Your job contains 1 sequence.
>psy11391
MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELF
TETSPISCPDIHDGAPGSEVDTPKIPYSYGYYSLAVLRTQLLSPVRFQHVVT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11391
(112 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040718-179 - symbol:polr3h "polymerase (RNA... 262 1.3e-22 1
UNIPROTKB|Q9Y535 - symbol:POLR3H "DNA-directed RNA polyme... 259 2.6e-22 1
MGI|MGI:1926179 - symbol:Polr3h "polymerase (RNA) III (DN... 259 2.6e-22 1
RGD|1305889 - symbol:Polr3h "polymerase (RNA) III (DNA di... 259 2.6e-22 1
UNIPROTKB|F1ML03 - symbol:POLR3H "DNA-directed RNA polyme... 256 5.5e-22 1
UNIPROTKB|Q2T9X1 - symbol:POLR3H "DNA-directed RNA polyme... 256 5.5e-22 1
UNIPROTKB|E2RRG9 - symbol:POLR3H "Uncharacterized protein... 255 7.0e-22 1
UNIPROTKB|F1SRD6 - symbol:POLR3H "Uncharacterized protein... 254 9.0e-22 1
FB|FBgn0036188 - symbol:CG7339 species:7227 "Drosophila m... 246 6.3e-21 1
UNIPROTKB|E1BV29 - symbol:POLR3H "Uncharacterized protein... 221 2.8e-18 1
ASPGD|ASPL0000045357 - symbol:AN1447 species:162425 "Emer... 160 8.2e-12 1
WB|WBGene00014111 - symbol:rpc-25 species:6239 "Caenorhab... 156 2.2e-11 1
POMBASE|SPBC2G5.07c - symbol:rpc25 "DNA-directed RNA poly... 129 1.6e-08 1
TAIR|locus:2033077 - symbol:AT1G06790 species:3702 "Arabi... 118 3.0e-07 1
SGD|S000001627 - symbol:RPC25 "RNA polymerase III subunit... 117 4.7e-07 1
CGD|CAL0005692 - symbol:orf19.443 species:5476 "Candida a... 113 9.6e-07 1
DICTYBASE|DDB_G0273523 - symbol:rpc25-2 "RNA polymerase I... 114 1.8e-06 1
DICTYBASE|DDB_G0273425 - symbol:rpc25-1 "RNA polymerase I... 114 1.8e-06 1
>ZFIN|ZDB-GENE-040718-179 [details] [associations]
symbol:polr3h "polymerase (RNA) III (DNA directed)
polypeptide H" species:7955 "Danio rerio" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
ZFIN:ZDB-GENE-040718-179 GO:GO:0003677 GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:BC076336
IPI:IPI00495469 RefSeq:NP_001002476.1 UniGene:Dr.78164
ProteinModelPortal:Q6DGK6 STRING:Q6DGK6 GeneID:436749
KEGG:dre:436749 InParanoid:Q6DGK6 NextBio:20831187
ArrayExpress:Q6DGK6 Uniprot:Q6DGK6
Length = 214
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ + HDL+MD G++I+FRVT E+F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETDEGTHDLYMDQGEEIRFRVTDEVFV 158
Query: 62 ETSPISCPDIHDGAPGS 78
+TSP S P APG+
Sbjct: 159 DTSP-SGPSADKEAPGT 174
>UNIPROTKB|Q9Y535 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IDA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=IDA;TAS] [GO:0006385 "transcription elongation from RNA
polymerase III promoter" evidence=TAS] [GO:0006386 "termination of
RNA polymerase III transcription" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] Reactome:REACT_71 InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0005813 GO:GO:0003677
EMBL:CH471095 GO:GO:0045087 GO:GO:0051607 EMBL:AL023553
InterPro:IPR012340 SUPFAM:SSF50249 Reactome:REACT_1788
GO:GO:0005666 GO:GO:0003899 GO:GO:0006386 GO:GO:0006385
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:AY092087
EMBL:AB051452 EMBL:CR456459 EMBL:BC017248 EMBL:BC088367
IPI:IPI00215871 IPI:IPI00289667 RefSeq:NP_001018060.1
RefSeq:NP_001018062.1 RefSeq:NP_612211.1 UniGene:Hs.712617
ProteinModelPortal:Q9Y535 SMR:Q9Y535 IntAct:Q9Y535 STRING:Q9Y535
DMDM:29428071 PaxDb:Q9Y535 PRIDE:Q9Y535 DNASU:171568
Ensembl:ENST00000337566 Ensembl:ENST00000355209
Ensembl:ENST00000396504 Ensembl:ENST00000407461 GeneID:171568
