BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11392
(169 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|260824541|ref|XP_002607226.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
gi|229292572|gb|EEN63236.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
Length = 203
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 62/80 (77%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+VI + KV NVGLC+ L+DITK+EDS I PGDGASHT+V FRYVVFRPF
Sbjct: 21 KLNDAVIEELNNKFANKVVYNVGLCIALFDITKLEDSFIFPGDGASHTRVHFRYVVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+ G+IRSCS+EGVH S
Sbjct: 81 MDEILQGRIRSCSREGVHVS 100
>gi|91092914|ref|XP_971430.1| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa
polypeptide [Tribolium castaneum]
gi|270003098|gb|EEZ99545.1| hypothetical protein TcasGA2_TC000127 [Tribolium castaneum]
Length = 199
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV NVGLC+ LYDIT +++S I PGDGASHT+V FRY+VFRPF
Sbjct: 21 KLNDAIAGELNKKLANKVVLNVGLCIALYDITSLQESFIFPGDGASHTRVSFRYIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI++GKIRSCS+EGVH
Sbjct: 81 IEEILVGKIRSCSQEGVH 98
>gi|291243945|ref|XP_002741858.1| PREDICTED: hypothetical protein isoform 1 [Saccoglossus
kowalevskii]
Length = 204
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 61/80 (76%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV NVGLC+ L+DITK+EDS + PGDGASHTKV FRY+VFRPF
Sbjct: 21 KLNDAIAEELNKKLANKVVHNVGLCIALHDITKLEDSYLFPGDGASHTKVCFRYIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI IGKIRSCS++GVH S
Sbjct: 81 LDEIFIGKIRSCSRDGVHVS 100
>gi|118404162|ref|NP_001072397.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Xenopus
(Silurana) tropicalis]
gi|111306182|gb|AAI21598.1| hypothetical protein MGC147203 [Xenopus (Silurana) tropicalis]
Length = 207
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 61/80 (76%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK++DS I PGDGASHTKV+FRYVVFRPF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKMDDSYIFPGDGASHTKVQFRYVVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI++GKI+ CS EGVH S
Sbjct: 81 LDEILMGKIKGCSPEGVHVS 100
>gi|224095057|ref|XP_002197392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Taeniopygia guttata]
Length = 206
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 55/65 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI+IG+I+SCS++
Sbjct: 36 NKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILIGQIKSCSQD 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|48096324|ref|XP_394665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis mellifera]
Length = 203
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV+ NVGLC+ L+DITKIE+S I PGDGASHTKV FRY+VFRPF
Sbjct: 21 KLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFRYIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI+IGKIRSCS +GVH
Sbjct: 81 MEEILIGKIRSCSIDGVH 98
>gi|47206295|emb|CAF93183.1| unnamed protein product [Tetraodon nigroviridis]
Length = 251
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 53/63 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI+IGKI+ CS+E
Sbjct: 36 NKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLEEILIGKIKYCSQE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|380018290|ref|XP_003693065.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis florea]
Length = 203
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV+ NVGLC+ L+DITKIE+S I PGDGASHTKV FRY+VFRPF
Sbjct: 21 KLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFRYIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI+IGKIRSCS +GVH
Sbjct: 81 MEEILIGKIRSCSIDGVH 98
>gi|344296182|ref|XP_003419788.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Loxodonta africana]
Length = 204
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 60/80 (75%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVFRPF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ E++IGKI+ CS EGVH S
Sbjct: 81 LDEVLIGKIKGCSPEGVHVS 100
>gi|383853110|ref|XP_003702067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Megachile rotundata]
Length = 204
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V + KV+ NVGLC+ L+DITKIE+S I PGDGASHTKV FR++VFRPF
Sbjct: 21 KLNDAVTDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFRFIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI+IGKIRSCS +GVH
Sbjct: 81 MEEILIGKIRSCSVDGVH 98
>gi|449283297|gb|EMC89974.1| DNA-directed RNA polymerase III subunit RPC8 [Columba livia]
Length = 206
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 55/65 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI+IG+I+SCS++
Sbjct: 36 NKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILIGQIKSCSQD 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|72021379|ref|XP_796543.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
gi|72148305|ref|XP_795389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
Length = 203
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 55/65 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV PNVGLC+ L+DI K+EDS I PGDGASHTKV FR+VVF PF+ EI+IG+IRSCS++
Sbjct: 36 NKVVPNVGLCIALHDIVKMEDSHIFPGDGASHTKVHFRFVVFHPFMDEILIGRIRSCSRD 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHIS 100
>gi|118082710|ref|XP_416229.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Gallus
gallus]
gi|326912007|ref|XP_003202346.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Meleagris gallopavo]
Length = 206
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 55/65 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI++G+I+SCS++
Sbjct: 36 NKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILVGEIKSCSQD 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|332376875|gb|AEE63577.1| unknown [Dendroctonus ponderosae]
Length = 215
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 61/78 (78%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ ++V I + KV NVGLC+ L+DIT +++S IIPGDGASHT V FRYVVFRPF
Sbjct: 35 KLNNAVEIELNKKLANKVVLNVGLCIALFDITSLKESFIIPGDGASHTIVHFRYVVFRPF 94
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI++GKIRSCS+EGVH
Sbjct: 95 MEEILVGKIRSCSQEGVH 112
>gi|50540012|ref|NP_001002476.1| DNA-directed RNA polymerase III subunit RPC8 [Danio rerio]
gi|49903087|gb|AAH76336.1| Zgc:92878 [Danio rerio]
Length = 214
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 53/65 (81%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI++GKI+ CS E
Sbjct: 36 NKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILLGKIKGCSAE 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|417414291|gb|JAA53443.1| Putative dna-directed rna polymerase iii subunit rpc8, partial
[Desmodus rotundus]
Length = 192
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+EDS + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDSYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|332022469|gb|EGI62776.1| DNA-directed RNA polymerase III subunit RPC8 [Acromyrmex
echinatior]
Length = 205
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 55/63 (87%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV+ +VGLC+ L+D+TKIE+S I PGDGASHTKV FR++VFRP++ EI+IGKIRSCS E
Sbjct: 36 NKVYKDVGLCITLHDVTKIEESYIFPGDGASHTKVTFRFIVFRPWMEEILIGKIRSCSPE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|241570289|ref|XP_002402677.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215502059|gb|EEC11553.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|442750295|gb|JAA67307.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 200
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L+D+TKIEDS I+PGDG+ HT VEFRYVVFRPF+ E+++GKIRSCS+E
Sbjct: 36 NKVVINVGLCIALFDVTKIEDSKILPGDGSFHTTVEFRYVVFRPFMDEVLVGKIRSCSQE 95
Query: 82 GVHDS 86
GV+ S
Sbjct: 96 GVYVS 100
>gi|403282911|ref|XP_003932877.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Saimiri
boliviensis boliviensis]
Length = 204
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|431900039|gb|ELK07974.1| DNA-directed RNA polymerase III subunit RPC8 [Pteropus alecto]
Length = 204
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|432870759|ref|XP_004071834.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Oryzias latipes]
Length = 214
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 53/63 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FR+VVF PF+ EI++GKI+ CS+E
Sbjct: 36 NKVVFNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRFVVFHPFLEEILVGKIKYCSQE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|322790751|gb|EFZ15495.1| hypothetical protein SINV_12920 [Solenopsis invicta]
Length = 145
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 55/63 (87%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV+ +VGLC+ L+DITKIE+S I PGDGASHTKV FR++VFRP++ EI+IGKIRSCS E
Sbjct: 36 NKVYKDVGLCITLHDITKIEESYIFPGDGASHTKVTFRFIVFRPWMEEILIGKIRSCSPE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|332231333|ref|XP_003264851.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Nomascus leucogenys]
gi|441617712|ref|XP_004088468.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nomascus
leucogenys]
Length = 204
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|301787829|ref|XP_002929328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Ailuropoda melanoleuca]
Length = 204
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|327272738|ref|XP_003221141.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Anolis carolinensis]
Length = 206
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDAITEELNKKLANKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI++G+I+ CS EGVH S
Sbjct: 81 LDEILVGEIKGCSLEGVHVS 100
>gi|281340938|gb|EFB16522.1| hypothetical protein PANDA_019485 [Ailuropoda melanoleuca]
Length = 192
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|388453623|ref|NP_001253541.1| DNA-directed RNA polymerase III subunit RPC8 [Macaca mulatta]
gi|402884366|ref|XP_003905657.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Papio
anubis]
gi|90077470|dbj|BAE88415.1| unnamed protein product [Macaca fascicularis]
gi|355563711|gb|EHH20273.1| hypothetical protein EGK_03090 [Macaca mulatta]
gi|355785028|gb|EHH65879.1| hypothetical protein EGM_02735 [Macaca fascicularis]
gi|380810200|gb|AFE76975.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|383416259|gb|AFH31343.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|384945610|gb|AFI36410.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
Length = 204
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|390458879|ref|XP_002743853.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Callithrix
jacchus]
Length = 273
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 90 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 149
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 150 LDEILIGKIKGCSPEGVHVS 169
>gi|348569566|ref|XP_003470569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Cavia
porcellus]
Length = 204
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DIT++EDS + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITRLEDSYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|410925771|ref|XP_003976353.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Takifugu rubripes]
Length = 215
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYD+TK+EDS I PGDGASHTKV FRYVVF PF+ EI+ GKI+ CS+E
Sbjct: 36 NKVVYNVGLCICLYDVTKLEDSYIFPGDGASHTKVHFRYVVFHPFLEEILTGKIKYCSQE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|426225828|ref|XP_004007063.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Ovis aries]
Length = 204
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|355712777|gb|AES04462.1| polymerase III polypeptide H [Mustela putorius furo]
Length = 203
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|348511267|ref|XP_003443166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Oreochromis niloticus]
Length = 214
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI+IGKI+ CS+E
Sbjct: 36 NKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILIGKIKYCSQE 95
Query: 82 GVH 84
GV+
Sbjct: 96 GVY 98
>gi|27229271|ref|NP_084505.2| DNA-directed RNA polymerase III subunit RPC8 [Mus musculus]
gi|187937020|ref|NP_001120767.1| DNA-directed RNA polymerase III subunit RPC8 [Rattus norvegicus]
gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
AltName: Full=DNA-directed RNA polymerase III subunit H;
AltName: Full=RNA polymerase III subunit C7
gi|14789799|gb|AAH10793.1| Polymerase (RNA) III (DNA directed) polypeptide H [Mus musculus]
gi|26387053|dbj|BAB31893.2| unnamed protein product [Mus musculus]
gi|148672603|gb|EDL04550.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_d
[Mus musculus]
gi|149065818|gb|EDM15691.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065819|gb|EDM15692.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065820|gb|EDM15693.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065822|gb|EDM15695.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|187469207|gb|AAI67088.1| Polr3h protein [Rattus norvegicus]
Length = 204
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|296486979|tpg|DAA29092.1| TPA: DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|440893626|gb|ELR46323.1| DNA-directed RNA polymerase III subunit RPC8 [Bos grunniens mutus]
Length = 204
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|149065821|gb|EDM15694.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 177
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|194037188|ref|XP_001929168.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Sus scrofa]
Length = 204
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|148672601|gb|EDL04548.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_b
[Mus musculus]
Length = 189
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|410965705|ref|XP_003989382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Felis catus]
Length = 204
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|307202151|gb|EFN81651.1| DNA-directed RNA polymerase III subunit RPC8 [Harpegnathos
saltator]
Length = 200
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV+ NVGLC+MLYDITKIE+S + PGDGASHT V FR+VVFRPF+ EI+IGK R CS +
Sbjct: 36 NKVYVNVGLCIMLYDITKIEESHVFPGDGASHTNVSFRFVVFRPFMEEILIGKTRFCSAD 95
Query: 82 GVH 84
G+H
Sbjct: 96 GIH 98
>gi|149743078|ref|XP_001502570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Equus caballus]
Length = 204
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|74220193|dbj|BAE31279.1| unnamed protein product [Mus musculus]
Length = 204
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|350396628|ref|XP_003484613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Bombus impatiens]
Length = 203
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV+ +VGLC+ L+DITKIE+S I PGDGASHTKV FR++VFRPF
Sbjct: 21 KLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIFPGDGASHTKVVFRFIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI+IGKIRSCS +GVH
Sbjct: 81 MEEILIGKIRSCSVDGVH 98
>gi|340716162|ref|XP_003396570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Bombus terrestris]
Length = 203
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D++ + KV+ +VGLC+ L+DITKIE+S I PGDGASHTKV FR++VFRPF
Sbjct: 21 KLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIFPGDGASHTKVVFRFIVFRPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI+IGKIRSCS +GVH
Sbjct: 81 MEEILIGKIRSCSVDGVH 98
>gi|395820252|ref|XP_003783487.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Otolemur
garnettii]
Length = 361
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 178 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 237
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 238 LDEILIGKIKGCSPEGVHVS 257
>gi|47189269|emb|CAF87239.1| unnamed protein product [Tetraodon nigroviridis]
Length = 119
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+V NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI+IGKI+ CS+EG
Sbjct: 1 QVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLEEILIGKIKYCSQEG 60
Query: 83 VH 84
VH
Sbjct: 61 VH 62
>gi|213512140|ref|NP_001134466.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
gi|209733538|gb|ACI67638.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
Length = 208
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV VGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI++GKI+ CS+E
Sbjct: 36 NKVVYQVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILVGKIKYCSQE 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|116004145|ref|NP_001070430.1| DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
III subunit H
gi|83405434|gb|AAI11228.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Bos
taurus]
Length = 204
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|345311139|ref|XP_003429062.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC8-like, partial [Ornithorhynchus anatinus]
Length = 190
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITK+ED+ I PGDGASHTKV FRYVVF PF+ EI+IG+I+ CS E
Sbjct: 22 NKVVYNVGLCICLYDITKLEDAYIFPGDGASHTKVHFRYVVFHPFLDEILIGEIKGCSPE 81
Query: 82 GVHDS 86
GVH S
Sbjct: 82 GVHVS 86
>gi|149065823|gb|EDM15696.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 196
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
T+V NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF+ EI+IGKI+ CS E
Sbjct: 28 TEVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPE 87
Query: 82 GVHDS 86
GVH S
Sbjct: 88 GVHVS 92
>gi|444723804|gb|ELW64434.1| DNA-directed RNA polymerase III subunit RPC8 [Tupaia chinensis]
Length = 201
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 58/78 (74%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV +VGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYSVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
+ EI+IGKIR CS EGVH
Sbjct: 81 LDEILIGKIRGCSPEGVH 98
>gi|346470681|gb|AEO35185.1| hypothetical protein [Amblyomma maculatum]
Length = 198
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L+DIT+IEDS I+PGDG+ HT V+FRYVVFRPF+ E+++GKIRSCS+E
Sbjct: 36 NKVVINVGLCIALFDITRIEDSKILPGDGSFHTTVQFRYVVFRPFMDEVLVGKIRSCSQE 95
Query: 82 GVHDS 86
GV+ S
Sbjct: 96 GVYVS 100
>gi|148672604|gb|EDL04551.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_e
[Mus musculus]
Length = 118
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|157130759|ref|XP_001661998.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes
aegypti]
gi|108871791|gb|EAT36016.1| AAEL011866-PA [Aedes aegypti]
Length = 231
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L DI K+ DS+I+PGDGASHT+V FRY+VFRP V ++I GKIRSCS+E
Sbjct: 36 NKVLLNVGLCITLKDIIKLGDSIILPGDGASHTEVNFRYIVFRPMVGDVITGKIRSCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|307185496|gb|EFN71480.1| DNA-directed RNA polymerase III subunit RPC8 [Camponotus
floridanus]
Length = 204
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 55/63 (87%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV+ +VGLC++L+DITKIE+S I PGDGASHTKV FR++VFRP++ EI+IGK+RS S E
Sbjct: 36 NKVYKDVGLCIVLHDITKIEESYIFPGDGASHTKVTFRFIVFRPWIEEILIGKVRSSSSE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|443730027|gb|ELU15722.1| hypothetical protein CAPTEDRAFT_156703 [Capitella teleta]
Length = 208
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L+DIT+I DS I PGDG+SHT V+FRYVVFRPF+ EI++GKIRS SKE
Sbjct: 36 NKVVHNVGLCISLWDITEIADSYIFPGDGSSHTIVKFRYVVFRPFMDEILVGKIRSSSKE 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|351708339|gb|EHB11258.1| DNA-directed RNA polymerase III subunit RPC8 [Heterocephalus
