RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11391
         (112 letters)



>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 94

 Score = 32.6 bits (74), Expect = 0.002
 Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 1  MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTS 57
             +G      I    +     FD       ++        D+ +   D+I+ ++  
Sbjct: 21 FTEIGPMSCF-ISRHSIPSEMEFDPNSNPPCYK----TMDEDIVIQQDDEIRLKIVG 72


>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 91

 Score = 28.3 bits (63), Expect = 0.076
 Identities = 5/57 (8%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 1  MVTLGFFEDILIPPEGLQQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTS 57
           V +G    + +    + Q   F+       ++        +  +    +I+ ++  
Sbjct: 20 EVQVGPM-KVFVTKHLMPQDLTFNAGSNPPSYQ------SSEDVITIKSRIRVKIEG 69


>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085
          {Legionella pneumophila [TaxId: 446]}
          Length = 141

 Score = 26.1 bits (57), Expect = 0.70
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 4  LGFFEDILIPPEGLQQPSRFDEKEQ------VWVWEFDNEGDKHDLFMDPGDKIKFRVTS 57
           G+ E   +  + L   ++ D   +      V + E + +G  +  F  P     +    
Sbjct: 2  YGYVEKATLIDQNLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEG 61

Query: 58 ELFTE 62
          E   +
Sbjct: 62 EYVGK 66


>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
           5664]}
          Length = 475

 Score = 25.9 bits (56), Expect = 1.3
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 47  PGDKIKFRVTSELFTETSPISCPDIHD 73
           PG +++    S  F     I+CP   +
Sbjct: 438 PGLRVELSTVSNAFEGGGYITCPPYVE 464


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
          [TaxId: 10298]}
          Length = 615

 Score = 24.0 bits (52), Expect = 5.3
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)

Query: 53 FRV-----TSELFTETSPISCPDIHDGAPGSE 79
          F V      + +     P  CP   +G   +E
Sbjct: 3  FYVCPPPTGATVVQFEQPRRCPTRPEGQNYTE 34


>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 153

 Score = 23.2 bits (49), Expect = 8.8
 Identities = 11/75 (14%), Positives = 21/75 (28%)

Query: 18  QQPSRFDEKEQVWVWEFDNEGDKHDLFMDPGDKIKFRVTSELFTETSPISCPDIHDGAPG 77
           ++  + DE   +    FD       + +  GD ++  + +                GA G
Sbjct: 39  EKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALG 98

Query: 78  SEVDTPKIPYSYGYY 92
               T   P      
Sbjct: 99  GGGLTLINPGEKVVL 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 457,525
Number of extensions: 20013
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 14
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)