BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11391
(112 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|290562083|gb|ADD38438.1| DNA-directed RNA polymerase III subunit RPC8 [Lepeophtheirus
salmonis]
Length = 200
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 5/88 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
++LGFFEDI +PPE LQ P RFDE +QVWVWE+ E G KHDLFMDPG++I+FRVTS+ F
Sbjct: 99 ISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
++TSP P P SE KIPY+
Sbjct: 159 SDTSPNVAPTEESSEPNSE----KIPYT 182
>gi|225711416|gb|ACO11554.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 203
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
V+LGFFEDI IPPE LQ P RFDE +QVWVWE+ E G+KHDLFMDPG++I+FRVT+E F
Sbjct: 99 VSLGFFEDIWIPPEALQHPYRFDEADQVWVWEYPTEDGEKHDLFMDPGEEIRFRVTAETF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
++TSP P+ +G G D KIPY+
Sbjct: 159 SDTSPNVDPNA-EGQSGESND--KIPYT 183
>gi|242004630|ref|XP_002423183.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212506148|gb|EEB10445.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 200
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
+VTLGFF+DI+IP LQ PSRFDE EQVWVWE+ + +KHDLFMD G+ I+FRVT+E F
Sbjct: 98 VVTLGFFDDIIIPSSALQHPSRFDEAEQVWVWEYQVDEEKHDLFMDIGEPIRFRVTAETF 157
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
ETSP+ + D G V+T K+PYS
Sbjct: 158 EETSPVGPENSSD---GDSVET-KVPYS 181
>gi|225711736|gb|ACO11714.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 217
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
V+LGFFEDI IPPE LQ P RFDE +QVWVWE+ E G+KHDLFMDPG++I+FRVT+E F
Sbjct: 99 VSLGFFEDIWIPPEALQHPYRFDEADQVWVWEYPTEDGEKHDLFMDPGEEIRFRVTAETF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPY 87
++TSP P+ +G G + PY
Sbjct: 159 SDTSPNVDPNA-EGQSGRAMIKSPTPY 184
>gi|241570289|ref|XP_002402677.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215502059|gb|EEC11553.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|442750295|gb|JAA67307.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 200
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 68/87 (78%), Gaps = 2/87 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++GFF+DILIPP+ LQ PSRFDE EQ+WVWE++++ KHD+FMD G++I+FRV +E F
Sbjct: 99 VSMGFFDDILIPPDALQHPSRFDEAEQLWVWEYESDDKKHDMFMDLGEQIRFRVVAETFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP+ P++ + + +E +IPYS
Sbjct: 159 DTSPVG-PEMAEMSE-NESKEKRIPYS 183
>gi|395540688|ref|XP_003772284.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8
[Sarcophilus harrisii]
Length = 204
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP P E + PY+
Sbjct: 159 DTSPTGPSSAATSTPSEEAPRKEAPYT 185
>gi|291243945|ref|XP_002741858.1| PREDICTED: hypothetical protein isoform 1 [Saccoglossus
kowalevskii]
Length = 204
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 62/86 (72%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DI+IPP+ LQQPS+FDE EQVWVWE++ + HDLFMD +KI+FRV E F
Sbjct: 99 VSLGFFDDIVIPPDALQQPSKFDEAEQVWVWEYETDEGTHDLFMDINEKIRFRVVDETFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPY 87
+T+PI I + + +E D + PY
Sbjct: 159 DTTPIGPRTIVEVSEVTETDVKRSPY 184
>gi|157130759|ref|XP_001661998.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti]
gi|108871791|gb|EAT36016.1| AAEL011866-PA [Aedes aegypti]
Length = 231
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 62/90 (68%), Gaps = 6/90 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIPP LQ PSRF+E EQ WVWE+ E G KHDL+MD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPPSALQHPSRFEEAEQAWVWEYPLEDGKKHDLYMDIGESIKFRVSGEVF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTP---KIPY 87
E+SPI PD AP + T K PY
Sbjct: 159 EESSPIGPPD--QEAPSTSTTTTEANKTPY 186
>gi|332231333|ref|XP_003264851.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Nomascus leucogenys]
gi|441617712|ref|XP_004088468.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nomascus
leucogenys]
Length = 204
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 60/87 (68%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP A E+ + PY+
Sbjct: 159 DTSPTGPSSADATASSEELPKKEAPYT 185
>gi|380018290|ref|XP_003693065.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis florea]
Length = 203
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G+KHDLFMD G+ I+FRV SE F
Sbjct: 99 VTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + P+I SE PY+ G
Sbjct: 159 TEALP-TGPNISGETETSEAKNIS-PYTLG 186
>gi|91092914|ref|XP_971430.1| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa
polypeptide [Tribolium castaneum]
gi|270003098|gb|EEZ99545.1| hypothetical protein TcasGA2_TC000127 [Tribolium castaneum]
Length = 199
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 6/88 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIPP LQ PS+F+E EQ WVWE+D +G KHDLFMD G+ IKFRVT+E F
Sbjct: 99 VTLGFFDDILIPPSALQHPSKFNETEQAWVWEYDTGDGCKHDLFMDAGETIKFRVTAEFF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
ET P + + SE K+PYS
Sbjct: 159 NETCPTG--SLQETQDKSE---NKVPYS 181
>gi|48096324|ref|XP_394665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis mellifera]
Length = 203
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G+KHDLFMD G+ I+FRV SE F
Sbjct: 99 VTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + P+I SE PY+ G
Sbjct: 159 TEALP-TGPNISGETETSEAKNIS-PYTLG 186
>gi|225719760|gb|ACO15726.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus clemensi]
Length = 203
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
V+LGFFEDI IPPE LQ P RFDE +QVWVWE+ E G+KHDLFMD G++I+FRVT+E F
Sbjct: 99 VSLGFFEDIWIPPESLQHPYRFDEADQVWVWEYPTEDGEKHDLFMDTGEEIRFRVTAESF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP P+ + + D+ K+PYS
Sbjct: 159 IDTSPNVDPN-PESRSTQQPDSDKLPYS 185
>gi|431900039|gb|ELK07974.1| DNA-directed RNA polymerase III subunit RPC8 [Pteropus alecto]
Length = 204
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 60/87 (68%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP A E+ + PY+
Sbjct: 159 DTSPSGPSSAEATASSEELPKKEAPYT 185
>gi|348569566|ref|XP_003470569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Cavia
porcellus]
Length = 204
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP A E + PYS
Sbjct: 159 DTSPTGPRSAEAAATSEEPPRKEAPYS 185
>gi|332376875|gb|AEE63577.1| unknown [Dendroctonus ponderosae]
Length = 215
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 61/88 (69%), Gaps = 4/88 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIPP LQ PS+F+E EQ WVWE+D +G KHDLF+D GD I+FRVT E F
Sbjct: 113 VTLGFFDDILIPPIALQYPSKFNETEQAWVWEYDVGDGSKHDLFIDAGDSIRFRVTGERF 172
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
ET P + P I A E K+PYS
Sbjct: 173 EETCP-AGPAIMQEA--EETTENKVPYS 197
>gi|291243947|ref|XP_002741859.1| PREDICTED: hypothetical protein isoform 2 [Saccoglossus
kowalevskii]
Length = 176
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Query: 3 TLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTE 62
+LGFF+DI+IPP+ LQQPS+FDE EQVWVWE++ + HDLFMD +KI+FRV E F +
Sbjct: 72 SLGFFDDIVIPPDALQQPSKFDEAEQVWVWEYETDEGTHDLFMDINEKIRFRVVDETFVD 131
Query: 63 TSPISCPDIHDGAPGSEVDTPKIPY 87
T+PI I + + +E D + PY
Sbjct: 132 TTPIGPRTIVEVSEVTETDVKRSPY 156
>gi|170043715|ref|XP_001849521.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
gi|167867047|gb|EDS30430.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
Length = 239
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIPP LQ PSRF+E EQ WVWE+ E G KHDL+MD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPPSALQHPSRFEEAEQAWVWEYPLEDGKKHDLYMDIGESIKFRVSGEVF 158
Query: 61 TETSPISCPD 70
E+SPI PD
Sbjct: 159 EESSPIGPPD 168
>gi|297706308|ref|XP_002829986.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Pongo abelii]
Length = 204
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFHDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP A E+ + PY+
Sbjct: 159 DTSPTGPSSADATASSEELPKKEAPYT 185
>gi|351708339|gb|EHB11258.1| DNA-directed RNA polymerase III subunit RPC8 [Heterocephalus
glaber]
Length = 204
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEVEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP A E + PYS
Sbjct: 159 DTSPTGPRSAEAAATSEEPPKKEAPYS 185
>gi|410925771|ref|XP_003976353.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Takifugu rubripes]
Length = 215
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 57/76 (75%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
VT+GFF+DILIPPE LQQP++FDE EQVWVWE++ + HDL+MD G++I+FRVT E+F
Sbjct: 99 VTMGFFDDILIPPESLQQPAKFDEAEQVWVWEYETDEGAHDLYMDQGEEIRFRVTDEVFV 158
Query: 62 ETSPISCPDIHDGAPG 77
+TSP AP
Sbjct: 159 DTSPTGPSAAEKEAPA 174
>gi|224095057|ref|XP_002197392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Taeniopygia guttata]
Length = 206
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DI+IPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDIVIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFV 158
Query: 62 ETSPI--SCPDIHDGAPGSEVDTPKIPYS 88
+TSP S + EV + PY+
Sbjct: 159 DTSPTGPSSAEASTSNAAEEVQKKEAPYT 187
>gi|260824541|ref|XP_002607226.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
gi|229292572|gb|EEN63236.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
Length = 203
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPP+ LQQPS+FDE EQVWVWE++ E HDLFMD ++I+FRV E+F
Sbjct: 99 VSLGFFDDILIPPDALQQPSKFDESEQVWVWEYETEEGTHDLFMDINEEIRFRVVDEVFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+T+P + P + + A S+ + K PY+
Sbjct: 159 DTTP-TGPKVSEAAE-SDKEAKKSPYA 183
>gi|289742667|gb|ADD20081.1| DNA-directed RNA polymerase subunit E' [Glossina morsitans
morsitans]
Length = 246
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIPP LQ PSRFDE E+ WVWE+ ++G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPPTALQHPSRFDETERAWVWEYPLDDGGKHDLFMDIGEPIKFRVSREIF 158
Query: 61 TETSPISCPDIHDGAPGS 78
E+SPI P PG+
Sbjct: 159 EESSPIGPPKNEALQPGT 176
>gi|126343684|ref|XP_001363572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Monodelphis domestica]
Length = 204
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP E + PY+
Sbjct: 159 DTSPTGPSSAEASTSSDEAPKKEAPYT 185
>gi|403282911|ref|XP_003932877.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Saimiri
boliviensis boliviensis]
Length = 204
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP E+ + PY+
Sbjct: 159 DTSPTGPSSAEATTSSEELPKKEAPYT 185
>gi|380018292|ref|XP_003693066.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Apis florea]
Length = 177
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
+TLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G+KHDLFMD G+ I+FRV SE F
Sbjct: 73 LTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETF 132
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + P+I SE PY+ G
Sbjct: 133 TEALP-TGPNISGETETSEAKNIS-PYTLG 160
>gi|328790209|ref|XP_003251392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Apis
mellifera]
Length = 177
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
+TLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G+KHDLFMD G+ I+FRV SE F
Sbjct: 73 LTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETF 132
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + P+I SE PY+ G
Sbjct: 133 TEALP-TGPNISGETETSEAKNIS-PYTLG 160
>gi|432870761|ref|XP_004071835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Oryzias latipes]
Length = 185
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 5/86 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
VT+GFF+DILIPPE LQQP++FDE EQVW+WE++ + HDL+MD G++I+FRVT E+F
Sbjct: 70 VTMGFFDDILIPPESLQQPAKFDEAEQVWLWEYETDEGAHDLYMDQGEEIRFRVTDEVFV 129
Query: 62 ETSPI----SCPDIHDGAPGSEVDTP 83
+TSP + PD + PG P
Sbjct: 130 DTSPTGPAAATPD-NAAQPGQSTAAP 154
>gi|65301135|ref|NP_001018062.1| DNA-directed RNA polymerase III subunit RPC8 isoform b [Homo
sapiens]
gi|332859902|ref|XP_003317311.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan troglodytes]
gi|16878080|gb|AAH17248.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|119580842|gb|EAW60438.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_b [Homo sapiens]
Length = 175
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP + P D SE + PK PY+
Sbjct: 130 DTSP-TGPSSADATTSSE-ELPKKEAPYT 156
>gi|432870759|ref|XP_004071834.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Oryzias latipes]
Length = 214
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 5/86 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
VT+GFF+DILIPPE LQQP++FDE EQVW+WE++ + HDL+MD G++I+FRVT E+F
Sbjct: 99 VTMGFFDDILIPPESLQQPAKFDEAEQVWLWEYETDEGAHDLYMDQGEEIRFRVTDEVFV 158
Query: 62 ETSPI----SCPDIHDGAPGSEVDTP 83
+TSP + PD + PG P
Sbjct: 159 DTSPTGPAAATPD-NAAQPGQSTAAP 183
>gi|340716162|ref|XP_003396570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Bombus terrestris]
Length = 203
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G KHDLFMD G+ I+FRV SE F
Sbjct: 99 VTLGFFEDIVIPPNKLQHPSRFDQIEQAWVWEYDTGDGQKHDLFMDAGEIIRFRVISETF 158
Query: 61 TETSPISCPDIHDGAPGSEV-DTPKIPYSYG 90
TE P + P++ SE +TP PY+ G
Sbjct: 159 TEALP-TGPNMSGETEKSEAKNTP--PYTLG 186
>gi|388453623|ref|NP_001253541.1| DNA-directed RNA polymerase III subunit RPC8 [Macaca mulatta]
gi|402884366|ref|XP_003905657.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Papio
anubis]
gi|90077470|dbj|BAE88415.1| unnamed protein product [Macaca fascicularis]
gi|355563711|gb|EHH20273.1| hypothetical protein EGK_03090 [Macaca mulatta]
gi|355785028|gb|EHH65879.1| hypothetical protein EGM_02735 [Macaca fascicularis]
gi|380810200|gb|AFE76975.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|383416259|gb|AFH31343.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|384945610|gb|AFI36410.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
Length = 204
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP + P D SE + PK PY+
Sbjct: 159 DTSP-TGPSSADATTSSE-ELPKKEAPYT 185
>gi|24475814|ref|NP_612211.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|65301161|ref|NP_001018060.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|332859900|ref|XP_001169430.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan troglodytes]
gi|397487166|ref|XP_003814678.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan paniscus]
gi|397487168|ref|XP_003814679.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan paniscus]
gi|426394612|ref|XP_004063585.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Gorilla gorilla gorilla]
gi|426394614|ref|XP_004063586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Gorilla gorilla gorilla]
gi|29428071|sp|Q9Y535.1|RPC8_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H; AltName:
Full=RNA polymerase III subunit 22.9 kDa subunit;
Short=RPC22.9
gi|24429623|gb|AAM18217.1| RNA polymerase III subunit RPC8 [Homo sapiens]
gi|47678449|emb|CAG30345.1| dJ347H13.5 [Homo sapiens]
gi|56789518|gb|AAH88367.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|109451158|emb|CAK54440.1| POLR3H [synthetic construct]
gi|109451736|emb|CAK54739.1| POLR3H [synthetic construct]
gi|119580841|gb|EAW60437.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580843|gb|EAW60439.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580844|gb|EAW60440.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580845|gb|EAW60441.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|168270638|dbj|BAG10112.1| DNA-directed RNA polymerase III subunit RPC8 [synthetic construct]
gi|254071291|gb|ACT64405.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|254071293|gb|ACT64406.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|410227528|gb|JAA10983.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410257006|gb|JAA16470.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410300726|gb|JAA28963.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410352625|gb|JAA42916.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
Length = 204
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 4/89 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P D SE + PK PY+
Sbjct: 159 DTSPTG-PSSADATTSSE-ELPKKEAPYT 185
>gi|395753475|ref|XP_002831233.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Pongo
abelii]
Length = 239
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 134 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 193
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSL 94
+TSP P D SE ++P Y+L
Sbjct: 194 DTSPTG-PSSADATTSSE----ELPKKEAPYTL 221
>gi|350396628|ref|XP_003484613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Bombus impatiens]
Length = 203
