Query psy11388
Match_columns 90
No_of_seqs 101 out of 523
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:09:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hhm_A Phosphatidylinositol-4, 99.9 7.5E-26 2.6E-30 187.3 4.7 89 2-90 1002-1090(1091)
2 2wxf_A Phosphatidylinositol-4, 99.9 9.3E-24 3.2E-28 173.2 9.4 89 2-90 851-939 (940)
3 2y3a_A Phosphatidylinositol-4, 99.9 1.4E-23 4.6E-28 174.1 9.1 89 2-90 1003-1091(1092)
4 3ls8_A Phosphatidylinositol 3- 99.9 3.1E-23 1E-27 164.3 5.2 81 2-83 532-614 (614)
5 1e7u_A Phosphatidylinositol 3- 99.9 9.3E-22 3.2E-26 161.7 10.4 88 2-89 867-954 (961)
6 2x6h_A GH13170P, VPS34, phosph 99.9 1.5E-21 5.3E-26 156.3 10.0 86 2-88 606-693 (696)
7 1fsh_A Dishevelled-1; three-he 81.9 3.8 0.00013 25.1 5.3 51 20-70 20-85 (105)
8 1v3f_A Pleckstrin 2; three-hel 79.2 4.4 0.00015 25.4 5.0 49 21-70 8-71 (120)
9 1uhw_A Pleckstrin; three-helix 77.4 8 0.00027 24.1 5.8 48 21-69 8-70 (109)
10 1nkz_B Light-harvesting protei 71.5 8.9 0.00031 20.0 4.7 32 52-86 2-33 (41)
11 1lgh_B LH II, B800/850, light 68.8 11 0.00038 20.0 4.6 33 51-86 6-38 (45)
12 2ysr_A DEP domain-containing p 66.0 6.6 0.00023 24.0 3.4 36 35-70 40-81 (105)
13 2cso_A Pleckstrin; DEP domain, 61.7 15 0.00052 23.4 4.6 48 21-69 18-80 (127)
14 2pbi_A Regulator of G-protein 56.5 16 0.00055 27.6 4.6 47 20-68 21-82 (424)
15 2d8d_A Aroag, phospho-2-dehydr 47.9 37 0.0013 19.6 4.5 42 30-71 39-83 (90)
16 3m00_A Aristolochene synthase; 44.9 22 0.00074 27.9 3.8 24 44-70 467-490 (550)
17 3unf_N Proteasome subunit beta 44.8 33 0.0011 22.3 4.3 30 42-71 135-164 (199)
18 3n0f_A Isoprene synthase; terp 44.2 22 0.00077 27.8 3.8 24 44-70 470-493 (555)
19 3rmi_A Chorismate mutase prote 44.0 47 0.0016 20.3 4.7 42 30-71 48-93 (114)
20 1ryp_H 20S proteasome; multica 43.9 37 0.0013 22.2 4.5 30 42-71 144-173 (205)
21 1iru_J 20S proteasome; cell cy 43.7 41 0.0014 21.9 4.6 30 42-71 147-176 (205)
22 1iru_H 20S proteasome; cell cy 42.6 37 0.0013 22.2 4.3 30 42-71 136-165 (205)
23 1n1b_A (+)-bornyl diphosphate 42.5 25 0.00087 27.3 3.9 26 43-71 467-492 (549)
24 1iru_K 20S proteasome; cell cy 42.4 40 0.0014 21.9 4.5 30 42-71 140-169 (201)
25 1ryp_J 20S proteasome; multica 42.3 42 0.0014 21.8 4.6 30 42-71 146-175 (204)
26 3g4d_A (+)-delta-cadinene synt 42.1 25 0.00086 27.5 3.8 26 42-70 469-495 (554)
27 1j2q_H Proteasome beta subunit 41.8 41 0.0014 21.9 4.4 30 42-71 137-166 (202)
28 1ryp_L 20S proteasome; multica 40.8 40 0.0014 22.1 4.3 30 42-71 137-166 (212)
29 1ryp_I 20S proteasome; multica 39.7 43 0.0015 22.3 4.3 30 42-71 135-164 (222)
30 1dx7_A Light-harvesting protei 39.2 14 0.00046 19.9 1.3 32 52-86 10-41 (48)
31 3nzj_H Proteasome component PU 39.2 43 0.0015 23.3 4.3 30 42-71 164-193 (261)
32 1ryp_K 20S proteasome; multica 39.0 46 0.0016 21.5 4.3 30 42-71 141-170 (198)
33 1iru_L 20S proteasome; cell cy 38.8 39 0.0013 22.0 3.9 30 42-71 136-165 (204)
34 1yar_H Proteasome beta subunit 37.4 49 0.0017 21.9 4.3 30 42-71 143-172 (217)
35 1wrg_A LH-1, light-harvesting 36.5 29 0.001 19.0 2.5 32 52-86 10-41 (55)
36 3kfu_G Glutamyl-tRNA(Gln) amid 36.2 64 0.0022 18.9 4.3 23 39-61 8-30 (92)
37 2ong_A 4S-limonene synthase; m 35.9 34 0.0012 26.5 3.7 25 44-71 461-485 (543)
38 3h0l_C Glutamyl-tRNA(Gln) amid 35.7 66 0.0023 18.9 4.3 23 39-61 4-26 (94)
39 3mi0_A Proteasome subunit alph 34.5 43 0.0015 23.1 3.7 29 42-70 164-192 (248)
40 3ml6_A Chimeric complex betwee 34.4 49 0.0017 24.4 4.2 49 21-69 9-72 (385)
41 3unf_H Proteasome subunit beta 34.1 64 0.0022 21.9 4.5 29 42-70 135-163 (234)
42 1rbl_M Ribulose 1,5 bisphospha 33.8 39 0.0013 20.9 3.1 21 48-68 15-35 (109)
43 1q5q_H Proteasome beta-type su 33.7 59 0.002 21.8 4.3 30 42-71 147-176 (235)
44 1ps1_A Pentalenene synthase; a 33.6 47 0.0016 23.1 3.9 20 52-71 245-264 (337)
45 1iru_N 20S proteasome; cell cy 33.5 63 0.0021 21.3 4.3 30 42-71 147-178 (219)
46 1ryp_C 20S proteasome; multica 33.4 60 0.002 21.8 4.3 30 42-71 172-201 (244)
47 1yar_A Proteasome alpha subuni 32.2 53 0.0018 21.9 3.8 30 42-71 173-202 (233)
48 1wdd_S Ribulose bisphosphate c 32.1 33 0.0011 22.0 2.6 21 48-68 16-36 (128)
49 1iru_E 20S proteasome; cell cy 31.9 61 0.0021 21.8 4.1 30 42-71 178-207 (241)
50 1iru_A 20S proteasome; cell cy 31.8 67 0.0023 21.6 4.3 30 42-71 176-207 (246)
51 1ryp_E 20S proteasome; multica 31.7 62 0.0021 21.7 4.1 30 42-71 172-201 (242)
52 1j2p_A Alpha-ring, proteasome 31.6 70 0.0024 21.6 4.4 30 42-71 172-201 (246)
53 3m8j_A FOCB protein; all-alpha 31.5 72 0.0025 19.9 4.0 33 25-60 35-68 (111)