glaber]
Length = 204
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +VGLC+ L+DIT++EDS + PGDGASHTKV FRYVVF PF+ EI+IGKI+ CS E
Sbjct: 36 NKVLYSVGLCICLFDITRLEDSYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSSE 95
Query: 82 GVHDS 86
GVH S
Sbjct: 96 GVHVS 100
>gi|118792599|ref|XP_320407.3| AGAP012122-PA [Anopheles gambiae str. PEST]
gi|116116974|gb|EAA00210.3| AGAP012122-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 52/63 (82%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L DI K+ DS+I+PGDGASHT+V FRY+VFRP + ++I GKIRSCS+E
Sbjct: 36 NKVLLNVGLCIALKDIVKLGDSIILPGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|395540688|ref|XP_003772284.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8
[Sarcophilus harrisii]
Length = 204
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 58/80 (72%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ LYDITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLYDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IG I+ CS +GVH S
Sbjct: 81 LDEILIGVIKGCSPDGVHVS 100
>gi|170043715|ref|XP_001849521.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
gi|167867047|gb|EDS30430.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
Length = 239
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 52/63 (82%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L DI K+ DS+I+PGDGASHT+V FRY+VFRP + ++I GKIRSCS+E
Sbjct: 36 NKVLLNVGLCIALKDIVKLGDSIILPGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|427786869|gb|JAA58886.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 198
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 55/65 (84%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ LYDITKIEDS I+PGDG+ HT V+FRYVVFRPF+ E++IGKIRS S+E
Sbjct: 36 NKVVINVGLCIALYDITKIEDSRILPGDGSFHTTVQFRYVVFRPFMDEVLIGKIRSSSQE 95
Query: 82 GVHDS 86
G++ S
Sbjct: 96 GIYVS 100
>gi|13359203|dbj|BAB33335.1| KIAA1665 protein [Homo sapiens]
Length = 217
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 58/80 (72%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FR VVF PF
Sbjct: 34 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPF 93
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 94 LDEILIGKIKGCSPEGVHVS 113
>gi|24475814|ref|NP_612211.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|65301161|ref|NP_001018060.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|332859900|ref|XP_001169430.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan troglodytes]
gi|397487166|ref|XP_003814678.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan paniscus]
gi|397487168|ref|XP_003814679.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan paniscus]
gi|426394612|ref|XP_004063585.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Gorilla gorilla gorilla]
gi|426394614|ref|XP_004063586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Gorilla gorilla gorilla]
gi|29428071|sp|Q9Y535.1|RPC8_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H; AltName:
Full=RNA polymerase III subunit 22.9 kDa subunit;
Short=RPC22.9
gi|24429623|gb|AAM18217.1| RNA polymerase III subunit RPC8 [Homo sapiens]
gi|47678449|emb|CAG30345.1| dJ347H13.5 [Homo sapiens]
gi|56789518|gb|AAH88367.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|109451158|emb|CAK54440.1| POLR3H [synthetic construct]
gi|109451736|emb|CAK54739.1| POLR3H [synthetic construct]
gi|119580841|gb|EAW60437.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580843|gb|EAW60439.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580844|gb|EAW60440.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580845|gb|EAW60441.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|168270638|dbj|BAG10112.1| DNA-directed RNA polymerase III subunit RPC8 [synthetic construct]
gi|254071291|gb|ACT64405.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|254071293|gb|ACT64406.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|410227528|gb|JAA10983.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410257006|gb|JAA16470.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410300726|gb|JAA28963.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410352625|gb|JAA42916.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
Length = 204
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 58/80 (72%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FR VVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|342905869|gb|AEL79218.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Rhodnius
prolixus]
Length = 130
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 54/63 (85%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GLC++L+DI ++DS + PGDG +HTKVEFR+VVFRPF+ E+I+GKI++C+KE
Sbjct: 36 NKVVKNIGLCVVLFDIESMDDSFLFPGDGGAHTKVEFRFVVFRPFIEEVIVGKIKNCTKE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|73968962|ref|XP_849136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Canis lupus familiaris]
Length = 204
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV +VGLC+ L+DIT++ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IG+I+ CS EGVH S
Sbjct: 81 LDEILIGRIKGCSPEGVHVS 100
>gi|297706308|ref|XP_002829986.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Pongo abelii]
Length = 204
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 57/80 (71%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDG SHTKV F YVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGTSHTKVHFPYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>gi|312382991|gb|EFR28239.1| hypothetical protein AND_04066 [Anopheles darlingi]
Length = 249
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L DI K+ S+I+PGDGASHT+V FRY+VFRP V ++I GKIRSCS+E
Sbjct: 36 NKVLLNVGLCIALKDIVKLGHSIILPGDGASHTEVHFRYIVFRPMVGDVITGKIRSCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|195326872|ref|XP_002030149.1| GM25288 [Drosophila sechellia]
gi|195589569|ref|XP_002084524.1| GD14319 [Drosophila simulans]
gi|194119092|gb|EDW41135.1| GM25288 [Drosophila sechellia]
gi|194196533|gb|EDX10109.1| GD14319 [Drosophila simulans]
Length = 240
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L DI ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V +I GKIR+CS+EGVH
Sbjct: 81 VGTVITGKIRNCSREGVH 98
>gi|195493530|ref|XP_002094458.1| GE21834 [Drosophila yakuba]
gi|194180559|gb|EDW94170.1| GE21834 [Drosophila yakuba]
Length = 240
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L DI ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V +I GKIR+CS+EGVH
Sbjct: 81 VGTVITGKIRNCSREGVH 98
>gi|194869246|ref|XP_001972417.1| GG15519 [Drosophila erecta]
gi|190654200|gb|EDV51443.1| GG15519 [Drosophila erecta]
Length = 240
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L DI ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V +I GKIR+CS+EGVH
Sbjct: 81 VGTVITGKIRNCSREGVH 98
>gi|24662815|ref|NP_648490.1| CG7339, isoform A [Drosophila melanogaster]
gi|442631740|ref|NP_001261720.1| CG7339, isoform B [Drosophila melanogaster]
gi|7294695|gb|AAF50032.1| CG7339, isoform A [Drosophila melanogaster]
gi|21428376|gb|AAM49848.1| GM16372p [Drosophila melanogaster]
gi|220949964|gb|ACL87525.1| CG7339-PA [synthetic construct]
gi|220959072|gb|ACL92079.1| CG7339-PA [synthetic construct]
gi|440215643|gb|AGB94414.1| CG7339, isoform B [Drosophila melanogaster]
Length = 240
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L DI ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V +I GKIR+CS+EGVH
Sbjct: 81 VGTVITGKIRNCSREGVH 98
>gi|357626904|gb|EHJ76803.1| putative RNA polymerase III polypeptide H [Danaus plexippus]
Length = 213
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L+DIT I S I PGDG+SHT+V FRY+VFRP V EI+IGKIRSCS++
Sbjct: 36 NKVVLNVGLCIALFDITNIGHSYIFPGDGSSHTEVIFRYIVFRPLVEEILIGKIRSCSRD 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|125979739|ref|XP_001353902.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
gi|54640887|gb|EAL29638.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
Length = 240
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L DI ++DS+I+PGDGASHT V FRY+VFRP V ++ GKIRSCS+E
Sbjct: 36 NKVLLNVGLCIALKDIVSLQDSIILPGDGASHTAVVFRYIVFRPKVGTVVTGKIRSCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|126343684|ref|XP_001363572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Monodelphis domestica]
Length = 204
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GLC+ LYDITK+ED+ + PGDGASHTKV FRYVVF PF+ EI+IG I+ CS +
Sbjct: 36 NKVVYNIGLCICLYDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGVIKGCSPD 95
Query: 82 GVHDS 86
GV+ S
Sbjct: 96 GVYVS 100
>gi|395753475|ref|XP_002831233.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Pongo
abelii]
Length = 239
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 55/75 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 50 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 109
Query: 67 VSEIIIGKIRSCSKE 81
+ EI+IGKI+ CS E
Sbjct: 110 LDEILIGKIKGCSPE 124
>gi|195174185|ref|XP_002027860.1| GL16275 [Drosophila persimilis]
gi|194115536|gb|EDW37579.1| GL16275 [Drosophila persimilis]
Length = 240
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L DI ++DS+I+PGDGASHT V FRY+VFRP V ++ GKIRSCS+E
Sbjct: 36 NKVLLNVGLCIALKDIVSLQDSIILPGDGASHTAVVFRYIVFRPKVGTVMTGKIRSCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|198421693|ref|XP_002128691.1| PREDICTED: similar to KIAA1665 protein isoform 1 [Ciona
intestinalis]
Length = 205
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 1 MLYDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
L+++ + D+V + + KV N+G+C+ L+DI K EDS I PGDGASHTKV FR
Sbjct: 16 WLFNV-NLNDAVKVELNRRLANKVVYNIGVCICLFDILKYEDSYIFPGDGASHTKVHFRC 74
Query: 61 VVFRPFVSEIIIGKIRSCSKEGV 83
VVFRPFV E++IGKI+ CS+EGV
Sbjct: 75 VVFRPFVDEVLIGKIKGCSQEGV 97
>gi|195018138|ref|XP_001984729.1| GH14863 [Drosophila grimshawi]
gi|193898211|gb|EDV97077.1| GH14863 [Drosophila grimshawi]
Length = 246
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L +I ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V ++ GKIR+CS+EGVH
Sbjct: 81 VGTVMTGKIRTCSREGVH 98
>gi|194748262|ref|XP_001956568.1| GF25280 [Drosophila ananassae]
gi|190623850|gb|EDV39374.1| GF25280 [Drosophila ananassae]
Length = 244
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 51/63 (80%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L +I ++DS+I+PGDGASHT+V FRYVVFRP V ++ GKIR+CS+E
Sbjct: 36 NKVLLNVGLCIALKEIVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVLTGKIRNCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|221113754|ref|XP_002163071.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Hydra
magnipapillata]
Length = 202
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 53/65 (81%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC++L+DIT I DS I+PG+GASHT V FR++VFRPF+ E+++ K++SC++E
Sbjct: 36 NKVVHNVGLCIVLFDITHIGDSYILPGNGASHTPVTFRFIVFRPFIDEVLVAKVKSCTRE 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVQVS 100
>gi|289742667|gb|ADD20081.1| DNA-directed RNA polymerase subunit E' [Glossina morsitans
morsitans]
Length = 246
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L D+ ++DS I+PGDGASHT+V FRY+VFRP V ++ GKIRSCS E
Sbjct: 36 NKVLLNVGLCIALKDVVSLKDSFILPGDGASHTEVVFRYIVFRPPVGNVLTGKIRSCSHE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|195379674|ref|XP_002048603.1| GJ14059 [Drosophila virilis]
gi|194155761|gb|EDW70945.1| GJ14059 [Drosophila virilis]
Length = 246
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L +I ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V +I GKIRSC +EGV+
Sbjct: 81 VGTVITGKIRSCCREGVN 98
>gi|195440052|ref|XP_002067873.1| GK12491 [Drosophila willistoni]
gi|194163958|gb|EDW78859.1| GK12491 [Drosophila willistoni]
Length = 245
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ L +I ++DS I+PGDGASHT+V FRYVVFRP + I+ GKIR+CS+E
Sbjct: 36 NKVLLNVGLCIALKEIVSLKDSTILPGDGASHTEVLFRYVVFRPRLGTIMTGKIRNCSRE 95
Query: 82 GVH 84
GVH
Sbjct: 96 GVH 98
>gi|156376407|ref|XP_001630352.1| predicted protein [Nematostella vectensis]
gi|156217371|gb|EDO38289.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC++L+DI I DS ++PGDG+SHT V FR+VVFRPFV EI+ G+IRSC+ E
Sbjct: 36 NKVVHNVGLCIVLHDILSIGDSYLVPGDGSSHTPVTFRFVVFRPFVDEILKGRIRSCNHE 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVQVS 100
>gi|195128795|ref|XP_002008847.1| GI13714 [Drosophila mojavensis]
gi|193920456|gb|EDW19323.1| GI13714 [Drosophila mojavensis]
Length = 245
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ + +I ++DS+I+PGDGASHT+V FRY+VFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIAMKEIVSLKDSIILPGDGASHTEVLFRYIVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V ++ GKIR+CS+EGV+
Sbjct: 81 VGTVMTGKIRNCSREGVN 98
>gi|242004630|ref|XP_002423183.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212506148|gb|EEB10445.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 200
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 52/62 (83%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGL + L+DI+++ DS IIPGDG HT+V FRYVVFRPF++EI++GK++SCS+E
Sbjct: 36 NKVVMNVGLSIALWDISELGDSHIIPGDGCFHTRVCFRYVVFRPFLTEILVGKVKSCSQE 95
Query: 82 GV 83
GV
Sbjct: 96 GV 97
>gi|290562083|gb|ADD38438.1| DNA-directed RNA polymerase III subunit RPC8 [Lepeophtheirus
salmonis]
Length = 200
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGL + L+DI +I DS + PGDGASHT V+FR +VFRPF+ EII GKI+SCSK+
Sbjct: 36 NKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKD 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVQIS 100
>gi|321478047|gb|EFX89005.1| hypothetical protein DAPPUDRAFT_41099 [Daphnia pulex]
Length = 204
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +VGLC+ L+DI K +S I+PGD HTKVEFRYVVFRPF+ +I++G+I++C KE
Sbjct: 36 NKVVLDVGLCIALWDIIKRGESFILPGDSGHHTKVEFRYVVFRPFMEQILVGRIKNCDKE 95
Query: 82 GVH 84
V
Sbjct: 96 SVQ 98
>gi|225711416|gb|ACO11554.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 203
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V NVGL + L+DI +I +S + PGDGASHT+V FR +VFRPF+ E+I GKI+SCSK+
Sbjct: 36 NRVVHNVGLAVCLFDILEIGESFLFPGDGASHTRVNFRILVFRPFMEEVINGKIKSCSKD 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVQVS 100
>gi|159469412|ref|XP_001692857.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158277659|gb|EDP03426.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 201
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVII--------PGDGASHT-------KVFPNVGLCMMLYDITKIEDSVII 46
++ IT+IED + + P D + KV PN+GL + +YD+T IE +
Sbjct: 1 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
P DGA+ V+FR VVFRPF+ EII+GK++SCS+EG+ S
Sbjct: 61 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRIS 100
>gi|313225157|emb|CBY20950.1| unnamed protein product [Oikopleura dioica]
gi|313240114|emb|CBY32466.1| unnamed protein product [Oikopleura dioica]
Length = 199
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 49/63 (77%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV+ GLC+ ++DI K+ DS I+PG+G T ++FR++VFRPF+ E+++GK+RSCS+E
Sbjct: 36 NKVYQRAGLCICMHDILKVGDSAILPGEGLCRTYIKFRFIVFRPFIREVLVGKVRSCSRE 95
Query: 82 GVH 84
G+
Sbjct: 96 GLR 98
>gi|225711736|gb|ACO11714.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 217
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V NVGL + L+DI +I +S + PGDGASHT+V FR +VFRPF+ E+I GKI+SCSK+
Sbjct: 36 NRVVHNVGLAVCLFDILEIGESFLSPGDGASHTRVNFRILVFRPFMEEVINGKIKSCSKD 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVQVS 100
>gi|167998266|ref|XP_001751839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696937|gb|EDQ83274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 189
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ LYDI+K+E + PGDGA H V+FR V+FRPFV E++I K++ C K G
Sbjct: 37 KVLKDLGLCVTLYDISKVEGGSVFPGDGAPHFTVDFRLVMFRPFVGEVLIAKLKRCDKAG 96
Query: 83 VHDSQSS 89
++ S S
Sbjct: 97 LYLSLGS 103
>gi|225719760|gb|ACO15726.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus clemensi]
Length = 203
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGL + L+DI +I +S + PGD ASHT+V FR +VFRPF+ E++ GKI+SCSK+
Sbjct: 36 NKVVLNVGLAVCLFDILEIGESFLFPGDEASHTRVVFRILVFRPFMEEVLNGKIKSCSKD 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVQVS 100
>gi|170595314|ref|XP_001902331.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
gi|158590049|gb|EDP28820.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
Length = 220
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P +GLC+++YD+ + S I+PGDG++HTKV+FRYVVFRPF+ EII K+ S + E
Sbjct: 36 NKIVPGLGLCIIIYDLLDVGVSYILPGDGSTHTKVKFRYVVFRPFIDEIIEAKVLSSNAE 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|302838430|ref|XP_002950773.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
gi|300263890|gb|EFJ48088.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
Length = 201
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVII--------PGDGASHT-------KVFPNVGLCMMLYDITKIEDSVII 46
++ IT+IED + + P D + KV PN+GL + +YD+ IE +
Sbjct: 1 MFIITQIEDQIRVLPQDLQKTPVDAVTAVIEQRFVDKVIPNLGLVVTIYDVLHIEGGFVY 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
P DGA+ KV+FR VVFRP V EII+GK++SCS+EG+ S
Sbjct: 61 PNDGAAFFKVQFRVVVFRPSVGEIIVGKLKSCSREGLRVS 100
>gi|393905506|gb|EJD73994.1| RNA polymerase Rpb7 domain-containing protein, variant [Loa loa]
Length = 207
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 48/62 (77%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P +GLC+++YD+ I S I+PGDG++HTKV+FR+VVFRPF+ E+I K+ S + E
Sbjct: 18 NKIVPGLGLCIIIYDLVDIGASYILPGDGSTHTKVKFRFVVFRPFIDEVIEAKVLSSNAE 77
Query: 82 GV 83
G+
Sbjct: 78 GL 79
>gi|312077201|ref|XP_003141199.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
gi|307763636|gb|EFO22870.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
Length = 225
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 48/62 (77%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P +GLC+++YD+ I S I+PGDG++HTKV+FR+VVFRPF+ E+I K+ S + E
Sbjct: 36 NKIVPGLGLCIIIYDLVDIGASYILPGDGSTHTKVKFRFVVFRPFIDEVIEAKVLSSNAE 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|401624904|gb|EJS42941.1| rpc25p [Saccharomyces arboricola H-6]
Length = 213
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 15/102 (14%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQS 88
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLS 102
>gi|240848647|ref|NP_001155474.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)-like
[Acyrthosiphon pisum]
gi|239788882|dbj|BAH71098.1| ACYPI002394 [Acyrthosiphon pisum]
gi|239788884|dbj|BAH71099.1| ACYPI002394 [Acyrthosiphon pisum]
Length = 203
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 6 TKIEDS----VIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYV 61
T +ED +II + KV +VGLC+ L+DI +I DS+I P +GA +KV FR+V
Sbjct: 16 THLEDDQMSRIIIHLNSMLANKVVMDVGLCLSLFDILEIGDSIIYPSEGAYFSKVRFRFV 75
Query: 62 VFRPFVSEIIIGKIRSCSKEG 82
VFRPFV EI+IGK++S S +G
Sbjct: 76 VFRPFVEEILIGKVKSSSSDG 96
>gi|301090703|ref|XP_002895556.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
gi|262097819|gb|EEY55871.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
Length = 228
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +VGLC+ LYD I D+ + P DG SH++VEFR VVFRPFV E++ G+I SC++E
Sbjct: 37 KVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEH 96
Query: 83 VHDS 86
+ S
Sbjct: 97 IRVS 100
>gi|112490174|pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25.