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G KHDLFMD G+ I+FRV SE F
Sbjct: 99 VTLGFFEDIVIPPNKLQHPSRFDQIEQAWVWEYDTGDGQKHDLFMDAGEIIRFRVISETF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + P++ SE PY+ G
Sbjct: 159 TEALP-TGPNMSGETEKSEAKNTS-PYTLG 186
>gi|13359203|dbj|BAB33335.1| KIAA1665 protein [Homo sapiens]
Length = 217
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 4/89 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 112 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 171
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P D SE + PK PY+
Sbjct: 172 DTSPTG-PSSADATTSSE-ELPKKEAPYT 198
>gi|50540012|ref|NP_001002476.1| DNA-directed RNA polymerase III subunit RPC8 [Danio rerio]
gi|49903087|gb|AAH76336.1| Zgc:92878 [Danio rerio]
Length = 214
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ + HDL+MD G++I+FRVT E+F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETDEGTHDLYMDQGEEIRFRVTDEVFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|348511267|ref|XP_003443166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Oreochromis niloticus]
Length = 214
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 55/64 (85%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
VT+GFF+DILIPPE LQQP++FDE EQVW+WE++ + HDL+MD G++I+FRVT E+F
Sbjct: 99 VTMGFFDDILIPPESLQQPAKFDEAEQVWLWEYETDEGAHDLYMDQGEEIRFRVTDEVFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|195440052|ref|XP_002067873.1| GK12491 [Drosophila willistoni]
gi|194163958|gb|EDW78859.1| GK12491 [Drosophila willistoni]
Length = 245
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRVT E+F
Sbjct: 99 VTLGFFDDILIPQAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVTREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|195018138|ref|XP_001984729.1| GH14863 [Drosophila grimshawi]
gi|193898211|gb|EDV97077.1| GH14863 [Drosophila grimshawi]
Length = 246
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G+KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGNKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|72021379|ref|XP_796543.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
gi|72148305|ref|XP_795389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
Length = 203
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++LGFF+DI++PPE LQQP +FDE EQ+WVW+++ E HD+FMD ++I+FRV E+FT
Sbjct: 99 ISLGFFDDIVVPPEALQQPCKFDETEQLWVWQYEAEEGTHDMFMDINEEIRFRVVDEVFT 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+T+P+ P+ A E +T K PYS
Sbjct: 159 DTTPVG-PEDGLEAGAEENETKKSPYS 184
>gi|118082710|ref|XP_416229.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Gallus
gallus]
gi|326912007|ref|XP_003202346.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Meleagris gallopavo]
Length = 206
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++GFF+DI+IPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSIGFFDDIVIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFV 158
Query: 62 ETSPI--SCPDIHDGAPGSEVDTPKIPYS 88
+TSP S + EV + PY+
Sbjct: 159 DTSPTGPSSAEASTSNATEEVQKKEAPYT 187
>gi|417414291|gb|JAA53443.1| Putative dna-directed rna polymerase iii subunit rpc8, partial
[Desmodus rotundus]
Length = 192
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 60/87 (68%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQ+WVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQMWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP + E+ + PY+
Sbjct: 159 DTSPSGPSSAEAASTSEELPKKEAPYT 185
>gi|195326872|ref|XP_002030149.1| GM25288 [Drosophila sechellia]
gi|195589569|ref|XP_002084524.1| GD14319 [Drosophila simulans]
gi|194119092|gb|EDW41135.1| GM25288 [Drosophila sechellia]
gi|194196533|gb|EDX10109.1| GD14319 [Drosophila simulans]
Length = 240
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|195493530|ref|XP_002094458.1| GE21834 [Drosophila yakuba]
gi|194180559|gb|EDW94170.1| GE21834 [Drosophila yakuba]
Length = 240
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|194869246|ref|XP_001972417.1| GG15519 [Drosophila erecta]
gi|190654200|gb|EDV51443.1| GG15519 [Drosophila erecta]
Length = 240
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|118792599|ref|XP_320407.3| AGAP012122-PA [Anopheles gambiae str. PEST]
gi|116116974|gb|EAA00210.3| AGAP012122-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
+TLGFF+DILIPP LQ PSR++E EQ WVWE+ E G+ HDL+MD G+ IKFRV+ E+F
Sbjct: 99 ITLGFFDDILIPPSALQHPSRYEEAEQAWVWEYPLEDGNTHDLYMDIGENIKFRVSGEVF 158
Query: 61 TETSPISCPD 70
E+SPI PD
Sbjct: 159 EESSPIGPPD 168
>gi|24662815|ref|NP_648490.1| CG7339, isoform A [Drosophila melanogaster]
gi|442631740|ref|NP_001261720.1| CG7339, isoform B [Drosophila melanogaster]
gi|7294695|gb|AAF50032.1| CG7339, isoform A [Drosophila melanogaster]
gi|21428376|gb|AAM49848.1| GM16372p [Drosophila melanogaster]
gi|220949964|gb|ACL87525.1| CG7339-PA [synthetic construct]
gi|220959072|gb|ACL92079.1| CG7339-PA [synthetic construct]
gi|440215643|gb|AGB94414.1| CG7339, isoform B [Drosophila melanogaster]
Length = 240
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|312382991|gb|EFR28239.1| hypothetical protein AND_04066 [Anopheles darlingi]
Length = 249
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
+TLGFF+DILIPP LQ PSR++E EQ WVWE+ E G+ HDL+MD G+ IKFRV+ E+F
Sbjct: 99 ITLGFFDDILIPPSALQHPSRYEETEQAWVWEYPLEDGNTHDLYMDIGESIKFRVSGEVF 158
Query: 61 TETSPISCPD 70
E+SPI PD
Sbjct: 159 EESSPIGPPD 168
>gi|149065823|gb|EDM15696.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 196
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 91 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 150
Query: 62 ETSP 65
+TSP
Sbjct: 151 DTSP 154
>gi|350396631|ref|XP_003484614.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Bombus impatiens]
Length = 177
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
+TLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G KHDLFMD G+ I+FRV SE F
Sbjct: 73 LTLGFFEDIVIPPNKLQHPSRFDQIEQAWVWEYDTGDGQKHDLFMDAGEIIRFRVISETF 132
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + P++ SE PY+ G
Sbjct: 133 TEALP-TGPNMSGETEKSEAKNTS-PYTLG 160
>gi|383853110|ref|XP_003702067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Megachile rotundata]
Length = 204
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G+KHDLFMD G+ I+FRV SE F
Sbjct: 99 VTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + SE PY+ G
Sbjct: 159 TEALPTGPNMSGENVEKSESKNTS-PYTLG 187
>gi|281340938|gb|EFB16522.1| hypothetical protein PANDA_019485 [Ailuropoda melanoleuca]
Length = 192
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|195128795|ref|XP_002008847.1| GI13714 [Drosophila mojavensis]
gi|193920456|gb|EDW19323.1| GI13714 [Drosophila mojavensis]
Length = 245
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ ++G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLDDGGKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|194748262|ref|XP_001956568.1| GF25280 [Drosophila ananassae]
gi|190623850|gb|EDV39374.1| GF25280 [Drosophila ananassae]
Length = 244
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|195379674|ref|XP_002048603.1| GJ14059 [Drosophila virilis]
gi|194155761|gb|EDW70945.1| GJ14059 [Drosophila virilis]
Length = 246
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGGKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>gi|148672601|gb|EDL04548.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_b
[Mus musculus]
Length = 189
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|73968964|ref|XP_858018.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Canis lupus familiaris]
Length = 175
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|410965707|ref|XP_003989383.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Felis catus]
Length = 175
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|301787831|ref|XP_002929329.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Ailuropoda melanoleuca]
Length = 175
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|410965705|ref|XP_003989382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Felis catus]
Length = 204
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|301787829|ref|XP_002929328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Ailuropoda melanoleuca]
Length = 204
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|27229271|ref|NP_084505.2| DNA-directed RNA polymerase III subunit RPC8 [Mus musculus]
gi|187937020|ref|NP_001120767.1| DNA-directed RNA polymerase III subunit RPC8 [Rattus norvegicus]
gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
AltName: Full=DNA-directed RNA polymerase III subunit H;
AltName: Full=RNA polymerase III subunit C7
gi|14789799|gb|AAH10793.1| Polymerase (RNA) III (DNA directed) polypeptide H [Mus musculus]
gi|26387053|dbj|BAB31893.2| unnamed protein product [Mus musculus]
gi|148672603|gb|EDL04550.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_d
[Mus musculus]
gi|149065818|gb|EDM15691.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065819|gb|EDM15692.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065820|gb|EDM15693.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065822|gb|EDM15695.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|187469207|gb|AAI67088.1| Polr3h protein [Rattus norvegicus]
Length = 204
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|73968962|ref|XP_849136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Canis lupus familiaris]
Length = 204
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|344296184|ref|XP_003419789.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Loxodonta africana]
Length = 175
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|354504595|ref|XP_003514359.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cricetulus griseus]
gi|344257851|gb|EGW13955.1| DNA-directed RNA polymerase III subunit RPC8 [Cricetulus griseus]
Length = 175
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDETEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|355712777|gb|AES04462.1| polymerase III polypeptide H [Mustela putorius furo]
Length = 203
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|195174185|ref|XP_002027860.1| GL16275 [Drosophila persimilis]
gi|194115536|gb|EDW37579.1| GL16275 [Drosophila persimilis]
Length = 240
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPQAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSP+ P
Sbjct: 159 EETSPVGPP 167
>gi|344296182|ref|XP_003419788.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Loxodonta africana]
Length = 204
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|327272738|ref|XP_003221141.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Anolis carolinensis]
Length = 206
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DI+IPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDIIIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDRGEEIRFRVVDETFI 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|213512140|ref|NP_001134466.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
gi|209733538|gb|ACI67638.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
Length = 208
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 54/64 (84%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DI+IPPE LQQP++FDE EQVWVWE++ + HDL+MD G+ I+FRVT E+F
Sbjct: 99 VSLGFFDDIVIPPESLQQPAKFDEAEQVWVWEYETDEGAHDLYMDQGEDIRFRVTDEVFL 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|125979739|ref|XP_001353902.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
gi|54640887|gb|EAL29638.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
Length = 240
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSP+ P
Sbjct: 159 EETSPVGPP 167
>gi|395820252|ref|XP_003783487.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Otolemur
garnettii]
Length = 361
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FD+ EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 256 VSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 315
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP E + PY+
Sbjct: 316 DTSPTGPSSAEATTSSEEQPKKEAPYT 342
>gi|346470681|gb|AEO35185.1| hypothetical protein [Amblyomma maculatum]
Length = 198
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++GFF+DILI P+GLQ PSRFDE EQ+WVW++++E KHD+FMD G++I+FRV E F
Sbjct: 99 VSMGFFDDILITPDGLQHPSRFDEAEQLWVWQYESEDGKHDMFMDLGEQIRFRVVGEAFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+TSP P + A + + +PYS
Sbjct: 159 DTSP-GGP---EAAEKPDAEERHVPYS 181
>gi|383853112|ref|XP_003702068.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Megachile rotundata]
Length = 183
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
+TLGFFEDI+IPP LQ PSRFD+ EQ WVWE+D +G+KHDLFMD G+ I+FRV SE F
Sbjct: 78 LTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETF 137
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
TE P + SE PY+ G
Sbjct: 138 TEALPTGPNMSGENVEKSESKNTS-PYTLG 166
>gi|345311139|ref|XP_003429062.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC8-like, partial [Ornithorhynchus anatinus]
Length = 190
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 85 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDENFV 144
Query: 62 ETSP 65
+TSP
Sbjct: 145 DTSP 148
>gi|148672600|gb|EDL04547.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_a
[Mus musculus]
Length = 148
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 43 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 102
Query: 62 ETSP 65
+TSP
Sbjct: 103 DTSP 106
>gi|194037190|ref|XP_001929172.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Sus scrofa]
Length = 175
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|426225830|ref|XP_004007064.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Ovis aries]
Length = 175
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|426225828|ref|XP_004007063.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Ovis aries]
Length = 204
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|194037188|ref|XP_001929168.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Sus scrofa]
Length = 204
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|354508066|ref|XP_003516074.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Cricetulus griseus]
Length = 117
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 29 VSLGFFDDILIPPESLQQPAKFDETEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 88
Query: 62 ETSP 65
+TSP
Sbjct: 89 DTSP 92
>gi|296486979|tpg|DAA29092.1| TPA: DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|440893626|gb|ELR46323.1| DNA-directed RNA polymerase III subunit RPC8 [Bos grunniens mutus]
Length = 204
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|357626904|gb|EHJ76803.1| putative RNA polymerase III polypeptide H [Danaus plexippus]
Length = 213
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 60/88 (68%), Gaps = 9/88 (10%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VT+GFF+DILIP LQ PSRFDE +Q WVWE+ E G+KHDLFMD G+ I+FRVTSE F
Sbjct: 99 VTMGFFDDILIPVNALQHPSRFDETDQAWVWEYPKEDGEKHDLFMDSGESIRFRVTSEEF 158
Query: 61 TETSPISCPDIHDGAPGSEVDTPKI-PY 87
E+ P G PGSE T + PY
Sbjct: 159 EESLP-------TGPPGSERPTQAVAPY 179
>gi|116004145|ref|NP_001070430.1| DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
III subunit H
gi|83405434|gb|AAI11228.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Bos
taurus]
Length = 204
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|390458879|ref|XP_002743853.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Callithrix
jacchus]
Length = 273
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+L FF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 168 VSLDFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 227
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSL 94
+TSP + P D SE ++P Y+L
Sbjct: 228 DTSP-TGPSSADATTSSE----ELPKKEAPYTL 255
>gi|149743080|ref|XP_001502576.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Equus caballus]
Length = 175
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FD+ EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 70 VSLGFFDDILIPPESLQQPAKFDDTEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 129
Query: 62 ETSP 65
+TSP
Sbjct: 130 DTSP 133
>gi|149743078|ref|XP_001502570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Equus caballus]
Length = 204
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FD+ EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDDTEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|449283297|gb|EMC89974.1| DNA-directed RNA polymerase III subunit RPC8 [Columba livia]