54 1ryp_B 20S proteasome; multica 31.1 63 0.0022 21.8 4.1 30 42-71 172-201 (250)
55 3h4p_a Proteasome subunit beta 30.8 60 0.002 21.6 3.9 30 42-71 139-168 (219)
56 1ecm_A Endo-oxabicyclic transi 30.8 78 0.0027 18.8 4.1 42 30-71 41-86 (109)
57 3ip4_C Aspartyl/glutamyl-tRNA( 30.6 88 0.003 18.6 4.3 23 39-61 6-28 (100)
58 1iru_M 20S proteasome; cell cy 30.2 83 0.0028 20.5 4.5 30 42-71 146-184 (213)
59 3b09_A Peptidyl-prolyl CIS-tra 30.2 85 0.0029 18.3 5.5 38 28-65 44-84 (88)
60 1iru_I 20S proteasome; cell cy 29.2 58 0.002 21.9 3.6 30 42-71 135-164 (234)
61 1hbk_A ACBP, acyl-COA binding 28.5 55 0.0019 19.1 3.0 23 51-74 65-87 (89)
62 3zxw_B Ribulose bisphosphate c 28.2 50 0.0017 20.8 2.9 21 48-68 14-34 (118)
63 3ret_A Salicylate biosynthesis 28.1 90 0.0031 18.3 4.0 40 32-71 45-88 (101)
64 1svd_M Ribulose bisphosphate c 28.1 43 0.0015 20.8 2.5 21 48-68 17-37 (110)
65 1iru_B 20S proteasome; cell cy 27.9 54 0.0019 21.9 3.3 30 42-71 170-199 (233)
66 2vgq_A Maltose-binding peripla 27.6 38 0.0013 24.8 2.6 55 28-87 411-465 (477)
67 3kb9_A EPI-isozizaene synthase 27.4 57 0.0019 23.6 3.5 21 51-71 286-306 (382)
68 3bqa_A Sensor protein PHOQ; hi 27.1 44 0.0015 21.9 2.5 18 8-25 4-21 (148)
69 1ryp_D 20S proteasome; multica 26.8 74 0.0025 21.3 3.8 30 42-71 170-202 (241)
70 1st7_A ACBP, acyl-COA-binding 26.6 30 0.001 20.2 1.5 22 50-71 61-82 (86)
71 2lbb_A Acyl COA binding protei 26.3 66 0.0023 19.3 3.1 23 51-74 72-94 (96)
72 1bxn_I Rubisco, protein (ribul 26.3 60 0.0021 21.0 3.1 21 48-68 9-29 (139)
73 2vgl_S AP-2 complex subunit si 26.2 66 0.0022 20.0 3.2 28 13-40 102-129 (142)
74 3bny_A Aristolochene synthase; 25.9 77 0.0026 21.8 3.8 20 52-71 253-272 (320)
75 1yvw_A PRA-PH, phosphoribosyl- 25.8 67 0.0023 20.0 3.2 42 13-59 59-101 (115)
76 1ufm_A COP9 complex subunit 4; 25.5 50 0.0017 19.1 2.4 25 42-68 33-57 (84)
77 2kso_A Ephrin type-A receptor 25.3 29 0.00098 20.0 1.3 22 30-51 7-28 (82)
78 1di1_A Aristolochene synthase; 25.0 1.6E+02 0.0055 19.8 7.2 20 52-71 239-258 (300)
79 2fp1_A Chorismate mutase; alph 24.6 1.3E+02 0.0043 19.6 4.5 42 30-71 29-74 (166)
80 1q5r_H Proteasome beta-type su 24.5 1E+02 0.0034 21.8 4.3 30 42-71 212-241 (294)
81 4f0h_B Ribulose bisphosphate c 23.7 56 0.0019 21.1 2.5 20 49-68 10-29 (138)
82 1ryp_N 20S proteasome; multica 23.6 68 0.0023 21.4 3.1 30 42-71 152-186 (233)
83 1bwv_S Rubisco, protein (ribul 23.5 57 0.0019 21.1 2.5 21 48-68 9-29 (138)
84 1gk8_I Ribulose bisphosphate c 23.3 58 0.002 21.1 2.6 21 48-68 16-36 (140)
85 1ryp_A 20S proteasome; multica 23.1 72 0.0025 21.4 3.2 30 42-71 170-206 (243)
86 2gbb_A Putative chorismate mut 23.0 1E+02 0.0036 19.8 3.8 42 30-71 26-71 (156)
87 1uzc_A Hypothetical protein FL 23.0 66 0.0023 18.2 2.5 19 53-71 12-30 (71)
88 3v1v_A 2-MIB synthase, 2-methy 22.8 88 0.003 23.4 3.8 25 44-71 360-384 (433)
89 1ryp_G 20S proteasome; multica 22.8 1.3E+02 0.0045 20.2 4.5 29 43-71 170-201 (244)
90 3nzj_K Proteasome component PR 22.8 88 0.003 22.0 3.7 30 42-71 212-241 (287)
91 2dod_A Transcription elongatio 22.6 87 0.003 18.2 3.1 21 50-70 11-31 (82)
92 1s5p_A NAD-dependent deacetyla 22.5 36 0.0012 23.2 1.5 13 27-39 12-24 (235)
93 2cb8_A Acyl-COA-binding protei 21.4 76 0.0026 18.5 2.7 21 51-71 63-83 (87)
94 1s28_A ORF1; type III chaperon 21.1 95 0.0033 19.9 3.2 27 45-71 97-124 (132)
95 2gtv_X CM, chorismate mutase; 21.0 95 0.0032 18.8 3.1 42 30-71 47-92 (104)
96 1yo3_A Dynein light chain 1; s 20.7 56 0.0019 19.7 2.0 45 30-74 23-67 (102)
97 2eoc_A Poly [ADP-ribose] polym 20.6 84 0.0029 19.4 2.9 25 53-77 83-107 (124)
98 2j5c_A 1,8-cineole synthase; t 20.2 38 0.0013 26.4 1.4 20 52-71 493-512 (569)
No 1
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=99.92 E-value=7.5e-26 Score=187.31 Aligned_cols=89 Identities=35% Similarity=0.750 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWA 81 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~ 81 (90)
.|+++|+.||++||+|+++|++||++|+++||||+++.+++.+|++||+|++||+||+++|.++|++|++++|+|++||+
T Consensus 1002 ~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~~~i~~lr~rf~l~lseeeA~~~f~~~i~~s~~~~~~t~~n~~ 1081 (1091)
T 3hhm_A 1002 RFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQEALEYFMKQMNDARHGGWTTKMDWI 1081 (1091)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHCCCCCCCSSSCSS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeehhHH
Confidence 69999999999999999999999999999999999998899999999999999999999999999999977899999999
Q ss_pred HHHhhhcCC
Q psy11388 82 SHNLAKNNK 90 (90)
Q Consensus 82 iH~~a~~~~ 90 (90)
+|++||.|.
