHKDMTLEEAEKLALSILKQVME 200 (213)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999888887654
No 51
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=51.11 E-value=41 Score=23.04 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=24.8
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 41 DVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 41 ~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
|..++..++.+..|.+|+.....-|.+-
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~~ 68 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEKL 68 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999988877653
No 52
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=50.58 E-value=38 Score=21.36 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=27.5
Q ss_pred CCCChhHHHHHHHHc------cC-CCCHHHHHHHHHHHHHHHh
Q psy11388 35 ELSSEKDVNYLRETL------VL-DLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl------~l-~~sd~eA~~~f~~lI~~s~ 70 (90)
||.+.+.|++|-+-+ .. +.|-+||....+.++++-+
T Consensus 27 CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gv 69 (95)
T cd04446 27 CFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRV 69 (95)
T ss_pred ccchHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCC
Confidence 788878888775544 33 7799999999999887643
No 53
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=49.71 E-value=34 Score=23.75 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|..+...++|.+||.+...+.|.++..
T Consensus 170 ~~~Le~~y~~~ms~eea~~l~~~al~~~~~ 199 (213)
T cd03752 170 QSLLKQDYKDDMTLEEALALAVKVLSKTMD 199 (213)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 357888999999999999999998888875
No 54
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=49.40 E-value=37 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=26.3
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
||.+.+-|+||-+. ..-.|.+||..+-..|++..
T Consensus 30 cF~GselVdWL~~~-~~~~sR~eAv~lg~~Ll~~G 63 (83)
T cd04443 30 VFCGCDLVSWLIEV-GLAQDRGEAVLYGRRLLQGG 63 (83)
T ss_pred cccHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence 55666679999874 45678999999998888764
No 55
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=49.26 E-value=34 Score=24.70 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=26.7
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|...+..++|.+||.....+-|..++.
T Consensus 154 ~~~Lek~yk~~ms~eeai~la~~al~~a~~ 183 (236)
T cd03765 154 KPILDRVITPDTSLEDAAKCALVSMDSTMR 183 (236)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999988876
No 56
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.26 E-value=49 Score=25.94 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHhhh
Q psy11388 41 DVNYLRETLVLDLTEEDAIKHFRSKFGEALAN--SWKTSLNWASHNLAK 87 (90)
Q Consensus 41 ~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~--s~~t~~~d~iH~~a~ 87 (90)
.++-|+++|.-+-+ .+..+.+.|.++-++ =++..+||+|+.+|+
T Consensus 9 ~LeeLe~kLa~~d~---~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~ 54 (379)
T PF11593_consen 9 KLEELEEKLASNDN---SKDSVMDKISEAQDSILPLRLQFNEFIQTMAN 54 (379)
T ss_pred cHHHHHHHHhcCCc---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 47889999984333 566666666655431 368899999999986
No 57
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=48.89 E-value=34 Score=23.38 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=25.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|++....++|.+||.+...+.+..+..
T Consensus 141 ~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 170 (195)
T cd03759 141 YGMCESLWRPDMEPDELFETISQALLSAVD 170 (195)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHh
Confidence 457888899999999999998888887665
No 58
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=48.77 E-value=17 Score=24.47 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=26.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
....|.||...+++++|+...+.+|...+.
T Consensus 9 ~~~~KtRL~~~l~~~~~~~l~~~ll~~~l~ 38 (195)
T TIGR03552 9 LANAKSRLSPVLSPEEREELALAMLRDVIT 38 (195)
T ss_pred CCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998888775
No 59
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=48.77 E-value=44 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=27.2
Q ss_pred CCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 34 PELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 34 P~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
-||-+.+-|+||-+. ..-.|-+||..+-+.|++.-
T Consensus 36 ~cFvGsElVdWLi~~-g~~~tR~eAv~~gq~Ll~~g 70 (93)
T cd04440 36 SVVPASKLVDWLLAQ-GDCRTREEAVILGVGLCNNG 70 (93)
T ss_pred cccchhHHHHHHHHc-CCCCCHHHHHHHHHHHHhCC
Confidence 355566679999887 44459999999999998763
No 60
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=48.13 E-value=34 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=25.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|.+.+.+++|.+||.+...+.+..+..
T Consensus 136 ~~~Le~~~~~~~s~eea~~l~~~~l~~~~~ 165 (188)
T cd03761 136 YGVLDSGYRYDLSVEEAYDLARRAIYHATH 165 (188)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 457888899999999999998888877764
No 61
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=46.83 E-value=40 Score=23.29 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|......++|.+||.+...+-+.++..
T Consensus 167 ~~~Le~~~~~~ms~eeai~l~~~~l~~~~~ 196 (207)
T cd03755 167 REFLEKNYKEEMTRDDTIKLAIKALLEVVQ 196 (207)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence 467889999999999999999988888775
No 62
>KOG2758|consensus
Probab=46.50 E-value=20 Score=28.06 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
|+-|-++ |++++|||+.+..++|+.+--
T Consensus 352 i~mLA~k--Lnm~~eeaErwivnlIr~~rl 379 (432)
T KOG2758|consen 352 IDMLADK--LNMDPEEAERWIVNLIRTARL 379 (432)
T ss_pred HHHHHHH--hcCCHHHHHHHHHHHHHHhhh
Confidence 5555554 678899999999999998743
No 63
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=46.34 E-value=55 Score=19.07 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=32.8
Q ss_pred hCCCCCCCChh---HHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLV-LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -+..+.+... .+++++.+...|..+|..|..
T Consensus 31 ~~~~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~ii~~s~~ 76 (81)
T PF01817_consen 31 ENGLPIFDPDREEEVLERLRELAEEGGLDPEFIERIFRAIIEESRA 76 (81)
T ss_dssp HTTCCSSTHHHHHHHHHHHHHHHHHTTSEHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCcHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHHHHH
Confidence 67899666532 2666777666 999999999999999998764
No 64
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=45.64 E-value=39 Score=22.28 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=28.6
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
||.+.+-|+||-+.+---.|-+||..+-+.|+++.+
T Consensus 30 cF~GsElVdWLl~~~~~v~sR~eAv~lgq~Ll~~gv 65 (125)
T cd04437 30 CCVGTELVDWLLQQSPCVQSRSQAVGMWQVLLEEGV 65 (125)
T ss_pred ccccHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Confidence 566667799999998544689999999999988643
No 65
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=45.27 E-value=24 Score=24.80 Aligned_cols=14 Identities=14% Similarity=0.518 Sum_probs=10.7
Q ss_pred HHhhCCCCCCCChh
Q psy11388 27 MMISTGLPELSSEK 40 (90)
Q Consensus 27 lM~~sgiP~l~~~~ 40 (90)
+..+||||.|++..
T Consensus 11 iS~~sGIp~fR~~~ 24 (224)
T cd01412 11 ISAESGIPTFRDAD 24 (224)
T ss_pred cchhhCCCCccCcC
Confidence 34689999999743
No 66
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=42.78 E-value=51 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|.+.+.+++|.+||.....+.+..+..
T Consensus 135 ~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~ 164 (189)
T cd03763 135 MSVLEDRYKPDMTEEEAKKLVCEAIEAGIF 164 (189)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999888887776654
No 67
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=42.77 E-value=75 Score=19.12 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhcC
Q psy11388 19 SLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLAKNN 89 (90)
Q Consensus 19 ~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a~~~ 89 (90)
+++.-++..|.+.|=| .+..+..+.+.+++ ++||+|...... ...-..-|.-+++|+...+.++.
T Consensus 4 ~~~~piL~~L~~~g~~-~~~~ei~~~v~~~~--~ls~e~~~~~~~---sg~~~~~~~~ri~Wa~~~L~~aG 68 (92)
T PF14338_consen 4 ELMPPILEALKDLGGS-ASRKEIYERVAERF--GLSDEERNERLP---SGQGYSRFKNRIRWARSYLKKAG 68 (92)
T ss_pred HHHHHHHHHHHHcCCC-cCHHHHHHHHHHHh--CCCHHHHHHHcc---cCCcchhHHHhHHHHHHHHHHCC
Confidence 4555666776665544 33335578888888 688886664433 11111147788888888877653
No 68
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=42.50 E-value=55 Score=21.72 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=25.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|++.+..++|.+||.+...+.+..+..