gi|112490176|pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|6322705|ref|NP_012778.1| Rpc25p [Saccharomyces cerevisiae S288c]
gi|549722|sp|P35718.1|RPC8_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III 25 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C25
gi|396435|emb|CAA80954.1| unknown function [Saccharomyces cerevisiae]
gi|486247|emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae]
gi|516561|gb|AAA20241.1| RNA polymerase III C25 subunit [Saccharomyces cerevisiae]
gi|151941663|gb|EDN60025.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190409694|gb|EDV12959.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
gi|256271085|gb|EEU06184.1| Rpc25p [Saccharomyces cerevisiae JAY291]
gi|285813121|tpg|DAA09018.1| TPA: Rpc25p [Saccharomyces cerevisiae S288c]
gi|323308337|gb|EGA61583.1| Rpc25p [Saccharomyces cerevisiae FostersO]
gi|349579425|dbj|GAA24587.1| K7_Rpc25p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764539|gb|EHN06061.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298294|gb|EIW09392.1| Rpc25p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 212
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|323336829|gb|EGA78092.1| Rpc25p [Saccharomyces cerevisiae Vin13]
Length = 212
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|348687463|gb|EGZ27277.1| hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae]
Length = 228
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +VGLC+ LYD I D+ + P DG SH++VEFR VVFRPFV E++ G+I SC++E
Sbjct: 36 NKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEE 95
Query: 82 GVHDS 86
+ S
Sbjct: 96 HIRVS 100
>gi|259147697|emb|CAY80947.1| Rpc25p [Saccharomyces cerevisiae EC1118]
Length = 212
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|156846922|ref|XP_001646347.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
gi|156117022|gb|EDO18489.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
Length = 222
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 15/102 (14%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TKI+D V IP D +H KV P+VGLC+ +YD+ ++++ +
Sbjct: 1 MFMLTKIKDLVRIPPDQFHRDSASSITHQLNNKFANKVIPHVGLCITVYDLLEVDEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQS 88
PGDG+S+ V FR VVF+PFV EI+ G I C+ EG+ S S
Sbjct: 61 PGDGSSYIYVTFRAVVFKPFVGEIVTGWITKCTAEGIKVSLS 102
>gi|401840255|gb|EJT43152.1| RPC25-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 212
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|365759736|gb|EHN01510.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 212
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|323304205|gb|EGA57981.1| Rpc25p [Saccharomyces cerevisiae FostersB]
Length = 212
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSFINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>gi|254577683|ref|XP_002494828.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
gi|238937717|emb|CAR25895.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
Length = 209
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD---------------GASHTKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI + V IP D A KV P++GLC+ +YDI ++++ +
Sbjct: 1 MFTLSKISELVRIPPDQFHRDTISSITHELNNAYANKVIPHIGLCITVYDILEVDEGQLR 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGAS+ V FR +VF+PFV E+I G I C+ EG+ S
Sbjct: 61 PGDGASYINVTFRALVFKPFVGEVITGWISKCTAEGIKVS 100
>gi|45185736|ref|NP_983452.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|44981491|gb|AAS51276.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|374106658|gb|AEY95567.1| FACR049Wp [Ashbya gossypii FDAG1]
Length = 210
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TKI D V IP D +H K+ P+VGLC+ +YD+ +++ +
Sbjct: 1 MFILTKISDLVRIPPDQFHRDTASAINHQLNNKYANKIIPHVGLCITIYDLLTVDEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGAS V FR +VF+PFV EII G I C+ EG+ S
Sbjct: 61 PGDGASFINVTFRALVFKPFVGEIITGWITQCTNEGIKVS 100
>gi|298709254|emb|CBJ31193.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 279
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+V NVGLC+ L+ I D + P DGA+H KV FR +VFRPFV EI+ GK+ SC+K+G
Sbjct: 54 RVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTKQG 113
Query: 83 V 83
+
Sbjct: 114 I 114
>gi|403217141|emb|CCK71636.1| hypothetical protein KNAG_0H02220 [Kazachstania naganishii CBS
8797]
Length = 206
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 15/98 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI++ V +P D +H KV PN+GLC+ +YD+ ++++ +
Sbjct: 1 MFILSKIKELVRVPPDQFQRKTAFAVTHQLNTKYANKVIPNLGLCISVYDLLEVDEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
PGDGA++T V FR ++F+PFV EI+ G I +C+ G+
Sbjct: 61 PGDGATYTNVTFRALIFKPFVGEILTGWITNCNANGMQ 98
>gi|385302410|gb|EIF46542.1| rna polymerase iii subunit required for transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 189
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 48/67 (71%)
Query: 17 DGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIR 76
+G KV P +GL + ++D+ K++D ++ PGDG+ + KV FR VVF+PFV E++ G I
Sbjct: 15 NGKYANKVIPKLGLVIAVWDVLKVDDGMLKPGDGSIYIKVVFRCVVFKPFVGEVLTGWIE 74
Query: 77 SCSKEGV 83
SCS+EG+
Sbjct: 75 SCSEEGI 81
>gi|366994608|ref|XP_003677068.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
gi|342302936|emb|CCC70713.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
Length = 222
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASHT-------KVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ P++GLC+ +YDI ++++ +
Sbjct: 1 MFILSKISDLVRIPPDQFHRDTISSITHELNNKYADKIVPHIGLCITIYDILEVDEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGAS+ V FR ++F+PFV EI+ G I C+ EG+ S
Sbjct: 61 PGDGASYINVTFRALIFKPFVGEIVTGWISKCTAEGIKVS 100
>gi|325182910|emb|CCA17366.1| DNAdirected RNA polymerase III subunit RPC8 putative [Albugo
laibachii Nc14]
Length = 228
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +VGLC+ +YD I D++I P +G SHT+VEFR VVFRPF+ E++ GKI SC++
Sbjct: 36 NKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMVVFRPFIGEVLKGKILSCNEN 95
Query: 82 GV 83
+
Sbjct: 96 HI 97
>gi|444317941|ref|XP_004179628.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
gi|387512669|emb|CCH60109.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
Length = 205
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 2 LYDITKIEDSVIIPGDGASH---------------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D K+ P +GLC+ +YD+ +++ +
Sbjct: 1 MFILSKISDLVRIPPDQFHRDSISAIMHQLNKRYANKIVPRIGLCVTIYDLLEVDQGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSS 89
PGDG S+ V FR ++F+PFV EII G I C+ EG+ S S
Sbjct: 61 PGDGGSYINVTFRAIIFKPFVGEIITGWIAECTNEGIKVSLSG 103
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YD+T I+ I PGDGAS V FR VVFRPFV EII+ K++ + +G
Sbjct: 37 KVIANLGLCISVYDVTHIDGGFIFPGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LRLS 100
>gi|410082637|ref|XP_003958897.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
gi|372465486|emb|CCF59762.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
Length = 204
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++++ D V IP D +H KV P+VGLC+ +YDI + ++ +
Sbjct: 1 MFILSRVNDLVRIPPDQFHRDAVSSITHQLNDRYANKVIPHVGLCVTVYDILEADEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR +VF+PFV EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYVNVTFRALVFKPFVGEIVTGWISKCTAEGIQVS 100
>gi|50309129|ref|XP_454570.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643705|emb|CAG99657.1| KLLA0E13751p [Kluyveromyces lactis]
Length = 210
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGDGASH---------------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TK+ D V IP D K+ P++GLC+ +YD+ +++ +
Sbjct: 1 MFILTKVADLVRIPPDQFKRDTISTIVHELNTKYANKIIPHIGLCVTVYDVLDVDEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGA+ V FR +VF+PFV EI+ G I C+ EG+ S
Sbjct: 61 PGDGAAFINVTFRALVFKPFVGEIVTGWISQCTTEGIKVS 100
>gi|340368576|ref|XP_003382827.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Amphimedon queenslandica]
Length = 199
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSK- 80
KV NVGLC+ L+DI K+ + ++ GDGA+ K+ F +VFRPF+ EI++GK+R S+
Sbjct: 36 NKVLHNVGLCVSLFDIIKVNEFFLLAGDGATQAKIRFSLIVFRPFIDEILVGKVRGSSRS 95
Query: 81 EGVHDS 86
EG+ S
Sbjct: 96 EGIRVS 101
>gi|365984895|ref|XP_003669280.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
gi|343768048|emb|CCD24037.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD---------------GASHTKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D K+ P++GLC+ +YDI ++++ +
Sbjct: 1 MFILSKISDLVRIPPDQFHRDTLSCITHELNNKYANKIVPHIGLCITVYDILEVDEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGAS+ V FR ++F+PFV EII G I C+ EG+ S
Sbjct: 61 PGDGASYISVIFRGLIFKPFVGEIITGWISKCTAEGIKVS 100
>gi|363756270|ref|XP_003648351.1| hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891551|gb|AET41534.1| Hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
Length = 210
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TKI D V IP D +H KV P+VGLC+ +YD+ ++ +
Sbjct: 1 MFILTKISDLVRIPPDQFHRDTASAINHQLNNKYANKVIPHVGLCITVYDLLAADEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGAS+ V FR +VF+P V EI+ G I C+ EG+ S
Sbjct: 61 PGDGASYINVTFRALVFKPLVGEIVTGWISQCTVEGIKVS 100
>gi|255718171|ref|XP_002555366.1| KLTH0G07546p [Lachancea thermotolerans]
gi|238936750|emb|CAR24929.1| KLTH0G07546p [Lachancea thermotolerans CBS 6340]
Length = 208
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGDG-ASHTK--------------VFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V +P D HTK V P++GLC+ +YD+ ++ + +
Sbjct: 1 MFILSKISDLVRVPPDQFHRHTKAAIFHQLNNKYANKVIPHLGLCITIYDLLEVREGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGA++ FR +VF+PFV EII G I C+ EG+ S
Sbjct: 61 PGDGAAYINTTFRALVFKPFVGEIITGWISQCTAEGIKVS 100
>gi|300176594|emb|CBK24259.2| unnamed protein product [Blastocystis hominis]
Length = 272
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P GLC+ YD +IEDS + PGDGA HT V+FR ++FRP EII+G + S +
Sbjct: 36 NKVIPEYGLCIAFYDFVEIEDSKVYPGDGACHTGVKFRMILFRPVEGEIIVGTVLSSNMS 95
Query: 82 GVHDSQ---------SSNQPEQPISDSTVKDILKYFAEKDK 113
G+ S S N P+ + D + + ++ + D+
Sbjct: 96 GIRVSLEFMDDVWIPSYNLPDVSVYDPVRRIWVWHYRDGDQ 136
>gi|115472059|ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|29837202|dbj|BAC75582.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide [Oryza sativa Japonica Group]
gi|113611164|dbj|BAF21542.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|215765537|dbj|BAG87234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199590|gb|EEC82017.1| hypothetical protein OsI_25976 [Oryza sativa Indica Group]
Length = 202
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI +E I PG+G S KV FR ++FRPFV E+++GKI ++G
Sbjct: 37 KVVANLGLCVSVYDIRSVEGGFIFPGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKG 96
Query: 83 VHDS 86
+H S
Sbjct: 97 LHVS 100
>gi|222637023|gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japonica Group]
Length = 365
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI +E I PG+G S KV FR ++FRPFV E+++GKI ++G
Sbjct: 200 KVVANLGLCVSVYDIRSVEGGFIFPGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKG 259
Query: 83 VHDS 86
+H S
Sbjct: 260 LHVS 263
>gi|19112860|ref|NP_596068.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe 972h-]
gi|74582844|sp|O94285.1|RPC8_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName: Full=RNA
polymerase III subunit C25
gi|339961228|pdb|3AYH|B Chain B, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
RNA Polymerase Iii
gi|3850072|emb|CAA21883.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe]
gi|76782157|gb|ABA54849.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces pombe]
Length = 203
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + +YD KI + +I GDG+S+ V FR ++FRPF E+++GKI+SCS+E
Sbjct: 36 NKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEE 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|422294115|gb|EKU21415.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 220
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ NVGL + LYD I D+ + P DGA+H +V FR +VFRPF+ E+++G+++ CS+
Sbjct: 11 NRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSEN 70
Query: 82 GV 83
G+
Sbjct: 71 GI 72
>gi|50290635|ref|XP_447750.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527061|emb|CAG60697.1| unnamed protein product [Candida glabrata]
Length = 216
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TK++D V IP D +H KV P+VGL + +YD+ ++++ +
Sbjct: 1 MFILTKLKDLVRIPPDQFHRDAVSAITHELNVKYSNKVVPHVGLSVSVYDLLEVDEGQLR 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDGAS+ V FR VVF+PF EI+ G I+ C EG+ S
Sbjct: 61 PGDGASYINVTFRCVVFKPFAGEILTGWIKRCDGEGIQVS 100
>gi|367014661|ref|XP_003681830.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
gi|359749491|emb|CCE92619.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
Length = 210
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P+VGLC+ +YD+ ++++ + PGDGAS+ V FR +VF+PF E++ G I C+ E
Sbjct: 36 NKVIPHVGLCITIYDLLEVDEGQLKPGDGASYIYVTFRALVFKPFAGEVLTGWISKCTAE 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIKVS 100
>gi|17566938|ref|NP_505625.1| Protein RPC-25 [Caenorhabditis elegans]
gi|3881812|emb|CAA94858.1| Protein RPC-25 [Caenorhabditis elegans]
Length = 239
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P++GLC+ +YDI +I DS I+PG+G +V+FR +VFRPFV E+I K+ S++
Sbjct: 36 NKIIPDLGLCICVYDINEIGDSYILPGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQ 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|387219567|gb|AFJ69492.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 206
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 42/57 (73%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
NVGL + LYD I D+ + P DGA+H +V FR +VFRPF+ E+++G+++ CS+ G+
Sbjct: 2 NVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGI 58
>gi|50550449|ref|XP_502697.1| YALI0D11396p [Yarrowia lipolytica]
gi|49648565|emb|CAG80885.1| YALI0D11396p [Yarrowia lipolytica CLIB122]
Length = 202
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 8 IEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
+ D+++ + K+ VGLC+ +YD+ + + ++ GDGA+ K+ FR VVFRPFV
Sbjct: 22 LNDAIVDEINNCYANKIIDGVGLCICVYDLITVGEGQVMSGDGAAFVKITFRMVVFRPFV 81
Query: 68 SEIIIGKIRSCSKEGV 83
E++ G I SC+ EG+
Sbjct: 82 GEVLEGWISSCTAEGI 97
>gi|341899564|gb|EGT55499.1| hypothetical protein CAEBREN_06283 [Caenorhabditis brenneri]
Length = 214
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V P++GLC+ +YDI++I DS I+PG+G +V FR +VFRPFV E+I K+ S++
Sbjct: 36 NRVVPDLGLCICVYDISEIGDSYILPGEGDCRARVTFRMIVFRPFVDEVIEAKVIGSSRQ 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|256088619|ref|XP_002580426.1| DNA-directed rna polymerase III 25 kD polypeptide [Schistosoma
mansoni]
gi|238666000|emb|CAZ36665.1| DNA-directed rna polymerase III 25 kD polypeptide, putative
[Schistosoma mansoni]
Length = 205
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+KV VGLC+ L+DI K+E+S I DGA +T V FR V FRPF+ EI+IG ++S SK
Sbjct: 29 SKVIYKVGLCISLWDILKVEESFISDVDGAYYTTVSFRIVCFRPFIDEILIGIVKSLSKA 88
Query: 82 GVHDS 86
G+ S
Sbjct: 89 GLRVS 93
>gi|224062241|ref|XP_002300802.1| predicted protein [Populus trichocarpa]
gi|222842528|gb|EEE80075.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI KI+ I PG+GAS VEFR +VFRPFV EII K++ + +G
Sbjct: 37 KVISKLGLCISIYDIRKIDGGFISPGEGASTYTVEFRMIVFRPFVGEIISAKLKESTADG 96
Query: 83 VHDS 86
+H S
Sbjct: 97 LHLS 100
>gi|255073311|ref|XP_002500330.1| predicted protein [Micromonas sp. RCC299]
gi|226515593|gb|ACO61588.1| predicted protein [Micromonas sp. RCC299]
Length = 201
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GL + LY+I IE + PG+G++H KVEFR VVFRPFV EII G ++ K G
Sbjct: 38 KVIKDLGLVITLYEIVSIEGGTVYPGEGSAHFKVEFRVVVFRPFVGEIIEGTLKKADKTG 97
Query: 83 VH 84
++
Sbjct: 98 LY 99
>gi|359479790|ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
vinifera]
gi|296086693|emb|CBI32328.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI I+ + PGDGAS VEFR V+FRPFV EII K++ G
Sbjct: 37 KVLANLGLCISVYDIRSIDGGFVFPGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQLS 100
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella
moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella
moellendorffii]
Length = 187
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ LYDI IE + PGDGA VEF+ V+FRPF EI++ K++ C K G
Sbjct: 37 KVVKDLGLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNG 96
Query: 83 V 83
+
Sbjct: 97 L 97
>gi|383853112|ref|XP_003702068.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Megachile rotundata]
Length = 183
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRP- 65
K+ D+V + KV+ NVGLC+ L+DITKIE+S I PGDGASHTKV FR++VF
Sbjct: 21 KLNDAVTDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFRFIVFLTL 80
Query: 66 -FVSEIII 72
F +I+I
Sbjct: 81 GFFEDIVI 88
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 2 LYDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIP 47
L+DITKIE+S I PGDGASHTKV + ++ + ED VI P
Sbjct: 48 LHDITKIEESYIFPGDGASHTKV---IFRFIVFLTLGFFEDIVIPP 90
>gi|384485222|gb|EIE77402.1| hypothetical protein RO3G_02106 [Rhizopus delemar RA 99-880]
Length = 120
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +VG C+ ++DI + + I+ DG S+ KV FR VVFRPF+ EI+IGKI+SCS
Sbjct: 36 NKVVQDVGHCICVHDILNVSEGFILYLDGCSYVKVTFRLVVFRPFIGEILIGKIKSCSPA 95
Query: 82 GV 83
GV
Sbjct: 96 GV 97
>gi|50422141|ref|XP_459633.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
gi|49655301|emb|CAG87863.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
Length = 196
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 8 IEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
I++S+ + KV N+GL + L+D+ I+D ++ PGDGAS +V FR VV++PF+
Sbjct: 22 IQESITNELNKKFANKVISNLGLVISLWDLIDIKDGLLKPGDGASFVEVTFRCVVWKPFI 81
Query: 68 SEIIIGKIRSCSKEGV 83
E++ G + CS EG+
Sbjct: 82 GEVLTGWVSECSAEGI 97
>gi|225437229|ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera]
gi|297735498|emb|CBI17938.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI I+ + PGDGAS VEFR V+FRPFV EII K++ G
Sbjct: 37 KVIANLGLCISVYDIRSIDGGFVFPGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LRLS 100
>gi|302810586|ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella
moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein SELMODRAFT_235152 [Selaginella
moellendorffii]
Length = 155
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ LYDI IE + PGDGA VEF+ V+FRPF EI++ K++ C K G
Sbjct: 37 KVVKDLGLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNG 96
Query: 83 V 83
+
Sbjct: 97 L 97
>gi|226466694|emb|CAX69482.1| polymerase (RNA) III (DNA directed) polypeptide H [Schistosoma
japonicum]
Length = 212
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+KV VGLC+ L+DI K+E+S I DG+ +T V FR V FRPF+ EI+IG ++S SK
Sbjct: 36 SKVIYKVGLCISLWDILKVEESFISDVDGSYYTTVSFRIVCFRPFIDEILIGIVKSLSKT 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GLRVS 100
>gi|452819810|gb|EME26862.1| DNA-directed RNA polymerase III subunit C25 isoform 1 [Galdieria
sulphuraria]
Length = 185
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ P VGLC+ L+D K E+ + PGDG S TKV FR +VF P V E+IIG++ S E
Sbjct: 36 NRIVPGVGLCVGLWDWLKAEEDYLHPGDGGSWTKVIFRLLVFEPQVGEVIIGRVEHSSSE 95
Query: 82 GVHDS 86
G++ S
Sbjct: 96 GLYVS 100
>gi|260943680|ref|XP_002616138.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC
42720]
gi|238849787|gb|EEQ39251.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC
42720]
Length = 196
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + ++DI+ I+D ++ PGDG ++ +V FR +V++PFV EI+ G + CS E
Sbjct: 36 NKVISNLGLAVSVWDISDIKDGLLKPGDGGAYVEVRFRIIVWKPFVGEILTGWVADCSAE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|357166708|ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI +E I PG+G S KV FR ++FRPF+ E+++GKI ++G
Sbjct: 37 KVIANLGLCVSVYDILAVEGGFIFPGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|452819811|gb|EME26863.1| DNA-directed RNA polymerase III subunit C25 isoform 2 [Galdieria
sulphuraria]
Length = 179
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ P VGLC+ L+D K E+ + PGDG S TKV FR +VF P V E+IIG++ S E
Sbjct: 36 NRIVPGVGLCVGLWDWLKAEEDYLHPGDGGSWTKVIFRLLVFEPQVGEVIIGRVEHSSSE 95
Query: 82 GVHDS 86
G++ S
Sbjct: 96 GLYVS 100
>gi|367007176|ref|XP_003688318.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
gi|357526626|emb|CCE65884.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
Length = 205
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 17 DGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIR 76
+G K+ ++GLC+ +YD+ ++++ + PGDG+S+ V FR ++F+PF+ EI+ G I
Sbjct: 31 NGKYANKIIAHLGLCVAVYDVLEVDEGQLRPGDGSSYINVRFRALIFKPFIGEIVTGWIT 90
Query: 77 SCSKEGVHDSQSS 89
C+ +G+ S S
Sbjct: 91 KCTVDGIKVSLSG 103
>gi|190348881|gb|EDK41428.2| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + ++D+++I D + PGDGAS KV FR VV++PFV EI+ G + C+ E
Sbjct: 36 NKVIANLGLVVAVWDLSEIHDGQLKPGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|402223542|gb|EJU03606.1| polymerase III polypeptide H [Dacryopinax sp. DJM-731 SS1]
Length = 238
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+V +VGLC++L+DI + + + GDG KV FR VVFRPFV E+++G+++ C++EG
Sbjct: 37 RVLHDVGLCIVLFDILECSEGRVRFGDGCLWHKVTFRMVVFRPFVGEVLVGEVKGCAEEG 96
Query: 83 VHDS 86
V S
Sbjct: 97 VQVS 100
>gi|357122866|ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI +E I PG+G S KV FR ++FRPF+ E+++GKI ++G
Sbjct: 37 KVITNLGLCVSVYDILAVEGGFIFPGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|326529803|dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI K+E I PG+G S V FR ++FRPF+ E+++GKI ++G
Sbjct: 37 KVVANLGLCVSVYDIRKVEGGFIFPGEGCSTYTVSFRLLMFRPFIGEVLVGKISGYDEKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|384254130|gb|EIE27604.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 211