Length = 206
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 53/64 (82%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++GFF+DI+IPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSIGFFDDIVIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|47206295|emb|CAF93183.1| unnamed protein product [Tetraodon nigroviridis]
Length = 251
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 60/87 (68%), Gaps = 9/87 (10%)
Query: 2 VTLGFFEDILIPPEGLQQPSRF--DEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSEL 59
VT+GFF+DILIPPE LQQP++F DE EQVWVWE++ + HDL+MD G++I+FRVT E+
Sbjct: 99 VTMGFFDDILIPPESLQQPAKFRSDEAEQVWVWEYETDEGAHDLYMDQGEEIRFRVTDEV 158
Query: 60 FTETSPISCPDIHDGAPGSEVDTPKIP 86
F +TSP G +E D P
Sbjct: 159 FVDTSPT-------GPSAAETDAAAQP 178
>gi|74220193|dbj|BAE31279.1| unnamed protein product [Mus musculus]
Length = 204
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 52/64 (81%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETGEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|198421695|ref|XP_002128711.1| PREDICTED: similar to KIAA1665 protein isoform 2 [Ciona
intestinalis]
Length = 179
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQPS+FDE EQVWVWE++ + HDLFMD + I+ RV E FT
Sbjct: 73 VSLGFFDDILIPPESLQQPSKFDESEQVWVWEYETDEGTHDLFMDVNEPIRLRVVDETFT 132
Query: 62 ETSPI 66
+T+P+
Sbjct: 133 DTTPM 137
>gi|149630078|ref|XP_001520183.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Ornithorhynchus anatinus]
Length = 88
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 3 TLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTE 62
+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F +
Sbjct: 1 SLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDENFVD 60
Query: 63 TSP 65
TSP
Sbjct: 61 TSP 63
>gi|198421693|ref|XP_002128691.1| PREDICTED: similar to KIAA1665 protein isoform 1 [Ciona
intestinalis]
Length = 205
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQPS+FDE EQVWVWE++ + HDLFMD + I+ RV E FT
Sbjct: 99 VSLGFFDDILIPPESLQQPSKFDESEQVWVWEYETDEGTHDLFMDVNEPIRLRVVDETFT 158
Query: 62 ETSPI 66
+T+P+
Sbjct: 159 DTTPM 163
>gi|443730027|gb|ELU15722.1| hypothetical protein CAPTEDRAFT_156703 [Capitella teleta]
Length = 208
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 54/78 (69%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIP + +Q PSRFDE EQ+WVW++D HDLFMD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPSDAMQHPSRFDEAEQLWVWKYDTGEGSHDLFMDIGEEVRFRVVDETFV 158
Query: 62 ETSPISCPDIHDGAPGSE 79
+TSP G G+E
Sbjct: 159 DTSPTGPESSSSGVDGAE 176
>gi|118404162|ref|NP_001072397.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Xenopus
(Silurana) tropicalis]
gi|111306182|gb|AAI21598.1| hypothetical protein MGC147203 [Xenopus (Silurana) tropicalis]
Length = 207
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 52/64 (81%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DI+IPPE LQQP++FDE EQVWVWE++ E HDL+MD G+ I+FR+ E F
Sbjct: 99 VSLGFFDDIVIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDVGEDIRFRMVDETFI 158
Query: 62 ETSP 65
+TSP
Sbjct: 159 DTSP 162
>gi|156544678|ref|XP_001605231.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Nasonia vitripennis]
Length = 175
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDN-EGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IP LQ PSRFD+ EQVWVWE+D +GDKHDLFMD G+ I+FRV E F
Sbjct: 70 VTLGFFEDIVIPQHKLQYPSRFDQAEQVWVWEYDTGDGDKHDLFMDVGEIIRFRVVKETF 129
Query: 61 TET 63
TE+
Sbjct: 130 TES 132
>gi|444723804|gb|ELW64434.1| DNA-directed RNA polymerase III subunit RPC8 [Tupaia chinensis]
Length = 201
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 5 GFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETS 64
GFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F +TS
Sbjct: 99 GFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTS 158
Query: 65 P 65
P
Sbjct: 159 P 159
>gi|427786869|gb|JAA58886.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 198
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 54/64 (84%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++GFFEDIL+ P+G+Q P+RFDEKEQ+WVW ++ EG +DL+MD G++I+FRV E+F
Sbjct: 99 VSMGFFEDILVTPDGMQHPARFDEKEQLWVWLYEAEGKVNDLYMDLGEEIRFRVVGEVFV 158
Query: 62 ETSP 65
+T+P
Sbjct: 159 DTTP 162
>gi|321478047|gb|EFX89005.1| hypothetical protein DAPPUDRAFT_41099 [Daphnia pulex]
Length = 204
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF++I I E LQ+ SRFDE EQ WVWE+ +E KHDLFMD G++I+F+V +E F
Sbjct: 99 VSLGFFDEIFISSENLQKNSRFDETEQTWVWEYQSEDGKHDLFMDTGEEIRFKVVAEYFA 158
Query: 62 ETSPISCPDIHDGAPGSEVD 81
+T+P S P + AP S +D
Sbjct: 159 DTTP-SGP--SNEAPDSSLD 175
>gi|332022469|gb|EGI62776.1| DNA-directed RNA polymerase III subunit RPC8 [Acromyrmex
echinatior]
Length = 205
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PSRFD+ EQ WVW + E G HDLFMD G+ I+FR+ E+F
Sbjct: 99 VTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWIYKTEDGQTHDLFMDAGEVIRFRIVKEIF 158
Query: 61 TET 63
TE
Sbjct: 159 TEA 161
>gi|240848647|ref|NP_001155474.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)-like
[Acyrthosiphon pisum]
gi|239788882|dbj|BAH71098.1| ACYPI002394 [Acyrthosiphon pisum]
gi|239788884|dbj|BAH71099.1| ACYPI002394 [Acyrthosiphon pisum]
Length = 203
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++T GFFEDI +P +Q PSRFD K++VWVWE+DN GD +L MD G+ ++FRV SE F
Sbjct: 98 VLTTGFFEDIFVPAANMQNPSRFDTKDKVWVWEYDNCGDTVELHMDIGETVRFRVVSEQF 157
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPYS 88
+T P G +DT +I S
Sbjct: 158 VDTHP--------GVDSGLLDTGEIATS 177
>gi|156376407|ref|XP_001630352.1| predicted protein [Nematostella vectensis]
gi|156217371|gb|EDO38289.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-HDLFMDPGDKIKFRVTSELF 60
V++ FF+DI+IP E LQQPS+FDE EQVWVWE+ EGD+ H +FMD ++I+FRV E F
Sbjct: 99 VSMEFFDDIIIPYENLQQPSKFDEDEQVWVWEYTQEGDETHSMFMDVNEEIRFRVVDETF 158
Query: 61 TETSP 65
T+ +P
Sbjct: 159 TDVTP 163
>gi|307202151|gb|EFN81651.1| DNA-directed RNA polymerase III subunit RPC8 [Harpegnathos
saltator]
Length = 200
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDN-EGDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DI+IPP L PSRFD+++QVWVWE+ EG HDL++D + I+FRV +E+F
Sbjct: 99 VTLGFFDDIIIPPHKLPYPSRFDQRDQVWVWEYKTEEGSTHDLYVDLEELIRFRVVNEIF 158
Query: 61 TETSP 65
TE +P
Sbjct: 159 TEETP 163
>gi|307185496|gb|EFN71480.1| DNA-directed RNA polymerase III subunit RPC8 [Camponotus
floridanus]
Length = 204
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFFEDI+IPP LQ PS F++ +Q+W W + E G +H+L+M+ GD I+FRV E+F
Sbjct: 99 VTLGFFEDIIIPPHKLQHPSHFNQTQQMWFWVYKTEDGTEHNLYMETGDAIRFRVVEEIF 158
Query: 61 TET 63
ET
Sbjct: 159 AET 161
>gi|221113754|ref|XP_002163071.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Hydra
magnipapillata]
Length = 202
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DI IP E LQQ S+F + EQ+WVW+++ E HDL+MD ++I+ RV E F
Sbjct: 99 VSLGFFDDIFIPYEYLQQKSKFVDAEQLWVWQYETEEGSHDLYMDINEEIRIRVIDEEFL 158
Query: 62 ETSPIS-CPDIHDGAPGSEVDTPKIPYS 88
+ +P P +G S ++T K+PY+
Sbjct: 159 DLTPEGPAPPTIEGETKS-LETKKLPYT 185
>gi|340368576|ref|XP_003382827.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Amphimedon queenslandica]
Length = 199
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+++LI P+ + PSRFD+ EQ+WVW++DNE +D+ +D G I+F+V E F
Sbjct: 100 VSLGFFDNVLILPQSMPHPSRFDDDEQLWVWQYDNEDGTNDMIIDIGQDIRFKVIEEKFI 159
Query: 62 ETSP 65
+ SP
Sbjct: 160 DISP 163
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE---GDKHDLFMDPGDKIKFRVTSE 58
VTLGFF+DI +P E L PS ++ +E+ WVW +E G+ +LFMD G++I+F++ SE
Sbjct: 99 VTLGFFDDIFVPKEMLPDPSVYNAQERAWVWRVPSEETDGEPSELFMDVGEEIRFQIESE 158
Query: 59 LFTETSPISCPDIHDGAPGSEVDT-PKIPYS 88
F + SP S P + A ++V T + PYS
Sbjct: 159 HFIDISP-SRPSANSAAATTDVRTEAEAPYS 188
>gi|322790751|gb|EFZ15495.1| hypothetical protein SINV_12920 [Solenopsis invicta]
Length = 145
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMD 46
VTLGFFEDI+IPP LQ PS FD++EQVW+W++ ++G+ HDLFMD
Sbjct: 99 VTLGFFEDIVIPPHKLQHPSHFDQREQVWLWKYKTDDGETHDLFMD 144
>gi|226466694|emb|CAX69482.1| polymerase (RNA) III (DNA directed) polypeptide H [Schistosoma
japonicum]
Length = 212
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+L FF+DI IP E L+ PSR+D ++ W+WE+ EG+ +L +D D I+FRV E++
Sbjct: 99 VSLNFFDDIFIPAEKLRSPSRYDYEQNAWIWEYAYEGETAELRIDKHDTIRFRVVEEIWC 158
Query: 62 ETSP 65
+ +P
Sbjct: 159 DPNP 162
>gi|256088619|ref|XP_002580426.1| DNA-directed rna polymerase III 25 kD polypeptide [Schistosoma
mansoni]
gi|238666000|emb|CAZ36665.1| DNA-directed rna polymerase III 25 kD polypeptide, putative
[Schistosoma mansoni]
Length = 205
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+L FF+D+ IP E L+ PSR+D ++ W+WE+ EG+ +L +D D I+FRV E+++
Sbjct: 92 VSLNFFDDVFIPAEKLRSPSRYDYEQNAWIWEYAYEGETAELRIDKHDTIRFRVVEEVWS 151
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYSYG 90
+ +P + + + T P YG
Sbjct: 152 DPNP--------DSDKTNISTSNDPLEYG 172
>gi|393905506|gb|EJD73994.1| RNA polymerase Rpb7 domain-containing protein, variant [Loa loa]
Length = 207
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSEL 59
M+++ FFEDI IP L QPS F+E+EQ+W W++ E G L+MDPG ++FRV +
Sbjct: 80 MLSVIFFEDIFIPAHRLPQPSVFEEEEQIWYWDYQPEDGQSAKLYMDPGKTVRFRVIDNI 139
Query: 60 FTETSPISCPD 70
F + P S D
Sbjct: 140 FKDVDPNSSQD 150
>gi|312077201|ref|XP_003141199.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
gi|307763636|gb|EFO22870.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
Length = 225
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSEL 59
M+++ FFEDI IP L QPS F+E+EQ+W W++ E G L+MDPG ++FRV +
Sbjct: 98 MLSVIFFEDIFIPAHRLPQPSVFEEEEQIWYWDYQPEDGQSAKLYMDPGKTVRFRVIDNI 157
Query: 60 FTETSPISCPD 70
F + P S D
Sbjct: 158 FKDVDPNSSQD 168
>gi|170595314|ref|XP_001902331.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
gi|158590049|gb|EDP28820.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
Length = 220
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSEL 59
M+++ FFEDI IP L QPS F+E+EQ+W W++ E G L+MDPG ++FRV +
Sbjct: 98 MLSVIFFEDIFIPAHRLPQPSIFEEEEQIWYWDYQPEDGQSAKLYMDPGKTVRFRVIDNI 157
Query: 60 FTETSPISCPD 70
F + P S D
Sbjct: 158 FKDVDPNSNQD 168
>gi|328771829|gb|EGF81868.1| hypothetical protein BATDEDRAFT_86925 [Batrachochytrium
dendrobatidis JAM81]
Length = 212
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+T+ FF+DI+IPP L S +D E +WVW++ D++DLFMD + I+FRV +E F
Sbjct: 101 ITMNFFDDIIIPPSFLMPGSEYDTNEGLWVWKY----DENDLFMDREEPIRFRVENEAFV 156
Query: 62 ETSPISCPDIHDGAPGSEVDTP 83
+ P+ +I G G++ TP
Sbjct: 157 DVGPVK--EIKSGQIGNKTITP 176
>gi|425771830|gb|EKV10263.1| hypothetical protein PDIP_61090 [Penicillium digitatum Pd1]
gi|425777177|gb|EKV15361.1| hypothetical protein PDIG_26640 [Penicillium digitatum PHI26]
Length = 193
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DILIPP+ L + SRFD EQVW+WE +EG + F D G+ ++FRV SE +
Sbjct: 99 IGLEFFNDILIPPQMLMEKSRFDYAEQVWIWE--SEGGT-EFFFDVGEVVRFRVESEEWH 155
Query: 62 ETSPISCPDIHDGAP 76
+ P + PDI D P
Sbjct: 156 DQIP-NAPDIADETP 169
>gi|255953671|ref|XP_002567588.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589299|emb|CAP95439.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 185
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DILIPP+ L + SRFD EQVW+WE +EG + F D G+ ++FRV SE +
Sbjct: 91 IGLEFFNDILIPPQMLMEKSRFDYAEQVWIWE--SEGGT-EFFFDVGEVVRFRVESEEWH 147
Query: 62 ETSPISCPDIHDGAP 76
+ P + PD+ D P
Sbjct: 148 DQIP-NAPDVADETP 161
>gi|303279531|ref|XP_003059058.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458894|gb|EEH56190.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 711
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGD-KHDLFMDPGDKIKFRVTS 57
V+LGFF+D+ +P LQ PS FD+KE++WVWE+ +GD K + D +KI+ RV S
Sbjct: 100 VSLGFFDDVFVPAHLLQDPSNFDDKEKLWVWEY--QGDAKQKMHFDLEEKIRVRVQS 154
>gi|296422646|ref|XP_002840870.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637096|emb|CAZ85061.1| unnamed protein product [Tuber melanosporum]
Length = 194
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF+++ +P L + SRFD KEQVW+W D++ D +MD + I+FRV E+F
Sbjct: 98 VRTDFFDEVFVPAAALFEGSRFDGKEQVWIWRNDDQ----DFYMDKNEVIRFRVEGEVFV 153
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQL 101
+ P+ P G S + P + G+ S ++ +QL
Sbjct: 154 DQLPV--PPHLKGEESSLHNKPPYAITVGFSSALLMCSQL 191
>gi|391348227|ref|XP_003748350.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Metaseiulus occidentalis]
Length = 204
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-NEGDKHDLFMDPGDKIKFRVTSELF 60
++L FF+DI++ L PS +D + W+WE+ + G+ H+L ++ GD+++FRV E F
Sbjct: 103 ISLEFFDDIIVQGTRLPHPSHWDGAKGCWIWEYGADSGESHNLLLEVGDRVRFRVVDEKF 162
Query: 61 TETSPIS 67
T+ SP+
Sbjct: 163 TDCSPVG 169
>gi|325182910|emb|CCA17366.1| DNAdirected RNA polymerase III subunit RPC8 putative [Albugo
laibachii Nc14]
Length = 228
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+T+ F +DILIP LQ PS FD E++WVW F G+K MD ++++FRVT+ FT
Sbjct: 99 ITMEFMQDILIPSYALQTPSHFDTYERLWVWTFTESGEK--FHMDLNEEVRFRVTNVNFT 156
Query: 62 ETSPISCPDIHDGAPGSEVDT 82
+ +H A G + T
Sbjct: 157 Q--------VHKTAKGMQATT 169
>gi|17566938|ref|NP_505625.1| Protein RPC-25 [Caenorhabditis elegans]
gi|3881812|emb|CAA94858.1| Protein RPC-25 [Caenorhabditis elegans]
Length = 239
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK--HDLFMDPGDKIKFRVTSEL 59
+T+ FFEDI +P E L +P F+E+ QVW WE+ E + L+MDPG ++FRVT +
Sbjct: 99 LTIQFFEDIFVPAEKLPEPHVFEEEGQVWYWEYAQEDGEPPAKLYMDPGKIVRFRVTEII 158
Query: 60 FTETSP 65
F + P
Sbjct: 159 FKDLKP 164
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++++GFFEDI++P LQQPS+FDE E++WVW + ++++FMD ++++FRV L
Sbjct: 98 VLSMGFFEDIIVPHHQLQQPSKFDENEKLWVWNY----QENEMFMDLEEEVRFRV---LK 150
Query: 61 TETSPISCPDIHDGAP 76
PI D P
Sbjct: 151 VRYPPIPLEQERDAQP 166
>gi|405953228|gb|EKC20932.1| DNA-directed RNA polymerase III subunit RPC8 [Crassostrea gigas]
Length = 164
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 27 EQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSPISCPDIHDGAPG--SEVDTPK 84
EQ+W WE++ + KHDLFMD G++I+FRV E+F +T+P S PD P S+ ++ K
Sbjct: 41 EQLWAWEYETDDGKHDLFMDIGEEIRFRVVDEIFVDTTP-SGPDGTANQPSEISDTESKK 99
Query: 85 IPYS 88
PY+
Sbjct: 100 TPYT 103
>gi|296806184|ref|XP_002843902.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
gi|238845204|gb|EEQ34866.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
Length = 202
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DI++PP+ L +RFD K+QVW+W+ G+ + D G+ ++FRV E + + P
Sbjct: 110 FFNDIIVPPDLLLDGARFDMKDQVWIWD---NGEGGIFYFDVGETVRFRVEQEEWHDQVP 166
Query: 66 ISCPDIHDGAP 76
+ PD+HDG
Sbjct: 167 -TAPDLHDGVA 176
>gi|159469412|ref|XP_001692857.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158277659|gb|EDP03426.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 201
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++L FF+DILIP LQ PS +DE E++WVW+FD +D++MD + I+FRV S F
Sbjct: 99 ISLDFFDDILIPEHALQDPSFYDEAERLWVWKFDG----NDMYMDLQEPIRFRVHSVKFN 154
Query: 62 E 62
Sbjct: 155 S 155
>gi|302838430|ref|XP_002950773.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
gi|300263890|gb|EFJ48088.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
Length = 201
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF- 60
V+L FF+D+LIP LQ PS +DE E++WVW+FD +D++MD + I+FRV S F
Sbjct: 99 VSLDFFDDVLIPEHALQDPSFYDESERLWVWKFDG----NDMYMDLQEPIRFRVHSVKFN 154
Query: 61 TETSPISCPD 70
T +PI +
Sbjct: 155 TPPTPIQLQN 164
>gi|315046208|ref|XP_003172479.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
gi|311342865|gb|EFR02068.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
Length = 195
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ + FF DI++PP+ L +RFD K+QVW+W+ G+ + D G+ ++FRV E +
Sbjct: 99 IGIEFFNDIIVPPDMLLDGARFDMKDQVWIWD---NGEGGIFYFDVGETVRFRVEQEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P S PD+ DG + K PYS
Sbjct: 156 DQVP-SAPDLQDGVAAPD---RKPPYS 178
>gi|308804628|ref|XP_003079626.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
gi|116058082|emb|CAL53271.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
Length = 213
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
V++GFF+D+ IPP +Q PS +DE E+ W+W+++ E K ++ G+K++FRV F
Sbjct: 109 VSIGFFDDVFIPPSNMQDPSEWDEDEKAWIWDYNGERIK----LEVGEKVRFRVVGSRF 163
>gi|67521980|ref|XP_659051.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|40745421|gb|EAA64577.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|259486758|tpe|CBF84875.1| TPA: DNA-directed RNA polymerase III subunit 22.9 kDa, putative
(AFU_orthologue; AFUA_8G04350) [Aspergillus nidulans
FGSC A4]
Length = 208