T Consensus 147 ~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~ 176 (190)
T PF00227_consen 147 QPILEKLYKPDLSLEEAIELALKALKEAID 176 (190)
T ss_dssp HHHHHHHHTTTSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988888887664
No 69
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=42.13 E-value=51 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=25.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|++.+..++|.+||.....+.+..+..
T Consensus 137 ~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 166 (185)
T TIGR03634 137 YGVLEDEYREDMSVEEAKKLAVRAIKSAIE 166 (185)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 457888999999999999988887777664
No 70
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=41.68 E-value=54 Score=22.56 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=25.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|+++..+++|.+||.+...+.+..+..
T Consensus 167 ~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~ 196 (209)
T cd01911 167 KTFLEKRYKKDLTLEEAIKLALKALKEVLE 196 (209)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHh
Confidence 457889999999999999988888877665
No 71
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=40.93 E-value=67 Score=19.42 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred hhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 39 EKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 39 ~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+++.++-.--+|+++++|+..+ .+.+++
T Consensus 5 ~e~i~~la~La~l~l~~ee~~~~-~~~l~~ 33 (95)
T PRK00034 5 REEVKHLAKLARLELSEEELEKF-AGQLNK 33 (95)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH-HHHHHH
Confidence 36789999999999999998743 333343
No 72
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=40.72 E-value=56 Score=22.57 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|.++..+++|.+||.+...+.+..+..
T Consensus 167 ~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~ 196 (211)
T cd03756 167 TEFLEKEYKEDMSLEEAIELALKALYAALE 196 (211)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhc
Confidence 467889999999999999988888877665
No 73
>PF14585 CagY_I: CagY type 1 repeat
Probab=40.12 E-value=23 Score=20.66 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.7
Q ss_pred CCCHHHHH--HHHHHHHHHHhc
Q psy11388 52 DLTEEDAI--KHFRSKFGEALA 71 (90)
Q Consensus 52 ~~sd~eA~--~~f~~lI~~s~~ 71 (90)
++|.+||. +||+.+.++|-.
T Consensus 13 DlsneEate~NhFED~~kEskE 34 (65)
T PF14585_consen 13 DLSNEEATEANHFEDLLKESKE 34 (65)
T ss_pred hhhhhhhhhhhhhHHHhhhhhc
Confidence 68888885 799999999765
No 74
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=39.82 E-value=52 Score=19.82 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=27.1
Q ss_pred HHHHHhhC-CCCCCCChhHHHHHHHHccCCCCHHHHHHHHH
Q psy11388 24 LFAMMIST-GLPELSSEKDVNYLRETLVLDLTEEDAIKHFR 63 (90)
Q Consensus 24 L~~lM~~s-giP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~ 63 (90)
.|.||..- |=|.+. ++.+.+.+.+++|++.|.+-..
T Consensus 2 ~flLma~~~~~~~Ip----L~~v~~~yf~~lt~~~a~rk~~ 38 (76)
T PF11112_consen 2 TFLLMAQYFGDPVIP----LEEVCEDYFPHLTPKTAKRKAN 38 (76)
T ss_pred HHHHHHHHcCCCCCc----HHHHHHHHHccCCHHHHHHHHH
Confidence 46777654 666554 7888999999999999886654
No 75
>KOG0174|consensus
Probab=39.65 E-value=35 Score=24.72 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 43 NYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 43 ~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
.|+-..++++||.||+..+..+-+.-++.
T Consensus 156 Gf~D~~~r~nMt~EE~~~fvk~Av~lAi~ 184 (224)
T KOG0174|consen 156 GFCDANWRPNMTLEECVRFVKNAVSLAIE 184 (224)
T ss_pred eeehhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999998877764
No 76
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=38.45 E-value=78 Score=19.16 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.0
Q ss_pred hhHHHHHHHHccCCCCHHHHHHHH
Q psy11388 39 EKDVNYLRETLVLDLTEEDAIKHF 62 (90)
Q Consensus 39 ~~~i~~l~~rl~l~~sd~eA~~~f 62 (90)
.+++.++-.=-+|++||+|+..+.
T Consensus 3 ~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 3 DEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH
Confidence 367888888789999999997443
No 77
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=38.16 E-value=32 Score=24.07 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=28.4
Q ss_pred HhhCCCCCCCChhHH------HHHH-HHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhh
Q psy11388 28 MISTGLPELSSEKDV------NYLR-ETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLAK 87 (90)
Q Consensus 28 M~~sgiP~l~~~~~i------~~l~-~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a~ 87 (90)
..+||||.|++...+ ..+. +.-...-+.++.-.++...+. ... ...+..+.++..+.+
T Consensus 12 S~~sGIpdfR~~~G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~-~~Pn~~H~~L~~L~~ 76 (218)
T cd01407 12 STESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRY-PLN-AQPNPAHRALAELER 76 (218)
T ss_pred ccccCCCcccCCCCccccCChhhccCCHHHHHHCHHHHHHHHHHhhh-hcc-CCCCHHHHHHHHHHh
Confidence 357999999975321 1111 110112234444455555554 333 345556656665554
No 78
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=37.87 E-value=69 Score=22.44 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.4
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|.+....++|.+||.+...+-+.+++.
T Consensus 166 ~~~Le~~~~~~ms~eeai~l~~~~l~~~~~ 195 (227)
T cd03750 166 KTFLEKRYNEDLELEDAIHTAILTLKEGFE 195 (227)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhc
Confidence 568899999999999999988887776654
No 79
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=37.62 E-value=29 Score=20.55 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCchhH
Q psy11388 53 LTEEDAIKHFRSKFGEALANSWKT 76 (90)
Q Consensus 53 ~sd~eA~~~f~~lI~~s~~~s~~t 76 (90)
-|.+||...|++++++-....|..
T Consensus 53 ~s~~eA~~~f~~~~~~K~~~gy~~ 76 (81)
T PF05406_consen 53 DSEEEAIKEFEKLFKEKTGKGYEE 76 (81)
T ss_dssp SSHHHHHHHHHHHHHHHHSSTSCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcc
Confidence 489999999999999877655544
No 80
>PF07138 DUF1386: Protein of unknown function (DUF1386); InterPro: IPR009815 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf11; it is a family of uncharacterised viral proteins.
Probab=37.24 E-value=69 Score=24.53 Aligned_cols=48 Identities=17% Similarity=0.432 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHhchHHHH----------HHHHHHhhCCCCCCCChhHHHHHHHHc
Q psy11388 1 MLFNTQCERAFKILREHGSLIL----------SLFAMMISTGLPELSSEKDVNYLRETL 49 (90)
Q Consensus 1 ~~F~~lc~~ay~~lR~~~~lil----------~L~~lM~~sgiP~l~~~~~i~~l~~rl 49 (90)
+.|-..|.+.|..||.+++.+- .||.||...+-.++.. +.-.|+-++|
T Consensus 265 kdFgr~cKetY~dlk~~~D~Ly~n~~tDk~KNalFDLLC~~na~elD~-dC~~yIv~~F 322 (324)
T PF07138_consen 265 KDFGRHCKETYEDLKDVADALYINATTDKQKNALFDLLCCMNADELDV-DCYDYIVNSF 322 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhhhHHHhhHhcCCHHHhcc-hHHHHHHHHh
Confidence 3688899999999999999765 5777777655555543 2234544444
No 81
>COG4086 Predicted secreted protein [Function unknown]
Probab=36.88 E-value=76 Score=24.10 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q psy11388 18 GSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLA 86 (90)
Q Consensus 18 ~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a 86 (90)
.+.+++++.-|.++++.--+...+++..+++|.=-+-..||...+++.++ +.+.++++|-.+.
T Consensus 235 vn~i~~~~~~~~~~n~d~~kv~~~L~qa~d~l~~~~~~~ea~~il~~i~~------f~ssi~nalvg~f 297 (299)
T COG4086 235 VNQIVNLFLAMSNLNIDWTKVQGQLKQAKDSLKWFLQRDEAKGILERIGD------FLSSIWNALVGIF 297 (299)
T ss_pred HHHHHHHHHHhhccCccHHHhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH------HHHHHHHHHHHhc
Confidence 45688888888887775444444677777777555555566665555443 3455667766554
No 82
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=36.82 E-value=67 Score=20.84 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.7
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
||.+.+-|+||-+... ..|-+||...=+.+++.