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GL + +YDI I+ I +GA+H V+FR VVFRPF+ E+++G++ C K G
Sbjct: 37 KVVSDLGLVVTIYDILDIQGGSIYASEGAAHYTVKFRLVVFRPFIGEVLVGRLTKCDKTG 96
Query: 83 VHDS 86
+H S
Sbjct: 97 LHLS 100
>gi|126274174|ref|XP_001387865.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126213735|gb|EAZ63842.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 196
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ N+GL + ++D+ I D ++ PGDG S+ +V FR +V++PF+ EII G + CS E
Sbjct: 36 NKIISNLGLVVTIWDLLDINDGLLKPGDGGSYVEVRFRCIVWKPFIGEIITGWVSDCSAE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|297843474|ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ +YDI IE ++PGDGA+ KV FR VVFRPFV E+I K + G
Sbjct: 37 KVLADLGLCVSVYDIKSIEGGFVLPGDGAATYKVGFRIVVFRPFVGEVIAAKFKESDSNG 96
Query: 83 VH 84
+
Sbjct: 97 LR 98
>gi|146413070|ref|XP_001482506.1| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + ++D+ +I D + PGDGAS KV FR VV++PFV EI+ G + C+ E
Sbjct: 36 NKVIANLGLVVAVWDLLEIHDGQLKPGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|412992998|emb|CCO16531.1| predicted protein [Bathycoccus prasinos]
Length = 238
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV ++GL + LY++ I+ +I GDGA+H +VEFR VVF PFV+EI++GK+ S + E
Sbjct: 38 KVITDLGLVVTLYEVNSIKGGIIYAGDGAAHYEVEFRMVVFSPFVNEILVGKVYSLTDE 96
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
+ I IED++ + KV +GLC+ LYD+ + +I G G + VEFR +V
Sbjct: 21 HSIVAIEDNI----NAKYANKVVQKIGLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGVH 84
FRPF E+++G+IRS + G+H
Sbjct: 77 FRPFKGEVMLGRIRSSTPSGIH 98
>gi|344304860|gb|EGW35092.1| subunit of RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 196
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 44/62 (70%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + ++D+ I+D ++ PGDG S+ +V+FR VV++PFV E++ G + C+ +
Sbjct: 36 NKVIANLGLVITIWDLLDIKDGLLKPGDGGSYVEVQFRCVVWKPFVGEVLTGWVSECTPQ 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
+ I IED++ + KV +GLC+ LYD+ + +I G G + VEFR +V
Sbjct: 21 HSIVAIEDNI----NAKYANKVVQKIGLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGVH 84
FRPF E+++G+IRS + G+H
Sbjct: 77 FRPFKGEVMLGRIRSSTPSGIH 98
>gi|320165968|gb|EFW42867.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 207
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GLC+ LYD+T++ D+ I+ DG++ T+V FR +VFRPF E++ G IR
Sbjct: 36 NKVVLNIGLCICLYDLTEVGDAYIVSSDGSTRTEVVFRLIVFRPFEGEVVSGTIRRSIPS 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ PN+GLC+ ++D+ + +I G G + VEFR VFRPF EII G+I+S ++E
Sbjct: 36 NRIIPNIGLCLCMWDLLSASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ PN+GLC+ ++D+ + +I G G + VEFR VFRPF EII G+I+S ++E
Sbjct: 36 NRIIPNIGLCLCMWDLLSASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|307107725|gb|EFN55967.1| hypothetical protein CHLNCDRAFT_145291 [Chlorella variabilis]
Length = 221
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K +GL + LYDI I D + P DG +H KV FR VVFRPF E+++GK+ +KEG
Sbjct: 37 KAVAGLGLVVTLYDILSIGDGYVYPSDGGAHYKVCFRVVVFRPFRDELLVGKVHKMTKEG 96
Query: 83 VH 84
++
Sbjct: 97 MY 98
>gi|449436395|ref|XP_004135978.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
gi|449523449|ref|XP_004168736.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
Length = 226
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI ++ I P DGA+ KV F +VFRPF E+IIGK++ ++ G
Sbjct: 37 KVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LRIS 100
>gi|392862351|gb|EAS37009.2| DNA-directed RNA polymerase, partial [Coccidioides immitis RS]
Length = 195
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLCM YD+ + D +I G G + V+FR +VFRPF E+I+GKI S +++
Sbjct: 36 NKVIQNVGLCMGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEQ 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|448090378|ref|XP_004197055.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|448094779|ref|XP_004198086.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359378477|emb|CCE84736.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359379508|emb|CCE83705.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
Length = 195
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + ++D+ I+D ++ PGDG S +V FR VV++PFV E++ G + C+ E
Sbjct: 36 NKVVNNLGLAVTVWDLIDIKDGLLKPGDGGSFVEVTFRCVVWKPFVGEVLTGWVSQCTAE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
+ I IED++ + KV +GLC+ L+D+ + +I G G + VEFR +V
Sbjct: 21 HSIVAIEDNI----NAKYANKVVQKIGLCISLFDVLWTSEGLIGHGTGLVNVNVEFRMIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGVH 84
FRPF E+++G+IRS + G+H
Sbjct: 77 FRPFKGEVMLGRIRSSTPSGIH 98
>gi|15222202|ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana]
gi|23296904|gb|AAN13199.1| putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 204
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ +YDI +E ++PGDGA+ KV R VVFRPFV E+I K + G
Sbjct: 37 KVLADLGLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANG 96
Query: 83 VH 84
+
Sbjct: 97 LR 98
>gi|429854331|gb|ELA29351.1| DNA-directed RNA polymerase iii polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 197
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 6 TKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRP 65
T IED++ + KV +GLC+ LYD+ + +I G G + VEFR +VFRP
Sbjct: 24 TAIEDNI----NAKYANKVIQKIGLCICLYDLLWTSEGLIGHGTGLVNVNVEFRMIVFRP 79
Query: 66 FVSEIIIGKIRSCSKEGVH 84
F E++IG+IRS + G++
Sbjct: 80 FKGEVMIGRIRSSTPAGIN 98
>gi|320580456|gb|EFW94678.1| RNA polymerase III subunit C25 [Ogataea parapolymorpha DL-1]
Length = 206
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GL + ++D+ +++D ++ PGDGA V FR VVF+P V E++ G I SCS E
Sbjct: 36 NKVIHKLGLVVAVWDLLQVDDGLLKPGDGAVFINVRFRIVVFKPVVGEVLTGWIESCSDE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|320040236|gb|EFW22169.1| DNA-directed RNA polymerase III polypeptide [Coccidioides
posadasii str. Silveira]
Length = 195
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLCM YD + D +I G G + V+FR +VFRPF E+I+GKI S +++
Sbjct: 36 NKVIQNVGLCMGFYDFLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEQ 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|328771829|gb|EGF81868.1| hypothetical protein BATDEDRAFT_86925 [Batrachochytrium
dendrobatidis JAM81]
Length = 212
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 9 EDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVI-IPGDGASHTKVEFRYVVFRPFV 67
ED+++ + KV NVGLC+ +YD+TK D V+ DG+ +VEFR +VFRPF
Sbjct: 23 EDAIVDELNFKYANKVLHNVGLCISVYDLTKASDPVVHACQDGSYQCQVEFRMIVFRPFK 82
Query: 68 SEIIIGKIRSCS 79
EI+ GKI+ CS
Sbjct: 83 GEILEGKIKDCS 94
>gi|296422646|ref|XP_002840870.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637096|emb|CAZ85061.1| unnamed protein product [Tuber melanosporum]
Length = 194
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GLC+ LYD++ + + +I DG +H VEFR +VFRPF E++ G+I S +
Sbjct: 36 NKVVHNIGLCISLYDLSSVSEG-MIGQDGGAHVNVEFRMIVFRPFKGEVLTGRISSATAA 94
Query: 82 GV 83
GV
Sbjct: 95 GV 96
>gi|302667367|ref|XP_003025270.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
gi|291189368|gb|EFE44659.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
Length = 253
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 13 IIPGDG-ASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEII 71
+I DG + +V NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+I
Sbjct: 38 VIDADGRLTEVQVIQNVGLCIAFYDLLESSDGLIGHGTGLVNVNVKFRIIVFRPFKGEVI 97
Query: 72 IGKIRSCSKEGVHDSQSS 89
IGKI + +++G+ + ++
Sbjct: 98 IGKITNGTEQGIKSTGTA 115
>gi|389631563|ref|XP_003713434.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
gi|351645767|gb|EHA53627.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
Length = 213
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV VGLC+ +YD+ + +I GDG + VE R V+FRPF E++ G+I C K+
Sbjct: 36 NKVIQKVGLCICMYDLLWASEGLIGHGDGLVNVNVECRLVIFRPFKGEVLFGRISRCVKD 95
Query: 82 GVH 84
G+H
Sbjct: 96 GIH 98
>gi|42571371|ref|NP_973776.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|332189916|gb|AEE28037.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 189
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ +YDI +E ++PGDGA+ KV R VVFRPFV E+I K + G
Sbjct: 37 KVLADLGLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANG 96
Query: 83 VH 84
+
Sbjct: 97 LR 98
>gi|310793419|gb|EFQ28880.1| RNA polymerase III subunit Rpc25 [Glomerella graminicola M1.001]
Length = 197
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFR 64
+T IED++ + KV +GLC+ LYD+ + +I G G + VEFR +VFR
Sbjct: 23 VTAIEDNI----NAKYANKVIQKIGLCICLYDLLWTSEGLIGHGTGLVNVNVEFRLIVFR 78
Query: 65 PFVSEIIIGKIRSCSKEGVH 84
PF E++ G+IRS + G++
Sbjct: 79 PFKGEVMFGRIRSSTPAGIN 98
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V NVGLC+ ++D+ + GDG + KV FR VVFRPFV E++I ++RS +E
Sbjct: 36 NRVLHNVGLCVAVFDLVSAGSGRVRYGDGLLYYKVAFRMVVFRPFVGEVVIARVRSADEE 95
Query: 82 GVH 84
GV
Sbjct: 96 GVR 98
>gi|346321249|gb|EGX90849.1| DNA-directed RNA polymerase III, putative [Cordyceps militaris
CM01]
Length = 192
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFR 64
I IED++ + KV +GLC+ LYDI + +I G G + EFR +VFR
Sbjct: 23 IIAIEDNI----NAKYSNKVIQKIGLCICLYDILWTSEGLIGNGTGLVNVNAEFRMIVFR 78
Query: 65 PFVSEIIIGKIRSCSKEGVH 84
PF E++IG+IRS + G++
Sbjct: 79 PFKGEVLIGRIRSSTPAGIN 98
>gi|344228476|gb|EGV60362.1| hypothetical protein CANTEDRAFT_110098 [Candida tenuis ATCC
10573]
Length = 201
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ NVGL + ++DI I++ ++ PGDG SH ++ FR +V++PF+ E++ G + C+ E
Sbjct: 36 NKIIHNVGLAISIWDIEDIKEGLLRPGDGGSHVEITFRMIVWKPFIGELLEGVVTDCNVE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|242799025|ref|XP_002483289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716634|gb|EED16055.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
Length = 195
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GLC+ YD+ K D +I G G + V FR +VFRPF EI++GKI S+E
Sbjct: 36 NKVVQNIGLCIGFYDLLKSSDGLIGHGTGLVNVNVTFRLIVFRPFKGEILLGKITGSSEE 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|295665246|ref|XP_002793174.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225679219|gb|EEH17503.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226278088|gb|EEH33654.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226290932|gb|EEH46360.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides brasiliensis Pb18]
Length = 195
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF EII+GKI S ++
Sbjct: 36 NKVVQNVGLCIGFYDLLEASDGLIGHGTGLVNVNVKFRLIVFRPFKGEIILGKITSGTEN 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIRIS 100
>gi|448519252|ref|XP_003868045.1| Rpc25 protein [Candida orthopsilosis Co 90-125]
gi|380352384|emb|CCG22610.1| Rpc25 protein [Candida orthopsilosis]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P +G+ + ++D+ I+D ++ PGDG S+ +V FR +VF+PFV E++ G + C
Sbjct: 36 NKVVPKLGVVITIWDLLDIKDGLLKPGDGGSYVEVRFRCIVFKPFVGEVLTGWVTECKAT 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|354544030|emb|CCE40752.1| hypothetical protein CPAR2_107870 [Candida parapsilosis]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P +G+ + ++D+ I+D ++ PGDG S+ +V FR +VF+PFV E++ G + C
Sbjct: 36 NKVVPKLGVVITIWDLLDIKDGLLKPGDGGSYVEVRFRCIVFKPFVGEVLTGWVTECKAT 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|406607743|emb|CCH40848.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces
ciferrii]
Length = 206
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ N+G + ++D+ KI+D ++ PGDG S+ K R +VFRPFV EI+ G I C+ +
Sbjct: 36 NKIIQNLGFVVSVWDLIKIDDGLLKPGDGGSYIKCIVRVIVFRPFVGEILTGWIDKCTPD 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|68480238|ref|XP_715928.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|68480354|ref|XP_715878.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437521|gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437573|gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|238879020|gb|EEQ42658.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
albicans WO-1]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ N+GL + ++DI I+D ++ PGDG S+ +V FR +V++PF EI+ G + C+ +
Sbjct: 36 NKIIANLGLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAK 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|189203789|ref|XP_001938230.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985329|gb|EDU50817.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 218
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ PN+GLC+ ++D+ + +I G G + +EFR VFRPF EII G I+S ++E
Sbjct: 36 NKIIPNIGLCLCMWDLLSATEGLIGHGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|261197898|ref|XP_002625351.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595314|gb|EEQ77895.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607836|gb|EEQ84823.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327355776|gb|EGE84633.1| DNA-directed RNA polymerase III subunit polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF EII+GKI S ++
Sbjct: 36 NKVIQNVGLCISFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEIILGKITSGTEN 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|326472028|gb|EGD96037.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS
112818]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+IIGKI + +++
Sbjct: 36 NKVIQNVGLCIAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQ 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|326477107|gb|EGE01117.1| DNA-directed RNA polymerase III polypeptide [Trichophyton equinum
CBS 127.97]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+IIGKI + +++
Sbjct: 36 NKVIQNVGLCIAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQ 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|443898780|dbj|GAC76114.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 326
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFR 64
+T I D + I K+ P+VGLC+ L+DI + + GDG + V FR VVFR
Sbjct: 107 LTSISDQINI----KYANKILPDVGLCVSLFDILSCSEGKVRFGDGCLYHHVTFRLVVFR 162
Query: 65 PFVSEIIIGKIRSCSKEGV 83
PF E++ GKI+S + G+
Sbjct: 163 PFTQEVLTGKIKSSDEAGI 181
>gi|212541336|ref|XP_002150823.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
gi|210068122|gb|EEA22214.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
Length = 194
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ YD+ K D +I G G + V FR +VFRPF EI++GKI S S+E
Sbjct: 36 NKVIQKIGLCIGFYDLLKSSDGLIGHGTGLVNVNVTFRLIVFRPFKGEILLGKIASASEE 95
Query: 82 GV 83
G+
Sbjct: 96 GL 97
>gi|315046208|ref|XP_003172479.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
gi|311342865|gb|EFR02068.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
Length = 195
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+IIGKI + +++
Sbjct: 36 NKVIQNVGLCVAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQ 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|367042650|ref|XP_003651705.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL
8126]
gi|346998967|gb|AEO65369.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL
8126]
Length = 199
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 8 IEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
IED++ + KV +GLC+ L+DI + +I GDG + VEFR VVFRPF
Sbjct: 26 IEDNI----NSKYANKVVQKIGLCICLWDILWTSEGLIGQGDGMVNVNVEFRMVVFRPFK 81
Query: 68 SEIIIGKIRSCSKEGVH 84
E+I+ +I S EG++
Sbjct: 82 GEVIVARITDQSSEGIY 98
>gi|326428134|gb|EGD73704.1| hypothetical protein PTSG_05411 [Salpingoeca sp. ATCC 50818]
Length = 203
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV GL + L+D+ I D I P DGA+H V FR ++FRPFV E++ G IRSCS++
Sbjct: 36 NKVIHKRGLGICLFDLLDIGDGEIHPSDGAAHVHVTFRLLMFRPFVGEVLKGTIRSCSRD 95
>gi|241948883|ref|XP_002417164.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
gi|223640502|emb|CAX44756.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
Length = 195
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ N+GL + ++DI I+D ++ PGDG S+ +V FR +V++PF EI+ G + C+ +
Sbjct: 36 NKIIANLGLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTPK 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|440632844|gb|ELR02763.1| hypothetical protein GMDG_05707 [Geomyces destructans 20631-21]
Length = 207
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 8 IEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
IED++ + KV +GLC+ LYD+ + +I G G + VEFR VVFRPF
Sbjct: 26 IEDNI----NAKYANKVIQKIGLCICLYDLLSSSEGLIGHGTGLVNVNVEFRLVVFRPFR 81
Query: 68 SEIIIGKIRSCSKEGVH 84
E++ G+I S S EG+H
Sbjct: 82 HEVLHGRITSASPEGIH 98
>gi|380491621|emb|CCF35188.1| RNA polymerase III subunit Rpc25 [Colletotrichum higginsianum]
Length = 197
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFR 64
+ IED++ + KV +GLC+ LYD+ + +I G G + VEFR VVFR
Sbjct: 23 VAAIEDNI----NAKYANKVIQKIGLCICLYDLLWTSEGLIGHGTGLVNVNVEFRLVVFR 78
Query: 65 PFVSEIIIGKIRSCSKEGVH 84
PF E++ G+IRS + G++
Sbjct: 79 PFKGEVMFGRIRSSTPAGIN 98
>gi|225561861|gb|EEH10141.1| DNA-directed RNA polymerase III 25 kD polypeptide [Ajellomyces
capsulatus G186AR]
Length = 195
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+I+GKI S ++
Sbjct: 36 NKVIQNVGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEN 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|325091306|gb|EGC44616.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 195
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+I+GKI S ++
Sbjct: 36 NKVIQNVGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEN 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|403177922|ref|XP_003336364.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173264|gb|EFP91945.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 238
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P++GLC+ L+D+ + ++ GDG + +VEF VVFRPF+ E +IG ++S +
Sbjct: 36 NKVLPDLGLCIALFDLLDASEGKVLYGDGCLYHRVEFTLVVFRPFIGEHMIGTVKSSTPS 95
Query: 82 GVHDS 86
GV S
Sbjct: 96 GVRVS 100
>gi|408394367|gb|EKJ73575.1| hypothetical protein FPSE_06193 [Fusarium pseudograminearum
CS3096]
Length = 193
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFR 64
I IED++ + KV +GLC+ LYD+ + +I G G + EFR VVFR
Sbjct: 23 IDAIEDNI----NAKYSNKVIQKIGLCICLYDLHWASEGLIGHGTGLVNVNAEFRMVVFR 78
Query: 65 PFVSEIIIGKIRSCSKEGVH 84
PF E++IG+IRS + G++
Sbjct: 79 PFKGEVMIGRIRSSTPAGIN 98
>gi|428178891|gb|EKX47764.1| DNA-directed RNA polymerase III subunit RPC25 [Guillardia theta
CCMP2712]
Length = 187
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGDGASH---------------TKVFPNVGLCMMLYDITKIEDSVII 46
++ + K++D+V IP S +V GLC+ LY+I ++ + +I
Sbjct: 1 MFVLVKMKDAVPIPASELSKPRSLAVSNQIEKKYSNRVLLGTGLCVCLYEIEELGEGLIY 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
P D A H +V F VVFRPF+ E+I G I + EG+ S
Sbjct: 61 PSDSAVHVRVTFSLVVFRPFIGEVITGSIHRSTPEGLWIS 100
>gi|330925060|ref|XP_003300899.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
gi|311324782|gb|EFQ91031.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ PN+GLC+ ++D+ + +I G G + +EFR VFRPF EII G I+S ++E
Sbjct: 36 NRIIPNIGLCLCMWDLLSATEGLIGHGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|396473245|ref|XP_003839299.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
gi|312215868|emb|CBX95820.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
Length = 213
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P +GLC+ ++D+ + +I G G + +EFR VFRPF EII G+I+S S E
Sbjct: 36 NKIVPGIGLCICMWDLLSASEGLIGHGTGLVNVNIEFRMAVFRPFRGEIIYGRIKSSSPE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|169868152|ref|XP_001840650.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
gi|116498254|gb|EAU81149.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
Length = 227
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D+T++ D + GDG KV FR VFRPFVSE+++ K++S +
Sbjct: 36 NRVLHDVGLCICVFDLTEVGDGRVRYGDGFLWYKVTFRMTVFRPFVSEVVVAKVKSSDER 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV VGL + ++D I + +I GDG S+ V+FR +VFRPF E+++G+I+SC++
Sbjct: 36 NKVIQQVGLAIAIFDFLTIGEGIIKFGDGCSYMNVKFRLLVFRPFRGEVMLGRIKSCTEL 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|254574134|ref|XP_002494176.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|238033975|emb|CAY71997.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|328354004|emb|CCA40401.1| DNA-directed RNA polymerase III subunit C25 [Komagataella
pastoris CBS 7435]
Length = 200
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 44/62 (70%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P +GL + ++D+ +I+D ++ PGDGA+ V+FR ++++PFV E++ G I+ + E
Sbjct: 36 NKVIPKLGLFVSVWDLIEIQDGLLKPGDGATFITVKFRGIIWKPFVGEVLTGWIKKNTPE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|255730589|ref|XP_002550219.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132176|gb|EER31734.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 197
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 43/62 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ N+GL + ++D+ I+D ++ PGDG S+ +V+FR +V++PF EI+ G + C+ +
Sbjct: 36 NKIIANLGLAISVWDLLDIKDGLLKPGDGGSYVEVKFRALVWKPFRGEILTGWVTECTAK 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|240275469|gb|EER38983.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 202
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+I+GKI S ++
Sbjct: 36 NKVIQNVGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEN 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|353240426|emb|CCA72296.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Piriformospora indica DSM 11827]
Length = 227
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
++ ++GL + ++D+TK + + GDG KVEFR VFRPF+SE++IGK++S ++
Sbjct: 36 NRILQDIGLVISVFDLTKCGEGKVRYGDGCLWYKVEFRLAVFRPFISEVLIGKVKSQDED 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|409081111|gb|EKM81470.1| hypothetical protein AGABI1DRAFT_35937 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196321|gb|EKV46249.1| hypothetical protein AGABI2DRAFT_70931 [Agaricus bisporus var.