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DIL+PP+ L +RFD ++QVW+WE + EG + D G+ ++FRV E + + P
Sbjct: 103 FFNDILVPPDLLLDGARFDYQDQVWIWE-NEEG---TFYFDVGEVVRFRVEMEEWHDQIP 158
Query: 66 ISCPDIHDGAP 76
+ PD+ DGAP
Sbjct: 159 -NAPDLGDGAP 168
>gi|326472028|gb|EGD96037.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
Length = 195
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DI++PP+ L +RFD K+QVW+W+ G+ + D G+ ++FRV E + + P
Sbjct: 103 FFNDIIVPPDLLLDGARFDMKDQVWIWD---NGEGGIFYFDVGETVRFRVEQEEWHDQVP 159
Query: 66 ISCPDIHDG 74
S PD+ DG
Sbjct: 160 -SAPDLQDG 167
>gi|326477107|gb|EGE01117.1| DNA-directed RNA polymerase III polypeptide [Trichophyton equinum
CBS 127.97]
Length = 195
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DI++PP+ L +RFD K+QVW+W+ G+ + D G+ ++FRV E + + P
Sbjct: 103 FFNDIIVPPDLLLDGARFDMKDQVWIWD---NGEGGIFYFDVGETVRFRVEQEEWHDQVP 159
Query: 66 ISCPDIHDG 74
S PD+ DG
Sbjct: 160 -SAPDLQDG 167
>gi|320040236|gb|EFW22169.1| DNA-directed RNA polymerase III polypeptide [Coccidioides posadasii
str. Silveira]
Length = 195
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DILIPP L ++FD +QVWVW+ G+ + D G+ ++FRV +E +
Sbjct: 99 IGLEFFNDILIPPSLLLDGAKFDYTDQVWVWD---NGEGATFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P + PD+ DG+ E K PYS
Sbjct: 156 DQIP-NAPDMPDGSSAVE---RKPPYS 178
>gi|119484158|ref|XP_001261982.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
gi|119410138|gb|EAW20085.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
Length = 201
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DILIPP+ L +RFD +QVWVWE NE D + D G+ ++FRV E + + P
Sbjct: 111 FFNDILIPPDLLLDGARFDIADQVWVWE--NE-DGSTFYFDIGEIVRFRVEMEEWHDQIP 167
Query: 66 ISCPDIHDGA 75
+ PD+ DGA
Sbjct: 168 -NAPDLGDGA 176
>gi|303321536|ref|XP_003070762.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240110459|gb|EER28617.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 144
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DILIPP L ++FD +QVWVW+ G+ + D G+ ++FRV +E +
Sbjct: 48 IGLEFFNDILIPPSLLLDGAKFDYTDQVWVWD---NGEGATFYFDIGETVRFRVEAEEWH 104
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P + PD+ DG+ E K PYS
Sbjct: 105 DQIP-NAPDMPDGSSAVE---RKPPYS 127
>gi|258575615|ref|XP_002541989.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902255|gb|EEP76656.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 176
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF DILIPP L +RFD +QVWVW+ G+ + D G+ ++FRV +E +
Sbjct: 81 VGLEFFSDILIPPSLLLDGARFDYTDQVWVWD---NGEGSTFYFDIGETVRFRVEAEEWH 137
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P + PD D S V K PYS
Sbjct: 138 DQIP-NAPDTPD---TSTVGERKAPYS 160
>gi|327305103|ref|XP_003237243.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326460241|gb|EGD85694.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 196
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DI++PP+ L +RFD K+QVW+W+ G+ + D G+ ++FRV E + + P
Sbjct: 104 FFNDIIVPPDLLLDGARFDMKDQVWIWD---NGEGGIFYFDVGETVRFRVEQEEWHDQVP 160
Query: 66 ISCPDIHDG 74
S PD+ DG
Sbjct: 161 -SGPDLQDG 168
>gi|392862351|gb|EAS37009.2| DNA-directed RNA polymerase, partial [Coccidioides immitis RS]
Length = 195
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DILIPP L ++FD +QVWVW+ G+ + D G+ ++FRV +E +
Sbjct: 99 IGLEFFNDILIPPSLLLDGAKFDYTDQVWVWD---NGEGATFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSE 79
+ P + PD+ DG+ E
Sbjct: 156 DQIP-NAPDMPDGSSAVE 172
>gi|121719683|ref|XP_001276540.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
gi|119404752|gb|EAW15114.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
Length = 216
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DIL+PP+ L +RFD +QVWVWE NE D + D G+ ++FRV E + + P
Sbjct: 126 FFNDILVPPDLLLDGARFDIADQVWVWE--NE-DGSTFYFDIGEVVRFRVEMEEWHDQIP 182
Query: 66 ISCPDIHDGAP 76
+ PD+ DGA
Sbjct: 183 -NAPDLGDGAA 192
>gi|154283489|ref|XP_001542540.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410720|gb|EDN06108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 693
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+++ FF DI IPP L +RFD +QVW+W+ G+ + D G+ ++FRV +E +
Sbjct: 99 ISVEFFNDIFIPPSLLLDGARFDFADQVWIWD---NGEGAIFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P PD DG E K PYS
Sbjct: 156 DQVP-DAPDDQDGMAVME---RKPPYS 178
>gi|119195677|ref|XP_001248442.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 164
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DILIPP L ++FD +QVWVW+ G+ + D G+ ++FRV +E +
Sbjct: 68 IGLEFFNDILIPPSLLLDGAKFDYTDQVWVWD---NGEGATFYFDIGETVRFRVEAEEWH 124
Query: 62 ETSPISCPDIHDGAPGSE 79
+ P + PD+ DG+ E
Sbjct: 125 DQIP-NAPDMPDGSSAVE 141
>gi|341899564|gb|EGT55499.1| hypothetical protein CAEBREN_06283 [Caenorhabditis brenneri]
Length = 214
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGD-KHDLFMDPGDKIKFRVTSELF 60
+++ FFEDI +P E L +P F+E+ QVW WE E + L+MDPG ++FR T +F
Sbjct: 99 LSIEFFEDIFVPAEKLPEPHVFEEEGQVWYWEVAQEDEPPAKLYMDPGKIVRFRTTEIIF 158
Query: 61 TETSP 65
+ P
Sbjct: 159 KDLKP 163
>gi|452819811|gb|EME26863.1| DNA-directed RNA polymerase III subunit C25 isoform 2 [Galdieria
sulphuraria]
Length = 179
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++ FF +I I LQ+PS FDE+EQVW+W++ HDL +D G+ I+FRV ++
Sbjct: 99 VSVDFFNNIFIDRLALQEPSVFDEEEQVWIWKYQG----HDLHIDVGEDIRFRVVKVVYE 154
Query: 62 ET 63
+
Sbjct: 155 NS 156
>gi|339238867|ref|XP_003380988.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
gi|316976048|gb|EFV59393.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
Length = 202
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 9 DILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTE 62
DI IP E L QPS+F + EQ+W W+++ + +LF++PG K++FRV E+F +
Sbjct: 111 DIFIPREYLPQPSKFLQNEQIWSWQYEVDDGFAELFLEPGSKVRFRVIDEVFKD 164
>gi|195998784|ref|XP_002109260.1| hypothetical protein TRIADDRAFT_53108 [Trichoplax adhaerens]
gi|190587384|gb|EDV27426.1| hypothetical protein TRIADDRAFT_53108 [Trichoplax adhaerens]
Length = 160
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 16 GLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSPISCPDIHDGA 75
G R D +EQ+W+WE+ E HDLFMD +++FRV +F +++P+S +
Sbjct: 70 GYPAEDRSDYEEQLWLWEYQTENRIHDLFMDVNKEVRFRVVDHIFADSAPVSDTAQKEDN 129
Query: 76 PGSEVDTPKIPYS 88
D K PY+
Sbjct: 130 ENESYDCSKSPYT 142
>gi|255730589|ref|XP_002550219.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132176|gb|EER31734.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 197
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF++I IP E L + RF E EQ W++ D+++LF+D +KI+FRV E+F
Sbjct: 99 VRLEFFDEIWIPKEFLFENCRFSESEQAWIYSL----DENELFIDINEKIRFRVEEEIFY 154
Query: 62 ETSPISCPDIHD 73
P + DI +
Sbjct: 155 NVKPKTNSDIEE 166
>gi|326428134|gb|EGD73704.1| hypothetical protein PTSG_05411 [Salpingoeca sp. ATCC 50818]
Length = 203
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 2 VTLG-FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
V+LG FF+D++IPP+ L+ S FDE +Q W+W + + HDL D+I F V E+F
Sbjct: 100 VSLGTFFDDVVIPPDKLRPGSFFDEAKQTWIWRYSADDAVHDLEYSLEDEIYFMVDEEIF 159
Query: 61 TETSPISCPDIHDGAPGSEVDTPKIPY 87
T+ P + + E ++PY
Sbjct: 160 TDIPPRT--RLESKKAAEETAAQQVPY 184
>gi|308500610|ref|XP_003112490.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
gi|308267058|gb|EFP11011.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
Length = 234
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GD-KHDLFMDPGDKIKFRVTSEL 59
+++ FFEDI +P E L +P F+E QVW WE+ E GD L+MDPG +++R T +
Sbjct: 115 LSIEFFEDIFVPAEKLPEPHVFEEDGQVWYWEYAQEDGDPPAKLYMDPGKIVRYRTTEII 174
Query: 60 FTETSP 65
F + P
Sbjct: 175 FKDLKP 180
>gi|452819810|gb|EME26862.1| DNA-directed RNA polymerase III subunit C25 isoform 1 [Galdieria
sulphuraria]
Length = 185
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++ FF +I I LQ+PS FDE+EQVW+W++ HDL +D G+ I+FRV ++
Sbjct: 99 VSVDFFNNIFIDRLALQEPSVFDEEEQVWIWKYQG----HDLHIDVGEDIRFRVVKVVYE 154
Query: 62 ET 63
+
Sbjct: 155 NS 156
>gi|358372760|dbj|GAA89362.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
kawachii IFO 4308]
Length = 193
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF DIL+PP+ L +RFD +QVW+WE NE D + D G+ ++FRV E +
Sbjct: 99 VAVEFFNDILVPPDLLLDGARFDYADQVWIWE--NE-DGSTFYFDVGEVVRFRVEMEEWH 155
Query: 62 ETSPISCPDIHDGAP 76
+ P + PD+ D A
Sbjct: 156 DQIP-NAPDLGDAAA 169
>gi|145253312|ref|XP_001398169.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus niger CBS
513.88]
gi|134083732|emb|CAK42970.1| unnamed protein product [Aspergillus niger]
gi|350633207|gb|EHA21573.1| hypothetical protein ASPNIDRAFT_51264 [Aspergillus niger ATCC 1015]
Length = 193
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF DIL+PP+ L +RFD +QVW+WE NE D + D G+ ++FRV E +
Sbjct: 99 VAVEFFNDILVPPDLLLDGARFDYADQVWIWE--NE-DGSTFYFDVGEVVRFRVEMEEWH 155
Query: 62 ETSPISCPDIHDGAP 76
+ P + PD+ D A
Sbjct: 156 DQIP-NAPDLGDAAA 169
>gi|342905869|gb|AEL79218.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Rhodnius
prolixus]
Length = 130
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 26/32 (81%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWE 33
VTLGFF+DI IP LQ PSRFDE EQVW+WE
Sbjct: 99 VTLGFFDDIFIPESCLQHPSRFDESEQVWIWE 130
>gi|301090703|ref|XP_002895556.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
gi|262097819|gb|EEY55871.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
Length = 228
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++ F +DI+IP LQ PS FD E++WVW++ +EG + +MD ++I+FRVT+ FT
Sbjct: 99 VSMDFVQDIIIPSYALQTPSYFDTAERLWVWKY-SEG-QEKFYMDLHEEIRFRVTNINFT 156
Query: 62 ETSPIS 67
+ +
Sbjct: 157 RVTKTA 162
>gi|167998266|ref|XP_001751839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696937|gb|EDQ83274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 189
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 5/56 (8%)
Query: 2 VTLG-FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
++LG FFEDI IP LQQPS+FDE+E++W+W ++ D+FMD + ++FRV
Sbjct: 99 LSLGSFFEDIHIPEHLLQQPSKFDEEEKLWIWNYNGA----DMFMDLEEDVRFRVV 150
>gi|115491011|ref|XP_001210133.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
gi|114196993|gb|EAU38693.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
Length = 206
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF DIL+PP L +RFD +QVW+WE NE D + D G+ ++ RV E +
Sbjct: 115 VGVEFFNDILVPPNLLLDGARFDYADQVWIWE--NE-DGSTFYFDVGEIVRLRVEMEEWH 171
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P + PD+ DGA K PYS
Sbjct: 172 DQIP-NAPDLGDGATSER----KPPYS 193
>gi|70983430|ref|XP_747242.1| DNA-directed RNA polymerase III subunit 22.9 kDa [Aspergillus
fumigatus Af293]
gi|66844868|gb|EAL85204.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus fumigatus Af293]
gi|159123752|gb|EDP48871.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus fumigatus A1163]
Length = 112
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF DILIPP+ L +RFD +QVWVWE NE D + D G+ ++FRV E +
Sbjct: 18 VGVEFFNDILIPPDLLLDGARFDIADQVWVWE--NE-DGSTFYFDIGEIVRFRVEMEEWH 74
Query: 62 ETSPISCPDIHDG 74
+ P + PD+ DG
Sbjct: 75 DQIP-NAPDLGDG 86
>gi|348687463|gb|EGZ27277.1| hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae]
Length = 228
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++ F +DI+IP LQ PS FD E++WVW++ +EG + +MD ++I+FRVT+ FT
Sbjct: 99 VSMDFVQDIIIPSYALQTPSYFDTAERLWVWKY-SEG-QEKFYMDLHEEIRFRVTNINFT 156
Query: 62 ETSPIS 67
+ +
Sbjct: 157 RVTKTA 162
>gi|145347797|ref|XP_001418348.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578577|gb|ABO96641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 208
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V++GFF+DI +PP +Q PS +D+ +VW+W++D E + M G++ +F+V + F
Sbjct: 101 VSIGFFKDIFVPPTNMQAPSEYDDDSKVWMWDYDGE----LMEMKVGERFRFKVVAVRFP 156
Query: 62 ET 63
E+
Sbjct: 157 ES 158
>gi|164656000|ref|XP_001729128.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
gi|159103018|gb|EDP41914.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
Length = 232
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKH-----------DLFMDPGDK 50
+++GFF+DI IPP L PS FD +EQ W W D + H +++D G+
Sbjct: 99 ISVGFFDDIFIPPHFLPTPSAFDYQEQAWFWLLDPASEAHVADPLLSAQEERMYLDIGEV 158
Query: 51 IKFRVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYSY 89
I+F + S+ F + P P + +G G +TP + ++
Sbjct: 159 IRFAIESDSFYDLEP--GPSLGEGMLG---ETPAVTSNF 192
>gi|167535085|ref|XP_001749217.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772370|gb|EDQ86023.1| predicted protein [Monosiga brevicollis MX1]
Length = 1167
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEF-DNEGDKHDLFMDPGDKIKFRVTSELF 60
V+L FF DI IP +++ FD+ Q W+W++ D +G H L + G +I F+V E F
Sbjct: 99 VSLKFFRDIYIPAHAMREGVVFDDGLQEWIWQYQDEDGASHQLKLAKGCEITFKVMEETF 158
Query: 61 TETSPIS 67
+ P+S
Sbjct: 159 HDVIPVS 165
>gi|260943680|ref|XP_002616138.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC 42720]
gi|238849787|gb|EEQ39251.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC 42720]
Length = 196
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V +GFF+DI IP + + + F E+ WVW+ D E L++D +KI+FRV E+F
Sbjct: 99 VRMGFFDDIFIPKDYIFESCTFSPAEKAWVWQMDEE---TKLYIDVNEKIRFRVEEEVFV 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIP 86
P + + A G E T K P
Sbjct: 156 NVKPKTSSE----ALGLEEQTNKAP 176
>gi|261197898|ref|XP_002625351.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595314|gb|EEQ77895.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607836|gb|EEQ84823.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327355776|gb|EGE84633.1| DNA-directed RNA polymerase III subunit polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 195
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++L FF DI IPP L +RFD +QVW+W+ G+ + D G+ ++FRV +E +
Sbjct: 99 ISLEFFNDIFIPPSLLLDGARFDFADQVWIWD---NGEGAIFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ PD D G V K PYS
Sbjct: 156 D----QIPDAPDDQEGGAVMERKPPYS 178
>gi|169784414|ref|XP_001826668.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus oryzae
RIB40]
gi|238508450|ref|XP_002385418.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|83775415|dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688937|gb|EED45289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|391864250|gb|EIT73546.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 193
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DIL+PP L +RFD +QVW+WE NE D + D G+ ++FRV E + + P
Sbjct: 103 FFNDILVPPNLLLDGARFDYADQVWIWE--NE-DGSTFYFDIGEVVRFRVEIEEWHDQIP 159
Query: 66 ISCPDIHDGAP 76
+ PD+ D A
Sbjct: 160 -NAPDLGDAAA 169
>gi|50550449|ref|XP_502697.1| YALI0D11396p [Yarrowia lipolytica]
gi|49648565|emb|CAG80885.1| YALI0D11396p [Yarrowia lipolytica CLIB122]
Length = 202
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF+DI IP L + S+F +EQ W+W D E +LF+D +KI+FR+ E F
Sbjct: 99 VKMEFFDDIFIPAHLLFENSQFVAREQAWMWCPDEE---QELFLDTNEKIRFRIEQEKFQ 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPK 84
+ P+ AP E D K
Sbjct: 156 DLPPLKQGYAGSAAPNDEQDPEK 178
>gi|225561861|gb|EEH10141.1| DNA-directed RNA polymerase III 25 kD polypeptide [Ajellomyces
capsulatus G186AR]
Length = 195
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+++ FF DI IPP L +RFD +QVW+W+ G+ + D G+ ++FRV +E +
Sbjct: 99 ISVEFFNDIFIPPSLLLDGARFDFADQVWIWD---NGEGAIFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P PD DG E K PYS
Sbjct: 156 DQVP-DAPDDQDGVAVME---RKPPYS 178
>gi|240275469|gb|EER38983.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 202
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+++ FF DI IPP L +RFD +QVW+W+ G+ + D G+ ++FRV +E +
Sbjct: 99 ISVEFFNDIFIPPSLLLDGARFDFADQVWIWD---NGEGAIFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P PD DG V K PYS
Sbjct: 156 DQVP-DAPDDQDGVA---VMDRKPPYS 178
>gi|325091306|gb|EGC44616.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 195
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+++ FF DI IPP L +RFD +QVW+W+ G+ + D G+ ++FRV +E +
Sbjct: 99 ISVEFFNDIFIPPSLLLDGARFDFADQVWIWD---NGEGAIFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P PD DG V K PYS
Sbjct: 156 DQVP-DAPDDQDGVA---VMDRKPPYS 178
>gi|295665246|ref|XP_002793174.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225679219|gb|EEH17503.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226278088|gb|EEH33654.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226290932|gb|EEH46360.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides brasiliensis Pb18]
Length = 195
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+++ FF DI IPP L +RFD +QVW+W+ G+ + D G+ ++FRV +E +
Sbjct: 99 ISVEFFNDIFIPPSLLLDGARFDFTDQVWIWD---NGEGAVFYFDIGETVRFRVEAEEWH 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ PD D G V K PYS