T Consensus 31 CF~Gse~VDWLv~~~~-~i~R~EAv~l~q~Lmd~ 63 (109)
T cd04444 31 TFLGSALVDWLISNSF-AASRLEAVTLASMLMEE 63 (109)
T ss_pred cccchHHHHHHHHCCC-CCCHHHHHHHHHHHHhC
Confidence 5566677999998865 44999999888877775
No 83
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=36.50 E-value=95 Score=18.47 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.1
Q ss_pred hCCCCCCCChhH---HHHHHHHcc-CCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEKD---VNYLRETLV-LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~~---i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+..... +..+.+.-. .+++++.+...|..+|..|+.
T Consensus 35 ~~~~~v~d~~RE~~vl~~~~~~a~~~gl~~~~i~~if~~i~~~s~~ 80 (83)
T TIGR01799 35 AAGLPIYAPEREAAMLAARREEAEKAGIAPDLIEDVLRRFMRESYA 80 (83)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 578888876422 445544433 789999999999999999874
No 84
>KOG3430|consensus
Probab=36.21 E-value=34 Score=21.55 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=34.5
Q ss_pred hhCCCCCCCChhHHHHHHHHccC-CCCHHHHHHHHHHHHHHHhcCch
Q psy11388 29 ISTGLPELSSEKDVNYLRETLVL-DLTEEDAIKHFRSKFGEALANSW 74 (90)
Q Consensus 29 ~~sgiP~l~~~~~i~~l~~rl~l-~~sd~eA~~~f~~lI~~s~~~s~ 74 (90)
..|.||+--..+.+.-.++.+-. +-.++.++.++.+-.++.++..|
T Consensus 9 k~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~W 55 (90)
T KOG3430|consen 9 KATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTW 55 (90)
T ss_pred ecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCcc
Confidence 36788877665667666666633 33899999999999999988665
No 85
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=35.73 E-value=71 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.2
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|.+.+..++|.+||.+...+.+..+..
T Consensus 136 ~~~Le~~~~~~~s~~ea~~l~~~al~~~~~ 165 (188)
T cd03762 136 YGYVDANYKPGMTLEECIKFVKNALSLAMS 165 (188)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788889999999999998888887765
No 86
>TIGR01806 CM_mono2 chorismate mutase, putative. This model represents a clade of probable chorismate mutases from alpha, beta and gamma proteobacteria as well as Mycobacterium tuberculosis and a clade of nematodes. Although the most likely function for the enzymes represented by this model is as a chorismate mutase, in no species are these enzymes the sole chorismate mutase in the genome. Also, in no case are these enzymes located in a region of the genome proximal to any other enzymes involved in chorismate pathways. Although the Pantoea enzyme has been shown to complement a CM-free mutant of E. coli, this was also shown to be the case with isochorismate-pyruvate lyase which only has a secondary (non-physiologically relevant) chorismate mutase activity. This enzyme is believed to be a homodimer and be localized to the periplasm.
Probab=35.18 E-value=1.2e+02 Score=19.37 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=31.9
Q ss_pred hCCCCCCCChh---HHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLV-LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~ 71 (90)
.+|+|=+.... -++.+.+.-. .+++++.++..|..+|..|..
T Consensus 29 ~~~~pI~Dp~RE~~Vl~~~~~~a~~~gL~~~~i~~if~~Ii~~Sk~ 74 (114)
T TIGR01806 29 RNNLPIEDSPREEQVLDSLRAQAQSAGLDPDYVTRFFQAQINANKA 74 (114)
T ss_pred HCCCCCCChHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHHHHHH
Confidence 56888777642 2566666664 889999999999999998764
No 87
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=34.51 E-value=55 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.7
Q ss_pred HHHHHHHc-cCCCCHHHHHHHHH
Q psy11388 42 VNYLRETL-VLDLTEEDAIKHFR 63 (90)
Q Consensus 42 i~~l~~rl-~l~~sd~eA~~~f~ 63 (90)
=.+||+|| .+++|.+||+.-..
T Consensus 72 RsfLKerfy~p~lspeeAaaRiK 94 (190)
T PLN02999 72 RSFIKEKYFMPGLSPEDAAARIK 94 (190)
T ss_pred HHHHHHhccCCCCCHHHHHHHHH
Confidence 56899998 66999999985544
No 88
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=34.24 E-value=82 Score=21.47 Aligned_cols=30 Identities=30% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHccC--CCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVL--DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l--~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|.+.+.. ++|.+||.....+.+..+..
T Consensus 142 ~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~ 173 (197)
T cd03760 142 LPLLREAWEKKPDLTEEEARALIEECMKVLYY 173 (197)
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3577888888 99999999888887776654
No 89
>PF11181 YflT: Heat induced stress protein YflT
Probab=34.14 E-value=57 Score=20.18 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=14.9
Q ss_pred HHHHc-cCCCCHHHHHHHHHHH
Q psy11388 45 LRETL-VLDLTEEDAIKHFRSK 65 (90)
Q Consensus 45 l~~rl-~l~~sd~eA~~~f~~l 65 (90)
++++| .+++|++||..|-..+
T Consensus 73 ~~~~l~~lGl~~~ea~~y~~~l 94 (103)
T PF11181_consen 73 LRSKLESLGLSEDEAERYEEEL 94 (103)
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 34444 5899999999776654
No 90
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=33.98 E-value=82 Score=21.93 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.0
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|.+....++|.+||.+...+.+..+..
T Consensus 168 ~~~L~~~~~~~~~~eeai~l~~~al~~~~~ 197 (224)
T TIGR03633 168 TEFLEKEYREDLSLDEAIELALKALYSAVE 197 (224)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHhc
Confidence 357888999999999999888887777665
No 91
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=33.94 E-value=1e+02 Score=18.15 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=29.6
Q ss_pred hCCCCCCCChh---HHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLV-LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~ 71 (90)
.+|.|=+.... -+..+.+.-. .+++++.+...|..+|..|..
T Consensus 35 ~~g~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~i~~~s~~ 80 (83)
T TIGR01791 35 NNGLPITDEEREERVIERLRNTARNLGLDVLKLKEIFEILMSLSKE 80 (83)
T ss_pred HcCCCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 56888777632 1444544333 789999999999999988753
No 92
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=33.79 E-value=79 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
...|.+.+..++|.+||.+...+.+..+.
T Consensus 140 ~~~Le~~~~~~ms~eeai~l~~~a~~~~~ 168 (193)
T cd03758 140 LSILDRYYKPDMTVEEALELMKKCIKELK 168 (193)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 45788888999999999987666665543
No 93
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=33.30 E-value=80 Score=22.06 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|......++|.+||.....+.|.++..
T Consensus 144 ~~~Le~~~~~~ms~eeai~l~~~al~~~~~ 173 (219)
T TIGR03690 144 KGALKKLYSPDLDEDDALRVAVEALYDAAD 173 (219)
T ss_pred HHHHHhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 457888889999999999999888888776
No 94
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=33.23 E-value=62 Score=19.67 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 50 VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 50 ~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
.=++|.+||...+-.++++-+.
T Consensus 61 l~~ms~~eA~~~YV~~~~~l~~ 82 (85)
T cd00435 61 LKGMSKEDAMKAYIAKVEELIA 82 (85)
T ss_pred cCCCCHHHHHHHHHHHHHHHhh
Confidence 3599999999999999998665
No 95
>PRK03996 proteasome subunit alpha; Provisional
Probab=32.45 E-value=85 Score=22.17 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|.+++..++|.+||.+...+-+..+..
T Consensus 175 ~~~Le~~~~~~~s~eeai~l~~~al~~~~~ 204 (241)
T PRK03996 175 MEFLEKNYKEDLSLEEAIELALKALAKANE 204 (241)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHhc
Confidence 467889999999999999988888888765
No 96
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.17 E-value=62 Score=21.05 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHc--cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETL--VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl--~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
++.|-+-+ .=++|.+||..++..+++++-.