bisporus H97]
Length = 227
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D+T++ + + GDG K FR V+FRPF+SE++I K++S ++
Sbjct: 36 NRVLHDVGLCICVFDLTQVGEGKVRYGDGCLWYKTVFRMVIFRPFISEVVIAKVKSSDED 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|390596833|gb|EIN06234.1| hypothetical protein PUNSTDRAFT_106452 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 226
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 6 TKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRP 65
T +E ++I + +V +VGLC+ ++DI++ + + GDG KV FR VVFRP
Sbjct: 20 TPVEQALIAELNKKYANRVLHDVGLCVCVFDISEAGEGKVRYGDGMLWYKVVFRLVVFRP 79
Query: 66 FVSEIIIGKIRSCSKEGVHDS 86
F SE+I+ K++S ++G+ S
Sbjct: 80 FASEVILAKVKSSDEDGIRVS 100
>gi|308500610|ref|XP_003112490.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
gi|308267058|gb|EFP11011.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
Length = 234
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 16/78 (20%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKV----------------EFRYVVFRP 65
KV P++GLC+ +YDI++I DS I+PG+G +V +FR +VFRP
Sbjct: 36 NKVVPDLGLCICVYDISEIGDSFILPGEGDCRARVTVFRKMYCFNSKVSDFQFRMIVFRP 95
Query: 66 FVSEIIIGKIRSCSKEGV 83
FV E+I K+ S++G+
Sbjct: 96 FVDEVIEAKVIGSSRQGL 113
>gi|388853764|emb|CCF52485.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Ustilago hordei]
Length = 234
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ +VGLC+ L+DI + + GDG + V FR +VFRPF E++ GKI+S +
Sbjct: 36 NKILVDVGLCISLFDILSCSEGKVRFGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEA 95
Query: 82 GVH 84
G+H
Sbjct: 96 GIH 98
>gi|154283489|ref|XP_001542540.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410720|gb|EDN06108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 693
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+I+GKI S ++ G
Sbjct: 37 KVIQNVGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 IKIS 100
>gi|391348227|ref|XP_003748350.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Metaseiulus occidentalis]
Length = 204
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 22 TKVFPNVGLCMMLYDI---TKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSC 78
KV N GL + + D + D I+PGDGA H KV FR +VFRPF++E+I G++RS
Sbjct: 37 NKVLLNCGLFIKVLDFLPQSSKTDFHILPGDGAVHKKVYFRAIVFRPFINEVIEGRVRSM 96
Query: 79 SKEGV 83
S EG+
Sbjct: 97 SPEGI 101
>gi|121719683|ref|XP_001276540.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
gi|119404752|gb|EAW15114.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
Length = 216
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
Y IED++ + KV +GLC+ YD+ + D +I G G + V+FR +V
Sbjct: 44 YSAVAIEDNI----NEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIV 99
Query: 63 FRPFVSEIIIGKIRSCSKEGV 83
FRPF EI++GKI S +++G+
Sbjct: 100 FRPFKGEIMLGKISSATQQGI 120
>gi|119484158|ref|XP_001261982.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
gi|119410138|gb|EAW20085.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
Length = 201
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
Y IED++ + KV +GLC+ YD+ + D +I G G + V+FR +V
Sbjct: 29 YSAVAIEDNI----NEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIV 84
Query: 63 FRPFVSEIIIGKIRSCSKEGV 83
FRPF EI++GKI S ++ G+
Sbjct: 85 FRPFKGEILLGKISSATQHGI 105
>gi|167535085|ref|XP_001749217.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772370|gb|EDQ86023.1| predicted protein [Monosiga brevicollis MX1]
Length = 1167
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GL + L+DI +I+++ + PGDG++H V+FR VVFRPF E++ G I S + +
Sbjct: 36 NKVIYKLGLAICLFDIVEIKEAHVFPGDGSAHFYVQFRLVVFRPFTGEVLKGAIESSTAD 95
>gi|169602221|ref|XP_001794532.1| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
gi|160706125|gb|EAT87866.2| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
Length = 270
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P +GLC+ ++D+ + +I G G + +EFR VFRPF EII G+I+S S +
Sbjct: 94 NKIVPGIGLCICMWDLLTATEGLIGHGTGLVNVNIEFRMTVFRPFRGEIIYGRIKSSSPD 153
Query: 82 GV 83
G+
Sbjct: 154 GI 155
>gi|328853074|gb|EGG02215.1| hypothetical protein MELLADRAFT_72828 [Melampsora larici-populina
98AG31]
Length = 240
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV P+VGLC+ L++I + ++ GDG + VEF VFRPF+ E ++G ++S S
Sbjct: 36 NKVLPDVGLCLCLFNIVSASEGKVLYGDGCLYHLVEFTLAVFRPFIGESLVGIVKSSSPA 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIRVS 100
>gi|400596259|gb|EJP64035.1| RNA polymerase III subunit Rpc25 [Beauveria bassiana ARSEF 2860]
Length = 195
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTK-VEFRYVVF 63
I IED++ + KV +GLC+ LYDI + +I G G + +EFR +VF
Sbjct: 23 IIAIEDNI----NAKYANKVIQKIGLCICLYDILWTSEGLIGHGTGLVNVNGIEFRMIVF 78
Query: 64 RPFVSEIIIGKIRSCSKEGVH 84
RPF E+IIG+IRS + G++
Sbjct: 79 RPFKGEVIIGRIRSSTPAGIN 99
>gi|345566306|gb|EGX49249.1| hypothetical protein AOL_s00078g282 [Arthrobotrys oligospora ATCC
24927]
Length = 194
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV VGL + LYDI K D +I G G + VEFR +VFRPF E+I G+I + +
Sbjct: 36 NKVIHKVGLVICLYDILKSSDGLIGSGTGDVNINVEFRLIVFRPFKGEVITGRIANSTPN 95
Query: 82 GVH 84
G+H
Sbjct: 96 GIH 98
>gi|242045626|ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
gi|241924061|gb|EER97205.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
Length = 202
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI IE I PG G S KV FR ++F+PF E+++G+I +G
Sbjct: 37 KVIANLGLCVSVYDIRSIEGGSIHPGQGCSTYKVSFRLLMFKPFNGEVLVGRIIGYDDKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|330804580|ref|XP_003290271.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
gi|325079597|gb|EGC33189.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
Length = 234
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 2 LYDITKIEDSVIIPGDGASH--------------TKVFPNVGLCMMLYDITKIEDSVIIP 47
++ + IED V IP + ++ +KV + GL + LYDI DS +
Sbjct: 1 MFHLLTIEDRVRIPPNDFNNEVQTIEDEIEKKYVSKVVLDGGLFIALYDILGTGDSYVYS 60
Query: 48 GDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE------GVHDSQSSNQPEQPISDS-T 100
GDGA+H V FR VVF+PF EI+ G I+ +K+ G +D N E PI S +
Sbjct: 61 GDGAAHLMVRFRMVVFKPFKGEIMEGVIKKSTKDQVQITIGFYDEIYLNPIELPIPSSFS 120
Query: 101 VKDILKYFAEKDK 113
++ L Y+ D
Sbjct: 121 DEEKLWYWEWNDN 133
>gi|67521980|ref|XP_659051.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|40745421|gb|EAA64577.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|259486758|tpe|CBF84875.1| TPA: DNA-directed RNA polymerase III subunit 22.9 kDa, putative
(AFU_orthologue; AFUA_8G04350) [Aspergillus nidulans
FGSC A4]
Length = 208
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
Y IED++ + KV +GLC+ YD+ + D +I G G + V+FR +V
Sbjct: 21 YSSVAIEDNI----NEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGV 83
FRPF EI++GKI S ++ G+
Sbjct: 77 FRPFRGEIVLGKISSATENGI 97
>gi|169784414|ref|XP_001826668.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus oryzae
RIB40]
gi|238508450|ref|XP_002385418.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|83775415|dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688937|gb|EED45289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|391864250|gb|EIT73546.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 193
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
Y IED++ + KV VGLC+ YD+ + D +I G G + V+FR +V
Sbjct: 21 YSSVAIEDNI----NEKYANKVIQKVGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGV 83
FRPF EI++GKI S ++ G+
Sbjct: 77 FRPFKGEIMLGKISSATEHGI 97
>gi|336368541|gb|EGN96884.1| hypothetical protein SERLA73DRAFT_185115 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381332|gb|EGO22484.1| hypothetical protein SERLADRAFT_473379 [Serpula lacrymans var.
lacrymans S7.9]
Length = 222
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VG+C+ ++D+T+ + + GDG KV FR VVFRPF SE+I+ K++S ++
Sbjct: 36 NRVLHDVGMCICVFDLTEASEGKVRYGDGCLWYKVIFRMVVFRPFASEVILAKVKSSDED 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIRLS 100
>gi|357517541|ref|XP_003629059.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523081|gb|AET03535.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 220
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDIT IE I PG GA +V F ++FRPF EII K+ S +G
Sbjct: 64 KVIQKLGLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADG 123
Query: 83 VHDS 86
V S
Sbjct: 124 VRLS 127
>gi|345320354|ref|XP_001521817.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Ornithorhynchus anatinus]
Length = 69
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTK 55
K+ DS++ + KV NVGLC+ LYDITK+ED+ I PGDGASHTK
Sbjct: 21 KLNDSIVEELNKKLANKVVYNVGLCICLYDITKLEDAYIFPGDGASHTK 69
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 2 LYDITKIEDSVIIPGDGASHTK 23
LYDITK+ED+ I PGDGASHTK
Sbjct: 48 LYDITKLEDAYIFPGDGASHTK 69
>gi|395325654|gb|EJF58073.1| polymerase III polypeptide H [Dichomitus squalens LYAD-421 SS1]
Length = 220
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D+ ++ + + GDG KV FR VFRPF SE+II K++S ++
Sbjct: 36 NRVLHDVGLCICVFDLAEVGEGKVRYGDGCLWYKVVFRLTVFRPFASEVIIAKVKSSDED 95
Query: 82 GV 83
GV
Sbjct: 96 GV 97
>gi|339238867|ref|XP_003380988.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
gi|316976048|gb|EFV59393.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
Length = 202
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N GL + ++ I +I DS+ +PGDG +HT+V + +VF P + E++ G+I C
Sbjct: 48 NKVILNYGLGVCVHSIEEIGDSITLPGDGGAHTEVTWNMIVFHPNIGEVLKGEISKCDST 107
Query: 82 GVHD 85
GV D
Sbjct: 108 GVSD 111
>gi|328790209|ref|XP_003251392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Apis mellifera]
Length = 177
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
K+ D++ + KV+ NVGLC+ L+DITKIE+S I PGDGASHTKV F + F
Sbjct: 21 KLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFLTLGF 77
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITKIE+S I PGDGASHTKV
Sbjct: 48 LHDITKIEESYIFPGDGASHTKV 70
>gi|357517543|ref|XP_003629060.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523082|gb|AET03536.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDIT IE I PG GA +V F ++FRPF EII K+ S +G
Sbjct: 64 KVIQKLGLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADG 123
Query: 83 VHDS 86
V S
Sbjct: 124 VRLS 127
>gi|363807592|ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
gi|255644932|gb|ACU22966.1| unknown [Glycine max]
Length = 214
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI I+ I PGDGA V F ++FRPF EII ++ S +G
Sbjct: 37 KVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADG 96
Query: 83 VH 84
+
Sbjct: 97 LR 98
>gi|380018292|ref|XP_003693066.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Apis florea]
Length = 177
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
K+ D++ + KV+ NVGLC+ L+DITKIE+S I PGDGASHTKV F + F
Sbjct: 21 KLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFLTLGF 77
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITKIE+S I PGDGASHTKV
Sbjct: 48 LHDITKIEESYIFPGDGASHTKV 70
>gi|414886498|tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit polypeptide [Zea mays]
Length = 290
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI IE I PG+G S KV FR ++F+PF EI++G+I +G
Sbjct: 125 KVITKLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKG 184
Query: 83 VHDS 86
+ S
Sbjct: 185 LQVS 188
>gi|356572779|ref|XP_003554543.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like
[Glycine max]
Length = 212
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ +YDI I+ I PGDGA V F ++FRPF EII ++ S +G
Sbjct: 37 KVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADG 96
Query: 83 VH 84
+
Sbjct: 97 LR 98
>gi|358372760|dbj|GAA89362.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
kawachii IFO 4308]
Length = 193
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ YD+ + D +I G G + V+FR +VFRPF EI++GKI S ++
Sbjct: 36 NKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEH 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|414886500|tpg|DAA62514.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 210
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI IE I PG+G S KV FR ++F+PF EI++G+I +G
Sbjct: 125 KVITKLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKG 184
Query: 83 VHDS 86
+ S
Sbjct: 185 LQVS 188
>gi|145253312|ref|XP_001398169.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus niger
CBS 513.88]
gi|134083732|emb|CAK42970.1| unnamed protein product [Aspergillus niger]
gi|350633207|gb|EHA21573.1| hypothetical protein ASPNIDRAFT_51264 [Aspergillus niger ATCC
1015]
Length = 193
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ YD+ + D +I G G + V+FR +VFRPF EI++GKI S ++
Sbjct: 36 NKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEH 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|224005523|ref|XP_002291722.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
gi|220972241|gb|EED90573.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
Length = 223
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 23 KVFPNVGLCMMLYDI-TKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ +VGL + Y +I D +++PGDG +H +V F+ +VFRPFV E++IG + C++E
Sbjct: 37 KIIVDVGLIICPYGPPLEIGDGILVPGDGGAHHQVLFQCLVFRPFVEEVLIGTVSDCNEE 96
Query: 82 GV 83
GV
Sbjct: 97 GV 98
>gi|115491011|ref|XP_001210133.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
gi|114196993|gb|EAU38693.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
Length = 206
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
Y IED++ + KV +GLC+ YD+ + D +I G G + V+FR +V
Sbjct: 21 YSSVAIEDNI----NEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGV 83
FRPF EI++GKI S ++ G+
Sbjct: 77 FRPFKGEIMLGKISSATEHGI 97
>gi|238007814|gb|ACR34942.1| unknown [Zea mays]
Length = 202
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI IE I PG+G S KV FR ++F+PF EI++G+I +G
Sbjct: 37 KVITKLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|154308992|ref|XP_001553831.1| hypothetical protein BC1G_08024 [Botryotinia fuckeliana B05.10]
Length = 196
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 2 LYDITKIEDSVIIP----GDGASH-----------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TKI D V I G AS KV +GLC+ YD+ + +I
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGLCICFYDLLSASEGLIG 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
GDG + VEFR VVFRPF EI+ G+I S + G+
Sbjct: 61 HGDGLVNVNVEFRIVVFRPFKFEIMTGRISSSIESGIR 98
>gi|347838548|emb|CCD53120.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Botryotinia fuckeliana]
Length = 196
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 2 LYDITKIEDSVIIP----GDGASH-----------TKVFPNVGLCMMLYDITKIEDSVII 46
++ +TKI D V I G AS KV +GLC+ YD+ + +I
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGLCICFYDLLSASEGLIG 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
GDG + VEFR VVFRPF EI+ G+I S + G+
Sbjct: 61 HGDGLVNVNVEFRIVVFRPFKFEIMTGRISSSIESGIR 98
>gi|414886499|tpg|DAA62513.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 218
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI IE I PG+G S KV FR ++F+PF EI++G+I +G
Sbjct: 125 KVITKLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKG 184
Query: 83 VHDS 86
+ S
Sbjct: 185 LQVS 188
>gi|406865974|gb|EKD19014.1| RNA polymerase III subunit Rpc25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 250
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ LYD+ + +I G G + VEFR +VFRPF +E+I G+I S +
Sbjct: 65 NKVIQKIGLCVCLYDLLAASEGLIGHGTGLVNVNVEFRLIVFRPFKNEVITGRISSATPR 124
Query: 82 GVH 84
G+
Sbjct: 125 GIR 127
>gi|226496239|ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
gi|195612502|gb|ACG28081.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
Length = 202
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI IE I PG+G S KV FR ++F+PF EI++G+I +G
Sbjct: 37 KVITKLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|66822507|ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|66822575|ref|XP_644642.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|122057759|sp|Q557J3.1|RPC8_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H
gi|60472717|gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60472766|gb|EAL70716.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 252
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+KV N GL + LYDI DS + GDG +H V FR VVF+PF E++ G I+ S++
Sbjct: 35 SKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQ 94
Query: 82 GVH 84
+
Sbjct: 95 SIQ 97
>gi|71017639|ref|XP_759050.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
gi|46098719|gb|EAK83952.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