Sbjct: 156 DL----VPDGPDAQQGESVVEKKPPYS 178
>gi|50309129|ref|XP_454570.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643705|emb|CAG99657.1| KLLA0E13751p [Kluyveromyces lactis]
Length = 210
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG FEDI +P L + S F KE W+W D D+ L+ D +KI+FRV E+F +
Sbjct: 102 LGLFEDIFVPQNMLFEGSYFSPKENAWIWPMD---DETKLYFDVNEKIRFRVEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|345566306|gb|EGX49249.1| hypothetical protein AOL_s00078g282 [Arthrobotrys oligospora ATCC
24927]
Length = 194
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF+++ +P + L + S FD EQVWVW + D +LF D + ++FRV E F
Sbjct: 99 VRFDFFDEVFLPKDYLFEGSVFDHNEQVWVWRTE---DGDELFFDKNESVRFRVEEEEFI 155
Query: 62 ETSPISCPDIHDGAPGSEVDTP 83
+ +P+ P + D +++ P
Sbjct: 156 DNTPVD-PALRDSLADADMKPP 176
>gi|422294115|gb|EKU21415.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 220
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEF--DNEGDKHDLF-MDPGDKIKFRVTSE 58
++LGFF+DI +P LQ PS FD +E VWVW + D G+ + M+ + I+FRV S
Sbjct: 74 ISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSV 133
Query: 59 LFTET 63
FT T
Sbjct: 134 NFTHT 138
>gi|387219567|gb|AFJ69492.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 206
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEF--DNEGDKHDLF-MDPGDKIKFRVTSE 58
++LGFF+DI +P LQ PS FD +E VWVW + D G+ + M+ + I+FRV S
Sbjct: 60 ISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSV 119
Query: 59 LFTET 63
FT T
Sbjct: 120 NFTHT 124
>gi|448519252|ref|XP_003868045.1| Rpc25 protein [Candida orthopsilosis Co 90-125]
gi|380352384|emb|CCG22610.1| Rpc25 protein [Candida orthopsilosis]
Length = 195
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF+DI IP + L + + E E WVW N D DLF+D +KI+F+V E+F
Sbjct: 99 VRLEFFDDIWIPADYLFEDCEYRESESAWVW---NSADT-DLFIDVDEKIRFKVEKEVFY 154
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIP 86
P S + A G E T K+P
Sbjct: 155 NVKPKS----SNEAIGIEEPTNKLP 175
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P E L Q + ++ EQ+W+W FD E LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFVPYEELPQGAEYNHSEQIWIWNFDEE----RLFYDNHEMVRFQVIDEEWHDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
P + DTP K PY
Sbjct: 159 --------AGPTAAEDTPAKTPY 173
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI IP E L Q + ++ EQ+W+W FD E LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFIPYEELPQGAEYNHSEQIWIWNFDEE----RLFYDNHEMVRFQVIDEEWHDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
P DTP K PY
Sbjct: 159 --------AGPTQAEDTPAKTPY 173
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P E L Q + ++ EQ+W+W FD E LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFVPYEELPQGAEYNHSEQIWIWNFDEE----RLFYDNHEMVRFQVIDEEWHDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
+ P DTP K PY
Sbjct: 159 V--------GPTQAEDTPAKTPY 173
>gi|385302410|gb|EIF46542.1| rna polymerase iii subunit required for transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 189
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF DI IP L + S + K+ WVW+ D E + L++D ++I FRV E+F
Sbjct: 83 VNMEFFNDIFIPKSLLFENSLYSPKDNAWVWQMDEE---NKLYLDVNERINFRVEEEVFN 139
Query: 62 ETSP 65
+ P
Sbjct: 140 DVRP 143
>gi|45185736|ref|NP_983452.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|44981491|gb|AAS51276.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|374106658|gb|AEY95567.1| FACR049Wp [Ashbya gossypii FDAG1]
Length = 210
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP + L + S + + WVW+ D E L+ D +KI+FRV E+F +
Sbjct: 102 LGMFDDIFIPAKMLFEGSYYSVDDSAWVWQMDEE---TKLYFDVNEKIRFRVEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|66362138|ref|XP_628033.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
gi|46227635|gb|EAK88570.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
Length = 209
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF DI IP L++P D ++W W+++N H L I+F+V+S +F
Sbjct: 125 VSLGFFSDIKIPCNDLREPKSIDSNTKIWSWDYEN----HKLCYLIDSTIRFKVSSVVFN 180
Query: 62 ETSPISCPDIHDGAPGSEV 80
+ S HD + S V
Sbjct: 181 DQS-------HDNSVSSMV 192
>gi|354544030|emb|CCE40752.1| hypothetical protein CPAR2_107870 [Candida parapsilosis]
Length = 195
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF+DI IP + L + F E E WVW N D +LF+D +KI+F+V E+F
Sbjct: 99 VRLEFFDDIWIPADYLFEDCEFKESESAWVW---NSADT-ELFIDVDEKIRFKVEKEVFY 154
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIP 86
P S + A G E K+P
Sbjct: 155 NVKPKS----SNEAIGIEEPANKVP 175
>gi|67607603|ref|XP_666822.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657887|gb|EAL36594.1| hypothetical protein Chro.10225 [Cryptosporidium hominis]
Length = 200
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF DI IP L++P D ++W W+++N H L I+F+V+S +F
Sbjct: 116 VSLGFFSDIKIPCNDLREPKSIDSNTKIWSWDYEN----HKLCYLIDSTIRFKVSSVVFN 171
Query: 62 ETS 64
E S
Sbjct: 172 EQS 174
>gi|19112860|ref|NP_596068.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe 972h-]
gi|74582844|sp|O94285.1|RPC8_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName: Full=RNA
polymerase III subunit C25
gi|339961228|pdb|3AYH|B Chain B, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
RNA Polymerase Iii
gi|3850072|emb|CAA21883.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe]
gi|76782157|gb|ABA54849.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces pombe]
Length = 203
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE--GDKHDLFMDPGDKIKFRVTSEL 59
VT+ FF+DI IP + L P F E+ WVW+ + E + +L+ D ++I+F++ SE
Sbjct: 99 VTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158
Query: 60 FTETSP 65
F + SP
Sbjct: 159 FVDISP 164
>gi|255073311|ref|XP_002500330.1| predicted protein [Micromonas sp. RCC299]
gi|226515593|gb|ACO61588.1| predicted protein [Micromonas sp. RCC299]
Length = 201
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRV 55
V +GFF DI +P +Q+PS FDE EQ+WVW +++ +FMD + ++ R+
Sbjct: 100 VDIGFFSDIFVPEHLMQEPSVFDEDEQLWVWMYED----AKMFMDLEEPVRIRI 149
>gi|254574134|ref|XP_002494176.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|238033975|emb|CAY71997.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|328354004|emb|CCA40401.1| DNA-directed RNA polymerase III subunit C25 [Komagataella pastoris
CBS 7435]
Length = 200
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
VT+ FFEDI IP L + + + E W+W+ D D L++D +KI FR+ E+FT
Sbjct: 99 VTMEFFEDIFIPKSLLFENAVYSGDEDAWIWKPD---DDTSLYLDENEKIYFRIEEEVFT 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPVRF 107
+ P + + E + K+P Y +A +T+ + V +
Sbjct: 156 DIKPKGPDNSMNVTEEKESEENKVP---PYAIIASCQTEGMGCVSW 198
>gi|344304860|gb|EGW35092.1| subunit of RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 196
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF++I IP L + F E+ WVW+ D E +LF+D +KI+FRV E+F
Sbjct: 99 IRLEFFDEIFIPRAYLFEGCEFKPVEKAWVWKPDEE---TELFIDINEKIRFRVEQEIFV 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPVRF 107
P S + A G E T K P Y +A +T+ + V +
Sbjct: 156 NIKPKS----SNEAVGLEEPTNKAP---PYAIMASCQTEGMGCVSW 194
>gi|47189269|emb|CAF87239.1| unnamed protein product [Tetraodon nigroviridis]
Length = 119
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 25/27 (92%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQ 28
VT+GFF+DILIPPE LQQP++FDE EQ
Sbjct: 63 VTMGFFDDILIPPESLQQPAKFDEAEQ 89
>gi|367007176|ref|XP_003688318.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
gi|357526626|emb|CCE65884.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
Length = 205
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 5 GFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETS 64
G FEDI IP L + F E WVW D + +L+ D +KI+FRV E+F +
Sbjct: 103 GMFEDIFIPKNMLFEGCHFSVNENAWVWPMDED---TELYFDINEKIRFRVEQEVFIDVK 159
Query: 65 PIS 67
P S
Sbjct: 160 PKS 162
>gi|320580456|gb|EFW94678.1| RNA polymerase III subunit C25 [Ogataea parapolymorpha DL-1]
Length = 206
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF DI IP + + S + + W+W+ D E L++D +KI FR+ E+F
Sbjct: 99 VNMNFFNDIFIPKNYMFEGSYYSADDNAWIWQMDEE---TKLYLDINEKINFRIEKEVFN 155
Query: 62 ETSP------ISCPDIHDGAPGSEVDTPKIP 86
+ P ++ D G + + K+P
Sbjct: 156 DVRPKGPDNSLTSLTADDQTNGVDTEDRKVP 186
>gi|406607743|emb|CCH40848.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 206
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ + FF+DI IP L + F + W+W D L++D +KI+FRV E+F
Sbjct: 99 IKMAFFDDIFIPKAALFEGCEFSLNDNAWIW----NADGAQLYLDVNEKIRFRVEQEIFR 154
Query: 62 ETSP 65
P
Sbjct: 155 NVKP 158
>gi|254577683|ref|XP_002494828.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
gi|238937717|emb|CAR25895.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
Length = 209
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F DI IP L + + E W+W D + + L+ D +KI+FRV E+F +
Sbjct: 102 LGLFNDIFIPQNMLFEGCSYSPDENAWIWPMD---ESNQLYFDVNEKIRFRVEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|443898780|dbj|GAC76114.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 326
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-----------HDLFMDPGDK 50
+T+GFF+DI +P + +P FD +E+ W W ++ D+ +++D ++
Sbjct: 183 ITMGFFDDIYVPAHLIPKPCAFDHQERAWFWLYEARTDEIAADPLLSHPDERMYLDTAEQ 242
Query: 51 IKFRVTSELF--TETSPISCP 69
++F + S+ F E PI+ P
Sbjct: 243 VRFTIESDEFWDAEPGPIANP 263
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEK-----EQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
++LGFF+DI IP L +PS + + +W+WEF +E +K + +D D+IKFRV
Sbjct: 99 LSLGFFDDIYIPSHRLPKPSYSQQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVD 158
Query: 57 S 57
S
Sbjct: 159 S 159
>gi|259147697|emb|CAY80947.1| Rpc25p [Saccharomyces cerevisiae EC1118]
Length = 212
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E VW+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESVWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|156063178|ref|XP_001597511.1| hypothetical protein SS1G_01705 [Sclerotinia sclerotiorum 1980]
gi|154697041|gb|EDN96779.1| hypothetical protein SS1G_01705 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 172
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF++I +P + L S FD EQV+VW+ + D LF D + ++FRV SE +
Sbjct: 75 VRTHFFDEIFVPAKMLPDGSHFDHNEQVFVWQTE---DGTQLFFDNQETVRFRVDSEQWN 131
Query: 62 ETSPISCPDIHDGAPGSEV 80
+ +P+ PD D S V
Sbjct: 132 DQAPLG-PDKQDENEESRV 149
>gi|212541336|ref|XP_002150823.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
gi|210068122|gb|EEA22214.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
Length = 194
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ L FF DI +P L SRFD E +W+W E ++ + D G+ ++FRV SE +
Sbjct: 99 INLEFFGDITVPAALLFDGSRFDLAENIWIW----ETGENTYYYDIGEIVRFRVESEEWH 154
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P + PD + SE K PYS
Sbjct: 155 DQRP-TGPDRVEAQTASE---NKPPYS 177
>gi|448090378|ref|XP_004197055.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|448094779|ref|XP_004198086.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359378477|emb|CCE84736.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359379508|emb|CCE83705.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
Length = 195
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V LGFF+DI +P + F E+ WVW D D+ +L++D +KI+FR+ E+F
Sbjct: 99 VRLGFFDDIFVPRNYFFENCEFKPTEKAWVWRPD---DETELYIDVNEKIRFRIEEEVFV 155
Query: 62 ETS 64
Sbjct: 156 NVK 158
>gi|42571371|ref|NP_973776.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|332189916|gb|AEE28037.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 189
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 2 VTLGFFEDILIPPEGLQQPSR-----FDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
+TLGFF+DI +P + +P+R ++ K+ +WVWE+ K D +D +IKFRV
Sbjct: 99 LTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP--KEDYIVDDACQIKFRVE 156
Query: 57 S 57
S
Sbjct: 157 S 157
>gi|302506791|ref|XP_003015352.1| hypothetical protein ARB_06475 [Arthroderma benhamiae CBS 112371]
gi|291178924|gb|EFE34712.1| hypothetical protein ARB_06475 [Arthroderma benhamiae CBS 112371]
Length = 219
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 30/112 (26%)
Query: 6 FFEDILIPPEGLQQPSRF------------------DEKEQVWVWEFDNEGDKHDLFMDP 47
FF DI++PP+ L +R D K+QVW+W+ G+ + D
Sbjct: 107 FFNDIIVPPDLLLDGARLYVFLQLLYDCPLLIIVDSDMKDQVWIWD---NGEGGIFYFDV 163
Query: 48 GDKIKFRVTSELFTETSPISCPDIHDGAPGSE--------VDTPKIPYSYGY 91
G+ ++FRV E + + P S PD+ DG + V P PY+Y Y
Sbjct: 164 GETVRFRVEQEEWHDQVP-SGPDLQDGLATPDRKPPYSIIVCQPSTPYTYIY 214
>gi|388853764|emb|CCF52485.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Ustilago hordei]
Length = 234
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-----------HDLFMDPGDK 50
+T+GFF+DI +P + +P FD +E+ W W ++ ++ +++D G+
Sbjct: 99 ITVGFFDDIYVPSHLIPKPCAFDHQERAWFWLYEARTEQIAADPLLSQQDERMYLDTGEV 158
Query: 51 IKFRVTSELFTETSP 65
++F V S+ F + P
Sbjct: 159 VRFTVESDAFHDAEP 173
>gi|209881416|ref|XP_002142146.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209557752|gb|EEA07797.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 198
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF DI IP L++P + ++W W + + H L+ I+FRVT LF
Sbjct: 116 VSLGFFNDIKIPSNELREPKSMNGDTKLWSWNY----ETHQLYYLINSIIRFRVTGVLFN 171
Query: 62 ET 63
++
Sbjct: 172 DS 173
>gi|310793419|gb|EFQ28880.1| RNA polymerase III subunit Rpc25 [Glomerella graminicola M1.001]
Length = 197
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI IP + L + + F+ EQ+W+W EGD+ LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFIPFDELPEGAEFNHSEQLWIWNI--EGDR--LFYDNHEMVRFQVIDEEWHDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTPKIPYS 88
+ + AP PK PY
Sbjct: 159 VGPSQGEEAAP------PKPPYK 175
>gi|410082637|ref|XP_003958897.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
gi|372465486|emb|CCF59762.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
Length = 204
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + F+ + W+W D E L+ D +K++FRV E+F +
Sbjct: 102 LGLFDDIFIPKNMLFEGCYFEPNDLAWIWPMDEE---TKLYFDVNEKVRFRVEKEIFVDV 158
Query: 64 SP 65
P
Sbjct: 159 KP 160
>gi|255718171|ref|XP_002555366.1| KLTH0G07546p [Lachancea thermotolerans]
gi|238936750|emb|CAR24929.1| KLTH0G07546p [Lachancea thermotolerans CBS 6340]
Length = 208
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP + L + F + WVW D E L+ D +KI+FRV E+F +
Sbjct: 102 LGVFDDIFIPQKMLFEGCYFSPDDNAWVWPMDEET---KLYFDVNEKIRFRVEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|15222202|ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana]
gi|23296904|gb|AAN13199.1| putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 204
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 2 VTLGFFEDILIPPEGLQQPSR-----FDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
+TLGFF+DI +P + +P+R ++ K+ +WVWE+ K D +D +IKFRV
Sbjct: 99 LTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP--KEDYIVDDACQIKFRVE 156
Query: 57 S 57
S
Sbjct: 157 S 157
>gi|68480238|ref|XP_715928.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|68480354|ref|XP_715878.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437521|gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437573|gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|238879020|gb|EEQ42658.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
albicans WO-1]
Length = 195
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF++I IP + L + ++ E EQ W++ D+++LF+D +KI+FRV E F
Sbjct: 99 VRMEFFDEIWIPKDFLFENCKYSESEQAWIYLL----DENELFIDVNEKIRFRVEEENFY 154
Query: 62 ETSP 65
P
Sbjct: 155 NVKP 158
>gi|294954871|ref|XP_002788336.1| RPB7 subunit of the RNA polymerase III, OB fold, putative
[Perkinsus marinus ATCC 50983]
gi|239903648|gb|EER20132.1| RPB7 subunit of the RNA polymerase III, OB fold, putative
[Perkinsus marinus ATCC 50983]
Length = 189
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 2 VTLG-FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
V LG +F+D+ IP L+ P +DE+ ++W+W++ E F PG +I F V + +F
Sbjct: 105 VKLGSWFKDVHIPYADLKDPCLYDEQTKLWIWQYKREDATDSFFYRPGAEICFSVKAIVF 164
Query: 61 TE 62
+
Sbjct: 165 NQ 166
>gi|294948290|ref|XP_002785689.1| RNA polymerase Rpb7, putative [Perkinsus marinus ATCC 50983]
gi|239899712|gb|EER17485.1| RNA polymerase Rpb7, putative [Perkinsus marinus ATCC 50983]
Length = 213
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 2 VTLG-FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
V LG +F+D+ IP L+ P +DE+ ++W+W++ E F PG +I F V + +F
Sbjct: 105 VKLGSWFKDVHIPYADLKDPCLYDEQTKLWIWQYKREDATDSFFYRPGAEICFSVKAIVF 164
Query: 61 TE 62
+
Sbjct: 165 NQ 166
>gi|112490174|pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25.