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~ 57 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKE 57 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44555544 3489999999999999987654
No 97
>PRK14128 iraD DNA replication/recombination/repair protein; Provisional
Probab=32.16 E-value=34 Score=20.19 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy11388 51 LDLTEEDAIKHFRSKFGEALANSWKTSLN 79 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~~~s~~t~~~ 79 (90)
++.||.+....+.+.|..++. .+=+++.
T Consensus 1 ~~~~~~~~r~~i~~~I~~aI~-~fEPRL~ 28 (69)
T PRK14128 1 HNVSDKRLQSWYCRQLRSALL-FHEPRIA 28 (69)
T ss_pred CCcccHHHHHHHHHHHHHHHH-HcCCCCC
Confidence 578999999999999999997 5666654
No 98
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=32.05 E-value=87 Score=22.58 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+.+..+..
T Consensus 175 ~~~Le~~~k~dms~eEai~l~~kal~~~~~ 204 (247)
T PTZ00488 175 YGVLDAGFKWDLNDEEAQDLGRRAIYHATF 204 (247)
T ss_pred HHHHHhcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 457888899999999999988888877765
No 99
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=31.79 E-value=77 Score=19.15 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 35 ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 35 ~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
||.+.+-|+||-+.... -+.+||...-..|++..
T Consensus 28 cF~GselVdWL~~~~~~-~~r~eAv~lg~~Ll~~G 61 (81)
T cd04439 28 CFLGNEFVSWLLEIGEI-SKPEEGVNLGQALLENG 61 (81)
T ss_pred eeEhHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCC
Confidence 44565679999987633 24689998888888763
No 100
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=31.31 E-value=72 Score=19.98 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=20.4
Q ss_pred HHHHh-hCCCCCCCChhHHHHHHHHccCCCCHHHHHHH
Q psy11388 25 FAMMI-STGLPELSSEKDVNYLRETLVLDLTEEDAIKH 61 (90)
Q Consensus 25 ~~lM~-~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~ 61 (90)
|.+++ -|+ +++++.|..|++-|..+.|..||.+.
T Consensus 28 F~lLl~ls~---IrS~kiI~AL~dyLV~G~srkeac~~ 62 (91)
T PF03333_consen 28 FWLLLELSS---IRSEKIIAALRDYLVDGLSRKEACER 62 (91)
T ss_dssp HHHHHHHS-------HHHHHHHHHHHTT---HHHHHHH
T ss_pred HHHHHHHCC---CCcHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44444 345 45556789999999999999999853
No 101
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=30.35 E-value=48 Score=19.85 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=19.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 49 LVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 49 l~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
-.=++|.+||...|-+++++-+.
T Consensus 62 ~l~gms~~eA~~~Yi~~v~~~~~ 84 (87)
T PF00887_consen 62 ALKGMSKEEAMREYIELVEELIP 84 (87)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHH
Confidence 34589999999999999988664
No 102
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=30.09 E-value=90 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
++.+.++| ++++++.+..+..|+.+-
T Consensus 68 v~~I~~~l--~~~~~~v~~al~~L~~eG 93 (102)
T PF08784_consen 68 VDEIAQQL--GMSENEVRKALDFLSNEG 93 (102)
T ss_dssp HHHHHHHS--TS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHh--CcCHHHHHHHHHHHHhCC
Confidence 88899999 999999999999999874
No 103
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=30.06 E-value=1.3e+02 Score=21.36 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=26.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|.+++..++|.+||.....+.+..++.
T Consensus 162 ~~~Lek~y~~~ms~eeai~la~~aL~~~~~ 191 (228)
T TIGR03691 162 ATALKESYRDGLSLADALGLAVQALRAGGN 191 (228)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Confidence 568899999999999999999998888753
No 104
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=30.00 E-value=41 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=24.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy11388 49 LVLDLTEEDAIKHFRSKFGEALANSWKTSLNWAS 82 (90)
Q Consensus 49 l~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~i 82 (90)
..|++|.+|....+..+.+.+.... .+-.|+++
T Consensus 101 y~LnLs~ee~~~l~~~l~e~~~~~~-~~~~Y~f~ 133 (176)
T PF13387_consen 101 YPLNLSPEEKQRLFRHLWENANPEN-RPYRYNFF 133 (176)
T ss_pred EEeeCCHHHHHHHHHHHHHhccccc-cceeehhh
Confidence 6799999999999999998874433 44455544
No 105
>PF13708 Methyltransf_27: Methyltransferase domain
Probab=29.97 E-value=1.9e+02 Score=20.03 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHhhCCCCCCCChhHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q psy11388 27 MMISTGLPELSSEKDVNYLRET----LVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNL 85 (90)
Q Consensus 27 lM~~sgiP~l~~~~~i~~l~~r----l~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~ 85 (90)
+|-.+|+-.+-..+.-+.+.+. =.|+.|++-....|..++...-. .+-..+.|.|..+
T Consensus 14 l~~~t~~~~~m~~~~r~~~~~~l~~~~~p~ft~~NI~~t~~~l~~~r~~-~~~~~v~~vF~~L 75 (194)
T PF13708_consen 14 LMDKTGMRSFMSAQARDEWDKQLEEDDPPEFTEENIYSTFEQLHANRGE-IFERGVIDVFRSL 75 (194)
T ss_pred HHHhhCcHhHhCHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHh
Confidence 4445566555554443344333 45888888888888888877665 5666677666554
No 106
>KOG0890|consensus
Probab=29.79 E-value=2.6e+02 Score=27.30 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHh-h------------CCCCCCCChhHHHHHHHHccC----CCCHHHHHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMI-S------------TGLPELSSEKDVNYLRETLVL----DLTEEDAIKHFRS 64 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~-~------------sgiP~l~~~~~i~~l~~rl~l----~~sd~eA~~~f~~ 64 (90)
.|++-|+.+-..+|+|.+.+++.++-.+ + |+.|=......+..+++|++= +--+=-.+.+...
T Consensus 2281 ~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~ 2360 (2382)
T KOG0890|consen 2281 SFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASS 2360 (2382)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHH
Confidence 4999999999999999999999888877 4 333333222346666777643 2122333446667
Q ss_pred HHHHHhc
Q psy11388 65 KFGEALA 71 (90)
Q Consensus 65 lI~~s~~ 71 (90)
||++|.+
T Consensus 2361 LI~eATs 2367 (2382)
T KOG0890|consen 2361 LIEEATS 2367 (2382)
T ss_pred HHHHhcC
Confidence 8888875
No 107
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=29.77 E-value=1.1e+02 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHcc---------CCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLV---------LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~---------l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|++.+. .++|++||.....+-+..+..
T Consensus 145 ~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~ 183 (212)
T cd03757 145 QPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAE 183 (212)
T ss_pred HHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345666664 899999999888887776654
No 108
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=29.54 E-value=22 Score=24.03 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=7.6
Q ss_pred HhhCCCCCCCC
Q psy11388 28 MISTGLPELSS 38 (90)
Q Consensus 28 M~~sgiP~l~~ 38 (90)
..+||||.|++
T Consensus 5 S~~SGIpdfR~ 15 (178)
T PF02146_consen 5 STASGIPDFRS 15 (178)
T ss_dssp GGGGT--SSSS
T ss_pred chhhCCCcccc
Confidence 45899999998
No 109
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=29.23 E-value=1.4e+02 Score=19.73 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=14.9
Q ss_pred hCCCCCCCChhHHHHHHHH
Q psy11388 30 STGLPELSSEKDVNYLRET 48 (90)
Q Consensus 30 ~sgiP~l~~~~~i~~l~~r 48 (90)
.+|+|||...+...|.+++
T Consensus 25 ~~~lpEFaT~~A~~yf~~k 43 (128)
T cd03199 25 KADLPEFATQSARDYFIEK 43 (128)
T ss_pred cCCCCccCCHHHHHHHHHH
Confidence 5789999987777777655
No 110
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=28.56 E-value=1.2e+02 Score=17.07 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=17.5
Q ss_pred hHHHHHHHHccCCCCHHHHHHHHHHH
Q psy11388 40 KDVNYLRETLVLDLTEEDAIKHFRSK 65 (90)
Q Consensus 40 ~~i~~l~~rl~l~~sd~eA~~~f~~l 65 (90)
+.+..+-....++++|+-|...|+.-
T Consensus 5 ~Evk~lLk~~NI~~~~~yA~~LFq~~ 30 (51)
T PF14788_consen 5 KEVKKLLKMMNIEMDDEYARQLFQEC 30 (51)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCHHHHHHHHHHh
Confidence 45778888899999999999887653
No 111
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=28.46 E-value=1.4e+02 Score=19.52 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|......++|.+||.....+.+..+..