T Consensus 1082 ~H~~a~~~~ 1090 (1091)
T 3hhm_A 1082 FHTIKQHAL 1090 (1091)
T ss_dssp SCCC-----
T ss_pred HHHhhcccC
Confidence 999999874
No 2
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=99.90 E-value=9.3e-24 Score=173.25 Aligned_cols=89 Identities=57% Similarity=1.016 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWA 81 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~ 81 (90)
.|+.+|+.||.+||+|++.|++++++|+++|+||+++.+++.++++||+|++||+||+++|.++|++|+.++|+|++||+
T Consensus 851 ~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~~~~i~~l~~r~~l~~se~ea~~~~~~~i~~s~~~~~~t~~n~~ 930 (940)
T 2wxf_A 851 RFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWL 930 (940)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCSHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCcccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeehhHH
Confidence 59999999999999999999999999999999999998899999999999999999999999999999966899999999
Q ss_pred HHHhhhcCC
Q psy11388 82 SHNLAKNNK 90 (90)
Q Consensus 82 iH~~a~~~~ 90 (90)
||++||.|+
T Consensus 931 ~H~~~~~~~ 939 (940)
T 2wxf_A 931 AHNVSKDNR 939 (940)
T ss_dssp ---------
T ss_pred HHHhccccC
Confidence 999999985
No 3
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=99.89 E-value=1.4e-23 Score=174.13 Aligned_cols=89 Identities=48% Similarity=0.949 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWA 81 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~ 81 (90)
.|+.+|+.||.+||+|++.|++++++|+++|+||+++.+++.++++||+|++||+||+++|.++|++|+.++|+|++||+
T Consensus 1003 ~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~~~~i~~lr~rf~l~~seeeA~~~~~~~I~~s~~~~~~t~~n~~ 1082 (1092)
T 2y3a_A 1003 RFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTKVNWM 1082 (1092)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSSHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCccccchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhcCceeehhHH
Confidence 59999999999999999999999999999999999998899999999999999999999999999999976899999999
Q ss_pred HHHhhhcCC
Q psy11388 82 SHNLAKNNK 90 (90)
Q Consensus 82 iH~~a~~~~ 90 (90)
||++||.|+
T Consensus 1083 ~H~~~~~~~ 1091 (1092)
T 2y3a_A 1083 AHTVRKDYR 1091 (1092)
T ss_dssp SCC------
T ss_pred HHHhcccCC
Confidence 999999985
No 4
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=99.87 E-value=3.1e-23 Score=164.27 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChh--HHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEK--DVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLN 79 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~--~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~ 79 (90)
.|+.+|+.||++||+|+++|++||++|+++||||++..+ ++.++++||+|++||+||..||.++|++|++ +++|+++
T Consensus 532 ~Fr~~c~~~~~~LR~~~~~il~l~~lM~~s~lp~~~~~~~~~i~~l~~rf~l~lse~ea~~~~~~lI~~S~~-s~~~~~~ 610 (614)
T 3ls8_A 532 EFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVH-ALFAAVV 610 (614)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTTTSCCHHHHTSGGGHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHH-HHC----
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHhcCCCCccccChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 699999999999999999999999999999999998654 5999999999999999999999999999998 8999999
Q ss_pred HHHH
Q psy11388 80 WASH 83 (90)
Q Consensus 80 d~iH 83 (90)
|.||
T Consensus 611 d~~h 614 (614)
T 3ls8_A 611 EQIH 614 (614)
T ss_dssp ----
T ss_pred HhhC
Confidence 9999
No 5
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=99.86 E-value=9.3e-22 Score=161.74 Aligned_cols=88 Identities=34% Similarity=0.674 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWA 81 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~ 81 (90)
.|+.+|+.||.+||+|++.|++++++|+++|+||+++.+++.++++||+|++||+||+++|.++|++|++++|+|++||+
T Consensus 867 ~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~~~~i~~lr~rf~l~~se~eA~~~~~~lI~~s~~~~~t~~~n~~ 946 (961)
T 1e7u_A 867 KFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQFNWF 946 (961)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeEEehhH
Confidence 59999999999999999999999999999999999998899999999999999999999999999999987799999999
Q ss_pred HHHhhhcC
Q psy11388 82 SHNLAKNN 89 (90)
Q Consensus 82 iH~~a~~~ 89 (90)
+|++++-+
T Consensus 947 ~h~~~gi~ 954 (961)
T 1e7u_A 947 LHLVLGIK 954 (961)
T ss_dssp HHHTTCC-
T ss_pred HHHHHhhc
Confidence 99998743
No 6
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=99.85 E-value=1.5e-21 Score=156.28 Aligned_cols=86 Identities=29% Similarity=0.537 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHhhCCCCCCCChh--HHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy11388 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEK--DVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLN 79 (90)
Q Consensus 2 ~F~~lc~~ay~~lR~~~~lil~L~~lM~~sgiP~l~~~~--~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~ 79 (90)
.|+..|+.+|.+||+|++.|++++++|+++|+||++..+ .+.++++||++++||+||..+|.++|++|++ +|+|++|
T Consensus 606 ~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~~~i~~l~~rf~l~lseeea~~~~~~lI~~S~~-s~~t~~~ 684 (696)
T 2x6h_A 606 EFRKQCYTAYLHLRRHANVMLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQHLQSLLDVSIT-AVMPALV 684 (696)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGGGHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-HHCHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence 599999999999999999999999999999999999754 4899999999999999999999999999998 7999999
Q ss_pred HHHHHhhhc
Q psy11388 80 WASHNLAKN 88 (90)
Q Consensus 80 d~iH~~a~~ 88 (90)
|.+|.+||.
T Consensus 685 d~~h~~aq~ 693 (696)
T 2x6h_A 685 EQIHRFTQY 693 (696)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
No 7
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=81.92 E-value=3.8 Score=25.12 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHHh--hCCCC-------------CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 20 LILSLFAMMI--STGLP-------------ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 20 lil~L~~lM~--~sgiP-------------~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
.+-.++..|. ++|+| ||.+.+-|+||.+++.--.|.+||..+-..+++.-+
T Consensus 20 ~l~~iv~~M~~p~~Gv~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 20 DMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp CHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHhCCCCCceeEEeEeCCEECCceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 3457888888 57887 233334589999998422799999999999887643
No 8
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=79.21 E-value=4.4 Score=25.44 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHh--hCCCC-------------CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 21 ILSLFAMMI--STGLP-------------ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 21 il~L~~lM~--~sgiP-------------~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
+-.|+..|. .+||| ||.+.+-|+||.+... -.|.+||...-+.|++.-+
T Consensus 8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~-~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNF-AASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTS-CSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCC
Confidence 456778887 46998 6666677999999753 5688999999888887643
No 9
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=77.39 E-value=8 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHh--hCCCC-------------CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 21 ILSLFAMMI--STGLP-------------ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 21 il~L~~lM~--~sgiP-------------~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
+-.|+.-|. ++||| ||.+.+-|+||-+.+. --|.+||..+-..|++.-
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~-~~~R~EAv~lgq~Ll~~G 70 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKL-VRNRQEGLMISASLLSEG 70 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCC-CCCHHHHHHHHHHHHHCC
Confidence 446788888 48998 5555566999999873 337899999988888764
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=71.45 E-value=8.9 Score=19.96 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q psy11388 52 DLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLA 86 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a 86 (90)
++||+||++ |.+...++.. .++.+--.-|.++
T Consensus 2 gLT~~EA~E-fH~~~~~~~~--~F~~iA~vAH~l~ 33 (41)
T 1nkz_B 2 TLTAEQSEE-LHKYVIDGTR--VFLGLALVAHFLA 33 (41)
T ss_dssp CCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHH
Confidence 689999994 5555555564 2566655556554
No 11
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=68.83 E-value=11 Score=19.99 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q psy11388 51 LDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLA 86 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a 86 (90)
-++||+||++ |.+...++.. .++.+--.-|.++
T Consensus 6 tGLT~~EA~E-fH~~~~~~~~--~F~~iA~vAH~L~ 38 (45)
T 1lgh_B 6 SGLTEEEAIA-VHDQFKTTFS--AFIILAAVAHVLV 38 (45)
T ss_dssp SSCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3799999994 5555555554 2566655566554
No 12
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.99 E-value=6.6 Score=24.00 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCChhHHHHHHHH------ccCCCCHHHHHHHHHHHHHHHh
Q psy11388 35 ELSSEKDVNYLRET------LVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 35 ~l~~~~~i~~l~~r------l~l~~sd~eA~~~f~~lI~~s~ 70 (90)
||.+.+.|++|.+. |....|-+||...-+.+++.-+
T Consensus 40 CF~GsE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~gv 81 (105)
T 2ysr_A 40 CFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHV 81 (105)
T ss_dssp CEEHHHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHTTS
T ss_pred cccchHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHCCC
Confidence 56666779999887 4678999999999999988643
No 13
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=61.71 E-value=15 Score=23.37 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=35.9
Q ss_pred HHHHHHHHhh--CCCCC-------------CCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 21 ILSLFAMMIS--TGLPE-------------LSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 21 il~L~~lM~~--sgiP~-------------l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
+=.|+.-|.+ +|||- |.+.+-|+||-+.+ .-.|.+||..+-..|++.-
T Consensus 18 l~~Lv~~Mqd~~~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~-~~~sR~EAv~lg~~Ll~~G 80 (127)
T 2cso_A 18 LGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQ-SVRNRQEGLMIASSLLNEG 80 (127)
T ss_dssp HHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTT-SCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCceeeeEEeccEEecceeechHHHHHHHHcC-CCCCHHHHHHHHHHHHHCC
Confidence 4568888884 79983 33445589999977 3458899998888888764
No 14
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=56.51 E-value=16 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=33.6
Q ss_pred HHHHHHHHHh--hCCCCCCC-------------ChhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 20 LILSLFAMMI--STGLPELS-------------SEKDVNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 20 lil~L~~lM~--~sgiP~l~-------------~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+=.|+..|. ++|+|--. |.+-|+||.+++. .+++||.+.=..+++.