gi|112490176|pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|6322705|ref|NP_012778.1| Rpc25p [Saccharomyces cerevisiae S288c]
gi|549722|sp|P35718.1|RPC8_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III 25 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C25
gi|396435|emb|CAA80954.1| unknown function [Saccharomyces cerevisiae]
gi|486247|emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae]
gi|516561|gb|AAA20241.1| RNA polymerase III C25 subunit [Saccharomyces cerevisiae]
gi|151941663|gb|EDN60025.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190409694|gb|EDV12959.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
gi|256271085|gb|EEU06184.1| Rpc25p [Saccharomyces cerevisiae JAY291]
gi|285813121|tpg|DAA09018.1| TPA: Rpc25p [Saccharomyces cerevisiae S288c]
gi|323308337|gb|EGA61583.1| Rpc25p [Saccharomyces cerevisiae FostersO]
gi|349579425|dbj|GAA24587.1| K7_Rpc25p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764539|gb|EHN06061.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298294|gb|EIW09392.1| Rpc25p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 212
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|224062241|ref|XP_002300802.1| predicted protein [Populus trichocarpa]
gi|222842528|gb|EEE80075.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 2 VTLGFFEDILIPPEGLQQPSRF-----DEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
++LGFF+DI IP +Q+PSR + + +WVWEF+ E + F+D D+I+F+V
Sbjct: 99 LSLGFFDDINIPAGLIQKPSRHVPDPENRYKVLWVWEFNGE----EFFVDGIDEIRFKVI 154
Query: 57 S 57
S
Sbjct: 155 S 155
>gi|367014661|ref|XP_003681830.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
gi|359749491|emb|CCE92619.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
Length = 210
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
+G FEDI +P + L + + + WVW D E L+ D +KI+FRV E+F +
Sbjct: 102 MGVFEDIFLPKKMLFEGCLYSPDDSAWVWPMDEE---TKLYFDVNEKIRFRVEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|363756270|ref|XP_003648351.1| hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891551|gb|AET41534.1| Hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
Length = 210
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + F + WVW D++ L+ D +KI+FR+ E+F +
Sbjct: 102 LGLFDDIFIPENMLFEGCYFSVDDNAWVWPMDSD---TKLYFDINEKIRFRIEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|343429728|emb|CBQ73300.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Sporisorium reilianum SRZ2]
Length = 244
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-----------HDLFMDPGDK 50
+TLGFF+DI +P + +P FD +E+ W W ++ ++ +++D +
Sbjct: 99 ITLGFFDDIYVPFHLIPKPCAFDHQERAWFWLYEARTEQIAADPLLSQQEERMYLDTAEA 158
Query: 51 IKFRVTSELF--TETSPISCPDIHDGAPGSEVDTPK 84
++F V S+ F E P + P D T K
Sbjct: 159 VRFTVESDAFWDAEPGPGTAPGTADSTAHHNQHTAK 194
>gi|323304205|gb|EGA57981.1| Rpc25p [Saccharomyces cerevisiae FostersB]
Length = 212
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|328872887|gb|EGG21254.1| hypothetical protein DFA_01132 [Dictyostelium fasciculatum]
Length = 1058
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
+V+LGF+ D++I L PS +DE EQ+W WE+ + LF + +++F+V + F
Sbjct: 890 IVSLGFYNDVMISSIDLPNPSFYDEGEQLWYWEWADT----QLFFEARGRVRFKVDNVEF 945
Query: 61 TETSPISCPDIHDGAPGSEV 80
P I AP +++
Sbjct: 946 N-------PAISQPAPKAKI 958
>gi|154308992|ref|XP_001553831.1| hypothetical protein BC1G_08024 [Botryotinia fuckeliana B05.10]
Length = 196
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF++I +P + L + S F+ EQV+VWE + EG + L+ D + ++FRV SE + + +P
Sbjct: 103 FFDEIFVPAKMLPEGSHFNHNEQVFVWETE-EGTQ--LYFDNQETVRFRVDSEQWNDQAP 159
Query: 66 ISCPDIHDGAPGSEV 80
+ P+ D + S V
Sbjct: 160 LG-PEKQDDSEESRV 173
>gi|50290635|ref|XP_447750.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527061|emb|CAG60697.1| unnamed protein product [Candida glabrata]
Length = 216
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
+G F+DI IP + L + S + ++ WVW D E L++D + I+FRV E+F +
Sbjct: 102 MGLFDDIFIPKKMLFEGSYYSPEDGAWVWPMDEE---TKLYLDVNEMIRFRVEEEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPPS 162
>gi|396473245|ref|XP_003839299.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
gi|312215868|emb|CBX95820.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
Length = 213
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++ L F +I IP + L + S FD+ E VWVW D +LF D G+ + FRV E +
Sbjct: 98 IIDLDFTSEIFIPYQNLFENSSFDQAESVWVW----NSDGTELFFDKGEPVLFRVEQEEW 153
Query: 61 TETSPISCPDIHDG 74
+ P DG
Sbjct: 154 IDQRPTIVQKDEDG 167
>gi|365759736|gb|EHN01510.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 212
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 TLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTE 62
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 101 VLGIFDDIFIPQNMLFEGCYYTPEEGAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVD 157
Query: 63 TSPIS 67
P S
Sbjct: 158 VKPKS 162
>gi|380491621|emb|CCF35188.1| RNA polymerase III subunit Rpc25 [Colletotrichum higginsianum]
Length = 197
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI IP + L + + F+ EQ+W+W EGD+ LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFIPFDELPEGAEFNHSEQLWIWNI--EGDR--LFYDNHEMVRFQVIDEEWHDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTPKIPYS 88
+ AP PK PY
Sbjct: 159 AGPSQGEEAAP------PKPPYK 175
>gi|50422141|ref|XP_459633.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
gi|49655301|emb|CAG87863.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
Length = 196
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF++I IP + F E+ WVW+ D D +L++D +KI+FR+ E+F
Sbjct: 99 VKLEFFDEIFIPKNYFFENCLFKPVEKAWVWKPD---DDTELYIDINEKIRFRIEEEIFV 155
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIP 86
P S + A G E T K P
Sbjct: 156 NIKPKSSSE----AFGLEEPTNKAP 176
>gi|323336829|gb|EGA78092.1| Rpc25p [Saccharomyces cerevisiae Vin13]
Length = 212
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESXWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|401840255|gb|EJT43152.1| RPC25-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 212
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEEGAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|384254130|gb|EIE27604.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 211
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++L FFEDI +P L PS FDE E +W W+F+++ ++++ D I+ RV F
Sbjct: 99 LSLDFFEDIFVPEHALPAPSFFDEAEGLWFWKFEDQ----PMWLEMEDAIRLRVKGVKFR 154
Query: 62 ET 63
+
Sbjct: 155 QA 156
>gi|71017639|ref|XP_759050.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
gi|46098719|gb|EAK83952.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
Length = 249
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-----------HDLFMDPGDK 50
V++GFF+DI IP + +P FD +E+ W W ++ ++ +++D +
Sbjct: 99 VSMGFFDDIYIPYHLIPKPCAFDHQERAWFWLYEARTEQIAADPLLSQPEERMYLDTAEA 158
Query: 51 IKFRVTSELFTETSP 65
++F V S+ F ++ P
Sbjct: 159 VRFTVESDAFWDSEP 173
>gi|344228476|gb|EGV60362.1| hypothetical protein CANTEDRAFT_110098 [Candida tenuis ATCC 10573]
Length = 201
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF++I I E L + F E+ W W+ D D+++LF+D ++I+FRV E F
Sbjct: 99 VKLDFFDEIFIRKEMLFENCEFKGVERAWCWKPD---DENELFIDLNERIRFRVEEEAFY 155
Query: 62 ETSP 65
P
Sbjct: 156 NIKP 159
>gi|347838548|emb|CCD53120.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Botryotinia fuckeliana]
Length = 196
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF++I +P + L + S F+ EQV+VWE + EG + L+ D + ++FR+ SE +
Sbjct: 99 VRTHFFDEIFVPAKMLPEGSHFNHNEQVFVWETE-EGTQ--LYFDNQETVRFRIDSEQWN 155
Query: 62 ETSPISCPDIHDGAPGSEV 80
+ +P+ P+ D + S V
Sbjct: 156 DQAPLG-PEKQDDSEESRV 173
>gi|126274174|ref|XP_001387865.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126213735|gb|EAZ63842.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 196
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V L FF++I IP + + F E+ WVW+ D + + F+D +KI+FRV E+F
Sbjct: 99 VRLDFFDEIFIPKRYIFENCEFKPVEKAWVWKPDEDS---EFFIDINEKIRFRVEEEIFV 155
Query: 62 ETSPIS 67
P S
Sbjct: 156 NIKPKS 161
>gi|366994608|ref|XP_003677068.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
gi|342302936|emb|CCC70713.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
Length = 222
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F D+ IP + L + + ++ WVW D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGMFNDVFIPQKMLFEGCYYSPEDSAWVWPMDEE---TKLYFDVNEKIRFRIEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|365984895|ref|XP_003669280.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
gi|343768048|emb|CCD24037.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG FEDI IP + L + + ++ WVW + + L+ D +KI+FRV E+F +
Sbjct: 102 LGMFEDIFIPKKMLFEGCYYSPEDSAWVWPMEED---TKLYFDLNEKIRFRVEQEVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF---TE 62
FF+DI IP + L + + F+ ++ +WVW D E D++ D + ++FRV++E + T
Sbjct: 103 FFDDIFIPFDELPEGATFNHEQSLWVWHVDGE----DMYYDIHEVVRFRVSAEEWHDQTP 158
Query: 63 TSPISCPDIHDGAP 76
T PI + H+ P
Sbjct: 159 TKPIEGNEPHEKKP 172
>gi|291000977|ref|XP_002683055.1| predicted protein [Naegleria gruberi]
gi|284096684|gb|EFC50311.1| predicted protein [Naegleria gruberi]
Length = 196
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V +GFF DI IPP L QP ++DE+ W W ++ D + P +I+FRV S F
Sbjct: 101 VAIGFFNDIYIPPYLLAQPCKYDEETSQWQWIYE---DNALPYAHP-QEIRFRVNSLTFN 156
Query: 62 ET 63
T
Sbjct: 157 TT 158
>gi|241948883|ref|XP_002417164.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
gi|223640502|emb|CAX44756.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
Length = 195
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF++I IP + L + ++ E EQ W++ D+++LF+D ++I+FRV E F
Sbjct: 99 VRMEFFDEIWIPKDFLFENCQYSESEQAWIYLL----DENELFIDVNERIRFRVEEENFY 154
Query: 62 ETSP 65
P
Sbjct: 155 NVKP 158
>gi|320165968|gb|EFW42867.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 207
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 1 MVTLG-FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSEL 59
+V +G FF+D+ IP E LQ + F+ Q +VW F + +L M+ +I+FRV ++
Sbjct: 98 IVNIGTFFDDVFIPAENLQPGTIFNPDLQEFVWTF----AEQELRMEADSRIRFRVVADR 153
Query: 60 FTETSPISCPDIHDGAP 76
F++ +P +H AP
Sbjct: 154 FSDLTP-----VHTEAP 165
>gi|346978388|gb|EGY21840.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Verticillium dahliae VdLs.17]
Length = 174
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF+DI +P E L + + F+ ++Q+W+W D E LF D + ++F+V E +
Sbjct: 70 VRTDFFDDIFVPFEDLPEGAEFNHRDQIWIWNCDEE---TQLFYDIHEMVRFQVIDEEWH 126
Query: 62 ETSPIS 67
+ +P+
Sbjct: 127 DQAPLG 132
>gi|330804580|ref|XP_003290271.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
gi|325079597|gb|EGC33189.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
Length = 234
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRV 55
+T+GF+++I + P L PS F ++E++W WE+++ + LF + G +++FRV
Sbjct: 98 ITIGFYDEIYLNPIELPIPSSFSDEEKLWYWEWND----NQLFFENGGRVRFRV 147
>gi|429854331|gb|ELA29351.1| DNA-directed RNA polymerase iii polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 197
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI IP + L + + ++ EQ+W+W EGD+ LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFIPFDELPEGAEYNHSEQLWIWNI--EGDR--LFYDNHEMVRFQVIDEEWHDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTPKIPYS 88
+ AP PK PY
Sbjct: 159 AGPSQGEEAAP------PKPPYK 175
>gi|401624904|gb|EJS42941.1| rpc25p [Saccharomyces arboricola H-6]
Length = 213
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 5 GFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETS 64
G F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 103 GIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDVK 159
Query: 65 PIS 67
P S
Sbjct: 160 PKS 162
>gi|428178891|gb|EKX47764.1| DNA-directed RNA polymerase III subunit RPC25 [Guillardia theta
CCMP2712]
Length = 187
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPG 48
++LGFF+DI +PP +Q S +DE+ Q+WVW + + D +DP
Sbjct: 99 ISLGFFQDIFVPPHFMQDGSEWDEEHQLWVW----KSEHGDAMLDPA 141
>gi|336273894|ref|XP_003351701.1| hypothetical protein SMAC_00243 [Sordaria macrospora k-hell]
gi|380095980|emb|CCC06027.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 193
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
+ FF DI +P L S FD E+VWVW+ EG +L+ D + ++FRV E + +
Sbjct: 101 MDFFNDIFVPAAELPDNSEFDTTEKVWVWK--EEG--QELYYDNNEMVRFRVIGEEWHDQ 156
Query: 64 SPISCPDIHDGA 75
+P ++ A
Sbjct: 157 TPTGPVEVDQAA 168
>gi|297843474|ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 2 VTLGFFEDILIPPEGLQQPSR-----FDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
+TLGFF+DI +P + +P+R ++ K+ +WVWE+ D +D +IKFRV
Sbjct: 99 LTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP--LEDFIIDDSCQIKFRVE 156
Query: 57 S 57
S
Sbjct: 157 S 157
>gi|444317941|ref|XP_004179628.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
gi|387512669|emb|CCH60109.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
Length = 205
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETS 64
G F DI IP L + F ++ WVW D E L+ D +KI+FRV E+F +
Sbjct: 103 GAFSDIFIPKNMLFEGCYFAPEDNAWVWPMDEE---TKLYFDINEKIRFRVEKEVFLDVK 159
Query: 65 PIS 67
P S
Sbjct: 160 PKS 162
>gi|224005523|ref|XP_002291722.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
gi|220972241|gb|EED90573.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
Length = 223
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 5 GFFEDILIPPEGLQQPSRFDEKEQVWVW--EFDNEGDKHDLFMDPGDKIKFRVTSELFTE 62
GFF+ + IP + PSR+DE+ +WVW + E +++ ++ G +I+F+V S FT
Sbjct: 104 GFFDHVFIPAYWMLNPSRYDEESGLWVWTPKTTTEKEENRFEIEIGAEIRFKVKSVNFTR 163
Query: 63 TS 64
+
Sbjct: 164 IT 165
>gi|350296038|gb|EGZ77015.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
[Neurospora tetrasperma FGSC 2509]
Length = 193
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
+ FF DI +P L S FD E+VWVW+ EG +L+ D + ++FRV E + +
Sbjct: 101 MDFFNDIFVPAAELPDNSEFDTTEKVWVWK--EEG--QELYFDNNEMVRFRVIGEEWHDQ 156
Query: 64 SP 65
+P
Sbjct: 157 TP 158
>gi|407929309|gb|EKG22141.1| RNA polymerase Rpb7 [Macrophomina phaseolina MS6]
Length = 200
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 VTLGFFEDILIP-PEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
+ L FF+DI +P P L ++ E+VWVW +GD +LF D + ++FRV +E++
Sbjct: 99 IALEFFDDIFVPGPVNLFDGVKYVGAERVWVW-VTEQGD--ELFFDLEETVRFRVEAEIW 155
Query: 61 TETSP 65
T+ SP
Sbjct: 156 TDQSP 160
>gi|302411694|ref|XP_003003680.1| DNA-directed RNA polymerase III subunit RPC8 [Verticillium
albo-atrum VaMs.102]
gi|261357585|gb|EEY20013.1| DNA-directed RNA polymerase III subunit RPC8 [Verticillium
albo-atrum VaMs.102]
Length = 135
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P E L + + F+ ++Q+W+W D E LF D + ++F+V E + + +P
Sbjct: 35 FFDDIFVPFEDLPEGAEFNHRDQIWIWNCDEE---TQLFYDIHEMVRFQVIDEEWHDQAP 91
Query: 66 IS 67
+
Sbjct: 92 LG 93
>gi|156846922|ref|XP_001646347.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
gi|156117022|gb|EDO18489.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
Length = 222
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 5 GFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETS 64
G +DI IP L + + E WVW D E L+ D +KI+FR+ E+F +
Sbjct: 103 GMMDDIFIPKNMLFEGCFYSVSENAWVWPMDEE---TKLYFDINEKIRFRIEQEIFVDVK 159
Query: 65 PIS 67
P S
Sbjct: 160 PKS 162
>gi|66822507|ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|66822575|ref|XP_644642.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|122057759|sp|Q557J3.1|RPC8_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H
gi|60472717|gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60472766|gb|EAL70716.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 252
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++LGFF +I + P L PS ++++E +W WE+ +++ LF + G +++F++ F