T Consensus 139 ~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~ 168 (182)
T cd01906 139 LGILEKLYKPDMTLEEAIELALKALKSALE 168 (182)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHc
Confidence 567888999999999999888887777665
No 112
>PLN02956 PSII-Q subunit
Probab=28.34 E-value=1.3e+02 Score=21.37 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.4
Q ss_pred ccCCCCHHHHHHHHH
Q psy11388 49 LVLDLTEEDAIKHFR 63 (90)
Q Consensus 49 l~l~~sd~eA~~~f~ 63 (90)
+.+++|.|||+.-..
T Consensus 76 ~~p~~speeA~ar~k 90 (185)
T PLN02956 76 TAPERTVEEAESGVR 90 (185)
T ss_pred cCCCCCHHHHHHHHH
Confidence 478999999985443
No 113
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=28.09 E-value=53 Score=19.95 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=31.9
Q ss_pred hCCCCCCCChh-HHHHHHHHccCCCCHHHHHHHHH----HHHHHHhc
Q psy11388 30 STGLPELSSEK-DVNYLRETLVLDLTEEDAIKHFR----SKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~-~i~~l~~rl~l~~sd~eA~~~f~----~lI~~s~~ 71 (90)
..|=||+++-. .+.-+-+.+..+.|++|-...|- ..|..|+.
T Consensus 20 ~gGkP~I~GtRI~V~~Il~~l~~G~s~eeil~dyp~Lt~~dI~aal~ 66 (79)
T COG2442 20 CGGKPCIRGTRIPVWDILEMLAAGESIEEILADYPDLTLEDIRAALR 66 (79)
T ss_pred cCCcceEeCceecHHHHHHHHHCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 36889999854 47778888889999999998886 45555553
No 114
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=27.97 E-value=1.3e+02 Score=20.09 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|+..+.+++|.+||.+...+-+..+..
T Consensus 137 ~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~ 166 (189)
T cd01912 137 YGILDRGYKPDMTLEEAVELVKKAIDSAIE 166 (189)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 457888899999999999877776665543
No 115
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=27.77 E-value=25 Score=24.69 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.4
Q ss_pred HHhhCCCCCCCCh
Q psy11388 27 MMISTGLPELSSE 39 (90)
Q Consensus 27 lM~~sgiP~l~~~ 39 (90)
+..+||||.|++.
T Consensus 11 iS~~SGIP~fR~~ 23 (206)
T cd01410 11 ISTSAGIPDFRGP 23 (206)
T ss_pred ccHhhCCCcccCc
Confidence 3468999999974
No 116
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=27.76 E-value=51 Score=17.19 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=10.1
Q ss_pred cCCCCHHHHHHHH
Q psy11388 50 VLDLTEEDAIKHF 62 (90)
Q Consensus 50 ~l~~sd~eA~~~f 62 (90)
.+++|.|+|.+..
T Consensus 20 ~l~LtpEDAvEaL 32 (35)
T PF08383_consen 20 ALGLTPEDAVEAL 32 (35)
T ss_pred hcCCCHHHHHHHH
Confidence 5789999998654
No 117
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.69 E-value=91 Score=15.55 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHccCCCCHHHHHHHHH
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFR 63 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~ 63 (90)
+.-+++....++|.+|-.+|+.
T Consensus 6 ~~Li~eA~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 6 VELIKEAKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5667888888899888887765
No 118
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=27.12 E-value=1.3e+02 Score=20.88 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=24.7
Q ss_pred HHHHHHHcc--CCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLV--LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~--l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|.+.+. .++|.+||.+...+.+.+++.
T Consensus 164 ~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~ 195 (211)
T cd03749 164 RTYLERHFEEFEDCSLEELIKHALRALRETLP 195 (211)
T ss_pred HHHHHHhhccccCCCHHHHHHHHHHHHHHHhc
Confidence 456777877 699999999998888888775
No 119
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=26.58 E-value=77 Score=14.33 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHH
Q psy11388 54 TEEDAIKHFRSKFGE 68 (90)
Q Consensus 54 sd~eA~~~f~~lI~~ 68 (90)
.-++|...|+.+|++
T Consensus 15 ~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 457788888888875
No 120
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=26.33 E-value=25 Score=25.87 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=10.5
Q ss_pred HHhhCCCCCCCCh
Q psy11388 27 MMISTGLPELSSE 39 (90)
Q Consensus 27 lM~~sgiP~l~~~ 39 (90)
+..+||||.|++.
T Consensus 30 iS~~SGIPdFR~~ 42 (285)
T PRK05333 30 ISTDSGIPDYRDR 42 (285)
T ss_pred cccccCCCcccCC
Confidence 4568999999974
No 121
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=25.97 E-value=68 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=16.7
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.+++||+|-.+.++.+|++
T Consensus 7 sylp~lt~~~i~~QI~yll~q 27 (99)
T cd03527 7 SYLPPLTDEQIAKQIDYIISN 27 (99)
T ss_pred ccCCCCCHHHHHHHHHHHHhC
Confidence 357889999988888888765
No 122
>PTZ00246 proteasome subunit alpha; Provisional
Probab=25.97 E-value=1.4e+02 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=25.0
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|......++|.+||.+...+-+..+..
T Consensus 172 ~~~Le~~~~~~ms~eeai~l~~~al~~~~~ 201 (253)
T PTZ00246 172 QSILKQEWKEDLTLEQGLLLAAKVLTKSMD 201 (253)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 457888899999999999988887777654
No 123
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=25.55 E-value=85 Score=17.94 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q psy11388 53 LTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 53 ~sd~eA~~~f~~lI~~s~~ 71 (90)
-|.++|...|++++++-..
T Consensus 50 ~s~~~A~~~~~k~~~~K~~ 68 (74)
T cd07996 50 DSEEEALKAAEKLIREKLK 68 (74)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4789999999999988665
No 124
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=25.41 E-value=25 Score=21.27 Aligned_cols=34 Identities=12% Similarity=0.349 Sum_probs=23.8
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCch
Q psy11388 41 DVNYLRETLVLDLTEEDAIKHFRSKFGEALANSW 74 (90)
Q Consensus 41 ~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~ 74 (90)
.++..++.+.--.++.|+++++.+-.++..+..|
T Consensus 21 ~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~W 54 (89)
T PF01221_consen 21 AIELAKEALKKYQDEKEIAEFIKQELDKKYGPTW 54 (89)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-E
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCce
Confidence 3555666666555888888888888888776544
No 125
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=25.24 E-value=36 Score=24.64 Aligned_cols=13 Identities=8% Similarity=0.340 Sum_probs=10.4
Q ss_pred HHhhCCCCCCCCh
Q psy11388 27 MMISTGLPELSSE 39 (90)
Q Consensus 27 lM~~sgiP~l~~~ 39 (90)
+..+||||.|++.
T Consensus 15 iS~~SGIPdFR~~ 27 (242)
T PTZ00408 15 ISAESGISTFRDG 27 (242)
T ss_pred hhhhhCCCcccCC
Confidence 3458999999984
No 126
>cd08811 CARD_IPS1 Caspase activation and recruitment domain (CARD) found in IPS-1. Caspase activation and recruitment domain (CARD) found in IPS-1 (Interferon beta promoter stimulator protein 1), also known as CARDIF, VISA or MAVS. IPS-1 is an adaptor protein that plays an important role in interferon induction in response to viral infection. It is crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. The CARD of IPS-1 associates with the CARDs of two RNA helicases, RIG-I and MDA5, which bind viral DNA in the cytoplasm during the initial stage of intracellular antiviral response, leading to the induction of type I interferons. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homo
Probab=25.17 E-value=1.2e+02 Score=18.90 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=25.1
Q ss_pred HHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHc
Q psy11388 9 RAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETL 49 (90)
Q Consensus 9 ~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl 49 (90)
+-|..+|++...|++.--+=+=--+||+.. .|-+.++...