KEGG:hsa:171568 UCSC:uc003baf.3 UCSC:uc003bai.2
GeneCards:GC22M041921 HGNC:HGNC:30349 HPA:HPA046787
neXtProt:NX_Q9Y535 PharmGKB:PA134994174 InParanoid:Q9Y535
OMA:NVGLCIA PhylomeDB:Q9Y535 GenomeRNAi:171568 NextBio:89296
ArrayExpress:Q9Y535 Bgee:Q9Y535 CleanEx:HS_POLR3H
Genevestigator:Q9Y535 GermOnline:ENSG00000100413 Uniprot:Q9Y535
Length = 204
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 50/89 (56%), Positives = 63/89 (70%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P D SE + PK PY+
Sbjct: 159 DTSPTG-PSSADATTSSE-ELPKKEAPYT 185
>MGI|MGI:1926179 [details] [associations]
symbol:Polr3h "polymerase (RNA) III (DNA directed)
polypeptide H" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISO] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 MGI:MGI:1926179
GO:GO:0003677 GO:GO:0045087 GO:GO:0051607 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
EMBL:AK019868 EMBL:BC010793 IPI:IPI00187529 RefSeq:NP_084505.2
UniGene:Mm.215115 ProteinModelPortal:Q9D2C6 SMR:Q9D2C6
STRING:Q9D2C6 PaxDb:Q9D2C6 PRIDE:Q9D2C6 Ensembl:ENSMUST00000023113
GeneID:78929 KEGG:mmu:78929 UCSC:uc007wxr.1
GeneTree:ENSGT00390000004383 InParanoid:Q9D2C6 ChiTaRS:POLR3H
NextBio:349786 Bgee:Q9D2C6 CleanEx:MM_POLR3H Genevestigator:Q9D2C6
GermOnline:ENSMUSG00000022476 Uniprot:Q9D2C6
Length = 204
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 50/89 (56%), Positives = 64/89 (71%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P + A SE + PK PY+
Sbjct: 159 DTSPTG-PSSAEAASSSE-ELPKKEAPYT 185
>RGD|1305889 [details] [associations]
symbol:Polr3h "polymerase (RNA) III (DNA directed) polypeptide
H" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA;ISO] [GO:0005813 "centrosome"
evidence=IEA;ISO] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=ISO] [GO:0006383 "transcription from
RNA polymerase III promoter" evidence=IEA;ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 RGD:1305889 GO:GO:0003677
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 EMBL:CH473950
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
SUPFAM:SSF88798 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
KO:K03022 OrthoDB:EOG434W70 InterPro:IPR013238 Pfam:PF08292
TIGRFAMs:TIGR00448 OMA:NVGLCIA GeneTree:ENSGT00390000004383
EMBL:BC167088 IPI:IPI00210015 RefSeq:NP_001120767.1
UniGene:Rn.13037 SMR:B2RZB0 STRING:B2RZB0
Ensembl:ENSRNOT00000005943 GeneID:300088 KEGG:rno:300088
UCSC:RGD:1305889 NextBio:646311 Genevestigator:B2RZB0
Uniprot:B2RZB0
Length = 204
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 50/89 (56%), Positives = 64/89 (71%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P + A SE + PK PY+
Sbjct: 159 DTSPTG-PSSAEAASSSE-ELPKKEAPYT 185
>UNIPROTKB|F1ML03 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9913 "Bos taurus" [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798 IPI:IPI00711860
UniGene:Bt.55567 InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
OMA:NVGLCIA GeneTree:ENSGT00390000004383 EMBL:DAAA02014732
Ensembl:ENSBTAT00000006987 Uniprot:F1ML03
Length = 204
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P + A SE + PK PY+
Sbjct: 159 DTSPTG-PSSAEAASSSE-ELPKKEAPYT 185
>UNIPROTKB|Q2T9X1 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BC111227
IPI:IPI00711860 RefSeq:NP_001070430.1 UniGene:Bt.55567
ProteinModelPortal:Q2T9X1 STRING:Q2T9X1 GeneID:767843
KEGG:bta:767843 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