T Consensus 21 ~~e~lv~~M~~~~~Gv~i~~~~~~~~~~p~~F~Gsd~V~WL~~~~~--~~~~EA~~lg~~L~~~ 82 (424)
T 2pbi_A 21 KIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTGGDVLQWITQRLW--ISNLEAQNLGNFIVKY 82 (424)
T ss_dssp HHHHHHHHHTCTTTSCCCCCCSSCCCSSCCCEEHHHHHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhCCCCCCCccceeecceeCCCccccHHHHHHHHHcCC--CChHHHHHHHHHHHHC
Confidence 3456788887 57987433 3344899999995 5889999776666654
No 15
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=47.92 E-value=37 Score=19.59 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=32.4
Q ss_pred hCCCCCCCChh---HHHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -+..+.+.-..+++++.+...|..+|..|..
T Consensus 39 ~~~~~i~dp~RE~~vl~~~~~~~~~~l~~~~i~~if~~ii~~s~~ 83 (90)
T 2d8d_A 39 ELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEIFKASLD 83 (90)
T ss_dssp HHTCCSCCHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTC-
T ss_pred HCCCCCcCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 36888776532 3677777767789999999999999998764
No 16
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=44.89 E-value=22 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 44 YLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 44 ~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
|+++. +.|+|||..++.++|.++-
T Consensus 467 YMke~---GvSeEeA~~~i~~~Ie~~w 490 (550)
T 3m00_A 467 CMRDY---GISTKEAMAKFQNMAETAW 490 (550)
T ss_dssp HHHHH---TCCHHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 77777 8999999999999999763
No 17
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=44.81 E-value=33 Score=22.26 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 135 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 164 (199)
T 3unf_N 135 YGYVDAAYKPGMTPEECRRFTTNAITLAMN 164 (199)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988888877664
No 18
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=44.16 E-value=22 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 44 YLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 44 ~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
|+++. +.|+|||..++.++|.++-
T Consensus 470 YMke~---GvSeEeA~~~i~~~Ie~~w 493 (555)
T 3n0f_A 470 YMRTK---GISEELATESVMNLIDETW 493 (555)
T ss_dssp HHHHH---TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHc---CCCHHHHHHHHHHHHHHHH
Confidence 77776 8999999999999998763
No 19
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=43.98 E-value=47 Score=20.34 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=33.6
Q ss_pred hCCCCCCCChh---HHHHHHHHc-cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETL-VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl-~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -+..+.+.- ..+++++.++..|..+|..|..
T Consensus 48 ~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~S~~ 93 (114)
T 3rmi_A 48 RYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIKEVVH 93 (114)
T ss_dssp HTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 47898777542 366777765 7899999999999999999885
No 20
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=43.94 E-value=37 Score=22.20 Aligned_cols=30 Identities=10% Similarity=0.388 Sum_probs=25.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 144 ~~~Le~~~~~~~s~eea~~l~~~al~~a~~ 173 (205)
T 1ryp_H 144 YGYCDKNFRENMSKEETVDFIKHSLSQAIK 173 (205)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 568888999999999999988888877654
No 21
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=43.73 E-value=41 Score=21.93 Aligned_cols=30 Identities=3% Similarity=0.035 Sum_probs=25.8
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 147 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 176 (205)
T 1iru_J 147 YGMCESLWEPNMDPDHLFETISQAMLNAVD 176 (205)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999998888887765
No 22
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=42.56 E-value=37 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 136 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 165 (205)
T 1iru_H 136 YGYVDATYREGMTKEECLQFTANALALAME 165 (205)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 568888999999999999998888877654
No 23
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=42.48 E-value=25 Score=27.27 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=22.0
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 43 NYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 43 ~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
-|+++. +.|+|||..++.++|.++..
T Consensus 467 cyMke~---g~s~eeA~~~i~~~i~~~wk 492 (549)
T 1n1b_A 467 CYMKET---NASEEEAVEHVKFLIREAWK 492 (549)
T ss_dssp HHHHHH---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHHHHHH
Confidence 367777 78999999999999998754
No 24
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=42.38 E-value=40 Score=21.88 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 140 ~~~Le~~~~~~~s~eea~~l~~~al~~a~~ 169 (201)
T 1iru_K 140 LSILDRYYTPTISRERAVELLRKCLEELQK 169 (201)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988888877654
No 25
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=42.34 E-value=42 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=25.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 146 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 175 (204)
T 1ryp_J 146 FGMCESLYEPNLEPEDLFETISQALLNAAD 175 (204)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhcCCCcCHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999888887765
No 26
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=42.11 E-value=25 Score=27.49 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=22.0
Q ss_pred HH-HHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 42 VN-YLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 42 i~-~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
|. |+++. +.|+|||..++.++|.++-
T Consensus 469 V~cYMke~---GvSeEeA~~~i~~~Ie~~w 495 (554)
T 3g4d_A 469 IECYMEEY---GVTAQEAYDVFNKHVESAW 495 (554)
T ss_dssp HHHHHHHH---TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 44 77777 8999999999999998763
No 27
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=41.80 E-value=41 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 137 ~~~Le~~~~~~~s~eea~~la~~al~~~~~ 166 (202)
T 1j2q_H 137 YGVLEDRFTPEIGVDEAVELAVRAIYSAMK 166 (202)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999888887754
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=40.77 E-value=40 Score=22.12 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 137 ~~~Le~~~~~~~s~eea~~la~~al~~~~~ 166 (212)
T 1ryp_L 137 YGVLDSNYKWDLSVEDALYLGKRSILAAAH 166 (212)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988888876654
No 29
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=39.72 E-value=43 Score=22.30 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..++.
T Consensus 135 ~~~Le~~~~~~ms~eeA~~la~~al~~~~~ 164 (222)
T 1ryp_I 135 MAVLESHWKQDLTKEEAIKLASDAIQAGIW 164 (222)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988888877653
No 30
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=39.24 E-value=14 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q psy11388 52 DLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLA 86 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a 86 (90)
++||+||.+ |.+...+++. .++.+-=.-|.++
T Consensus 10 GLT~~EA~E-fH~~~~~~~~--~F~~iA~vAH~l~ 41 (48)
T 1dx7_A 10 GLTDEQAQE-LHSVYMSGLW--LFSAVAIVAHLAV 41 (48)
T ss_dssp HHHHHHHHH-HTHHHHHHHH--HHTTHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHH
Confidence 688999984 5555555554 2455555556554
No 31
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=39.17 E-value=43 Score=23.26 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=25.4
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-|..++.
T Consensus 164 ~~~Le~~~~~~ms~eEA~~la~~al~~a~~ 193 (261)
T 3nzj_H 164 MAVLESHWKQDLTKEEAIKLASDAIQAGIW 193 (261)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 467888999999999999998888877653
No 32
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=39.03 E-value=46 Score=21.52 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 141 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 170 (198)
T 1ryp_K 141 FSLLDHHYRPDMTTEEGLDLLKLCVQELEK 170 (198)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999987777766553
No 33
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=38.84 E-value=39 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=24.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..+|...+..++|.+||.+...+-+..+..