T Consensus 3 k~~k~I~~n~~~Fc~i~v~eiLP~LpCLT~-~Dqe~i~a~~ 42 (84)
T cd08811 3 KTYKYIRRNMSRFCTVDVVEILPYLPCLTA-SDQEEIRAKQ 42 (84)
T ss_pred HHHHHHHHhhccceeeeHHHhcCccccCch-hhHHHHcchh
Confidence 357889999998887322222346999986 4444444433
No 127
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=25.11 E-value=1.6e+02 Score=17.43 Aligned_cols=42 Identities=12% Similarity=-0.121 Sum_probs=31.2
Q ss_pred hCCCCCCCChh---HHHHHHHHc-cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETL-VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl-~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|.|=+.... -+..+++.- ..+++++-+...|..+|..|+.
T Consensus 35 ~~~~~v~d~~Re~~vl~~~~~~a~~~gl~~~~~~~if~~ii~~si~ 80 (82)
T TIGR01803 35 SHEAAIPAPERVAAVLPNAARWAEENGLDPPFVEGLFAQIIHWYIA 80 (82)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 45888776532 255565554 3899999999999999999874
No 128
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=25.02 E-value=2e+02 Score=18.53 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhh-CCCCCCCChhHHHHHHHHccCCCCHHHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMIS-TGLPELSSEKDVNYLRETLVLDLTEEDAIKHF 62 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~-sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f 62 (90)
.|.++|++||.. +.-.-|+++|+. +-...+ +..+..+.+=+.=++|..|-+.-.
T Consensus 16 ~fv~ll~~a~~~-----d~~~~lL~llLTpdEReal--~~Rv~Iv~eLL~ge~sQREi~~~L 70 (103)
T COG2973 16 AFVDLLKKAYQE-----DLHQPLLTLLLTPDEREAL--GTRVRIVEELLRGELSQREIAQKL 70 (103)
T ss_pred HHHHHHHHHHHh-----HHHHHHHHHHcCHhHHHHH--HHHHHHHHHHHhccccHHHHHHHh
Confidence 589999999873 344455666653 110000 012556677777888888776543
No 129
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.83 E-value=44 Score=18.80 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHccCCCCHHHHHHHHH
Q psy11388 47 ETLVLDLTEEDAIKHFR 63 (90)
Q Consensus 47 ~rl~l~~sd~eA~~~f~ 63 (90)
.||.+++|++||.+.-.
T Consensus 29 GRLVvEl~~~Ea~~L~~ 45 (51)
T PF11314_consen 29 GRLVVELNPDEAKELGE 45 (51)
T ss_pred cEEEEEeCHHHHHHHHH
Confidence 47889999999986544
No 130
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=24.69 E-value=1.3e+02 Score=24.33 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.1
Q ss_pred hHHHHHHHHccCCCCHHHHHHHHH
Q psy11388 40 KDVNYLRETLVLDLTEEDAIKHFR 63 (90)
Q Consensus 40 ~~i~~l~~rl~l~~sd~eA~~~f~ 63 (90)
++++++.+=-++++||||.+++-.
T Consensus 392 EeVkKLAkLARLeLSEEElEkl~~ 415 (477)
T PRK12821 392 DELKKLARLVMFDLDDAELEKLQV 415 (477)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHH
Confidence 578999888899999999995543
No 131
>cd07994 WGR WGR domain. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs) as well as the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, a small family of bacterial DNA ligases, and various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain occurs in single-domain proteins and in a variety of domain architectures, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=24.32 E-value=92 Score=18.22 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q psy11388 52 DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~ 71 (90)
-.|.++|...|.+++.+-..
T Consensus 49 ~~s~~~A~~~f~kl~~~Kt~ 68 (73)
T cd07994 49 MPSKEEAEEHFMKLYEEKTG 68 (73)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 34789999999999987554
No 132
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.10 E-value=32 Score=25.07 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.5
Q ss_pred HHhhCCCCCCCCh
Q psy11388 27 MMISTGLPELSSE 39 (90)
Q Consensus 27 lM~~sgiP~l~~~ 39 (90)
+...||||.|++.
T Consensus 19 iSt~SGIPdFR~~ 31 (260)
T cd01409 19 ISTESGIPDYRSE 31 (260)
T ss_pred eehhhCCCCCCCc
Confidence 4557999999984
No 133
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=23.92 E-value=73 Score=18.08 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy11388 51 LDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~ 70 (90)
-++|.+|+...|..+++..+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~ 32 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEV 32 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 67788888877777776544
No 134
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=23.92 E-value=2.3e+02 Score=18.81 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=27.9
Q ss_pred HccCCCCHHHHHHHHHHH----------HHHHhcCchhHHHHHHHHHhhhc
Q psy11388 48 TLVLDLTEEDAIKHFRSK----------FGEALANSWKTSLNWASHNLAKN 88 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~l----------I~~s~~~s~~t~~~d~iH~~a~~ 88 (90)
++.+++|+.+..-++.-+ |.+.++-+ .+.+|-.++++...
T Consensus 20 ~c~~GLs~~Dv~v~~~LL~~~~~~tvdelae~lnr~-rStv~rsl~~L~~~ 69 (126)
T COG3355 20 KCVYGLSELDVEVYKALLEENGPLTVDELAEILNRS-RSTVYRSLQNLLEA 69 (126)
T ss_pred HHHhCCcHHHHHHHHHHHhhcCCcCHHHHHHHHCcc-HHHHHHHHHHHHHc
Confidence 467788888888777655 67778754 56667677776543
No 135
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=23.80 E-value=1.7e+02 Score=17.36 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=31.8
Q ss_pred hCCCCCCCChh---HHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLV-LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~ 71 (90)
.+|+|=+.... -+..+.+.-. .+++++.++..|..+|..|..
T Consensus 35 ~~~~~v~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if~~ii~~S~~ 80 (83)
T TIGR01797 35 LSHRPVRDIERERDLLQRLITLGKAYHLDAHYITRLFQLIIEDSVL 80 (83)
T ss_pred HcCCCCCChHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Confidence 57888777642 2566666654 889999999999999998763
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.51 E-value=81 Score=14.40 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=14.7
Q ss_pred HhchHHHHHHHHHHhhCCCC
Q psy11388 15 REHGSLILSLFAMMISTGLP 34 (90)
Q Consensus 15 R~~~~lil~L~~lM~~sgiP 34 (90)
+...+....++..|...|++
T Consensus 14 ~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 14 AGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred CCCHHHHHHHHHHHHHhCCC
Confidence 45566778888888887764
No 137
>smart00182 CULLIN Cullin.
Probab=23.31 E-value=2.1e+02 Score=18.31 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy11388 57 DAIKHFRSKFGE 68 (90)
Q Consensus 57 eA~~~f~~lI~~ 68 (90)
+....++.++++
T Consensus 45 ~~~~kle~Ml~D 56 (142)
T smart00182 45 EFTSKLERMFRD 56 (142)
T ss_pred HHHHHHHHHHHH
Confidence 334444445544
No 138
>PF15574 Imm28: Immunity protein 28
Probab=23.15 E-value=2.3e+02 Score=18.80 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHc---cCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhh
Q psy11388 38 SEKDVNYLRETL---VLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLAK 87 (90)
Q Consensus 38 ~~~~i~~l~~rl---~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a~ 87 (90)
++.+++.+-=|. .++-|+++|.+.-+-+|+ |....+-+-+|..||.-..
T Consensus 47 sp~diqa~mI~ili~~l~ys~~~A~~~~qf~I~-~Tdk~fhPT~~aIIHRGie 98 (123)
T PF15574_consen 47 SPTDIQAAMIRILIEKLGYSTEAAAQFCQFVID-CTDKEFHPTMYAIIHRGIE 98 (123)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccccccCccHHHHHHcchH
Confidence 344555433332 567899999988888887 4555677888999997543
No 139
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=23.00 E-value=67 Score=23.95 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=25.6
Q ss_pred hhCCCCCCCChh-----HHHHHHHHccCCCCHHHHH
Q psy11388 29 ISTGLPELSSEK-----DVNYLRETLVLDLTEEDAI 59 (90)
Q Consensus 29 ~~sgiP~l~~~~-----~i~~l~~rl~l~~sd~eA~ 59 (90)
+.||+|+++-++ ++.-+++-+.+++|++++.