InParanoid:Q2T9X1 KO:K03022 OrthoDB:EOG434W70 NextBio:20918210
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 Uniprot:Q2T9X1
Length = 204
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P + A SE + PK PY+
Sbjct: 159 DTSPTG-PSSAEAASSSE-ELPKKEAPYT 185
>UNIPROTKB|E2RRG9 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006383 "transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AAEX03007296 RefSeq:XP_849136.1
ProteinModelPortal:E2RRG9 Ensembl:ENSCAFT00000001618 GeneID:607850
KEGG:cfa:607850 NextBio:20893547 Uniprot:E2RRG9
Length = 204
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 49/89 (55%), Positives = 63/89 (70%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++I+FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P + SE + PK PY+
Sbjct: 159 DTSPTG-PSSAEATSSSE-ELPKKEAPYT 185
>UNIPROTKB|F1SRD6 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:CU633382 RefSeq:XP_001929168.1
UniGene:Ssc.54915 Ensembl:ENSSSCT00000000069 GeneID:100157033
KEGG:ssc:100157033 Uniprot:F1SRD6
Length = 204
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 48/89 (53%), Positives = 64/89 (71%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V+LGFF+DILIPPE LQQP++FDE EQVWVWE++ E HDL+MD G++++FRV E F
Sbjct: 99 VSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFV 158
Query: 62 ETSPISCPDIHDGAPGSEVDTPK--IPYS 88
+TSP P + A SE + P+ PY+
Sbjct: 159 DTSPTG-PSSAEAASSSE-ELPRKEAPYT 185
>FB|FBgn0036188 [details] [associations]
symbol:CG7339 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR005576 Pfam:PF03876 EMBL:AE014296 GO:GO:0022008
GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AY118479 RefSeq:NP_648490.1
UniGene:Dm.11797 SMR:Q9VTL6 IntAct:Q9VTL6 STRING:Q9VTL6
EnsemblMetazoa:FBtr0076107 EnsemblMetazoa:FBtr0331530 GeneID:39310
KEGG:dme:Dmel_CG7339 UCSC:CG7339-RA FlyBase:FBgn0036188
InParanoid:Q9VTL6 OrthoDB:EOG4F4QT4 GenomeRNAi:39310 NextBio:812992
Uniprot:Q9VTL6
Length = 240
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 48/69 (69%), Positives = 53/69 (76%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKHDLFMDPGDKIKFRVTSELF 60
VTLGFF+DILIP LQ PSRFDE EQ WVWE+ E G KHDLFMD G+ IKFRV+ E+F
Sbjct: 99 VTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIF 158
Query: 61 TETSPISCP 69
ETSPI P
Sbjct: 159 EETSPIGPP 167
>UNIPROTKB|E1BV29 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 InterPro:IPR013238
Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AADN02006068 IPI:IPI00580368
Ensembl:ENSGALT00000019488 Uniprot:E1BV29
Length = 209
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 44/92 (47%), Positives = 59/92 (64%)
Query: 2 VTLGFFEDILIPPEGLQQPS---RFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSE 58
V++GFF+DI+IPPE LQQP+ DE EQVWVWE++ E HDL+MD G++I+FRV E
Sbjct: 99 VSIGFFDDIVIPPESLQQPALGVASDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDE 158
Query: 59 LFTETSPI--SCPDIHDGAPGSEVDTPKIPYS 88
F +TSP S + EV + PY+
Sbjct: 159 TFVDTSPTGPSSAEASTSNATEEVQKKEAPYT 190
>ASPGD|ASPL0000045357 [details] [associations]
symbol:AN1447 species:162425 "Emericella nidulans"
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] InterPro:IPR005576 Pfam:PF03876 EMBL:BN001307
GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACD01000022
GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238 Pfam:PF08292
OMA:NVGLCIA OrthoDB:EOG4NCQP8 RefSeq:XP_659051.1
ProteinModelPortal:Q5BDD3 STRING:Q5BDD3
