RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11388
(90 letters)
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 106 bits (264), Expect = 1e-28
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 3 FNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHF 62
F CERA+ ILR HG L L LFA+M + GLPELS KD+ YL+++L L TEE+A+KHF
Sbjct: 852 FRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHF 911
Query: 63 RSKFGEALANSWKTSLNWASHNLAKNNK 90
R KF EAL SWKT +NW +HN++K+N+
Sbjct: 912 RVKFNEALRESWKTKVNWLAHNVSKDNR 939
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 102 bits (254), Expect = 3e-27
Identities = 43/88 (48%), Positives = 64/88 (72%)
Query: 3 FNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHF 62
F CE A+ ILR HG+L ++LFA+M++ GLPEL+S KD+ YL+++L L +EE+A+K F
Sbjct: 1004 FRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQF 1063
Query: 63 RSKFGEALANSWKTSLNWASHNLAKNNK 90
+ KF EAL SW T +NW +H + K+ +
Sbjct: 1064 KQKFDEALRESWTTKVNWMAHTVRKDYR 1091
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol
3,4,5- triphosphate, wortmannin, H1047R, ATP-binding,
disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens}
PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 98.8 bits (245), Expect = 4e-26
Identities = 31/86 (36%), Positives = 57/86 (66%)
Query: 3 FNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHF 62
F C +A+ +R+H +L ++LF+MM+ +G+PEL S D+ Y+R+TL LD TE++A+++F
Sbjct: 1003 FQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQEALEYF 1062
Query: 63 RSKFGEALANSWKTSLNWASHNLAKN 88
+ +A W T ++W H + ++
Sbjct: 1063 MKQMNDARHGGWTTKMDWIFHTIKQH 1088
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 95.7 bits (237), Expect = 6e-25
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 3 FNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKDVNYLRETLVLDLTEEDAIKHF 62
F C +A+ LR H +L++ LF+MM+ TG+P+L+S++D+ Y+R+ L + +EEDA K+F
Sbjct: 868 FQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKYF 927
Query: 63 RSKFGEALANSWKTSLNWASHNLA 86
+ W NW H +
Sbjct: 928 LDQIEVCRDKGWTVQFNWFLHLVL 951
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 88.8 bits (219), Expect = 2e-22
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 3 FNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKD--VNYLRETLVLDLTEEDAIK 60
F QC A+ LR H +++L+LF++M+ +P+++ E D V + E L L LT+E+A++
Sbjct: 607 FRKQCYTAYLHLRRHANVMLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQ 666
Query: 61 HFRSKFGEALANSWKTSLNWASHNLA 86
H +S ++ + +L H
Sbjct: 667 HLQSLLDVSI-TAVMPALVEQIHRFT 691
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 84.1 bits (207), Expect = 7e-21
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 2 LFNTQCERAFKILREHGSLILSLFAMMISTGLPELSSEKD--VNYLRETLVLDLTEEDAI 59
F QC AF LR + +LIL+LF++M+ +P+++ E D V +++ LDL++E+A+
Sbjct: 532 EFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAV 591
Query: 60 KHFRSKFGEALANSWKTSLNWASH 83
+ +S E++ ++ ++ H
Sbjct: 592 HYMQSLIDESV-HALFAAVVEQIH 614
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 1e-05
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 32/83 (38%)
Query: 4 NTQ-----CERA-FKILREHGSLIL-SLFAMMISTG--LPE---LSSEKDVNYLRETLVL 51
TQ E+A F+ L+ G + + FA G L E L+S D V+
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFA-----GHSLGEYAALASLAD--------VM 1777
Query: 52 DLTEEDAIK--HFRSKFGEALAN 72
+ E ++ +R G +
Sbjct: 1778 SI--ESLVEVVFYR---GMTMQV 1795
Score = 25.0 bits (54), Expect = 5.0
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 33/89 (37%)
Query: 1 MLF--NTQCERAF-------KILR---EHG----SLILSLFAMMISTGLPELSSEKDVNY 44
+LF +C A+ IL E+ S +LS+ + L + + VN
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI------SNLTQEQVQDYVNK 355
Query: 45 LRETLVLDLTEEDAIKHFRSKFGEALANS 73
L ++ I +L N
Sbjct: 356 TNSH--LPAGKQVEI---------SLVNG 373
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.013
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 34/107 (31%)
Query: 3 FNTQCERAFKIL----------------REHGSLI-----------LSLFAMMISTGLPE 35
FN C KIL H SL SL + +
Sbjct: 262 FNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 36 LSSE-KDVNYLRETLVLDLTEEDA--IKHFRSKFGEALANSWKTSLN 79
L E N R +++ + + +++ + L ++SLN
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell
cycle control, DNA damage, transcription, NAD+,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 29.2 bits (65), Expect = 0.098
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 54 TEEDAIKHFRSKFGEALANSWKTSLNWASH 83
EDA K F KF E N+W ++ SH
Sbjct: 84 RLEDAKKDFEKKFREKTKNNWAERDHFVSH 113
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO
structural genomics consortium, SGC, lyase; 1.99A {Homo
sapiens}
Length = 148
Score = 27.3 bits (61), Expect = 0.57
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 17 HGSLILSLFAMMISTGLPELSSEKDVNYLRETL 49
HG LI L + ++ T +P +L + +
Sbjct: 64 HGVLINGLISALLGTKMP----GPGCVFLSQEI 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.7 bits (60), Expect = 0.99
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 44 YLRETL-----------VLDLTEEDAIKHF 62
Y RETL VLD++ E+A + F
Sbjct: 805 YNRETLEVHYKGKTVSEVLDMSIEEAAEFF 834
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.3 bits (59), Expect = 1.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 44 YLRETL-----------VLDLTEEDAIKHF 62
Y RETL VLD+T EDA+ F
Sbjct: 485 YNRETLEVTYKGKNIAEVLDMTVEDALDFF 514
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.3 bits (59), Expect = 1.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 44 YLRETL-----------VLDLTEEDAIKHF 62
Y RETL VLD+T EDA+ F
Sbjct: 787 YNRETLEVTYKGKNIAEVLDMTVEDALDFF 816
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 75 KTSLNWASHNLAKNN 89
+T L WA NL N
Sbjct: 572 RTYLEWAERNLRLNG 586
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 26.3 bits (59), Expect = 1.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 11/30 (36%)
Query: 44 YLRETL-----------VLDLTEEDAIKHF 62
Y ETL VL LT ++A F
Sbjct: 672 YNAETLEVEYRGKNIADVLALTVDEAHDFF 701
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 25.9 bits (58), Expect = 1.9
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 11/30 (36%)
Query: 44 YLRETL-----------VLDLTEEDAIKHF 62
Y RETL +LD+T ++A++ F
Sbjct: 747 YNRETLEITYKGKNISDILDMTVDEALEFF 776
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 24.3 bits (52), Expect = 8.5
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 43 NYLRETLVLDLTEEDAIKHFRSKF 66
N+ ++ LDL++++ + F
Sbjct: 302 NWNKKIYALDLSKDEVLNWLFDLF 325
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 24.1 bits (53), Expect = 8.5
Identities = 2/23 (8%), Positives = 8/23 (34%)
Query: 39 EKDVNYLRETLVLDLTEEDAIKH 61
E + + + + E ++
Sbjct: 174 ENHFKKSKIDHINEESWEKVVEF 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.375
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,320,188
Number of extensions: 63932
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 32
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)