Sbjct: 98 ISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW----NENQLFFEDGGRVRFKIDQVEFN 153
Query: 62 ETSPISCPDIHDGAPG-SEVDTPKI-PYSYGYYSLAVLRTQ-LLSPVR 106
P+I AP V+T + YS Y + + LL V+
Sbjct: 154 -------PEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVK 194
>gi|403367976|gb|EJY83816.1| DNA-directed RNA polymerase, subunit E' [Oxytricha trifallax]
Length = 215
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 10 ILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK--HDLFMDPGDKIKFRVTSELFTE 62
+ IP E L +PS +D E+ W+W + +E K HD++ G I+FRV FT+
Sbjct: 104 VFIPSENLIKPSFYDTLEKKWLWRYYDESLKQDHDMYFQDGQTIRFRVKELNFTK 158
>gi|190348881|gb|EDK41428.2| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ + FF++I +P + F E+ WVW+ D D+ +L++D ++++FRV E+F+
Sbjct: 99 IGMRFFDEIFVPKNYFFENCEFKPVEKAWVWKPD---DETELYIDVNERVRFRVEEEVFS 155
Query: 62 ETSP 65
P
Sbjct: 156 SIKP 159
>gi|392564956|gb|EIW58133.1| polymerase III polypeptide H [Trametes versicolor FP-101664 SS1]
Length = 220
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEG-DKHDL---------FMDPGDKI 51
+T+GFF+DI +P L +P+ FD KE+ W +E H+L ++D GD +
Sbjct: 99 LTVGFFDDIYVPLVYLPEPTAFDSKERAHFWLPGSEATSSHELLDSALTDRMYIDTGDVV 158
Query: 52 KFRVTSELFTETSPISCPDIHDG 74
+ RV S+ F + P P H+G
Sbjct: 159 RVRVESDEFHDDEP-GPPKAHEG 180
>gi|395325654|gb|EJF58073.1| polymerase III polypeptide H [Dichomitus squalens LYAD-421 SS1]
Length = 220
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEG-DKHDL---------FMDPGDKI 51
+T+GFF+DI +P L +P+ FD KE+ W +E H+L ++D GD +
Sbjct: 99 LTVGFFDDIYVPLVYLPEPTAFDPKERAHFWLPGSEATSTHELLDSPLTDRMYIDAGDVV 158
Query: 52 KFRVTSELFTETSPISCPDIHDG 74
+ RV S+ F + P P H+G
Sbjct: 159 RVRVESDQFHDDEP-GPPKAHEG 180
>gi|400596259|gb|EJP64035.1| RNA polymerase III subunit Rpc25 [Beauveria bassiana ARSEF 2860]
Length = 195
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF+DI +P E L + ++ EQ+W+W D E LF D + ++ +V E +
Sbjct: 100 VRTDFFDDIFVPFEELPAGAEYNHSEQLWIWNIDEE---ERLFYDTHEMVRLQVVDEEWH 156
Query: 62 ETSPISCPDIHDGAPGSEVDTP-KIPY 87
+ +PI P D+P K PY
Sbjct: 157 DQTPI--------GPTQAEDSPIKTPY 175
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW----EFDNEGDKHDL---------FMDPG 48
+T+GFF+D+ +P L QPS FD E+ W + D E DL ++D G
Sbjct: 99 LTMGFFDDMYVPLAYLPQPSAFDPSERAHFWLPSSDDDTETAPADLLDSPKDARMYIDAG 158
Query: 49 DKIKFRVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPV 105
+ ++ RV S++F + P G V + PYS + + Q L PV
Sbjct: 159 EVLRVRVESDMFCDDEPGPPRAGEGGVAPPPVRERRAPYSV----VCSISEQGLGPV 211
>gi|403217141|emb|CCK71636.1| hypothetical protein KNAG_0H02220 [Kazachstania naganishii CBS
8797]
Length = 206
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
F+DI IP L F E WVW D D + L+ D + I+FRV E+F + P
Sbjct: 105 MFQDIFIPANMLFDNCYFLPNESAWVWAMD---DDNKLYFDINEMIRFRVEQEVFIDVKP 161
Query: 66 ISCPDIHDGAPGSEVDT 82
+ D A +E D
Sbjct: 162 SA----RDEAAKNEEDN 174
>gi|342873576|gb|EGU75740.1| hypothetical protein FOXB_13759 [Fusarium oxysporum Fo5176]
Length = 138
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P E L + + ++ EQ+W+W D + LF D + ++F+V E + + +P
Sbjct: 48 FFDDIFVPFEELPEGAEYNHSEQLWIWNLDED----RLFYDNHEMVRFQVIDEEWHDQAP 103
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
P D+P K PY
Sbjct: 104 --------AGPTQAEDSPLKTPY 118
>gi|406865974|gb|EKD19014.1| RNA polymerase III subunit Rpc25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 250
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF++I +P + L + + F+E+ ++W + +GD+ L+ D D ++ R+ E++T
Sbjct: 128 VRVPFFQEIFVPVDKLPEGASFNEELGQYIWVPEPDGDQ--LYFDANDIVRVRIEDEIWT 185
Query: 62 ETSPISCPDIHDGA 75
+ SP+ + +GA
Sbjct: 186 DQSPVGPREKEEGA 199
>gi|146413070|ref|XP_001482506.1| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ + FF++I +P + F E+ WVW+ D D+ +L++D ++++FRV E+F
Sbjct: 99 IGMRFFDEIFVPKNYFFENCEFKPVEKAWVWKPD---DETELYIDVNERVRFRVEEEVFL 155
Query: 62 ETSP 65
P
Sbjct: 156 SIKP 159
>gi|322709216|gb|EFZ00792.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Metarhizium anisopliae ARSEF 23]
Length = 109
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI IP E L Q + ++ EQ+W+W +++ LF D + ++F+V E + + +P
Sbjct: 19 FFDDIFIPFEELPQGAEYNHSEQLWIWNLEDD----RLFYDNHEMVRFQVIDEEWHDQTP 74
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
P +TP K PY
Sbjct: 75 --------AGPTQGEETPAKTPY 89
>gi|322692727|gb|EFY84619.1| DNA-directed rna polymerase III 25 kD polypeptide [Metarhizium
acridum CQMa 102]
Length = 109
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI IP E L Q + ++ EQ+W+W +++ LF D + ++F+V E + + +P
Sbjct: 19 FFDDIFIPFEELPQGAEYNHSEQLWIWNLEDD----RLFYDNHEMVRFQVIDEEWHDQTP 74
>gi|302686598|ref|XP_003032979.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
gi|300106673|gb|EFI98076.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
Length = 228
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW------------EFDNEGDKHDLFMDPGD 49
V+L FF+D+ IP L QPS FD E+ W D D +++D G+
Sbjct: 99 VSLNFFDDVYIPAMYLPQPSAFDPNERAHFWLPNPPENPSVHVLLDTPTDTR-MYIDAGE 157
Query: 50 KIKFRVTSELF--TETSPISCPDIH---DGAPGSEVDTPKIPYS 88
I+ RV ++ F E P+ P+I+ AP SE P PY+
Sbjct: 158 VIRMRVEADEFYDDEPGPVQKPEINGPVKAAPTSENKRP--PYT 199
>gi|412992998|emb|CCO16531.1| predicted protein [Bathycoccus prasinos]
Length = 238
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 18/79 (22%)
Query: 2 VTLGFFEDILIPPE--GLQ-QPSRFDEKEQVW---------VWEFDNEGDKHDL------ 43
V+LGFF+D+++ P G+ + +++D+KE++W + E +NEG++ ++
Sbjct: 101 VSLGFFDDLIVLPNKSGMDLEKTKWDDKEKIWYIEEESVEFLAESNNEGNREEIGLMVKK 160
Query: 44 FMDPGDKIKFRVTSELFTE 62
F++PG +I+ RVT + E
Sbjct: 161 FIEPGQQIRVRVTQVTYPE 179
>gi|320586938|gb|EFW99601.1| DNA-directed RNA polymerase 3 25 kd polypeptide [Grosmannia
clavigera kw1407]
Length = 165
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF+DILIP + L + +D +Q+WVW EG + +F D + ++FRV E +
Sbjct: 70 VRTDFFDDILIPYDELPDEAEYDINQQLWVWNV--EGQR--MFYDMHEMVRFRVIDEEWH 125
Query: 62 ETSP 65
+ +P
Sbjct: 126 DQTP 129
>gi|389631563|ref|XP_003713434.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
gi|351645767|gb|EHA53627.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
Length = 213
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P + L + + FD + +WVW +++ +++ D + ++FRV+SE + + +P
Sbjct: 103 FFDDIFVPFDELPEGATFDHDQSLWVWHVEDQ----EMYYDIHEMVRFRVSSEEWQDQTP 158
Query: 66 ISCPDIHDGAPGSEVDTPKIPY 87
GSE+ K PY
Sbjct: 159 TK------PIEGSELPEKKPPY 174
>gi|221505857|gb|EEE31502.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1221
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDK-IKFRVTSELF 60
++LGFF D+ IP L++P F+ + W W F++ H+L P + I+FRV F
Sbjct: 1120 ISLGFFHDVYIPAAALREPKGFNAASERWWWGFED----HELEYAPLQQAIRFRVQEIRF 1175
Query: 61 TE 62
+
Sbjct: 1176 DQ 1177
>gi|237838547|ref|XP_002368571.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
gi|211966235|gb|EEB01431.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
Length = 1215
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDK-IKFRVTSELF 60
++LGFF D+ IP L++P F+ + W W F++ H+L P + I+FRV F
Sbjct: 1114 ISLGFFHDVYIPAAALREPKGFNAASERWWWGFED----HELEYAPLQQAIRFRVQEIRF 1169
Query: 61 TE 62
+
Sbjct: 1170 DQ 1171
>gi|221484160|gb|EEE22456.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1214
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDK-IKFRVTSELF 60
++LGFF D+ IP L++P F+ + W W F++ H+L P + I+FRV F
Sbjct: 1113 ISLGFFHDVYIPAAALREPKGFNAASERWWWGFED----HELEYAPLQQAIRFRVQEIRF 1168
Query: 61 TE 62
+
Sbjct: 1169 DQ 1170
>gi|169602221|ref|XP_001794532.1| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
gi|160706125|gb|EAT87866.2| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
Length = 270
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++ L F ++ +P + L + S F + E VWVW D +LF+D G+ + FRV E +
Sbjct: 156 IIDLDFTSEVFVPYQNLFENSSFSQAEGVWVW----NSDGTELFLDKGEPVLFRVEQEEW 211
Query: 61 TETSP 65
+ P
Sbjct: 212 FDQRP 216
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++ L F +I IP + L + S F + E VWVW ++EG +LF D G+ + FRV E +
Sbjct: 98 IIDLEFTSEIFIPYQNLPENSSFSQAENVWVW--NSEG--TELFFDKGEPVLFRVEHEEW 153
Query: 61 TETSP 65
+ P
Sbjct: 154 FDQRP 158
>gi|323452814|gb|EGB08687.1| hypothetical protein AURANDRAFT_25657 [Aureococcus anophagefferens]
Length = 219
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFD-------NEGDKHDLFMDPGDKIKFR 54
+LGFFED+ IP + L P+ +D+ +W W D GD +D G +++FR
Sbjct: 99 ASLGFFEDVNIPSKFLPTPAYYDKDSNIWTWRPDLGDDEDGGGGDDACFHLDVGLELRFR 158
Query: 55 VTSELFTETS 64
V + FT S
Sbjct: 159 VAAINFTRVS 168
>gi|46122449|ref|XP_385778.1| hypothetical protein FG05602.1 [Gibberella zeae PH-1]
Length = 199
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P E L + + ++ EQ+W+W + + LF D + ++F+V E + + +P
Sbjct: 109 FFDDIFVPFEELPEGAEYNHSEQLWIWNLEED----RLFYDNHEMVRFQVIDEEWHDQAP 164
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
P D+P K PY
Sbjct: 165 --------AGPTQPEDSPLKTPY 179
>gi|393221996|gb|EJD07480.1| hypothetical protein FOMMEDRAFT_143872 [Fomitiporia mediterranea
MF3/22]
Length = 243
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW-------EFDNE--GDKHDL--------- 43
+++GFF+D+ IPP L PS FD E+ + W E D E +H+L
Sbjct: 99 LSIGFFDDMHIPPSYLPAPSAFDPSERAYFWIAKHAPLEEDPEHVCTQHELLDTPTSERM 158
Query: 44 FMDPGDKIKFRVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYS 88
++D G+ ++ RV ++ F + P P +G ++ + + PYS
Sbjct: 159 YIDTGEVLRVRVETDEFYDDEP-GPPRASEGVMSTKAERRRPPYS 202
>gi|408394367|gb|EKJ73575.1| hypothetical protein FPSE_06193 [Fusarium pseudograminearum CS3096]
Length = 193
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P E L + + ++ EQ+W+W + + LF D + ++F+V E + + +P
Sbjct: 103 FFDDIFVPFEELPEGAEYNHSEQLWIWNLEED----RLFYDNHEMVRFQVIDEEWHDQAP 158
Query: 66 ISCPDIHDGAPGSEVDTP-KIPY 87
P D+P K PY
Sbjct: 159 --------AGPTQPEDSPLKTPY 173
>gi|340992695|gb|EGS23250.1| DNA-directed RNA polymerase III subunit-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 191
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF+DI +P L + S F+ E +WVW+ D++ ++ D + ++FRV +E + + +P
Sbjct: 97 FFDDIFVPWTELPEGSEFEPTENLWVWKEDDQV----MYFDNNEMVRFRVIAEDWHDQTP 152
Query: 66 ISCPDIHDGAPGSEVDTPKIPY 87
S P +G + K PY
Sbjct: 153 -SKPTEAEGTEEAAQANYKPPY 173
>gi|346321249|gb|EGX90849.1| DNA-directed RNA polymerase III, putative [Cordyceps militaris
CM01]
Length = 192
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V FF+DI +P E L + ++ EQ+W+W D+ LF D + ++ +V E +
Sbjct: 99 VRTDFFDDIFVPFEELPPGAEYNHSEQLWIWSV----DEQRLFYDTHEMVRLQVVDEEWH 154
Query: 62 ETSPISCPDIHDGAPGSEVDTP-KIPY 87
+ +PI P D+P K PY
Sbjct: 155 DQTPI--------GPTQAEDSPIKTPY 173
>gi|313225157|emb|CBY20950.1| unnamed protein product [Oikopleura dioica]
gi|313240114|emb|CBY32466.1| unnamed protein product [Oikopleura dioica]
Length = 199
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 23/112 (20%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQV---WVWEFDNEGD-----KHDLFMDPGDKIKF 53
+T+GFF+DI +P + + P+ F + E W+W F +E D H++ +++F
Sbjct: 99 LTIGFFDDIFVPKKYIPAPNEFVQSEGAKGKWIWTFVDEEDPEETESHEIV--ERIELRF 156
Query: 54 RVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPV 105
RV E+F E P + PD P IPY +A + Q L P+
Sbjct: 157 RVKEEVFEECLPQT-PD--------SAAVPTIPYKI----VATIDEQGLGPL 195
>gi|357517545|ref|XP_003629061.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523083|gb|AET03537.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 191
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQV--WVWEFDNEGDKHDLFMDPGDKIKFRVTS 57
++LGFFEDI IP + PS + K W WE+ E D+ ++ + ++I+F+V S
Sbjct: 98 LSLGFFEDIYIPTHHMPYPSYYISKNNTRKWTWEYGEETDEFNI--EISNEIRFQVLS 153
>gi|242799025|ref|XP_002483289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716634|gb|EED16055.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
Length = 195
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
+ + FF DI +P + L S +D E +W W + + + H + D G+ ++FRV +E +
Sbjct: 99 IGMEFFSDITVPGDLLFDGSEYDIAENLWAWHYPDAPEPH--WYDIGEVVRFRVEAEEWH 156
Query: 62 ETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ P + PD + SE K PYS
Sbjct: 157 DQRP-TGPDRMEAQTVSE---SKPPYS 179
>gi|403414624|emb|CCM01324.1| predicted protein [Fibroporia radiculosa]
Length = 199
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEG-DKHDL---------FMDPGDKI 51
+T+GFF+D+ +P L +PS FD E+ W EG H+L ++D G+ +
Sbjct: 78 LTVGFFDDVYVPLIYLPEPSAFDPNERAHFWLPGAEGKSSHELLDSATADRMYVDTGEVV 137
Query: 52 KFRVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYS 88
+ RV ++ F + P P +G ++ + + PY+
Sbjct: 138 RVRVEADEFYDDEP-GPPKATEGVQQAQAEGRRPPYT 173
>gi|401402842|ref|XP_003881348.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
gi|325115760|emb|CBZ51315.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
Length = 200
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDP-GDKIKFRVTSELF 60
++LGFF+D+ +P L++P F+ + W W F++ H+L P I+FRV F
Sbjct: 99 ISLGFFQDVYVPAAALREPRGFNPASERWWWGFED----HELEYGPLQQAIRFRVQEIRF 154
Query: 61 TET 63
++
Sbjct: 155 DQS 157
>gi|409081111|gb|EKM81470.1| hypothetical protein AGABI1DRAFT_35937 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196321|gb|EKV46249.1| hypothetical protein AGABI2DRAFT_70931 [Agaricus bisporus var.
bisporus H97]
Length = 227
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW-------------EFDNEGDKHDLFMDPG 48
+T+GFF+DI IP L QPS FD E+ W + + +++D G
Sbjct: 99 LTMGFFDDIYIPTAYLPQPSTFDSNERAHFWLPPGEESEAPTSQQLLDSPVADRMYIDQG 158
Query: 49 DKIKFRVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPVRF 107
+ ++ RV +E F + P P + +G V + P Y + + Q L PV +
Sbjct: 159 EVLRVRVEAEDFYDDEP-GPPKMAEG-----VQVVRDPKRAPYNIICSIAEQGLGPVAW 211
>gi|392578056|gb|EIW71184.1| hypothetical protein TREMEDRAFT_42634 [Tremella mesenterica DSM
1558]
Length = 224
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-------------HDLFMDPG 48
++LGFF D+ I P L S FD+ E W W + +E D+ L++D G
Sbjct: 99 ISLGFFRDVYILPAFLPPNSAFDQDENKWFW-YSDEDDRVYSQIELLNTIYTQRLYIDIG 157
Query: 49 DKIKFRVTSELFTETSPISCPD 70
+ ++FRV S + + P P+
Sbjct: 158 EPVRFRVDSIEWQDIRPPPPPN 179
>gi|189203789|ref|XP_001938230.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985329|gb|EDU50817.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 218
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++ L F ++ IP + L + S F + E VWVW ++EG +LF D G+ + FRV E +
Sbjct: 98 IIDLEFTSEVFIPYQNLPENSTFSKAENVWVW--NSEGT--ELFFDKGEPVLFRVEHEEW 153
Query: 61 TETSP 65
+ P
Sbjct: 154 FDQRP 158
>gi|330925060|ref|XP_003300899.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
gi|311324782|gb|EFQ91031.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++ L F ++ IP + L + S F + E VWVW ++EG +LF D G+ + FRV E +
Sbjct: 98 IIDLEFTSEVFIPYQNLPENSTFSKAENVWVW--NSEGT--ELFFDKGEPVLFRVEHEEW 153
Query: 61 TETSP 65
+ P
Sbjct: 154 FDQRP 158
>gi|300176594|emb|CBK24259.2| unnamed protein product [Blastocystis hominis]
Length = 272
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTS 57
V+L F +D+ IP L S +D ++WVW + + + D ++ G+ I+FRV +
Sbjct: 99 VSLEFMDDVWIPSYNLPDVSVYDPVRRIWVWHYRDGDQQLDFDINTGEFIRFRVIA 154
>gi|409041829|gb|EKM51314.1| hypothetical protein PHACADRAFT_263362 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDL---------FMDPGDKIK 52
+TLGFF+D+ IP L +PS FD E+ + W D + DL ++D + ++
Sbjct: 99 LTLGFFDDVYIPRIFLPEPSAFDPNERAYFWVADPDSVTPDLLDTPLTSRMYIDSSEVVR 158
Query: 53 FRVTSELFTETSP 65
RV ++ F + P
Sbjct: 159 VRVEADEFYDDEP 171
>gi|307107725|gb|EFN55967.1| hypothetical protein CHLNCDRAFT_145291 [Chlorella variabilis]
Length = 221
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 16/66 (24%)
Query: 2 VTLGFFEDILIPPEGLQQPSRF------------DEKEQVWVWEFDNEGDKHDLFMDPGD 49
V LGFF+D++IPP G+ +PS + + + + W+W+ + + DLF + G
Sbjct: 99 VDLGFFKDVIIPPHGMPEPSFWKGDDEASNAAATNSRGKAWLWKVEGQ----DLFFERGL 154
Query: 50 KIKFRV 55
++F+V
Sbjct: 155 PLRFKV 160
>gi|405122725|gb|AFR97491.1| hypothetical protein CNAG_04728 [Cryptococcus neoformans var.
