RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11389
         (73 letters)



>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
           Pyrococcus woesei [TaxId: 2262]}
          Length = 361

 Score = 25.2 bits (54), Expect = 0.83
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 46  TPEDFKPFVASLMNSEWQSQWDNVPN 71
           + E+    + +      +   D V N
Sbjct: 85  SKEELVRLIQTAHAYGIKVIADVVIN 110


>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
           ksm-k38 [TaxId: 1409]}
          Length = 390

 Score = 24.7 bits (52), Expect = 1.2
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 46  TPEDFKPFVASLMNSEWQSQWDNVPN 71
           T    +  + SL +++     D V N
Sbjct: 79  TKAQLERAIGSLKSNDINVYGDVVMN 104


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 23.8 bits (50), Expect = 2.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 20  HCGIKGNEIVDVAARN 35
           H G   NE VD  AR 
Sbjct: 124 HTGHPENERVDREARR 139


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 23.4 bits (49), Expect = 3.5
 Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 4/23 (17%)

Query: 19  CHCGIKGNEIVD----VAARNPT 37
            H G   NE  D     AA NPT
Sbjct: 121 GHAGHPENERADELARAAAMNPT 143


>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 22.9 bits (48), Expect = 4.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 20  HCGIKGNEIVDVAAR 34
           H GI GN+ VD    
Sbjct: 109 HKGIGGNQEVDHLVS 123


>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
           [TaxId: 1416]}
          Length = 394

 Score = 23.0 bits (48), Expect = 5.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 46  TPEDFKPFVASLMNSEWQSQWDNVPN 71
           T    +  V SL N+  Q   D V N
Sbjct: 77  TRSQLQAAVTSLKNNGIQVYGDVVMN 102


>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
           maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
          Length = 357

 Score = 22.9 bits (48), Expect = 5.8
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 46  TPEDFKPFVASLMNSEWQSQWDNVPN 71
           +    +   ++L  +  +  +D VPN
Sbjct: 91  SDAQLRQAASALGGAGVKVLYDVVPN 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.432 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,829
Number of extensions: 10731
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 11
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)