T Consensus 136 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 165 (204)
T 1iru_L 136 YGVMDRGYSYDLEVEQAYDLARRAIYQATY 165 (204)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467788899999999999988888876653
No 34
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=37.40 E-value=49 Score=21.93 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 143 ~~~Le~~~~~~~s~eea~~la~~al~~~~~ 172 (217)
T 1yar_H 143 YGVLESQYSEKMTVDEGVDLVIRAISAAKQ 172 (217)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHHHHHh
Confidence 567888999999999999988887776643
No 35
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=36.54 E-value=29 Score=19.03 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q psy11388 52 DLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLA 86 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a 86 (90)
++||+||+ .|.++.-.++. .+..+-=.-|.++
T Consensus 10 GLT~~EAq-EfH~~f~~~~~--~F~~iAvvAH~L~ 41 (55)
T 1wrg_A 10 GITEGEAK-EFHKIFTSSIL--VFFGVAAFAHLLV 41 (55)
T ss_dssp HHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 57899998 45566655664 3566655556554
No 36
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=36.23 E-value=64 Score=18.92 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.4
Q ss_pred hhHHHHHHHHccCCCCHHHHHHH
Q psy11388 39 EKDVNYLRETLVLDLTEEDAIKH 61 (90)
Q Consensus 39 ~~~i~~l~~rl~l~~sd~eA~~~ 61 (90)
.+++.++-.=-+|++||+|...+
T Consensus 8 ~e~V~~iA~LArL~l~eeE~~~~ 30 (92)
T 3kfu_G 8 PELLRKLETLAKIRLSPEEEALL 30 (92)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH
Confidence 46899998888999999998744
No 37
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=35.93 E-value=34 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=20.2
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 44 YLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 44 ~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
|+++. +.|++||..++.++|+++..
T Consensus 461 yMke~---g~s~eeA~~~i~~~ie~~wk 485 (543)
T 2ong_A 461 YMSDY---NASEAEARKHVKWLIAEVWK 485 (543)
T ss_dssp HHHHT---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHc---CCCHHHHHHHHHHHHHHHHH
Confidence 44444 78999999999999998754
No 38
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=35.69 E-value=66 Score=18.88 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=18.8
Q ss_pred hhHHHHHHHHccCCCCHHHHHHH
Q psy11388 39 EKDVNYLRETLVLDLTEEDAIKH 61 (90)
Q Consensus 39 ~~~i~~l~~rl~l~~sd~eA~~~ 61 (90)
.+++.++-.=-+|++||+|...+
T Consensus 4 ~e~v~~iA~LArL~l~eee~~~~ 26 (94)
T 3h0l_C 4 REWVLKIAKLARLELKEEEIEVF 26 (94)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Confidence 36788888888999999998743
No 39
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=34.50 E-value=43 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.2
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
..+|.+.+..++|.+||.+...+-+.++.
T Consensus 164 ~~~Le~~y~~~mt~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 164 ANALKESYAENASLTDALRIAVAALRAGS 192 (248)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999888876
No 40
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=34.45 E-value=49 Score=24.42 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHHHHHHHh--hCCCC-------------CCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q psy11388 21 ILSLFAMMI--STGLP-------------ELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEA 69 (90)
Q Consensus 21 il~L~~lM~--~sgiP-------------~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s 69 (90)
+-.|+..|. ++|++ ||.+.+-|+||-+.+..=.|.+||..+-..|++.-
T Consensus 9 l~~i~~~M~~~~~Gl~i~dr~~~~~~~~~~F~G~elVdWL~~~~~~~~~R~eA~~~g~~Ll~~G 72 (385)
T 3ml6_A 9 MASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAG 72 (385)
T ss_dssp HHHHHHHHHSTTSSSCCEEECCSSCCEEEEEEHHHHHHHHHHTCCSCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhCCCCCceeEeeEECcEECCCeEEhHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC
Confidence 446788888 46884 23333458999999864478899999998888764
No 41
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=34.07 E-value=64 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHh
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~ 70 (90)
...|...+..++|.+||.+...+-+..+.
T Consensus 135 ~~~Le~~~~~~ms~eeA~~la~~al~~~~ 163 (234)
T 3unf_H 135 VALLEDRFQPNMTLEAAQELLVEAITAGI 163 (234)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 46788899999999999998887777665
No 42
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=33.80 E-value=39 Score=20.94 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=18.0
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-++.++-+|++
T Consensus 15 SyLP~lt~eqI~kQI~Yll~q 35 (109)
T 1rbl_M 15 SYLPPLSDRQIAAQIEYMIEQ 35 (109)
T ss_dssp TTSSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 357899999999999988886
No 43
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=33.66 E-value=59 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 147 ~~~Le~~~~~~ms~eeA~~la~~al~~a~~ 176 (235)
T 1q5q_H 147 KSALKKIYSPDSDEETALRAAIESLYDAAD 176 (235)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988888876654
No 44
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=33.55 E-value=47 Score=23.13 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q psy11388 52 DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~ 71 (90)
+.|++||..++.++|+++..
T Consensus 245 g~s~eeA~~~v~~~i~~~~~ 264 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLE 264 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999988765
No 45
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=33.54 E-value=63 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=24.8
Q ss_pred HHHHHHHccC--CCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVL--DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l--~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+.. ++|.+||.+...+-+..+..
T Consensus 147 ~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~ 178 (219)
T 1iru_N 147 QPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178 (219)
T ss_dssp HHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678888899 99999999988887776654
No 46
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=33.39 E-value=60 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 172 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (244)
T 1ryp_C 172 QTLLQMDYKDDMKVDDAIELALKTLSKTTD 201 (244)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHhc
Confidence 567888999999999999999888887765
No 47
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=32.21 E-value=53 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.3
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 173 ~~~Le~~~~~~~s~eea~~la~~al~~~~~ 202 (233)
T 1yar_A 173 VSFLEREYKENLPEKEAVTLGIKALKSSLE 202 (233)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 467888899999999999988888887664
No 48
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=32.11 E-value=33 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.7
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-++.++.+|.+
T Consensus 16 SyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 16 SYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTSSCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 357899999999888888875
No 49
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=31.89 E-value=61 Score=21.77 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 178 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 207 (241)
T 1iru_E 178 QSSLQELYHKSMTLKEAIKSSLIILKQVME 207 (241)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 467888899999999999998888887765
No 50
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=31.80 E-value=67 Score=21.63 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.4
Q ss_pred HHHHHHHccC--CCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVL--DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l--~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+.. ++|.+||.+...+-+..+..