T Consensus 7 lvagLP~~~ldd~kl~~~~~~f~~el~~~lS~~D~~ 42 (271)
T PF10962_consen 7 LVAGLPEISLDDSKLPYTVAEFKEELYPNLSAKDAK 42 (271)
T ss_pred EeecCCCCCcccCcccCcHHHHHHHHHHhcCHHHHH
Confidence 468999999642 4788899999999999887
No 140
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=22.91 E-value=1.5e+02 Score=21.45 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy11388 3 FNTQCERAFKILREHGSLILSLFAMMIS 30 (90)
Q Consensus 3 F~~lc~~ay~~lR~~~~lil~L~~lM~~ 30 (90)
|..-|+.+-.+||++...+.+.+++.+.
T Consensus 218 f~~~~~~~~~~Lr~~~~~l~~~L~~fi~ 245 (253)
T cd05163 218 LTSSMMAIARCLTEPEFDLENALQLFIR 245 (253)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHc
Confidence 7888999999999999999999888663
No 141
>KOG3801|consensus
Probab=22.80 E-value=1.9e+02 Score=18.28 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHHHHh--hCCCCCCCChh-HHHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 19 SLILSLFAMMI--STGLPELSSEK-DVNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 19 ~lil~L~~lM~--~sgiP~l~~~~-~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+++|...++ +--+|...-.+ .+...++.|+-+.+..+-+ .++++++++-+
T Consensus 7 ~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~-e~~~l~~eakk 61 (94)
T KOG3801|consen 7 RQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPA-EIKKLYKEAKK 61 (94)
T ss_pred HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHHHH
Confidence 45778888888 44688776544 5888999999999877766 56667776654
No 142
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=22.66 E-value=69 Score=22.03 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=10.1
Q ss_pred HhhCCCCCCCChh
Q psy11388 28 MISTGLPELSSEK 40 (90)
Q Consensus 28 M~~sgiP~l~~~~ 40 (90)
..+||||.+++..
T Consensus 12 S~~sGiP~fr~~~ 24 (222)
T cd00296 12 STESGIPDFRGLG 24 (222)
T ss_pred ccccCCCCccccc
Confidence 4579999999744
No 143
>PF07141 Phage_term_sma: Putative bacteriophage terminase small subunit; InterPro: IPR010789 This entry is represented by Bacteriophage 712, Gp1; it is a family of uncharacterised viral proteins. This family consists of several putative Lactococcus bacteriophage terminase small subunit proteins. The exact function of this family is unknown.
Probab=22.33 E-value=1.2e+02 Score=20.68 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHHHHh-hCCCCCCCChhHHHHHH
Q psy11388 23 SLFAMMI-STGLPELSSEKDVNYLR 46 (90)
Q Consensus 23 ~L~~lM~-~sgiP~l~~~~~i~~l~ 46 (90)
+|+.||+ .+|-|++-....-..|+
T Consensus 114 slvammvakagnpelynptewrrlq 138 (174)
T PF07141_consen 114 SLVAMMVAKAGNPELYNPTEWRRLQ 138 (174)
T ss_pred hHHHHHHHhcCCccccChHHHHHHH
Confidence 7889998 79999998754444444
No 144
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=21.93 E-value=2.1e+02 Score=17.80 Aligned_cols=42 Identities=14% Similarity=-0.050 Sum_probs=30.0
Q ss_pred HHHHHHHcc-CCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q psy11388 42 VNYLRETLV-LDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNL 85 (90)
Q Consensus 42 i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~ 85 (90)
++.+++.-. .+++++.++..|..+|..|+. .-.+-++.-|.+
T Consensus 58 l~~~~~~a~~~gl~~~~i~~if~~Ii~~~i~--~q~~~~~~~~~~ 100 (101)
T PRK07075 58 LPERRRWAEQAGLDADFVEKLFAQLIHWYIA--QQIKHWRQQRGL 100 (101)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHhccc
Confidence 455555544 889999999999999999886 345555544443
No 145
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=21.79 E-value=2.4e+02 Score=18.29 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHhchHHHHHHH-HHHh-hCCCCCCCChh------HHHHHHHH-----ccCCCCHHHHHHHHHHHHHHHhcCchh
Q psy11388 13 ILREHGSLILSLF-AMMI-STGLPELSSEK------DVNYLRET-----LVLDLTEEDAIKHFRSKFGEALANSWK 75 (90)
Q Consensus 13 ~lR~~~~lil~L~-~lM~-~sgiP~l~~~~------~i~~l~~r-----l~l~~sd~eA~~~f~~lI~~s~~~s~~ 75 (90)
+++.....|..+- .+|. .+.+|.+..+. ....|-+| -++.|||+..++.+...|+.+.+ .++
T Consensus 9 iVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~-~fG 83 (108)
T PF08855_consen 9 IVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLN-QFG 83 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HcC
Confidence 3555666555433 3343 56788888642 22233222 13445555555566777777666 455
No 146
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=21.63 E-value=1.7e+02 Score=16.52 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=27.0
Q ss_pred HHHHHHhhCCCCCCC-----ChhHHHHHHHHccCCCCHHHHHHHHHHHHH
Q psy11388 23 SLFAMMISTGLPELS-----SEKDVNYLRETLVLDLTEEDAIKHFRSKFG 67 (90)
Q Consensus 23 ~L~~lM~~sgiP~l~-----~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~ 67 (90)
.+...+...|++... -..-+..+=+.+...|+++|...-+.+..+
T Consensus 18 ~~a~~~~~~~v~~~~~~~~~v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 18 RLARRLAYRGVDQEEQFRQEVLSLAQAINSNFSPPLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 334444455666554 222344555667899999998876655543
No 147
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.54 E-value=1.8e+02 Score=19.44 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 43 NYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 43 ~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|......++|.+||.+...+.++.+..
T Consensus 137 ~~L~~~~~~~~~~~ea~~l~~~~l~~~~~ 165 (188)
T cd03764 137 GVLEDEYKEDMTVEEAKKLAIRAIKSAIE 165 (188)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 46777789999999999887777766554
No 148
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=21.35 E-value=1.8e+02 Score=16.83 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=20.8
Q ss_pred hHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 40 KDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 40 ~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
+.|+++-.+ .+++++||..+|++.++.
T Consensus 16 ~~ier~~~~--~~~~~~e~~~~f~~~L~~ 42 (69)
T TIGR03595 16 KKIERWVAK--TPFNNDENLRRFARKLKK 42 (69)
T ss_pred hHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 456666655 677899999999998875
No 149
>PF13143 DUF3986: Protein of unknown function (DUF3986)
Probab=21.33 E-value=1.1e+02 Score=19.16 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy11388 52 DLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~ 68 (90)
+++++++...|++.+.+
T Consensus 70 Dl~~e~gs~~FE~WLk~ 86 (88)
T PF13143_consen 70 DLSEEEGSKIFEEWLKE 86 (88)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 89999999999987754
No 150
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.26 E-value=3.6e+02 Score=20.13 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHhchHHHHHHHHHHh--hCCCCCCC---ChhH--HHHHHHHc---cCCCCHHHHHHHHHHHHHHHh-cCchhHHHHHHH
Q psy11388 14 LREHGSLILSLFAMMI--STGLPELS---SEKD--VNYLRETL---VLDLTEEDAIKHFRSKFGEAL-ANSWKTSLNWAS 82 (90)
Q Consensus 14 lR~~~~lil~L~~lM~--~sgiP~l~---~~~~--i~~l~~rl---~l~~sd~eA~~~f~~lI~~s~-~~s~~t~~~d~i 82 (90)
++.++..+..||.+-- .-..|-.. ...+ -+++.+.| .+++++++...+..++++..- ...+.+.+-|++
T Consensus 232 f~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFl 311 (319)
T PF08767_consen 232 FKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFL 311 (319)
T ss_dssp HHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4556666777776633 22344433 1111 23444443 499999999999999998765 124667777765
Q ss_pred HH
Q psy11388 83 HN 84 (90)
Q Consensus 83 H~ 84 (90)
=.