grubii H99]
Length = 199
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW------------EFDNEGDKHDLFMDPGD 49
V+LGFF+DI I P L S +D +++ + W + N L++DPG+
Sbjct: 70 VSLGFFQDIYIVPSLLPPNSAYDPQQKAFFWVASDDESTLTQEQLLNTVISERLYIDPGE 129
Query: 50 KIKFRVTSELFTETSP 65
I+FRV S + + P
Sbjct: 130 AIRFRVDSIEWQDVRP 145
>gi|83286669|ref|XP_730262.1| RNA polymerase Rpb7 [Plasmodium yoelii yoelii 17XNL]
gi|23489936|gb|EAA21827.1| RNA polymerase Rpb7, N-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 213
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
+V+LGFFE+I + L++P FD+++ W W + EG K F + I+ R+ F
Sbjct: 98 IVSLGFFENIRVNRAYLKEPKEFDDEKNEWYWTY--EGIK--CFYTKNEPIRIRILETYF 153
Query: 61 TETSPIS 67
++ + ++
Sbjct: 154 SDPNELN 160
>gi|357517541|ref|XP_003629059.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523081|gb|AET03535.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 220
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQV--WVWEFDNEGDKHDLFMDPGDKIKFRVTS 57
++LGFFEDI IP + PS + K W WE+ E D+ ++ + + I+F+V S
Sbjct: 126 LSLGFFEDIYIPTHHMPYPSYYISKNNTRKWTWEYGEETDEFNIEIS-NEVIRFQVLS 182
>gi|449297230|gb|EMC93248.1| hypothetical protein BAUCODRAFT_141757 [Baudoinia compniacensis
UAMH 10762]
Length = 214
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQ---VWVWEFDNEGDKHDLFMDPGDKIKFRVTSE 58
++ GFFED+++P E L S F+ ++ VW+W ++ L+ D ++ RV SE
Sbjct: 99 MSTGFFEDVVVPKEWLFSVSDFESEDGAPPVWIWRTND----MSLYFDKLERCLMRVESE 154
Query: 59 LFTETSP 65
+T+ SP
Sbjct: 155 EWTDMSP 161
>gi|169868152|ref|XP_001840650.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
gi|116498254|gb|EAU81149.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
Length = 227
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDL---------FMDPGDKI 51
+T+GFF+DI IP L QPS FD E+ + W D+ D +DL ++D + +
Sbjct: 99 LTMGFFDDIYIPAIYLPQPSVFDRHERAYFWLPDSPLTDSNDLLNTPTSERMYIDQNEVV 158
Query: 52 KFRVTSELFTETSP 65
+ RV + F + P
Sbjct: 159 RVRVEQDEFFDDEP 172
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++ L F + IP + L + S F + E VWVW ++EG +LF D G+ + FRV E +
Sbjct: 98 IIDLEFTSETFIPYQNLPENSSFSQAENVWVW--NSEG--TELFFDKGEPVLFRVEHEEW 153
Query: 61 TETSP 65
+ P
Sbjct: 154 FDQRP 158
>gi|336368541|gb|EGN96884.1| hypothetical protein SERLA73DRAFT_185115 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381332|gb|EGO22484.1| hypothetical protein SERLADRAFT_473379 [Serpula lacrymans var.
lacrymans S7.9]
Length = 222
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDK-HDL---------FMDPGDKI 51
+++GFF+D+ IP L QPS D E+ W D+E H+L ++D G+ +
Sbjct: 99 LSVGFFDDMYIPLSYLPQPSALDSNERAHFWLPDSEATTPHELLESITTDRMYIDQGEIV 158
Query: 52 KFRVTSELFTETSP 65
+ RV ++ F + P
Sbjct: 159 RVRVEADEFYDDEP 172
>gi|389745440|gb|EIM86621.1| polymerase III polypeptide H [Stereum hirsutum FP-91666 SS1]
Length = 220
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFD--EKEQVWVWEFDNEGDKHDL---------FMDPGDK 50
+++GFFED+ IP L QPS FD E+ W+ + H+L ++D G+
Sbjct: 99 LSVGFFEDMWIPLNYLPQPSAFDVNERAHFWLPSAEATATTHELLDSPTSERMYIDQGEI 158
Query: 51 IKFRVTSELFTETSP 65
++ RV ++ F + P
Sbjct: 159 VRVRVETDEFYDDEP 173
>gi|258597195|ref|XP_001347734.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|254832590|gb|AAN35647.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 186
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
+++LGFFE+I + L++P FD +++ W W + EG K F + I+ R+ F
Sbjct: 98 IISLGFFENIRVNSANLKEPKEFDREKKEWYWTY--EGIK--FFYTKDELIRVRILDTYF 153
Query: 61 TETSPIS 67
++ + ++
Sbjct: 154 SDPNEMN 160
>gi|219117503|ref|XP_002179546.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409437|gb|EEC49369.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 208
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW 32
V++GFF DI IP + +PS ++EK +W+W
Sbjct: 100 VSIGFFVDIFIPAYWMLRPSHYEEKSGLWIW 130
>gi|358054091|dbj|GAA99767.1| hypothetical protein E5Q_06470 [Mixia osmundae IAM 14324]
Length = 199
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEK--EQVWVWEFDNEGD---KHDLFMDPGDKIKFRVT 56
V+LGFF++I IP + FD ++ E+ N+ + L++ G+ F+V
Sbjct: 82 VSLGFFDEIEIPKSLMMNNMNFDSTTPHGNYMLEYSNDEEPETTTKLYVLKGEAFAFKVN 141
Query: 57 SELFTETSPISCPDIHD----GAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPVRF 107
E+F ET P P + + G GS + GY + P+R+
Sbjct: 142 REIFEETGPKVAPKLVNAGNIGTSGSRGGAQDLIAPSGYKLQGSCDEEGTGPLRW 196
>gi|452990025|gb|EME89780.1| hypothetical protein MYCFIDRAFT_213792 [Pseudocercospora fijiensis
CIRAD86]
Length = 224
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQ---VWVWEFDN-EGDKHDLFMDPGDKIKFRVTS 57
+++ F+ED+++PPE L +++++ + +VW D+ EG ++ F D + R+
Sbjct: 99 LSVDFYEDLVVPPETLFDNTKWEQDDNGTWAYVWRADDGEGGVNEFFFDNAESCMVRIEE 158
Query: 58 ELFTETSP 65
E + + SP
Sbjct: 159 ESWNDISP 166
>gi|156098288|ref|XP_001615176.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax Sal-1]
gi|148804050|gb|EDL45449.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax]
Length = 186
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++++GFFE+I + L++P FD +++ W W F EG K F + I+ RV F
Sbjct: 98 IISIGFFENIRVNCANLREPKEFDMEKKEWYWTF--EGIK--FFYTKDELIRVRVLDTYF 153
Query: 61 TE 62
++
Sbjct: 154 SD 155
>gi|453089152|gb|EMF17192.1| DNA-directed RNA polymerase III 25 kd polypeptide [Mycosphaerella
populorum SO2202]
Length = 224
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 2 VTLGFFEDILIPPEGLQQPSRF---DEKEQVWVWEFDNEGDKHD-LFMDPGDKIKFRVTS 57
+++ FFED+L+PPE L + S + D +VW + G H+ F D + R+
Sbjct: 99 LSVDFFEDLLVPPETLFEGSTWEKDDSGTMTFVWRTEAGGGAHNEFFFDNAESCMVRIEE 158
Query: 58 ELFTETSP 65
E + + SP
Sbjct: 159 EQWHDVSP 166
>gi|367042650|ref|XP_003651705.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
gi|346998967|gb|AEO65369.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
Length = 199
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF++I +P L + S F+ E +WVW+ +++ ++ D + ++ +V SE + + +P
Sbjct: 103 FFDNIFVPWTELPEGSEFEPNENLWVWKEEDQV----MYFDNNEMVRVKVISEEWHDQTP 158
Query: 66 ISCPDIHDGA 75
+ + +GA
Sbjct: 159 LKPIETEEGA 168
>gi|357517543|ref|XP_003629060.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523082|gb|AET03536.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 187
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQV--WVWEFDNEGDKHDL 43
++LGFFEDI IP + PS + K W WE+ E D+ ++
Sbjct: 126 LSLGFFEDIYIPTHHMPYPSYYISKNNTRKWTWEYGEETDEFNI 169
>gi|302667367|ref|XP_003025270.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
gi|291189368|gb|EFE44659.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
Length = 253
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 24 DEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSPISCPDIHDG 74
D K+QVW+W+ G+ + D G+ ++FRV E + + P S PD+ DG
Sbjct: 157 DMKDQVWIWD---NGEGGIFYFDVGETVRFRVEQEEWHDQVP-SGPDLQDG 203
>gi|388579438|gb|EIM19762.1| hypothetical protein WALSEDRAFT_55467 [Wallemia sebi CBS 633.66]
Length = 223
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGD--------KHDLFMDPGDKIKF 53
++GFF+DI IP L +++D+ E + W + E D + ++D G+ I+
Sbjct: 99 ASVGFFDDIFIPIYNLPPITQYDKAESTFFWLANWEEDSDPFTSSPEQRAYIDIGENIRI 158
Query: 54 RVTSELFTETSP 65
R+ +E F P
Sbjct: 159 RIEAEHFENVYP 170
>gi|389583597|dbj|GAB66331.1| RNA polymerase Rpb7 N-terminal domain containing protein, partial
[Plasmodium cynomolgi strain B]
Length = 186
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++++GFFE+I + L++P FD +++ W W + EG K F + I+ RV F
Sbjct: 98 IISIGFFENIRVNCANLREPKEFDMEKKEWFWTY--EGIK--FFYTKDELIRVRVLDTYF 153
Query: 61 TE 62
++
Sbjct: 154 SD 155
>gi|403177922|ref|XP_003336364.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173264|gb|EFP91945.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 238
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDE--KEQVWVWEFDNE-------------GDKHDLFMD 46
V+L FF+DI IP LQ PS +D E W E+ + + L+M
Sbjct: 99 VSLKFFDDIHIPCRLLQSPSCYDPTLNEFFWASEYSDPEAASTMPADLLSISEDQRLYMQ 158
Query: 47 PGDKIKFRVTSELFTETSPISCPDIHDGAP 76
G I+ R+ E F + P P + P
Sbjct: 159 IGQPIRIRIEEEHFLDVGPKEAPKAANPTP 188
>gi|134116478|ref|XP_773193.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255814|gb|EAL18546.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 199
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW------------EFDNEGDKHDLFMDPGD 49
V+LGFF+DI I P L S +D +++ + W + N L++D G+
Sbjct: 70 VSLGFFQDIYIVPSLLPPNSAYDPQQKAFFWVAIDDESTLTQEQLLNTVISERLYIDLGE 129
Query: 50 KIKFRVTSELFTETSP 65
I+FRV S + + P
Sbjct: 130 AIRFRVDSIEWQDVRP 145
>gi|70953162|ref|XP_745700.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526105|emb|CAH77144.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 87
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 3 TLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTE 62
+LGFFE+I + L++P FD+++ W W + EG K F + I+ R+ F++
Sbjct: 1 SLGFFENIRVNRAYLKEPKAFDDEKNEWYWTY--EGIK--CFYTKNEPIRIRILETYFSD 56
Query: 63 TSPIS 67
+ ++
Sbjct: 57 PNELN 61
>gi|221055818|ref|XP_002259047.1| RNA polymerase Rpb7 [Plasmodium knowlesi strain H]
gi|193809118|emb|CAQ39820.1| RNA polymerase Rpb7, putative [Plasmodium knowlesi strain H]
Length = 186
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1 MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF 60
++++GFFE+I + L++P FD +++ W W + EG K F + I+ RV F
Sbjct: 98 IISIGFFENIRVNCANLKEPKEFDMEKKEWFWMY--EGIK--FFYTKDELIRVRVLDTYF 153
Query: 61 TE 62
++
Sbjct: 154 SD 155
>gi|359479579|ref|XP_002275475.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
vinifera]
Length = 177
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 2 VTLGFFEDI-----LIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
++LGFFED+ L+P +P+ + + +W+W DN+ K + D DKI+F+V
Sbjct: 84 LSLGFFEDVYRLVHLMPNPSRCEPNPYSRSQVIWIW--DNQEQKFPI--DGMDKIRFQVQ 139
Query: 57 S 57
S
Sbjct: 140 S 140
>gi|281208326|gb|EFA82502.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 267
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++LGFF+DI + L S + ++E++W W++++ + LF + +++F++ + +
Sbjct: 98 LSLGFFDDIQVLALDLPTQSFYHDEEKLWYWDWND----NQLFFEDRGRVRFKIDTVEWN 153
Query: 62 ETSPISCPDIHDGAPGSEVDTPKI 85
+ P P +++D +
Sbjct: 154 DAVSQPAPRPKSATPVNQMDASTL 177
>gi|390596833|gb|EIN06234.1| hypothetical protein PUNSTDRAFT_106452 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 226
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW-------EFDNEGDKHDL---------FM 45
V++GFF+DI IP L QPS FD E+ W H L ++
Sbjct: 99 VSVGFFDDIYIPVMYLPQPSAFDPNERAHFWLPPDPDEPDAPPPTAHSLLDSPVSSRMYI 158
Query: 46 DPGDKIKFRVTSELFTETSP 65
D G+ I+ RV ++ F + P
Sbjct: 159 DKGEVIRVRVEADDFFDDEP 178
>gi|423344452|ref|ZP_17322164.1| hypothetical protein HMPREF1077_03594 [Parabacteroides johnsonii
CL02T12C29]
gi|409212850|gb|EKN05884.1| hypothetical protein HMPREF1077_03594 [Parabacteroides johnsonii
CL02T12C29]
Length = 495
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 17 LQQPSRFDEKEQVWVWEFDNE--GDKHDLFMDPGDKIKFRVTSELFTETSPIS 67
L P F + WV EF+ + G H FM PGD I R+T ++ T S +S
Sbjct: 129 LNSPGNFTASKLAWVKEFEPQIFGQVHK-FMLPGDFIAMRMTGDIVTTVSGLS 180
>gi|218259763|ref|ZP_03475359.1| hypothetical protein PRABACTJOHN_01018 [Parabacteroides johnsonii
DSM 18315]
gi|218224921|gb|EEC97571.1| hypothetical protein PRABACTJOHN_01018 [Parabacteroides johnsonii
DSM 18315]
Length = 483
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 17 LQQPSRFDEKEQVWVWEFDNE--GDKHDLFMDPGDKIKFRVTSELFTETSPIS 67
L P F + WV EF+ + G H FM PGD I R+T ++ T S +S
Sbjct: 117 LNSPGNFTASKLAWVKEFEPQIFGQVHK-FMLPGDFIAMRMTGDIVTTVSGLS 168
>gi|414343962|ref|YP_006985483.1| peptidase [Gluconobacter oxydans H24]
gi|411029297|gb|AFW02552.1| peptidase [Gluconobacter oxydans H24]
Length = 182
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 77 GSEVDTPKIPYSYGYYSLAVLRTQLLSPVRFQHV 110
GS+ D IPY Y L +LR+Q+L P RF H
Sbjct: 10 GSKGDRHAIPYFKAAYRLELLRSQILGPERFDHA 43
>gi|323332723|gb|EGA74128.1| Rpc25p [Saccharomyces cerevisiae AWRI796]
Length = 107
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 11 LIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSPIS 67
IP L + + +E W+W D E L+ D +KI+FR+ E+F + P S
Sbjct: 4 FIPQNMLFEGCYYTPEESAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDVKPKS 57
>gi|402223542|gb|EJU03606.1| polymerase III polypeptide H [Dacryopinax sp. DJM-731 SS1]
Length = 238
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVW--EFDNEGDKHDL------FMDPGDKIKF 53
V+LGFF+DI +P L + +D ++QV+ W + + D D+ +D G KI+
Sbjct: 99 VSLGFFDDIHVPTRLLPPHTTWDPEDQVFFWAPQLSDGQDPLDIPKEERFTVDVGAKIRV 158
Query: 54 RVTSELFTETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRT 99
V + F E P P A V IP ++G A+ R
Sbjct: 159 CVDGDEFVEEEPSKGPIKRKAAAPGAVGVAGIPGTFGEEEEALRRA 204
>gi|302902820|ref|XP_003048726.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
gi|256729660|gb|EEU43013.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
Length = 199
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DI + E L + F Q+WVW D E L + + ++F+V E + + +P
Sbjct: 110 FFADIFVSYEYLPPGAEFSHSHQLWVWNVDEE---QRLLYEMHEMVRFQVIDEEWHDQAP 166
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,074,134,677
Number of Sequences: 23463169
Number of extensions: 85688972
Number of successful extensions: 145997
Number of sequences better than 100.0: 334
Number of HSP's better than 100.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 145588
Number of HSP's gapped (non-prelim): 338
length of query: 112
length of database: 8,064,228,071
effective HSP length: 80
effective length of query: 32
effective length of database: 6,187,174,551
effective search space: 197989585632
effective search space used: 197989585632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)