T Consensus 176 ~~~Le~~~~~~~~ms~eea~~la~~al~~~~~ 207 (246)
T 1iru_A 176 TSFLEKKVKKKFDWTFEQTVETAITCLSTVLS 207 (246)
T ss_dssp HHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccCCCCHHHHHHHHHHHHHHHhc
Confidence 4578888899 99999999998888887764
No 51
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=31.66 E-value=62 Score=21.71 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=25.7
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 172 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (242)
T 1ryp_E 172 QAELLNEWHSSLTLKEAELLVLKILKQVME 201 (242)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Confidence 467888899999999999998888887765
No 52
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=31.62 E-value=70 Score=21.57 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 172 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (246)
T 1j2p_A 172 TEFFEKEYRDDLSFDDAMVLGLVAMGLSIE 201 (246)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 567888899999999999998888887765
No 53
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=31.46 E-value=72 Score=19.87 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=25.1
Q ss_pred HHHHh-hCCCCCCCChhHHHHHHHHccCCCCHHHHHH
Q psy11388 25 FAMMI-STGLPELSSEKDVNYLRETLVLDLTEEDAIK 60 (90)
Q Consensus 25 ~~lM~-~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~ 60 (90)
|.+++ -|+ +++++.|..|++-|..+.|..||.+
T Consensus 35 F~LLlelS~---IrSekII~ALrdyLV~G~srkeaCe 68 (111)
T 3m8j_A 35 FFLLIGISS---IHSDRVILAMKDYLVSGHSRKDVCE 68 (111)
T ss_dssp HHHHHHHSC---CCCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHCC---CCCHHHHHHHHHHHHcCCcHHHHHH
Confidence 44444 344 4666679999999999999999984
No 54
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=31.08 E-value=63 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.6
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 172 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (250)
T 1ryp_B 172 KTFLEKRWNDELELEDAIHIALLTLKESVE 201 (250)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 467888899999999999998888887764
No 55
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=30.80 E-value=60 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=25.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 139 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 168 (219)
T 3h4p_a 139 YGVLEAGYDRDMSVEEGIKLALNALKSAME 168 (219)
T ss_dssp HHHHHTSCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 457888899999999999999998888775
No 56
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=30.77 E-value=78 Score=18.79 Aligned_cols=42 Identities=10% Similarity=0.039 Sum_probs=31.4
Q ss_pred hCCCCCCCChh---HHHHHHHHc-cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETL-VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl-~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -+..+.+.. ..+++++.++..|..+|..|..
T Consensus 41 ~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~~ 86 (109)
T 1ecm_A 41 LSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVL 86 (109)
T ss_dssp HTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHHHHH
Confidence 37888666532 256666653 4599999999999999998875
No 57
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=30.55 E-value=88 Score=18.57 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=19.2
Q ss_pred hhHHHHHHHHccCCCCHHHHHHH
Q psy11388 39 EKDVNYLRETLVLDLTEEDAIKH 61 (90)
Q Consensus 39 ~~~i~~l~~rl~l~~sd~eA~~~ 61 (90)
.++|.++-.=-+|++||+|...+
T Consensus 6 ~e~v~~iA~LArL~l~eeE~~~~ 28 (100)
T 3ip4_C 6 REEVEHIANLARLQISPEETEEM 28 (100)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Confidence 46889998888999999998743
No 58
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=30.25 E-value=83 Score=20.52 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHH---------ccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRET---------LVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~r---------l~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|... +..++|.+||.+...+-+..+..
T Consensus 146 ~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~ 184 (213)
T 1iru_M 146 QPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184 (213)
T ss_dssp HHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556666 67899999999988887777654
No 59
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=30.20 E-value=85 Score=18.32 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=26.6
Q ss_pred HhhCCCCCCCChhHHHHHHHHcc---CCCCHHHHHHHHHHH
Q psy11388 28 MISTGLPELSSEKDVNYLRETLV---LDLTEEDAIKHFRSK 65 (90)
Q Consensus 28 M~~sgiP~l~~~~~i~~l~~rl~---l~~sd~eA~~~f~~l 65 (90)
|...|++++....-++-+++.|. +.+|++|+...+..+
T Consensus 44 L~~~g~~~lD~dav~~Gl~Dal~Gk~~~ls~eei~~~l~~~ 84 (88)
T 3b09_A 44 LAANSFEGIDIPAVQAGLADAFAGKESAVSMEELQVAFTEI 84 (88)
T ss_dssp HHHSCCTTCCHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 34568888765444677888873 468999988777554
No 60
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=29.21 E-value=58 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=24.8
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 135 ~~~Le~~~~~~ms~eeA~~la~~al~~a~~ 164 (234)
T 1iru_I 135 MAVFEDKFRPDMEEEEAKNLVSEAIAAGIF 164 (234)
T ss_dssp HHHHHHSCCTTCCHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 367888899999999999988888776553
No 61
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=28.47 E-value=55 Score=19.12 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCch
Q psy11388 51 LDLTEEDAIKHFRSKFGEALANSW 74 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~~~s~ 74 (90)
=++|.+||...+-.++++-.. .|
T Consensus 65 ~gms~eeA~~~YI~~v~~l~~-~~ 87 (89)
T 1hbk_A 65 ENLNREDAQKRYVDIVSEIFP-YW 87 (89)
T ss_dssp TTCCHHHHHHHHHHHHHHHCT-TT
T ss_pred cCCCHHHHHHHHHHHHHHHcc-cc
Confidence 589999999999999998664 45
No 62
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=28.19 E-value=50 Score=20.77 Aligned_cols=21 Identities=5% Similarity=0.235 Sum_probs=18.1
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-++.++.+|++
T Consensus 14 SyLP~Lt~eqI~kQV~yll~q 34 (118)
T 3zxw_B 14 SYLPPLSDAQIARQIQYAIDQ 34 (118)
T ss_dssp CCSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHhC
Confidence 467899999999999988876
No 63
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=28.09 E-value=90 Score=18.33 Aligned_cols=40 Identities=10% Similarity=-0.159 Sum_probs=29.7
Q ss_pred CCCCCCChh---HHHHHHHHc-cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 32 GLPELSSEK---DVNYLRETL-VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 32 giP~l~~~~---~i~~l~~rl-~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
|+|=+.... -+..+.+.- ..+++++.+...|..+|..|..
T Consensus 45 ~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~~ 88 (101)
T 3ret_A 45 EAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIA 88 (101)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Confidence 777665432 256666653 4789999999999999999885
No 64
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=28.07 E-value=43 Score=20.79 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=17.4
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-++.++-+|++
T Consensus 17 SyLP~lt~eqI~kQV~Yll~q 37 (110)
T 1svd_M 17 SYLPPMNAERIRAQIKYAIAQ 37 (110)
T ss_dssp TTSCCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 357899999999888888875
No 65
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=27.90 E-value=54 Score=21.86 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-+..+..
T Consensus 170 ~~~Le~~~~~~ms~eea~~la~~al~~~~~ 199 (233)
T 1iru_B 170 KTFLEKRYNEDLELEDAIHTAILTLKESFE 199 (233)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 467888899999999999988888876654
No 66
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=27.60 E-value=38 Score=24.77 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=44.0
Q ss_pred HhhCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhh
Q psy11388 28 MISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSWKTSLNWASHNLAK 87 (90)
Q Consensus 28 M~~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~~t~~~d~iH~~a~ 87 (90)
+++ .+||+.. +|.+.++++..-+.|.++|...+..+-+ .. .|...+-..++..-+
T Consensus 411 ~l~-~l~~~~~-~d~~~i~~~~~~~~~~~~a~~~~~~~~~--~~-~w~~~~~~~l~~~~~ 465 (477)
T 2vgq_A 411 ILP-YLPCLTA-RDQDRLRATCTLSGNRDTLWHLFNTLQR--RP-GWVEYFIAALRGCEL 465 (477)
T ss_dssp HGG-GCTTSCH-HHHHHHHHHHHHHCHHHHHHHHHHHHTT--ST-THHHHHHHHHHHTTC
T ss_pred hhc-cCccCcH-HHHHHHHHHHhccccHHHHHHHHHHHhh--CC-ChHHHHHHHHHHcCc
Confidence 355 7888874 8999999999999999999999998865 45 688888777765433
No 67
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=27.44 E-value=57 Score=23.61 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q psy11388 51 LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~~ 71 (90)
-+.|++||..++.++|+++..
T Consensus 286 ~g~s~eeA~~~v~~~i~~~~k 306 (382)
T 3kb9_A 286 HSLTLEEAIGEVRRRVEECIT 306 (382)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 389999999999999998765
No 68
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=27.06 E-value=44 Score=21.92 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.9
Q ss_pred HHHHHHHHhchHHHHHHH
Q psy11388 8 ERAFKILREHGSLILSLF 25 (90)
Q Consensus 8 ~~ay~~lR~~~~lil~L~ 25 (90)
...|..||..+++|.+|-
T Consensus 4 KTtfrllRgeSNLfysLA 21 (148)
T 3bqa_A 4 KTTFRLLRGESNLFYTLA 21 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred ccceeeccccchhheeHh
Confidence 357999999999998873
No 69
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=26.81 E-value=74 Score=21.33 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHc---cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETL---VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl---~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+ ..++|.+||.+...+-+..+..
