BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11391
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens
           GN=POLR3H PE=1 SV=1
          Length = 204

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 4/89 (4%)

Query: 2   VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
           V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E   HDL+MD G++I+FRV  E F 
Sbjct: 99  VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158

Query: 62  ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
           +TSP   P   D    SE + PK   PY+
Sbjct: 159 DTSPTG-PSSADATTSSE-ELPKKEAPYT 185


>sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus
           GN=Polr3h PE=2 SV=2
          Length = 204

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%)

Query: 2   VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
           V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E   HDL+MD G++I+FRV  E F 
Sbjct: 99  VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158

Query: 62  ETSP 65
           +TSP
Sbjct: 159 DTSP 162


>sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus
           GN=POLR3H PE=2 SV=1
          Length = 204

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 53/64 (82%)

Query: 2   VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
           V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E   HDL+MD G++++FRV  E F 
Sbjct: 99  VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158

Query: 62  ETSP 65
           +TSP
Sbjct: 159 DTSP 162


>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1
          Length = 203

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 2   VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE--GDKHDLFMDPGDKIKFRVTSEL 59
           VT+ FF+DI IP + L  P  F   E+ WVW+ + E   +  +L+ D  ++I+F++ SE 
Sbjct: 99  VTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158

Query: 60  FTETSP 65
           F + SP
Sbjct: 159 FVDISP 164


>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
           SV=1
          Length = 212

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 4   LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
           LG F+DI IP   L +   +  +E  W+W  D E     L+ D  +KI+FR+  E+F + 
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEE---TKLYFDVNEKIRFRIEREVFVDV 158

Query: 64  SPIS 67
            P S
Sbjct: 159 KPKS 162


>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
           discoideum GN=polr3h-1 PE=2 SV=1
          Length = 252

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 14/108 (12%)

Query: 2   VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
           ++LGFF +I + P  L  PS ++++E +W WE+    +++ LF + G +++F++    F 
Sbjct: 98  ISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW----NENQLFFEDGGRVRFKIDQVEFN 153

Query: 62  ETSPISCPDIHDGAPG-SEVDTPKI-PYSYGYYSLAVLRTQ-LLSPVR 106
                  P+I   AP    V+T  +  YS   Y    +  + LL  V+
Sbjct: 154 -------PEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVK 194


>sp|Q53R12|T4S20_HUMAN Transmembrane 4 L6 family member 20 OS=Homo sapiens GN=TM4SF20 PE=2
           SV=1
          Length = 229

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 6   FFEDILIPPEGLQQPSRFDEKEQVW---VWEFDNEGDKHDL 43
           FF D   PP G  +P+  D     W    + FD+E +KH L
Sbjct: 146 FFNDSCAPPTGFNKPTSNDTMASGWRASSFHFDSEENKHRL 186


>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
          Length = 4303

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 70   DIHDGAPGSEVDTPKIPYSY---GYYSLAVLRTQLLSPVRFQHVVT 112
            D  DG+PG + D P+  +SY   G Y + V  + L+S    Q  VT
Sbjct: 2095 DFGDGSPGQDTDEPRAEHSYLRPGDYRVQVNASNLVSFFVAQATVT 2140


>sp|A1WVQ4|ISPE_HALHL 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Halorhodospira
           halophila (strain DSM 244 / SL1) GN=ispE PE=3 SV=1
          Length = 288

 Score = 29.3 bits (64), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 34  FDNEGDKHDLFMDPGDKIKFRVTSELF------TETSPISCPDIHDGA 75
            D  G +  L +DPG  I    T+E+F       +TSPI+ PD+  GA
Sbjct: 161 VDPAGSRWYLVVDPGASIS---TAEVFGAPELTRDTSPITIPDLRAGA 205


>sp|Q7S747|EPL1_NEUCR Enhancer of polycomb-like protein 1 OS=Neurospora crassa (strain
           ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
           987) GN=epl-1 PE=3 SV=1
          Length = 589

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 4   LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHD----LFMDPGD--KIKFRVTS 57
           +G    + I   GL  P+R   +EQ   W++D   D  D      +DP D   +++R + 
Sbjct: 455 IGRLNRLWIDRRGLPSPARDLSEEQSDRWKYDQSSDDEDDAPVYMLDPFDTKALRYRASI 514

Query: 58  ELFTETSP 65
            L T T P
Sbjct: 515 PLQTVTRP 522


>sp|Q8MJZ7|LIRB5_PANTR Leukocyte immunoglobulin-like receptor subfamily B member 5
          OS=Pan troglodytes GN=LILRB5 PE=2 SV=1
          Length = 643

 Score = 28.9 bits (63), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 22 RFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSPISC 68
          R D++   W WE  N        ++PG K KF + S ++       C
Sbjct: 59 RLDKEGLPWAWERQNP-------LEPGAKAKFHILSTVYDSAGRYRC 98


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,886,763
Number of Sequences: 539616
Number of extensions: 2031656
Number of successful extensions: 3270
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3261
Number of HSP's gapped (non-prelim): 15
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)