BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11389
         (73 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P61561|ENW1_GORGO ERV-W1 provirus ancestral Env polyprotein OS=Gorilla gorilla
           gorilla GN=ERVW-1 PE=3 SV=1
          Length = 538

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 30  DVAARNPTNATPLNLCTPEDFKPFVASLMNSEW 62
           +V+A+NPTN     +C P DF+P+V+  +  EW
Sbjct: 177 EVSAQNPTNCW---ICLPLDFRPYVSIPVPEEW 206


>sp|P61562|ENW1_HYLPI ERV-W1 provirus ancestral Env polyprotein OS=Hylobates pileatus
           GN=ERVW-1 PE=3 SV=1
          Length = 538

 Score = 29.3 bits (64), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 30  DVAARNPTNATPLNLCTPEDFKPFVASLMNSEW 62
           +V+A+NPTN     +C P DF+P+V+  +  +W
Sbjct: 177 EVSAQNPTNCW---MCLPLDFRPYVSIPVPEQW 206


>sp|Q2L4Q9|PRS53_HUMAN Serine protease 53 OS=Homo sapiens GN=PRSS53 PE=2 SV=1
          Length = 553

 Score = 28.9 bits (63), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 24  KGNEIVDVAARNPTNATPLNLCTPEDFKPFVASLMNSEWQSQWDNVPNT 72
           +G+++  +   +PT  TPL L  P    PF AS   + W     + P T
Sbjct: 125 QGSDLALLQLAHPTTHTPLCLPQPAHRFPFGASCWATGWDQDTSDAPGT 173


>sp|Q8AYS8|KCMA1_CHICK Calcium-activated potassium channel subunit alpha-1 OS=Gallus
           gallus GN=KCNMA1 PE=1 SV=2
          Length = 1137

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 11  LRYLSNPICHCGIKGNEIVDVAARNPTNATPLNLCTPEDFK 51
           L+YL    CHCG+K  E   +     T A     C P D K
Sbjct: 69  LKYLWTVCCHCGVKNKEAQKINGGGDTQAD--GACKPTDEK 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,539,437
Number of Sequences: 539616
Number of extensions: 1072428
Number of successful extensions: 2179
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2177
Number of HSP's gapped (non-prelim): 9
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)