EnsemblFungi:CADANIAT00008060 GeneID:2875482 KEGG:ani:AN1447.2
Uniprot:Q5BDD3
Length = 208
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 6 FFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSP 65
FF DIL+PP+ L +RFD ++QVW+WE + EG + D G+ ++FRV E + + P
Sbjct: 103 FFNDILVPPDLLLDGARFDYQDQVWIWE-NEEGT---FYFDVGEVVRFRVEMEEWHDQIP 158
Query: 66 ISCPDIHDGAPGSEVDTPKIPYS 88
+ PD+ DGAP +D K PYS
Sbjct: 159 -NAPDLGDGAP---IDR-KPPYS 176
>WB|WBGene00014111 [details] [associations]
symbol:rpc-25 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR005576
Pfam:PF03876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0006351
GO:GO:0040035 InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967
SMART:SM00316 GO:GO:0003899 EMBL:Z70783 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 PIR:T28049 RefSeq:NP_505625.1
ProteinModelPortal:Q23645 SMR:Q23645 STRING:Q23645 PaxDb:Q23645
EnsemblMetazoa:ZK856.10 GeneID:179418 KEGG:cel:CELE_ZK856.10
UCSC:ZK856.10 CTD:179418 WormBase:ZK856.10 InParanoid:Q23645
NextBio:905302 Uniprot:Q23645
Length = 239
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNE-GDKH-DLFMDPGDKIKFRVTSEL 59
+T+ FFEDI +P E L +P F+E+ QVW WE+ E G+ L+MDPG ++FRVT +
Sbjct: 99 LTIQFFEDIFVPAEKLPEPHVFEEEGQVWYWEYAQEDGEPPAKLYMDPGKIVRFRVTEII 158
Query: 60 FTETSP 65
F + P
Sbjct: 159 FKDLKP 164
>POMBASE|SPBC2G5.07c [details] [associations]
symbol:rpc25 "DNA-directed RNA polymerase III complex
subunit Rpc25" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=IMP] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
PomBase:SPBC2G5.07c GO:GO:0005829 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
SUPFAM:SSF88798 GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
EMBL:DQ156221 PIR:T40164 RefSeq:NP_596068.1 PDB:3AYH PDBsum:3AYH
ProteinModelPortal:O94285 STRING:O94285 EnsemblFungi:SPBC2G5.07c.1
GeneID:2540510 KEGG:spo:SPBC2G5.07c OrthoDB:EOG4NCQP8
NextBio:20801637 Uniprot:O94285
Length = 203
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKH--DLFMDPGDKIKFRVTSEL 59
VT+ FF+DI IP + L P F E+ WVW+ + E +L+ D ++I+F++ SE
Sbjct: 99 VTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158
Query: 60 FTETSP 65
F + SP
Sbjct: 159 FVDISP 164
>TAIR|locus:2033077 [details] [associations]
symbol:AT1G06790 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899
UniGene:At.26438 UniGene:At.48160 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA EMBL:AY065288
EMBL:AY142661 IPI:IPI00527075 PIR:G86202 RefSeq:NP_172164.1
ProteinModelPortal:Q9M9Y6 SMR:Q9M9Y6 IntAct:Q9M9Y6 STRING:Q9M9Y6
PaxDb:Q9M9Y6 PRIDE:Q9M9Y6 DNASU:837190 EnsemblPlants:AT1G06790.1
GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6
PhylomeDB:Q9M9Y6 ProtClustDB:CLSN2682503 ArrayExpress:Q9M9Y6
Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6
Length = 204
Score = 118 (46.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 2 VTLGFFEDILIPPEGLQQPSR-----FDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVT 56
+TLGFF+DI +P + +P+R ++ K+ +WVWE+ K D +D +IKFRV
Sbjct: 99 LTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP--KEDYIVDDACQIKFRVE 156
Query: 57 SELFTETSPISCPDIHDGAP 76
S + D AP
Sbjct: 157 SISYPSVPTERAEDAKPFAP 176
>SGD|S000001627 [details] [associations]
symbol:RPC25 "RNA polymerase III subunit C25" species:4932
"Saccharomyces cerevisiae" [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 SGD:S000001627 GO:GO:0003677