T Consensus 170 ~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~ 202 (241)
T 1ryp_D 170 REFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ 202 (241)
T ss_dssp HHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc
Confidence 45677788 8999999999988888777653
No 70
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=26.58 E-value=30 Score=20.21 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 50 VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 50 ~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
.=++|.+||...+-.++++-..
T Consensus 61 l~gms~eeA~~~YI~~v~~l~~ 82 (86)
T 1st7_A 61 LKGKSQEDAEKEYIALVDQLIA 82 (86)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhh
Confidence 3699999999999999988654
No 71
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=26.35 E-value=66 Score=19.29 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCch
Q psy11388 51 LDLTEEDAIKHFRSKFGEALANSW 74 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~~~s~ 74 (90)
=++|.+||...+-.++++-.. .|
T Consensus 72 ~gmS~eeAm~~YI~lv~~l~~-~~ 94 (96)
T 2lbb_A 72 RGMSTESAKEAYVKLLDTLAP-SW 94 (96)
T ss_dssp TTCCHHHHHHHHHHHHHHHCG-GG
T ss_pred cCCCHHHHHHHHHHHHHHHhc-hh
Confidence 589999999999999998665 45
No 72
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=26.25 E-value=60 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.6
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-.+.++-+|.+
T Consensus 9 SyLP~ltdeqI~kQI~YlL~q 29 (139)
T 1bxn_I 9 SFLPELTDEQITKQLEYCLNQ 29 (139)
T ss_dssp TTSSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 357899999999888888876
No 73
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=26.15 E-value=66 Score=19.95 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=24.2
Q ss_pred HHHhchHHHHHHHHHHhhCCCCCCCChh
Q psy11388 13 ILREHGSLILSLFAMMISTGLPELSSEK 40 (90)
Q Consensus 13 ~lR~~~~lil~L~~lM~~sgiP~l~~~~ 40 (90)
.++.|...+.-++.=|++.|+|.-.+..
T Consensus 102 ~I~~Nf~~vy~lLDE~id~G~~~et~~~ 129 (142)
T 2vgl_S 102 DLVFNFYKVYTVVDEMFLAGEIRETSQT 129 (142)
T ss_dssp HHHHTHHHHHHHHHHHEETTEECCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEcCHH
Confidence 4889999999999999999999877543
No 74
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=25.85 E-value=77 Score=21.82 Aligned_cols=20 Identities=25% Similarity=0.067 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q psy11388 52 DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~ 71 (90)
+.|++||..++.++|++...
T Consensus 253 g~s~eeA~~~~~~~i~~~~~ 272 (320)
T 3bny_A 253 DVTAEAAKRVLFVMCREWEL 272 (320)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999987654
No 75
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=25.84 E-value=67 Score=20.04 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHhchHHHHHHHHHHhhCCCCCCCChhH-HHHHHHHccCCCCHHHHH
Q psy11388 13 ILREHGSLILSLFAMMISTGLPELSSEKD-VNYLRETLVLDLTEEDAI 59 (90)
Q Consensus 13 ~lR~~~~lil~L~~lM~~sgiP~l~~~~~-i~~l~~rl~l~~sd~eA~ 59 (90)
++..-++++.-++-||...|++ .+| ...|..|+. +..+..+.
T Consensus 59 l~~E~ADLlYHllVlL~~~gv~----l~dV~~eL~~R~~-gi~eK~~R 101 (115)
T 1yvw_A 59 VVKEMVDVFYHCFVLLAEKNIA----LEDVMREVKERNG-KLSRVGDR 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHH-HC------
T ss_pred HHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHhC-CchhhccC
Confidence 3456688999999999999987 345 567888887 66555444
No 76
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=25.50 E-value=50 Score=19.11 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=19.5
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~ 68 (90)
++.|-+.|. +++++++....++|.+
T Consensus 33 l~~La~ll~--ls~~~vE~~ls~mI~~ 57 (84)
T 1ufm_A 33 FEELGALLE--IPAAKAEKIASQMITE 57 (84)
T ss_dssp HHHHHHHTT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC--cCHHHHHHHHHHHHhC
Confidence 666766655 5799999999999875
No 77
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=25.30 E-value=29 Score=19.98 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=5.2
Q ss_pred hCCCCCCCChhHHHHHHHHccC
Q psy11388 30 STGLPELSSEKDVNYLRETLVL 51 (90)
Q Consensus 30 ~sgiP~l~~~~~i~~l~~rl~l 51 (90)
+||+|++....+|.-+-+.+.|
T Consensus 7 ~~~~~~~~~~~~V~~WL~~lgL 28 (82)
T 2kso_A 7 SSGLVPRGSHMTVSEWLESIKM 28 (82)
T ss_dssp -----------CHHHHHHHTTC
T ss_pred cCCCCCCCCcchHHHHHHHCCC
Confidence 5788888765555544444443
No 78
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=25.01 E-value=1.6e+02 Score=19.82 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q psy11388 52 DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~ 71 (90)
+.|++||..++.++|+++..
T Consensus 239 g~s~eeA~~~~~~~i~~~~~ 258 (300)
T 1di1_A 239 KLGIPATKRVLWSMTREWET 258 (300)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999988754
No 79
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=24.59 E-value=1.3e+02 Score=19.62 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=31.5
Q ss_pred hCCCCCCCChh---HHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLV-LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~-l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -++.+++.-. .+++++.++..|..+|..|..
T Consensus 29 ~~~~pI~dp~RE~eVL~r~~~~a~~~gL~~~~i~~ifr~Ii~~S~~ 74 (166)
T 2fp1_A 29 RAQLPIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEA 74 (166)
T ss_dssp HHTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 45788555421 3666666555 799999999999999999876
No 80
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=24.53 E-value=1e+02 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|+..+..++|.+||.+...+-+..+..
T Consensus 212 ~~~Le~~y~~~ms~eEAi~la~~aL~~a~~ 241 (294)
T 1q5r_H 212 KSALKKIYSPDSDEETALRAAIESLYDAAD 241 (294)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988888876654
No 81
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=23.68 E-value=56 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.7
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy11388 49 LVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 49 l~l~~sd~eA~~~f~~lI~~ 68 (90)
+.++|||+|-.+.+..+|++
T Consensus 10 yLP~ltd~qI~kQI~YlL~q 29 (138)
T 4f0h_B 10 FLPDLTDEQIKKQIDYMISK 29 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhC
Confidence 67899999988888887765
No 82
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=23.63 E-value=68 Score=21.40 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=24.2
Q ss_pred HHHHHHHccC-----CCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVL-----DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l-----~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+.. ++|.+||.+...+-+..+..
T Consensus 152 ~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~ 186 (233)
T 1ryp_N 152 NPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 186 (233)
T ss_dssp HHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 4567778888 99999999988887777654
No 83
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=23.51 E-value=57 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-.+.++-+|.+
T Consensus 9 SyLP~ltdeqI~kQI~Yll~q 29 (138)
T 1bwv_S 9 SFLPDLTDEQIKKQIDYMISK 29 (138)
T ss_dssp TTSCCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 357899999998888888775
No 84
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=23.29 E-value=58 Score=21.12 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.4
Q ss_pred HccCCCCHHHHHHHHHHHHHH
Q psy11388 48 TLVLDLTEEDAIKHFRSKFGE 68 (90)
Q Consensus 48 rl~l~~sd~eA~~~f~~lI~~ 68 (90)
.+.++|||+|-++.++.+|.+
T Consensus 16 SyLP~lt~eqI~kQI~YlL~q 36 (140)
T 1gk8_I 16 SYLPPLTDEQIAAQVDYIVAN 36 (140)
T ss_dssp TTSSCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 357899999999888888865
No 85
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=23.15 E-value=72 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.5
Q ss_pred HHHHHHHccC-------CCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVL-------DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l-------~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+.. ++|.+||.+...+-+..++.