Length = 249
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ +VGLC+ L+DI + + GDG + V FR +VFRPF E++ GKI+S +
Sbjct: 36 NKILVDVGLCISLFDILSCSEGKVRFGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEA 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|392564956|gb|EIW58133.1| polymerase III polypeptide H [Trametes versicolor FP-101664 SS1]
Length = 220
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 43/62 (69%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D++++ + + GDG KV FR VVFRPF SE+++ +++S ++
Sbjct: 36 NRVLHDVGLCICVFDLSEVGEGKVRYGDGCLWYKVVFRLVVFRPFASEVLLARVKSSDED 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|343429728|emb|CBQ73300.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Sporisorium reilianum SRZ2]
Length = 244
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ +VGLC+ L+DI + + GDG + V FR +VFRPF E++ GKI+S +
Sbjct: 36 NKILVDVGLCISLFDILSCSEGKVRFGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEA 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|432870761|ref|XP_004071835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Oryzias latipes]
Length = 185
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 30/39 (76%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
KV NVGLC+ LYDITK+EDS I PGDGASHTKV +
Sbjct: 36 NKVVFNVGLCICLYDITKLEDSYIFPGDGASHTKVTMGF 74
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
LYDITK+EDS I PGDGASHTKV
Sbjct: 48 LYDITKLEDSYIFPGDGASHTKV 70
>gi|170101368|ref|XP_001881901.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643256|gb|EDR07509.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 238
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V ++GLC+ L+D+ + + + GDG KV FR VVFRPF SE+II K++S ++
Sbjct: 36 NRVLHDLGLCVCLFDLVQAGEGKVRYGDGFLWYKVVFRMVVFRPFTSEVIIAKVKSSDED 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|327305103|ref|XP_003237243.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326460241|gb|EGD85694.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 196
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKV-EFRYVVFRPFVSEIIIGKIRSCSK 80
KV NVGLC+ YD+ + D +I G G + V +FR +VFRPF E+IIGKI + ++
Sbjct: 36 NKVIQNVGLCIAFYDLLESSDGLIGHGTGLVNVNVVKFRMIVFRPFKGEVIIGKITNGTE 95
Query: 81 EGV 83
+G+
Sbjct: 96 QGI 98
>gi|302686598|ref|XP_003032979.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
gi|300106673|gb|EFI98076.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
Length = 228
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V NVGL + ++D+++ + + GDG KV FR VVFRPF SE+++GK++S ++
Sbjct: 36 NRVLHNVGLGICVFDLSQASEGKVRYGDGMLWYKVVFRLVVFRPFTSEVVLGKVKSSDED 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIRVS 100
>gi|238014632|gb|ACR38351.1| unknown [Zea mays]
Length = 130
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +GLC+ +YDI IE I PG+G S KV FR ++F+PF EI++G+I +G
Sbjct: 37 KVITKLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 LQVS 100
>gi|425771830|gb|EKV10263.1| hypothetical protein PDIP_61090 [Penicillium digitatum Pd1]
gi|425777177|gb|EKV15361.1| hypothetical protein PDIG_26640 [Penicillium digitatum PHI26]
Length = 193
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ YD+ + D +I G G + V+FR +VFRPF EI++GKI S ++
Sbjct: 36 NKVIQKIGLCISFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEIMLGKISSGTEH 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|407929309|gb|EKG22141.1| RNA polymerase Rpb7 [Macrophomina phaseolina MS6]
Length = 200
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV VGLC+ L DI K + +I G G + VEFR V+FRPF EII GKI E
Sbjct: 36 NKVIQEVGLCICLRDILKSSEGLIGHGTGIVNVNVEFRLVIFRPFKGEIIEGKISGSDHE 95
Query: 82 GV 83
G+
Sbjct: 96 GI 97
>gi|255953671|ref|XP_002567588.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589299|emb|CAP95439.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 185
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ YD+ + D +I G G + V+FR +VFRPF EI++GKI S ++
Sbjct: 28 NKVIQKIGLCISFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEIMLGKISSGTEH 87
Query: 82 GV 83
G+
Sbjct: 88 GI 89
>gi|449548373|gb|EMD39340.1| hypothetical protein CERSUDRAFT_134380 [Ceriporiopsis
subvermispora B]
Length = 234
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D++++ + + GDG KV FR VVFRPF SE+++ K++S ++
Sbjct: 36 NRVLHDVGLCVCVFDLSEVGEGKVRYGDGFLWYKVVFRLVVFRPFASEVLLAKVKSSDED 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ +YD+ + +I G G + VE R VVFRPF E++ +I C K+
Sbjct: 36 NKVIQKLGLCICVYDLLWASEGLIGHGTGVVNVNVECRLVVFRPFKGEVLFARISRCVKD 95
Query: 82 GVH 84
G+H
Sbjct: 96 GIH 98
>gi|164656000|ref|XP_001729128.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
gi|159103018|gb|EDP41914.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
Length = 232
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV ++GLC+ ++DI + + + GDG + V FR VVFRPF +E+++G+I S + E
Sbjct: 36 NKVLQDIGLCICVHDILRSSEGRVRWGDGCLYYTVVFRLVVFRPFTNEVLVGRISSSTSE 95
Query: 82 GVHDS 86
+ S
Sbjct: 96 SIRIS 100
>gi|297735499|emb|CBI17939.3| unnamed protein product [Vitis vinifera]
Length = 189
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
KV N+GLC+ +YDI I+ + PGDGAS VEFR V+FRPFV
Sbjct: 132 KVIANLGLCVSVYDIRSIDGDFVFPGDGASTYTVEFRLVMFRPFV 176
>gi|301787831|ref|XP_002929329.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Ailuropoda melanoleuca]
Length = 175
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|65301135|ref|NP_001018062.1| DNA-directed RNA polymerase III subunit RPC8 isoform b [Homo
sapiens]
gi|332859902|ref|XP_003317311.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan troglodytes]
gi|16878080|gb|AAH17248.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|119580842|gb|EAW60438.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD),
isoform CRA_b [Homo sapiens]
Length = 175
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|350396631|ref|XP_003484614.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Bombus impatiens]
Length = 177
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
K+ D++ + KV+ +VGLC+ L+DITKIE+S I PGDGASHTKV F + F
Sbjct: 21 KLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIFPGDGASHTKVVFLTLGF 77
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITKIE+S I PGDGASHTKV
Sbjct: 48 LHDITKIEESYIFPGDGASHTKV 70
>gi|389745440|gb|EIM86621.1| polymerase III polypeptide H [Stereum hirsutum FP-91666 SS1]
Length = 220
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 9 EDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVS 68
E ++I + KV +VGLC+ ++DI + + + GDG V FR VFRPF S
Sbjct: 23 EQALITELNKKYANKVLHDVGLCICVFDIAEAGEGKVRYGDGFLWYAVVFRLTVFRPFPS 82
Query: 69 EIIIGKIRSCSKEGVHDS 86
E+I+ K++S ++G+H S
Sbjct: 83 EVILAKVKSSDEDGIHLS 100
>gi|194037190|ref|XP_001929172.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Sus scrofa]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|426225830|ref|XP_004007064.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Ovis aries]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|393221996|gb|EJD07480.1| hypothetical protein FOMMEDRAFT_143872 [Fomitiporia mediterranea
MF3/22]
Length = 243
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++DI + + + GDG +V FR VVFRPF E+I+ K++S +E
Sbjct: 36 NRVLHDVGLCICVFDIAQAGEGKVRYGDGCLWHRVVFRMVVFRPFSGEVILAKVKSSDEE 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIRLS 100
>gi|410965707|ref|XP_003989383.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Felis catus]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|149743080|ref|XP_001502576.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Equus caballus]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|354504595|ref|XP_003514359.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cricetulus griseus]
gi|344257851|gb|EGW13955.1| DNA-directed RNA polymerase III subunit RPC8 [Cricetulus griseus]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|409041829|gb|EKM51314.1| hypothetical protein PHACADRAFT_263362 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D+ ++ + + GDG KV FR VVFRPF SE+I+ K++S ++
Sbjct: 36 NRVLHDVGLCVSVFDLAEVGEGKVRYGDGFLWYKVVFRLVVFRPFPSEVILAKVKSSDED 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>gi|344296184|ref|XP_003419789.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Loxodonta africana]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGF 74
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>gi|308804628|ref|XP_003079626.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
gi|116058082|emb|CAL53271.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
Length = 213
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
GLC+ LY+IT I ++ G+G +VEF+ V+F+PF E++ GK+ S + G H S
Sbjct: 53 GLCVTLYEITNISGGAVLSGEGCVCFEVEFKLVLFKPFTGEVLEGKLESSDEHGAHVS 110
>gi|156544678|ref|XP_001605231.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Nasonia vitripennis]
Length = 175
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ D++ + KV+ NVGLC+ L DITKIE+S I PGDGASHTKV +
Sbjct: 21 KLNDAITDELNRKLSNKVYLNVGLCIALNDITKIEESYIFPGDGASHTKVTLGF 74
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 20/23 (86%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L DITKIE+S I PGDGASHTKV
Sbjct: 48 LNDITKIEESYIFPGDGASHTKV 70
>gi|294948290|ref|XP_002785689.1| RNA polymerase Rpb7, putative [Perkinsus marinus ATCC 50983]
gi|239899712|gb|EER17485.1| RNA polymerase Rpb7, putative [Perkinsus marinus ATCC 50983]
Length = 213
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 2 LYDITKIEDSVIIPGD---GASHT-------------KVFPNVGLCMMLYDITKIEDSVI 45
++ IT + D++++P D H +V P+VGL + LYD+ +I D+ I
Sbjct: 1 MFIITVVSDTIVLPPDEFEPGKHIPHIRRRIQEKYVDRVIPDVGLVVALYDVIRITDAYI 60
Query: 46 IPGD-----GASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDST 100
P D G + KV FR VFRP V E I+G + + G++ S + I +
Sbjct: 61 HPADFHHQKGGAFCKVAFRLCVFRPMVGETIVGTVDRSTATGLYVKLGSWFKDVHIPYAD 120
Query: 101 VKDILKY 107
+KD Y
Sbjct: 121 LKDPCLY 127
>gi|328872887|gb|EGG21254.1| hypothetical protein DFA_01132 [Dictyostelium fasciculatum]
Length = 1058
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 1 MLYDITKIEDSVIIPGDGASH--------------TKVFPNVGLCMMLYDITKIEDSVII 46
+++ + IED V IP + K+ N GL + LYDI D+ I
Sbjct: 793 IMFHLITIEDKVRIPPSAFENELQTIEDEIEKKYTNKILINGGLFIALYDILGTGDAYIY 852
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
GDG SH V R VVF+PFV EI+ G I+ +K+
Sbjct: 853 SGDGGSHLIVRCRLVVFKPFVGEILEGVIKKTTKD 887
>gi|291243947|ref|XP_002741859.1| PREDICTED: hypothetical protein isoform 2 [Saccoglossus
kowalevskii]
Length = 176
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKV 56
K+ D++ + KV NVGLC+ L+DITK+EDS + PGDGASHTKV
Sbjct: 21 KLNDAIAEELNKKLANKVVHNVGLCIALHDITKLEDSYLFPGDGASHTKV 70
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 22/24 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKVF 25
L+DITK+EDS + PGDGASHTKVF
Sbjct: 48 LHDITKLEDSYLFPGDGASHTKVF 71
>gi|340992695|gb|EGS23250.1| DNA-directed RNA polymerase III subunit-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 191
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV +GLC+ L+DI + +I GD VEFR VVFRPF E+I+ +I S E
Sbjct: 36 NKVLQKIGLCICLWDILWTSEGLIGQGD------VEFRMVVFRPFKGEVIVARISDQSPE 89
Query: 82 GVH 84
G+H
Sbjct: 90 GIH 92
>gi|34526255|dbj|BAC85211.1| unnamed protein product [Homo sapiens]
Length = 121
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTK 55
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTK
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTK 69
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 2 LYDITKIEDSVIIPGDGASHTK 23
L+DITK+ED+ + PGDGASHTK
Sbjct: 48 LFDITKLEDAYVFPGDGASHTK 69
>gi|294954871|ref|XP_002788336.1| RPB7 subunit of the RNA polymerase III, OB fold, putative
[Perkinsus marinus ATCC 50983]
gi|239903648|gb|EER20132.1| RPB7 subunit of the RNA polymerase III, OB fold, putative
[Perkinsus marinus ATCC 50983]
Length = 189
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 2 LYDITKIEDSVIIPGDG---ASHT-------------KVFPNVGLCMMLYDITKIEDSVI 45
++ IT + D++++P D H +V P+VGL + LYD+ +I D+ I
Sbjct: 1 MFIITVVSDTIVLPPDEFEPGKHIPHIRRRIQEKYVDRVIPDVGLVVALYDVIRITDAYI 60
Query: 46 IPGD-----GASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDST 100
P D G + KV FR VFRP V E I+G + + G++ S + I +
Sbjct: 61 HPADFHHQKGGAFCKVAFRLCVFRPMVGETIVGTVDRSTATGLYVKLGSWFKDVHIPYAD 120
Query: 101 VKDILKY 107
+KD Y
Sbjct: 121 LKDPCLY 127
>gi|296806184|ref|XP_002843902.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
gi|238845204|gb|EEQ34866.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
Length = 202
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTK-------VEFRYVVFRPFVSEIIIGK 74
KV NVGLC+ YD+ + D +I G G + V+FR +VFRPF E+IIGK
Sbjct: 36 NKVIQNVGLCIAFYDLLESSDGLIGHGTGLVNVNERWLILAVKFRIIVFRPFKGEVIIGK 95
Query: 75 IRSCSKEGV 83
I + +++G+
Sbjct: 96 ITNGTEQGI 104
>gi|46122449|ref|XP_385778.1| hypothetical protein FG05602.1 [Gibberella zeae PH-1]
Length = 199
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKV------EF 58
I IED++ + KV +GLC+ LYD+ + +I G G + EF
Sbjct: 23 IDAIEDNI----NAKYSNKVIQKIGLCICLYDLHWASEGLIGHGTGLVNVNAKEYFTAEF 78
Query: 59 RYVVFRPFVSEIIIGKIRSCSKEGVH 84
R VVFRPF E++IG+IRS + G++
Sbjct: 79 RMVVFRPFKGEVMIGRIRSSTPAGIN 104
>gi|393236166|gb|EJD43716.1| hypothetical protein AURDEDRAFT_145291 [Auricularia delicata
TFB-10046 SS5]
Length = 223
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+V +VGLC+ ++D+ + + GDG KV FR VVFRPF SE+++ ++S S++
Sbjct: 36 NRVLHDVGLCVCVFDLIHAGEGKVRYGDGCLWHKVTFRLVVFRPFKSEVLLATVQSSSED 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GIRLS 100
>gi|219117503|ref|XP_002179546.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409437|gb|EEC49369.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 208
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 22 TKVFPNVGLCMMLY-DITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSK 80
+V +VGL + Y + ++ + GDG +H + EFR +VFRPFV E+ +G+I +
Sbjct: 36 NRVLMDVGLVVGRYGECARVGHGFCVSGDGGAHHECEFRLIVFRPFVEEVCLGRITKSTA 95
Query: 81 EGVHDS 86
EG+H S
Sbjct: 96 EGIHVS 101
>gi|321262911|ref|XP_003196174.1| hypothetical protein CGB_I2230C [Cryptococcus gattii WM276]
gi|317462649|gb|ADV24387.1| hypothetical protein CNJ01580 [Cryptococcus gattii WM276]
Length = 198
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ P GL + ++DI ED + G+G + KV FR ++F PFV E+I+G++ S +K
Sbjct: 21 NKLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKS 80
Query: 82 GVHDS 86
+ S
Sbjct: 81 YIRVS 85
>gi|410080111|ref|XP_003957636.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS
2517]
gi|372464222|emb|CCF58501.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS
2517]
Length = 171
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD +IE I+P DG++ KV++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLNYDQIEIERGRILPTDGSAEFKVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|392578056|gb|EIW71184.1| hypothetical protein TREMEDRAFT_42634 [Tremella mesenterica DSM
1558]
Length = 224
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
K+ GL + ++DI ED + G+G + KV FR ++F PF+SEII+GK+ S SK+
Sbjct: 36 NKLVSQKGLGLSVWDILTAEDGKVTWGNGLMYYKVSFRLMLFSPFISEIIVGKVLSSSKK 95
Query: 82 GVHDS 86
+ S
Sbjct: 96 YIRIS 100
>gi|73968964|ref|XP_858018.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Canis lupus familiaris]
Length = 175
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY 60
K+ DS+ + KV +VGLC+ L+DIT++ED+ + PGDGASHTKV +
Sbjct: 21 KLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVFPGDGASHTKVSLGF 74
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DIT++ED+ + PGDGASHTKV
Sbjct: 48 LFDITRLEDAYVFPGDGASHTKV 70
>gi|401402842|ref|XP_003881348.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
gi|325115760|emb|CBZ51315.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
Length = 200
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N GL + Y++ +I+ + I GDG++ KVEF V FRPF EI+ G + +
Sbjct: 36 NKVVANCGLAVAFYELRRIQSATIRSGDGSARYKVEFALVFFRPFQGEILEGTLMHSDTQ 95
Query: 82 GVHDS 86
G+ S
Sbjct: 96 GLRIS 100
>gi|324519968|gb|ADY47529.1| DNA-directed RNA polymerase III subunit RPC8 [Ascaris suum]
Length = 93
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 33/40 (82%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
K+ P +GLC+ +YD+ ++ S I+PGDG++HT+V+FR+VV
Sbjct: 48 KIVPGLGLCLFVYDLIEVGVSYILPGDGSTHTRVKFRFVV 87
>gi|405122725|gb|AFR97491.1| hypothetical protein CNAG_04728 [Cryptococcus neoformans var.