T Consensus 312 I~ 313 (319)
T PF08767_consen 312 IQ 313 (319)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 151
>PRK14288 chaperone protein DnaJ; Provisional
Probab=21.15 E-value=3.1e+02 Score=20.94 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCCCCChhHHH----HHHHHccCCCCH--HHHHHHHHHHHHHHhcCchh----HHHHHH
Q psy11388 32 GLPELSSEKDVN----YLRETLVLDLTE--EDAIKHFRSKFGEALANSWK----TSLNWA 81 (90)
Q Consensus 32 giP~l~~~~~i~----~l~~rl~l~~sd--~eA~~~f~~lI~~s~~~s~~----t~~~d~ 81 (90)
|+|-=.+.++|. .|.-+.+||.+. .+|++.| +.|++|+. ..+ -++||.
T Consensus 10 gv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f-~~i~~AYe-vLsd~~kR~~YD~ 67 (369)
T PRK14288 10 EVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKF-KLINEAYG-VLSDEKKRALYDR 67 (369)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHH-HHHHHHHH-HhccHHHHHHHHH
Confidence 455545555664 466678999974 6677776 45888775 333 456664
No 152
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=21.05 E-value=2.1e+02 Score=20.70 Aligned_cols=36 Identities=22% Similarity=0.055 Sum_probs=26.9
Q ss_pred cCCCCHHHHHHHHHHHH---------HHHhcCchhHHHHHHHHHhh
Q psy11388 50 VLDLTEEDAIKHFRSKF---------GEALANSWKTSLNWASHNLA 86 (90)
Q Consensus 50 ~l~~sd~eA~~~f~~lI---------~~s~~~s~~t~~~d~iH~~a 86 (90)
.|++|+-||..|..-+. .+..+ -=+|++||.+-.+.
T Consensus 11 ~lGlt~yEa~vY~aLl~~g~~tA~eis~~sg-vP~~kvY~vl~sLe 55 (247)
T COG1378 11 KLGLTEYEAKVYLALLCLGEATAKEISEASG-VPRPKVYDVLRSLE 55 (247)
T ss_pred HcCCCHHHHHHHHHHHHhCCccHHHHHHHcC-CCchhHHHHHHHHH
Confidence 58999999998887554 44444 45789999887764
No 153
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=20.90 E-value=3.1e+02 Score=19.23 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=30.5
Q ss_pred HHHHHhchHHHHHHHHHHhhCCC--CCCC---------ChhHHHHHHHHccCCCC
Q psy11388 11 FKILREHGSLILSLFAMMISTGL--PELS---------SEKDVNYLRETLVLDLT 54 (90)
Q Consensus 11 y~~lR~~~~lil~L~~lM~~sgi--P~l~---------~~~~i~~l~~rl~l~~s 54 (90)
.+..|.|...|-.++.|++.++- +.+. +-+|+++++..+.++-+
T Consensus 115 LL~FmdN~~~Id~~W~L~V~~sgr~~~~~~v~l~~h~LslkDLqkik~~l~lD~~ 169 (170)
T PF08730_consen 115 LLIFMDNEEHIDESWKLFVTASGRDTQFPNVELKNHVLSLKDLQKIKNSLNLDQD 169 (170)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCCCCcchhhhhceechHHHHHHHHHhCCCCC
Confidence 34568999999999999994332 2222 12578888888777653
No 154
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=20.75 E-value=1.2e+02 Score=17.86 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCchh
Q psy11388 53 LTEEDAIKHFRSKFGEALANSWK 75 (90)
Q Consensus 53 ~sd~eA~~~f~~lI~~s~~~s~~ 75 (90)
-|.++|...|.+++.+-.+..|.
T Consensus 56 ~s~~~A~~~f~k~~~~Kt~~gy~ 78 (84)
T smart00773 56 DSLEDAIKEFEKLFKEKTKNGYE 78 (84)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCc
Confidence 38899999999999887765554
No 155
>PF11311 DUF3114: Protein of unknown function (DUF3114); InterPro: IPR021462 Some members in this family of proteins with unknown function are annotated as cytosolic proteins. This cannot be confirmed.
Probab=20.69 E-value=3e+02 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=21.5
Q ss_pred hHHHHHHHHcc-CCCCHHHHHHHHHHH
Q psy11388 40 KDVNYLRETLV-LDLTEEDAIKHFRSK 65 (90)
Q Consensus 40 ~~i~~l~~rl~-l~~sd~eA~~~f~~l 65 (90)
.-++|+|+.+. .++||.||-..+.+-
T Consensus 97 Qq~qyIR~~y~~~g~tD~qaL~~Yl~~ 123 (249)
T PF11311_consen 97 QQAQYIRNHYKKEGMTDAQALAAYLKD 123 (249)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 45899999997 589999998877663
No 156
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=20.62 E-value=44 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=10.3
Q ss_pred HhhCCCCCCCChh
Q psy11388 28 MISTGLPELSSEK 40 (90)
Q Consensus 28 M~~sgiP~l~~~~ 40 (90)
..+||||.|++..
T Consensus 12 S~~SGIPdfR~~~ 24 (235)
T cd01408 12 STSAGIPDFRSPG 24 (235)
T ss_pred ccccCCCCcCCCC
Confidence 3579999999854
No 157
>PF11515 Cul7: Mouse development and cellular proliferation protein Cullin-7; InterPro: IPR021097 The CPH domain is found in the Cullin-7, PARC and HERC2 proteins, which are all components of known or predicted E3-ubiquitin ligases. The CPH domain is a protein-protein interaction module that binds the teramerisation domain of the tumour suppressor protein p53 []. Structurally it forms a beta-barrel fold similar to the SH3, Tudor and KOW and domains. Unlike the SH3 and Tudor domains, which bind to small peptides, the CPH domain appears to bind to an extended surface on p53.; PDB: 2JUF_A 2JNG_A.
Probab=20.59 E-value=67 Score=19.71 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=12.7
Q ss_pred CCCChhH-HHHHHHHccCCCC
Q psy11388 35 ELSSEKD-VNYLRETLVLDLT 54 (90)
Q Consensus 35 ~l~~~~~-i~~l~~rl~l~~s 54 (90)
+|.+.++ ..|+++.+.++|+
T Consensus 3 dF~s~d~Ya~YVr~~i~~GM~ 23 (78)
T PF11515_consen 3 DFASNDDYAEYVRDNIQPGMR 23 (78)
T ss_dssp GSSSSHHHHHHHHHH--TT-E
T ss_pred cccchhHHHHHHHHhCCCCcE
Confidence 4666554 8899999999875
No 158
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.58 E-value=2e+02 Score=17.97 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=19.8
Q ss_pred HHHHHHHHc---cCCCCHHHHHHHHHHHHHH
Q psy11388 41 DVNYLRETL---VLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 41 ~i~~l~~rl---~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.+++++| .++.||+|.....+.-+.+
T Consensus 73 A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~ 103 (108)
T PF09682_consen 73 AVQYVKERLKKKGIKVTDEQIEGAIEAAVKE 103 (108)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 366777765 5699999977666665554
No 159
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.14 E-value=1e+02 Score=16.31 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHH
Q psy11388 54 TEEDAIKHFRSK 65 (90)
Q Consensus 54 sd~eA~~~f~~l 65 (90)
||++|..+|+.+
T Consensus 2 ~e~~c~~~l~~~ 13 (46)
T PF12760_consen 2 DEEACREYLEEI 13 (46)
T ss_pred CHHHHHHHHHHh
Confidence 577777777653
No 160
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=20.11 E-value=48 Score=22.75 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.7
Q ss_pred HHhchHHHHHHHHHHhhCCCCCCCC
Q psy11388 14 LREHGSLILSLFAMMISTGLPELSS 38 (90)
Q Consensus 14 lR~~~~lil~L~~lM~~sgiP~l~~ 38 (90)
+++.-++++-++.+++.+-+|+|..
T Consensus 2 i~r~l~l~~~~~g~l~~~Q~P~F~~ 26 (167)
T PF11157_consen 2 IRRYLRLAVFAAGALIGSQIPEFAQ 26 (167)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHH
Confidence 4667788899999999999999985
Done!