T Consensus 170 ~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~ 206 (243)
T 1ryp_A 170 TTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALG 206 (243)
T ss_dssp HHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhc
Confidence 4567777777 99999999998888887765
No 86
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=22.99 E-value=1e+02 Score=19.83 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=31.3
Q ss_pred hCCCCCCCChh---HHHHHHHHc-cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETL-VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl-~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -++.+++.- ..+++++.++..|..+|..|..
T Consensus 26 ~~g~pI~Dp~RE~evL~~l~~~a~~~gL~~~~i~~ifr~Ii~~S~~ 71 (156)
T 2gbb_A 26 ENHLPIEDRIQEEKVINSAMAQAESLGLNGESIKPLMVAQINAAKA 71 (156)
T ss_dssp HTTCCSCCHHHHHHHHHHHHHHHHHTTBCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCChHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 47888666432 256666654 3499999999999999999875
No 87
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=22.95 E-value=66 Score=18.15 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q psy11388 53 LTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 53 ~sd~eA~~~f~~lI~~s~~ 71 (90)
.|.+||...|..+.++.--
T Consensus 12 ~t~eea~~~F~~LL~e~~V 30 (71)
T 1uzc_A 12 NTKEEAKQAFKELLKEKRV 30 (71)
T ss_dssp CSHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCc
Confidence 4789999999999988643
No 88
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=22.82 E-value=88 Score=23.40 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=20.9
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 44 YLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 44 ~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
++++. +.|++||..++.++|++++.
T Consensus 360 ~mke~---g~S~eeA~~~v~~~i~~~~~ 384 (433)
T 3v1v_A 360 IAERE---QLCERDAYLKAVEVHNELQH 384 (433)
T ss_dssp HHHHH---TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 45553 79999999999999998876
No 89
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=22.78 E-value=1.3e+02 Score=20.19 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=23.0
Q ss_pred HHHHHH---ccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 43 NYLRET---LVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 43 ~~l~~r---l~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|... +..++|.+||.+...+-+..+..
T Consensus 170 ~~Le~~~~~~~~~ms~eea~~la~~al~~~~~ 201 (244)
T 1ryp_G 170 AELEKLVDHHPEGLSAREAVKQAAKIIYLAHE 201 (244)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 345553 88999999999998888887765
No 90
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=22.75 E-value=88 Score=22.02 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhc
Q psy11388 42 VNYLRETLVLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 42 i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
...|...+..++|.+||.+...+-|..+..
T Consensus 212 ~~~Le~~y~~dms~eEAi~la~~aL~~a~~ 241 (287)
T 3nzj_K 212 YGVLDSNYKWDLSVEDALYLGKRSILAAAH 241 (287)
T ss_dssp HHHHHTSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Confidence 456788899999999999988888877664
No 91
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.59 E-value=87 Score=18.16 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=17.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy11388 50 VLDLTEEDAIKHFRSKFGEAL 70 (90)
Q Consensus 50 ~l~~sd~eA~~~f~~lI~~s~ 70 (90)
...+|.+||...|..+..+.-
T Consensus 11 ~~~~t~eea~~~Fk~LL~e~~ 31 (82)
T 2dod_A 11 RAIVPLEARMKQFKDMLLERG 31 (82)
T ss_dssp SSSCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHcC
Confidence 456899999999999998853
No 92
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=22.54 E-value=36 Score=23.20 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=10.3
Q ss_pred HHhhCCCCCCCCh
Q psy11388 27 MMISTGLPELSSE 39 (90)
Q Consensus 27 lM~~sgiP~l~~~ 39 (90)
+..+||||.|++.
T Consensus 12 iS~~SGIPdfR~~ 24 (235)
T 1s5p_A 12 ISAESGIRTFRAA 24 (235)
T ss_dssp HHHTTTCCCCCSS
T ss_pred hhhhhCCCCCCCC
Confidence 3458999999974
No 93
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=21.40 E-value=76 Score=18.47 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q psy11388 51 LDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 51 l~~sd~eA~~~f~~lI~~s~~ 71 (90)
=++|.+||...+-.++++-..
T Consensus 63 ~gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 63 KGTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999987554
No 94
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=21.15 E-value=95 Score=19.92 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=21.9
Q ss_pred HHHHc-cCCCCHHHHHHHHHHHHHHHhc
Q psy11388 45 LRETL-VLDLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 45 l~~rl-~l~~sd~eA~~~f~~lI~~s~~ 71 (90)
|..|. .++++++++...|+.+++.|..
T Consensus 97 lh~R~pL~El~~v~mr~vFE~l~~~A~~ 124 (132)
T 1s28_A 97 VHTRIPLLNLDNVEMRRVFEALLNLSGE 124 (132)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccChHhcccHHHHHHHHHHHHHHHH
Confidence 34444 4589999999999999999875
No 95
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=20.97 E-value=95 Score=18.75 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=30.4
Q ss_pred hCCCCCCCChh---HHHHHHHHccC-CCCHHHHHHHHHHHHHHHhc
Q psy11388 30 STGLPELSSEK---DVNYLRETLVL-DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 30 ~sgiP~l~~~~---~i~~l~~rl~l-~~sd~eA~~~f~~lI~~s~~ 71 (90)
..|+|=+.... -++.+++.-.- +++++.+...|..+|..|..
T Consensus 47 ~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if~~ii~~s~~ 92 (104)
T 2gtv_X 47 QLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLIEHNKA 92 (104)
T ss_dssp HHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHH
T ss_pred HCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 36888666432 25556555433 89999999999999998875
No 96
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=20.73 E-value=56 Score=19.72 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=27.0
Q ss_pred hCCCCCCCChhHHHHHHHHccCCCCHHHHHHHHHHHHHHHhcCch
Q psy11388 30 STGLPELSSEKDVNYLRETLVLDLTEEDAIKHFRSKFGEALANSW 74 (90)
Q Consensus 30 ~sgiP~l~~~~~i~~l~~rl~l~~sd~eA~~~f~~lI~~s~~~s~ 74 (90)
.+.||+=-..+.++...+.+.---++++.+.++.+-.++-.+..|
T Consensus 23 ~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~W 67 (102)
T 1yo3_A 23 NVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTW 67 (102)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCE
T ss_pred ECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCC
Confidence 455553322233444444443334678888888888888877655
No 97
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=84 Score=19.39 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCchhHH
Q psy11388 53 LTEEDAIKHFRSKFGEALANSWKTS 77 (90)
Q Consensus 53 ~sd~eA~~~f~~lI~~s~~~s~~t~ 77 (90)
-|.++|...|.++..+-.++.|..+
T Consensus 83 ~s~~~A~~~F~k~f~~Ktgn~w~~r 107 (124)
T 2eoc_A 83 TRLEDAKKDFEKKFREKTKNNWAER 107 (124)
T ss_dssp SSHHHHHHHHHHHHHHHHSSCSTTG
T ss_pred CCHHHHHHHHHHHHHHHHcCCcccc
Confidence 5899999999999998887788655
No 98
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=20.17 E-value=38 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q psy11388 52 DLTEEDAIKHFRSKFGEALA 71 (90)
Q Consensus 52 ~~sd~eA~~~f~~lI~~s~~ 71 (90)
+.|++||..++.++|+++..
T Consensus 493 g~s~eeA~~~i~~~ie~~wk 512 (569)
T 2j5c_A 493 NASEEEAREHVRSLIDQTWK 512 (569)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999998765
Done!