EMBL:BK006944 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 EMBL:Z25464 Reactome:REACT_87991
GO:GO:0042797 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238
Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 OrthoDB:EOG4NCQP8 EMBL:U11048
EMBL:Z28144 PIR:S37973 RefSeq:NP_012778.1 PDB:2CKZ PDBsum:2CKZ
ProteinModelPortal:P35718 SMR:P35718 DIP:DIP-1414N IntAct:P35718
MINT:MINT-399757 STRING:P35718 PaxDb:P35718 EnsemblFungi:YKL144C
GeneID:853713 KEGG:sce:YKL144C CYGD:YKL144c
EvolutionaryTrace:P35718 NextBio:974722 Genevestigator:P35718
GermOnline:YKL144C Uniprot:P35718
Length = 212
Score = 117 (46.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 4 LGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTET 63
LG F+DI IP L + + +E W+W D E L+ D +KI+FR+ E+F +
Sbjct: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETK---LYFDVNEKIRFRIEREVFVDV 158
Query: 64 SPIS 67
P S
Sbjct: 159 KPKS 162
>CGD|CAL0005692 [details] [associations]
symbol:orf19.443 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006384 "transcription initiation
from RNA polymerase III promoter" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 CGD:CAL0005692
GO:GO:0003677 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003899 EMBL:AACQ01000078 EMBL:AACQ01000077 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
RefSeq:XP_715878.1 RefSeq:XP_715928.1 ProteinModelPortal:Q5A298
SMR:Q5A298 STRING:Q5A298 GeneID:3642414 GeneID:3642463
KEGG:cal:CaO19.443 KEGG:cal:CaO19.8073 Uniprot:Q5A298
Length = 195
Score = 113 (44.8 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
V + FF++I IP + L + ++ E EQ W++ D +++LF+D +KI+FRV E F
Sbjct: 99 VRMEFFDEIWIPKDFLFENCKYSESEQAWIYLLD----ENELFIDVNEKIRFRVEEENFY 154
Query: 62 ETSP 65
P
Sbjct: 155 NVKP 158
>DICTYBASE|DDB_G0273523 [details] [associations]
symbol:rpc25-2 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 114 (45.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/108 (29%), Positives = 56/108 (51%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++LGFF +I + P L PS ++++E +W WE+ NE + LF + G +++F++ F
Sbjct: 98 ISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW-NE---NQLFFEDGGRVRFKIDQVEFN 153
Query: 62 ETSPISCPDIHDGAPGSE-VDTPKIP-YSYGYYSLAVLRTQ-LLSPVR 106
P+I AP + V+T + YS Y + + LL V+
Sbjct: 154 -------PEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVK 194
>DICTYBASE|DDB_G0273425 [details] [associations]
symbol:rpc25-1 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 114 (45.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/108 (29%), Positives = 56/108 (51%)
Query: 2 VTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFT 61
++LGFF +I + P L PS ++++E +W WE+ NE + LF + G +++F++ F
Sbjct: 98 ISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW-NE---NQLFFEDGGRVRFKIDQVEFN 153
Query: 62 ETSPISCPDIHDGAPGSE-VDTPKIP-YSYGYYSLAVLRTQ-LLSPVR 106
P+I AP + V+T + YS Y + + LL V+
Sbjct: 154 -------PEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVK 194
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.140 0.438 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 112 112 0.00091 102 3 11 22 0.48 30
29 0.43 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 580 (62 KB)
Total size of DFA: 136 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.30u 0.08s 13.38t Elapsed: 00:00:01
Total cpu time: 13.31u 0.08s 13.39t Elapsed: 00:00:01
Start: Thu Aug 15 13:25:29 2013 End: Thu Aug 15 13:25:30 2013