grubii H99]
Length = 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++ P GL + ++DI ED + G+G + KV FR ++F PFV E+I+G++ S +K
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKSY 67
Query: 83 VHDS 86
+ S
Sbjct: 68 IRVS 71
>gi|134116478|ref|XP_773193.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255814|gb|EAL18546.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++ P GL + ++DI ED + G+G + KV FR ++F PFV E+I+G++ S +K
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTY 67
Query: 83 VHDS 86
+ S
Sbjct: 68 IRVS 71
>gi|58259847|ref|XP_567336.1| hypothetical protein CNJ01580 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57229386|gb|AAW45819.1| hypothetical protein CNJ01580 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 184
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++ P GL + ++DI ED + G+G + KV FR ++F PFV E+I+G++ S +K
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTY 67
Query: 83 VHDS 86
+ S
Sbjct: 68 IRVS 71
>gi|281208326|gb|EFA82502.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 267
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 2 LYDITKIEDSVIIPGDGASH--------------TKVFPNVGLCMMLYDITKIEDSVIIP 47
++ + IED V IP + ++ KV + GL + LYDI D+ +
Sbjct: 1 MFHLITIEDKVRIPPNQFNNEIQTIEDEIEKKYSNKVVIDGGLFIALYDILGTGDAYVYS 60
Query: 48 GDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
GDG SH V R VVF+PFV EI+ G I+ +++
Sbjct: 61 GDGGSHLLVRCRLVVFKPFVGEILEGFIKKSTRD 94
>gi|358054091|dbj|GAA99767.1| hypothetical protein E5Q_06470 [Mixia osmundae IAM 14324]
Length = 199
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
V +GLC+ LY+I + +++ GDG + K+ F VVF+P V E+++G++ S S E
Sbjct: 19 NNVVAGLGLCVTLYNIVDCSEGMVLYGDGKLYYKLVFDLVVFKPQVGEMLVGQVLSQSAE 78
Query: 82 GVHDS 86
G+ S
Sbjct: 79 GIRVS 83
>gi|302902820|ref|XP_003048726.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
gi|256729660|gb|EEU43013.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
Length = 199
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 2 LYDITKIEDSV-IIPGDGASHTK--------------VFPNVGLCMMLYDITKIEDSVII 46
++ +TKI D V I P D + +K V +GLC+ LYD+ + +I
Sbjct: 1 MFILTKIADLVQIAPADFSKRSKEAIEDNINAKYSNKVIQKIGLCICLYDLQWASEGLIG 60
Query: 47 PGDG-------ASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
G G + + VEFR VVFRPF E+++ +I + + EG++
Sbjct: 61 HGTGLVNVNADQAQSLVEFRMVVFRPFKGEVMMARISTSTPEGIY 105
>gi|291000977|ref|XP_002683055.1| predicted protein [Naegleria gruberi]
gi|284096684|gb|EFC50311.1| predicted protein [Naegleria gruberi]
Length = 196
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGD-GASHTKVEFRYVVF 63
+T +ED + + K+ P+VGLC+ +YD I D I P G + FR +VF
Sbjct: 23 VTAVEDEIHM----KYSNKILPDVGLCVSIYDFISIGDPHIYPNQQGNYFVEASFRLIVF 78
Query: 64 RPFVSEIIIGKIRSCSKE 81
+PFV EII G+I E
Sbjct: 79 KPFVGEIITGRIMGSDPE 96
>gi|221055818|ref|XP_002259047.1| RNA polymerase Rpb7 [Plasmodium knowlesi strain H]
gi|193809118|emb|CAQ39820.1| RNA polymerase Rpb7, putative [Plasmodium knowlesi strain H]
Length = 186
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV NVGLC+ LYDI ++++ I+ G G V FR V F+PF +EII G +++ G
Sbjct: 37 KVLQNVGLCVGLYDILEVKNREILKGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|359487930|ref|XP_003633678.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC8-like [Vitis vinifera]
Length = 101
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC + DI I+ PGD AS VEFR V+F FV +II K++ G
Sbjct: 37 KVVANLGLCSFVNDIRSIDGGFFFPGDSASTYTVEFRLVMFGLFVEDIITAKLKESDANG 96
Query: 83 VH 84
+
Sbjct: 97 LR 98
>gi|156098288|ref|XP_001615176.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax Sal-1]
gi|148804050|gb|EDL45449.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax]
Length = 186
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV NVGLC+ LYDI ++++ I+ G G V FR V F+PF +EII G +++ G
Sbjct: 37 KVLQNVGLCVGLYDILEVKNREILKGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|323452814|gb|EGB08687.1| hypothetical protein AURANDRAFT_25657 [Aureococcus anophagefferens]
Length = 219
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 17 DGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIR 76
D +V +VGLC+ D+ + D ++ P DG + K F +VFRPFV EI I
Sbjct: 31 DAKYAARVVNDVGLCVCCRDVLDVGDGLVYPLDGGATYKATFSLLVFRPFVGEIATATIV 90
Query: 77 SCSKEGVHDS 86
+ EGV S
Sbjct: 91 ASGPEGVRAS 100
>gi|389583597|dbj|GAB66331.1| RNA polymerase Rpb7 N-terminal domain containing protein, partial
[Plasmodium cynomolgi strain B]
Length = 186
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV NVGLC+ LYDI ++++ I+ G G V FR V F PF +EII G +++ G
Sbjct: 37 KVLQNVGLCVGLYDILEVKNREILKGTGEIRFDVIFRLVYFHPFENEIIEGFVKNSDSNG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|145347797|ref|XP_001418348.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578577|gb|ABO96641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 208
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
GLC+ LY IT I ++ G+G +V F+ V+F+PF E+I G + S G H S
Sbjct: 45 GLCVTLYSITNISGGTVLAGEGCVCFEVTFKVVLFKPFAGEVIEGTLLSADAHGAHVS 102
>gi|50287313|ref|XP_446086.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525393|emb|CAG59010.1| unnamed protein product [Candida glabrata]
gi|114049595|emb|CAL07955.1| hypothetical protein [Candida glabrata]
Length = 171
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD +IE I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIEIERGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|366988751|ref|XP_003674143.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS
4309]
gi|342300006|emb|CCC67762.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS
4309]
Length = 171
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD +IE I+P DG++ +V++R +VF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDKIEIERGRILPTDGSAEFQVKYRAIVFKPFKGEVVDGTVVSCSQHG 98
>gi|68070099|ref|XP_676961.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496887|emb|CAH99916.1| conserved hypothetical protein [Plasmodium berghei]
Length = 162
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N GLC+ LYDI +I++ I+ G G V FR V F P+ +EII G ++S +G
Sbjct: 13 KVVQNAGLCVGLYDILEIKNKEILKGCGTIRLNVIFRLVFFHPYENEIIEGYVKSSDHKG 72
Query: 83 V 83
+
Sbjct: 73 I 73
>gi|444319100|ref|XP_004180207.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS
6284]
gi|387513249|emb|CCH60688.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS
6284]
Length = 171
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD IE IIP DG++ V +R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDKIDIERGRIIPTDGSAEFTVRYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|350296038|gb|EGZ77015.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
[Neurospora tetrasperma FGSC 2509]
Length = 193
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV VGL + L+D+T + I G G + VEF VVFRPF E+I+ +I ++E
Sbjct: 36 NKVVQKVGLFVCLWDVTWTSEGQIGHGSGLVNVNVEFEMVVFRPFKHEVILARITHQTEE 95
Query: 82 GVH 84
G++
Sbjct: 96 GIY 98
>gi|365981979|ref|XP_003667823.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS
421]
gi|343766589|emb|CCD22580.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS
421]
Length = 171
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD +IE I+P DG++ V++R +VF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDKIEIERGRILPTDGSAEFNVKYRAIVFKPFKGEVVDGTVVSCSQHG 98
>gi|156835988|ref|XP_001642239.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112712|gb|EDO14381.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 171
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD +IE I+P DG++ V++R +VF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDKIEIERGRILPTDGSAEFTVKYRAIVFKPFKGEVVDGTVVSCSQHG 98
>gi|110590860|pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|336273894|ref|XP_003351701.1| hypothetical protein SMAC_00243 [Sordaria macrospora k-hell]
gi|380095980|emb|CCC06027.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 193
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 8 IEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
IED++ + KV VGL + L+D+T + I G G + VEF VVFRPF
Sbjct: 26 IEDNI----NAKYANKVVQKVGLFICLWDVTWTSEGQIGHGTGLVNVNVEFEMVVFRPFK 81
Query: 68 SEIIIGKIRSCSKEGVH 84
E+++ +I ++EG++
Sbjct: 82 HEVMLARITHQTEEGIY 98
>gi|83286669|ref|XP_730262.1| RNA polymerase Rpb7 [Plasmodium yoelii yoelii 17XNL]
gi|23489936|gb|EAA21827.1| RNA polymerase Rpb7, N-terminal domain, putative [Plasmodium
yoelii yoelii]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N GLC+ LYDI +I++ I+ G G V FR V F P+ +EII G ++S G
Sbjct: 37 KVVQNAGLCVGLYDILEIKNKEILKGCGTIRLNVIFRLVFFHPYENEIIEGYVKSSDHNG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|237838547|ref|XP_002368571.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
gi|211966235|gb|EEB01431.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
Length = 1215
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N GL + Y++ +I+ + I GDG++ KVEF V FRPF EI+ G + G
Sbjct: 1052 KVVVNCGLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFRPFQGEILEGTLMHSDNHG 1111
Query: 83 VHDS 86
+ S
Sbjct: 1112 LRIS 1115
>gi|440297775|gb|ELP90416.1| DNA-directed RNA polymerase III subunit RPC8, putative [Entamoeba
invadens IP1]
Length = 226
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
G+ + LYDI KI D VI+ G G + F +VVF PFV+E+I GK+ G+
Sbjct: 42 GIGVTLYDIIKISDGVIVNGTGNVFYDITFNFVVFSPFVNELIQGKVLRSLATGIQ 97
>gi|388579438|gb|EIM19762.1| hypothetical protein WALSEDRAFT_55467 [Wallemia sebi CBS 633.66]
Length = 223
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 10 DSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSE 69
DS++ + K+ ++GL + L+ + + I +G + K +F ++FRPFV E
Sbjct: 24 DSIVDSINYKYSNKIIQDLGLALCLHSLLDSSEGFIQHSNGNVYYKCKFNLIIFRPFVGE 83
Query: 70 IIIGKIRSCSKEGVHDS 86
I+I K++S S+EG+ S
Sbjct: 84 ILIAKVKSTSEEGITAS 100
>gi|221505857|gb|EEE31502.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1221
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N GL + Y++ +I+ + I GDG++ KVEF V FRPF EI+ G + G
Sbjct: 1058 KVVVNCGLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFRPFQGEILEGTLMHSDNHG 1117
Query: 83 VHDS 86
+ S
Sbjct: 1118 LRIS 1121
>gi|221484160|gb|EEE22456.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1214
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N GL + Y++ +I+ + I GDG++ KVEF V FRPF EI+ G + G
Sbjct: 1051 KVVVNCGLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFRPFQGEILEGTLMHSDSHG 1110
Query: 83 VHDS 86
+ S
Sbjct: 1111 LRIS 1114
>gi|365761292|gb|EHN02956.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 150
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 25 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 77
>gi|401624138|gb|EJS42207.1| rpb7p [Saccharomyces arboricola H-6]
Length = 171
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|323309699|gb|EGA62907.1| Rpb7p [Saccharomyces cerevisiae FostersO]
gi|323338133|gb|EGA79367.1| Rpb7p [Saccharomyces cerevisiae Vin13]
gi|392300523|gb|EIW11614.1| Rpb7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 150
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 25 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 77
>gi|401838577|gb|EJT42119.1| RPB7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 171
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|398366567|ref|NP_010692.3| Rpb7p [Saccharomyces cerevisiae S288c]
gi|464672|sp|P34087.1|RPB7_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName: Full=B16
gi|30749743|pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
gi|34810559|pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
gi|58177170|pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679450|pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
gi|61679467|pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679508|pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
gi|61679521|pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|61679566|pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679568|pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|83754249|pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|134104680|pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex A
gi|134104695|pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex B
gi|134104716|pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104728|pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104740|pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex D
gi|160877779|pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172233|pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172246|pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613468|pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983596|pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104517|pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839447|pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839462|pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839477|pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839492|pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839507|pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
gi|254839522|pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839537|pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471952|pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471967|pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618771|pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053969|pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
gi|325053984|pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634544|pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|353251639|pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380842|pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid
gi|359546296|pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid
gi|359546314|pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid
gi|359546331|pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546348|pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546365|pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546382|pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid
gi|359546398|pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546415|pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977885|pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid
gi|374977900|pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
gi|380764985|pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145452|pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145465|pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase
Ii- Tfiib Complex
gi|300239|gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
gi|927335|gb|AAB64844.1| Rpb7p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|151942377|gb|EDN60733.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190404660|gb|EDV07927.1| RNA polymerase II dissociable subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256271208|gb|EEU06290.1| Rpb7p [Saccharomyces cerevisiae JAY291]
gi|259145642|emb|CAY78906.1| Rpb7p [Saccharomyces cerevisiae EC1118]
gi|285811422|tpg|DAA12246.1| TPA: Rpb7p [Saccharomyces cerevisiae S288c]
gi|323305480|gb|EGA59224.1| Rpb7p [Saccharomyces cerevisiae FostersB]
gi|323334047|gb|EGA75432.1| Rpb7p [Saccharomyces cerevisiae AWRI796]
gi|323349147|gb|EGA83378.1| Rpb7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355561|gb|EGA87382.1| Rpb7p [Saccharomyces cerevisiae VL3]
gi|349577455|dbj|GAA22624.1| K7_Rpb7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766199|gb|EHN07698.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 171
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|198421695|ref|XP_002128711.1| PREDICTED: similar to KIAA1665 protein isoform 2 [Ciona
intestinalis]
Length = 179
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MLYDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTK 55
L+++ + D+V + + KV N+G+C+ L+DI K EDS I PGDGASHTK
Sbjct: 16 WLFNV-NLNDAVKVELNRRLANKVVYNIGVCICLFDILKYEDSYIFPGDGASHTK 69
>gi|449297230|gb|EMC93248.1| hypothetical protein BAUCODRAFT_141757 [Baudoinia compniacensis
UAMH 10762]
Length = 214
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV VGLC+ + + K + +I G G + V+FR VVFRPF EII G I + ++ G
Sbjct: 37 KVIHKVGLCVGFHSLIKASEGLIGHGTGIVNVNVDFRVVVFRPFKGEIIRGVISASTENG 96
Query: 83 VHDS 86
+ S
Sbjct: 97 MQMS 100
>gi|254581916|ref|XP_002496943.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
gi|238939835|emb|CAR28010.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
Length = 171
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD IE I+P DG++ V +R +VF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDRIDIERGRILPTDGSAEFTVRYRAIVFKPFKGEVVDGTVVSCSQHG 98
>gi|367008802|ref|XP_003678902.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
gi|359746559|emb|CCE89691.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
Length = 171
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD IE I+P DG++ V +R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDKIDIERGRILPTDGSADFIVRYRAVVFKPFRGEVVDGTVVSCSQHG 98
>gi|148672600|gb|EDL04547.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_a
[Mus musculus]
Length = 148
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 56 VEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
+ FRYVVF PF+ EI+IGKI+ CS EGVH S
Sbjct: 14 IHFRYVVFHPFLDEILIGKIKGCSPEGVHVS 44
>gi|298204961|emb|CBI34268.3| unnamed protein product [Vitis vinifera]
Length = 101
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ + DI + G+ S VEFR V+FR FV EII K+ + G
Sbjct: 37 KVIANLGLCIFVNDIRSTACGFVFLGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNG 96
Query: 83 VHD 85
+
Sbjct: 97 LRS 99
>gi|359487938|ref|XP_002264240.2| PREDICTED: DNA-directed RNA polymerase III subunit rpc8 [Vitis
vinifera]
Length = 152
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GLC+ + DI + G+ S VEFR V+FR FV EII K+ + G
Sbjct: 37 KVIANLGLCIFVNDIRSTACGFVFLGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNG 96
Query: 83 V 83
+
Sbjct: 97 L 97
>gi|367005626|ref|XP_003687545.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS
4417]
gi|357525849|emb|CCE65111.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS
4417]
Length = 171
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD +IE I+ DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDKIEIERGRILATDGSAEFTVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>gi|258597195|ref|XP_001347734.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|254832590|gb|AAN35647.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 186
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV NVG C+ LYDI +I++ II G G KV FR V+F+PF +EII G ++S G
Sbjct: 37 KVIQNVGFCVGLYDIIEIKNKEIIKGSGEIRLKVIFRLVIFQPFENEIIEGFVKSSDSNG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|453089152|gb|EMF17192.1| DNA-directed RNA polymerase III 25 kd polypeptide [Mycosphaerella
populorum SO2202]
Length = 224
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV VGLC+ + + + +I G G + V+FR VVFRPF EI+ I S++G
Sbjct: 37 KVIHRVGLCIGFHSLISASEGLIGHGTGIVNVNVDFRLVVFRPFKGEIMRATITQSSQQG 96
Query: 83 VHDS 86
++ S
Sbjct: 97 IYLS 100
>gi|354508066|ref|XP_003516074.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Cricetulus griseus]
Length = 117
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 58 FRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
FRYVVF PF+ EI+IGKI+ CS EGVH S
Sbjct: 2 FRYVVFHPFLDEILIGKIKGCSPEGVHVS 30
>gi|297527594|ref|YP_003669618.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM
12710]
gi|297256510|gb|ADI32719.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM
12710]
Length = 185
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 1 MLYDITKIEDSVIIPGDGAS---------------HTKVFPNVGLCMMLYDITKIEDSVI 45
M+Y + +I D V IP + S + N+G+ + + D+ I
Sbjct: 1 MVYRLYRIRDVVRIPPEKFSKPLEEAAWEELRQTYEGMITKNLGIIVTVLDVNVDPQGKI 60
Query: 46 IPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
IPGDGA++ K EF + F PF+ E++ G+I + G
Sbjct: 61 IPGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHG 97
>gi|397638385|gb|EJK73047.1| hypothetical protein THAOC_05356 [Thalassiosira oceanica]
Length = 314
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 22 TKVFPNVGLCMMLYDI-TKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSK 80
K+ +VGL + Y +I +++P DG +H +V F+ +VFRPFV E++IG + ++
Sbjct: 36 NKIIMDVGLVICPYGPPLEIGHGMLVPADGGAHHQVIFQCLVFRPFVGEVLIGTVTESNE 95
Query: 81 EGV 83
G+
Sbjct: 96 AGI 98
>gi|403367976|gb|EJY83816.1| DNA-directed RNA polymerase, subunit E' [Oxytricha trifallax]
Length = 215
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N G+C+ + I K+ + +I+ G+G+ KVE V+FRP VSEI+ KI ++
Sbjct: 35 NKVLANEGICVAIKSI-KVLEKIIVVGEGSVQCKVETNLVIFRPIVSEILNAKITLQNEY 93
Query: 82 GV 83
G+
Sbjct: 94 GI 95
>gi|398411157|ref|XP_003856922.1| hypothetical protein MYCGRDRAFT_31431, partial [Zymoseptoria
tritici IPO323]
gi|339476807|gb|EGP91898.1| hypothetical protein MYCGRDRAFT_31431 [Zymoseptoria tritici
IPO323]
Length = 223
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV VGLC+ + + + +I G G + V+FR +VFRPF EII I + G
Sbjct: 32 KVIHKVGLCLGFHSLVSTSEGLIGHGTGIVNVNVDFRLIVFRPFKGEIIRATITQSNPTG 91
Query: 83 VH 84
++
Sbjct: 92 IY 93
>gi|255717771|ref|XP_002555166.1| KLTH0G02926p [Lachancea thermotolerans]
gi|238936550|emb|CAR24729.1| KLTH0G02926p [Lachancea thermotolerans CBS 6340]
Length = 171
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ + +IE I+PGDG++ V++R VV++PF E++ G + SC+ G
Sbjct: 46 LCVLDCENVEIERGRILPGDGSAEFTVKYRAVVWKPFKGEVVDGVVSSCTNLG 98
>gi|126465733|ref|YP_001040842.1| DNA-directed RNA polymerase subunit E' [Staphylothermus marinus
F1]
gi|126014556|gb|ABN69934.1| DNA-directed RNA polymerase, subunit E' [Staphylothermus marinus
F1]
Length = 185
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 1 MLYDITKIEDSVIIPGDG---------------ASHTKVFPNVGLCMMLYDITKIEDSVI 45
M+Y + +I D V IP + + + N+G+ + + D+ +
Sbjct: 1 MVYRLYRIRDVVRIPPEKFNKPLEEAAWEELRQSYEGMITKNLGIIVTVLDVKVDPQGKV 60
Query: 46 IPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
IPGDGA++ K EF + F PF+ E++ G+I + G
Sbjct: 61 IPGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHG 97
>gi|209881416|ref|XP_002142146.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209557752|gb|EEA07797.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 198
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV NVGL + L + ++ +VI DG+ + FR +VF+PF+SEII G + +
Sbjct: 53 NKVIKNVGLVISLVEFDYVDHAVIDSDDGSLYFNTTFRIIVFKPFISEIIEGIVINSDST 112
Query: 82 GV 83
G+
Sbjct: 113 GL 114
>gi|218884656|ref|YP_002429038.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus
kamchatkensis 1221n]
gi|218766272|gb|ACL11671.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus
kamchatkensis 1221n]
Length = 190
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 28 VGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
+G+ + + D+ E+ I+PGDGA++ VE +VF PF+ E++ G+ + +K G++
Sbjct: 50 LGIIVTIIDVKVDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIY 106
>gi|452990025|gb|EME89780.1| hypothetical protein MYCFIDRAFT_213792 [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV VGLC+ + + + +I G G + V+FR +VFRPF EII I + G
Sbjct: 37 KVIHKVGLCVGFHSLVSASEGLIGHGTGIVNVNVDFRLIVFRPFKGEIIRATITQSNMTG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|390939143|ref|YP_006402881.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192250|gb|AFL67306.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 190
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 28 VGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
+G+ + + D+ E+ I+PGDGA++ VE +VF PF+ E++ G+ + +K G++
Sbjct: 50 LGIIVTIIDVKVDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIY 106
>gi|223479016|ref|YP_002582922.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
gi|214034242|gb|EEB75068.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
Length = 186
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G+ + + D+ ++ + VI+PGDGA++ +V F +V++PF+ E++ G++ + G
Sbjct: 43 GVVLAVLDVEEVSEGVIVPGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYG 96
>gi|429327460|gb|AFZ79220.1| hypothetical protein BEWA_020670 [Babesia equi]
Length = 179
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++ GLC++L D + I+P +G +H K FR +VF P +++I+ G+I C E
Sbjct: 37 RIIFGTGLCILLDDNLLKCEPRILPSEGQAHYKTHFRLLVFSPNINQILKGQIIDCDSES 96
Query: 83 V 83
+
Sbjct: 97 I 97
>gi|452847392|gb|EME49324.1| hypothetical protein DOTSEDRAFT_163611 [Dothistroma septosporum
NZE10]
Length = 222
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV VGLC+ + + + +I G G + V+FR +VFRPF EII I G
Sbjct: 37 KVIHKVGLCVGFHSLMSASEGLIGHGTGTVNVNVDFRLIVFRPFRGEIIRATITRADVSG 96
Query: 83 V 83
+
Sbjct: 97 L 97
>gi|240102556|ref|YP_002958865.1| DNA-directed RNA polymerase subunit E' [Thermococcus
gammatolerans EJ3]
gi|239910110|gb|ACS33001.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Thermococcus
gammatolerans EJ3]
Length = 186
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 35/47 (74%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + D+ ++ + VI+PGDGA++ +V F +V++PF+ E++ G++
Sbjct: 43 GVVLAVLDVEEVSEGVIVPGDGATYHEVVFNVLVWQPFMHEVVEGEV 89
>gi|320101521|ref|YP_004177113.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus mucosus DSM
2162]
gi|319753873|gb|ADV65631.1| DNA-directed RNA polymerase, subunit E' [Desulfurococcus mucosus
DSM 2162]
Length = 189
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 28 VGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
+G+ + + D E+ I+PGDGA++ VE +VF PF+ E++ G+ + +K G++
Sbjct: 50 LGIVVTIVDANVDENGRILPGDGATYHDVEMYALVFTPFIKEVVEGEAVTVTKSGIY 106
>gi|296243100|ref|YP_003650587.1| DNA-directed RNA polymerase subunit E' [Thermosphaera aggregans DSM
11486]
gi|296095684|gb|ADG91635.1| DNA-directed RNA polymerase, subunit E' [Thermosphaera aggregans
DSM 11486]
Length = 192
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 45 IIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
IIPGDGA++ VEF +VF PF+ E++ G + + +K G++
Sbjct: 70 IIPGDGATYHNVEFEALVFHPFLKEVVEGDVVTVTKNGLY 109
>gi|389860871|ref|YP_006363111.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
gi|388525775|gb|AFK50973.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
Length = 175
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
N GL + + D+ E II GDGA++ VEF + F PF+ E++ G++ + ++ G+
Sbjct: 41 NAGLVVAILDVKVSEYGRIIHGDGATYHDVEFTALTFDPFLKEVVEGEVLNVTESGI 97
>gi|374633213|ref|ZP_09705580.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
gi|373524697|gb|EHP69574.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
Length = 176
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++F ++GL + + E+ +I+ GDGA++ +VEF + F P + E+I G I G
Sbjct: 37 RLFKDLGLVLTVTKAKVSEEGMIVFGDGATYHEVEFELLTFSPIIQEVIEGDITQVDNYG 96
Query: 83 VH 84
V+
Sbjct: 97 VY 98
>gi|195998784|ref|XP_002109260.1| hypothetical protein TRIADDRAFT_53108 [Trichoplax adhaerens]
gi|190587384|gb|EDV27426.1| hypothetical protein TRIADDRAFT_53108 [Trichoplax adhaerens]
Length = 160
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHT 54
KV NVGLC+ +YDI I DS ++PGDG+S T
Sbjct: 36 NKVVHNVGLCIGVYDILSISDSYVLPGDGSSFT 68
>gi|159041701|ref|YP_001540953.1| DNA-directed RNA polymerase subunit E' [Caldivirga maquilingensis
IC-167]
gi|157920536|gb|ABW01963.1| DNA-directed RNA polymerase [Caldivirga maquilingensis IC-167]
Length = 211
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV +G+ + ++D+ + VI+ GDGA++ KV F+ +VF P ++EI+ G + + G
Sbjct: 53 KVDRELGVFIAVFDVKVDKRGVIVYGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYG 112
Query: 83 VH 84
H
Sbjct: 113 AH 114
>gi|432328391|ref|YP_007246535.1| DNA-directed RNA polymerase subunit E' [Aciduliprofundum sp.
MAR08-339]
gi|432135100|gb|AGB04369.1| DNA-directed RNA polymerase subunit E' [Aciduliprofundum sp.
MAR08-339]
Length = 196
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+ +++ + K+ + +I+PGDGA + KV F+ + F P + E++IG + K G
Sbjct: 55 IIVLILSLEKVGEGIIVPGDGAVYQKVRFKALAFHPELQEVVIGDVVDVLKFG 107
>gi|409096803|ref|ZP_11216827.1| DNA-directed RNA polymerase subunit E' [Thermococcus zilligii
AN1]
Length = 186
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + D+ +I + VI+PGDGA++ +V F +V++P + EI+ G++
Sbjct: 43 GVVLAVMDVEEISEGVIVPGDGATYHEVVFNVLVWQPHMHEIVEGEV 89
>gi|45198920|ref|NP_985949.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|44984949|gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|374109179|gb|AEY98085.1| FAFR402Cp [Ashbya gossypii FDAG1]
Length = 171
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ + +IE I+P DG++ V++R VV++PF E++ G + SC+ G
Sbjct: 46 LCVLDSENIEIERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLG 98
>gi|146304987|ref|YP_001192303.1| DNA-directed RNA polymerase subunit E' [Metallosphaera sedula DSM
5348]
gi|145703237|gb|ABP96379.1| DNA-directed RNA polymerase, subunit E' [Metallosphaera sedula DSM
5348]
Length = 176
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++F ++GL + + E+ +II GDGA++ +VEF + F P + E+I G I G
Sbjct: 37 RLFKDLGLVLSVIRADVNEEGMIIFGDGATYHEVEFELLTFSPMIQEVIEGDITQVDNYG 96
Query: 83 VHDSQSSNQPEQPISD--------STVKDILKYFAEKDKP-----DPVRDFLMGAIAPAL 129
++ + +S +V+ IL EK K D VR +M + A
Sbjct: 97 IYVNMGPMDGLVHVSQIGDDNYKFDSVRGIL--IGEKSKKTFQKGDMVRARIMTISSTAS 154
Query: 130 RSLPR 134
LPR
Sbjct: 155 NRLPR 159
>gi|123400742|ref|XP_001301713.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121882930|gb|EAX88783.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 206
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 24 VFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
V PN GL + L+DI K + +P ++ + FRY+VF P + + KI +++G+
Sbjct: 46 VLPNYGLLIDLFDIVKAYECKSLPDIPVAYVRCVFRYIVFNPPIGSVWTAKISGTNEDGI 105
>gi|363752353|ref|XP_003646393.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890028|gb|AET39576.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
Length = 171
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ + +IE I+P DG++ V++R VV++PF E++ G + SC+ G
Sbjct: 46 LCVLDCENIEIERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLG 98
>gi|330833934|ref|YP_004408662.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
gi|329566073|gb|AEB94178.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
Length = 176
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++F ++GL + + E+ +I+ GDGA++ +VEF + F P + E++ G I G
Sbjct: 37 RLFKDLGLVLTVIKANVSEEGMIVFGDGATYHEVEFELLTFLPIIQEVVEGDITQVDNYG 96
Query: 83 VH 84
++
Sbjct: 97 IY 98
>gi|50305083|ref|XP_452500.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641633|emb|CAH01351.1| KLLA0C06787p [Kluyveromyces lactis]
Length = 171
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ + +IE I+P DG++ V++R VV++PF E++ G + SC+ G
Sbjct: 46 LCVLDCENIEIERGRILPTDGSAEFTVKYRAVVWKPFKGEVLDGIVSSCTNLG 98
>gi|298204967|emb|CBI34274.3| unnamed protein product [Vitis vinifera]
Length = 195
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGAS----HTKVEFRY-------VVFRPFVSEII 71
KV N+GLC+ + DI I+ + PGD AS +K+ F Y V+F FV +II
Sbjct: 37 KVVANLGLCIFVNDIRSIDGGFVFPGDSASTCILKSKIWFSYFIYLGLLVMFGLFVKDII 96
Query: 72 IGKIRSCSKEGVHDSQSS 89
K++ ++ + S+
Sbjct: 97 TAKLKRIGRQWLKKLCST 114
>gi|342873576|gb|EGU75740.1| hypothetical protein FOXB_13759 [Fusarium oxysporum Fo5176]
Length = 138
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 53 HTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
H EFR VVFRPF E++IG+IRS + G++
Sbjct: 12 HRAAEFRMVVFRPFKGEVMIGRIRSSTPAGIN 43
>gi|15920582|ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str.
7]
gi|15621365|dbj|BAB65360.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str.
7]
Length = 183
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 21 HTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSK 80
K+ ++GL + + D E+ II GDGA++ +V F + F P + E++ G++
Sbjct: 35 QEKMIKDLGLVLAVLDAKVSEEGYIIFGDGATYHEVSFEMLAFVPIIQEVVEGEVNQVDN 94
Query: 81 EGVH 84
GV+
Sbjct: 95 YGVY 98
>gi|20094887|ref|NP_614734.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri
AV19]
gi|19888120|gb|AAM02664.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri
AV19]
Length = 183
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 6 TKIEDSVIIPGDGASHTKVFPN------VGLCMMLYDITKIEDSVIIPGDGASHTKVEFR 59
+ +ED+V+ + K+F +G + + +I +E+ I PGDGAS+ +V FR
Sbjct: 20 SDVEDAVLKALENDVEGKLFREDDTGEPIGFVVFVDEILDVENEGIFPGDGASYHRVRFR 79
Query: 60 YVVFRP 65
+VFRP
Sbjct: 80 ALVFRP 85
>gi|70606624|ref|YP_255494.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
DSM 639]
gi|449066846|ref|YP_007433928.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449069118|ref|YP_007436199.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920767|sp|P39466.2|RPOE_SULAC RecName: Full=DNA-directed RNA polymerase subunit E
gi|68567272|gb|AAY80201.1| DNA-directed RNA polymerase subunit E [Sulfolobus acidocaldarius
DSM 639]
gi|449035354|gb|AGE70780.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449037626|gb|AGE73051.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
Length = 183
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+ ++G+ + + + E+ II GDGA++ +VEF +V+ P + E+I G++ G
Sbjct: 37 KLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYG 96
Query: 83 VH 84
V+
Sbjct: 97 VY 98
>gi|253743778|gb|EET00085.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia intestinalis ATCC 50581]
Length = 214
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEI 70
+V N G+C+++ IT + + I+ D ++ V F + FRP++ EI
Sbjct: 37 RVLANCGICLLIEKITNLSEQRIVQNDCNTYVTVHFSVIAFRPYIGEI 84
>gi|307594773|ref|YP_003901090.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
gi|307549974|gb|ADN50039.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
Length = 196
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 37/53 (69%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
+V +VG+ + ++D+ + V+I GDGA++ +V F+ +V+ P ++E++ G++
Sbjct: 37 RVERDVGVYVAIFDVEVSKRGVVIFGDGATYNRVRFKALVYTPLINEVVEGEV 89
>gi|308162256|gb|EFO64663.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia P15]
Length = 215
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEI 70
+V N G+C+++ IT + + II D ++ V F + FRP++ EI
Sbjct: 37 RVLTNCGICLLIERITNLSEQRIIHNDCNTYVTVCFSIIAFRPYIGEI 84
>gi|415999|emb|CAA53164.1| DNA-directed RNA polymerase [Sulfolobus acidocaldarius]
Length = 248
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+ ++G+ + + + E+ II GDGA++ +VEF +V+ P + E+I G++ G
Sbjct: 37 KLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYG 96
Query: 83 VH 84
V+
Sbjct: 97 VY 98
>gi|341582210|ref|YP_004762702.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
gi|340809868|gb|AEK73025.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
Length = 186
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G+ + + D+ +I VI+PGDGA++ +V F +V++P + E++ G++ + G
Sbjct: 43 GVVLAILDVDEIGQGVIVPGDGATYHEVVFNVLVWKPEMHEVVEGEVIDVAPYG 96
>gi|390960923|ref|YP_006424757.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
gi|390519231|gb|AFL94963.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
Length = 185
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 33/47 (70%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + D+ +I VI+PGDGA++ +V F +V++P + E++ G++
Sbjct: 43 GVVLAVMDVEEIGQGVIVPGDGATYHEVVFNVLVWKPEMHEVVDGEV 89
>gi|183230197|ref|XP_656629.2| DNA-directed RNA polymerase III subunit [Entamoeba histolytica
HM-1:IMSS]
gi|169803023|gb|EAL51243.2| DNA-directed RNA polymerase III subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407039875|gb|EKE39862.1| DNA-directed RNA polymerase III subunit, putative [Entamoeba
nuttalli P19]
gi|449705760|gb|EMD45744.1| DNA-directed RNA polymerase III subunit, putative [Entamoeba
histolytica KU27]
Length = 236
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 2 LYDITKIEDSVIIPGDGASH--------------TKVFPNVGLCMMLYDITKIEDSVIIP 47
+Y I++ DS +P + H K+ G+ + LYDI + I
Sbjct: 1 MYIISQFNDSFKVPPNKLEHIIVSIIDSINTKYQNKMIEGKGIGVTLYDIVSMTTPTIAI 60
Query: 48 GDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
G G + +V F +++F PF E+I G++ G+
Sbjct: 61 GTGDVYYEVVFNFIIFSPFQGELIEGRVLRSLPSGIQ 97
>gi|159117083|ref|XP_001708762.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia ATCC 50803]
gi|157436875|gb|EDO81088.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia ATCC 50803]
Length = 215
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEI 70
+V N G+C+++ IT + + I+ D ++ V F + FRP++ EI
Sbjct: 37 RVLANCGICLLIERITNLSEQRIVHNDCNTYVTVCFSIIAFRPYIGEI 84
>gi|332796396|ref|YP_004457896.1| DNA-directed RNA polymerase RpoE [Acidianus hospitalis W1]
gi|332694131|gb|AEE93598.1| DNA-directed RNA polymerase, RpoE [Acidianus hospitalis W1]
Length = 175
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+F ++GL + + E+ II GDGA++ +VEF + + P + E++ G + G
Sbjct: 37 KIFKDLGLVLGVLSAKASEEGQIIFGDGATYHEVEFELLAYVPALQEVVEGTVAEVDNYG 96
Query: 83 VH 84
++
Sbjct: 97 IY 98
>gi|255513911|gb|EET90176.1| DNA-directed RNA polymerase [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 195
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
K+ ++GL + ++ I I D I PGD ++H VE+ + + P V E++ G +
Sbjct: 37 KIDKDIGLIVAIFGIKDITDGTIYPGDPSTHHGVEYDALTYMPKVGEVVAGDV 89
>gi|212225065|ref|YP_002308301.1| DNA-directed RNA polymerase subunit E' [Thermococcus onnurineus
NA1]
gi|212010022|gb|ACJ17404.1| DNA-directed RNA polymerase, subunit E' [Thermococcus onnurineus
NA1]
Length = 188
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G+ + + D+ +I V++PGDGA++ +V F +V++P + E++ G++ + G
Sbjct: 43 GVILAVMDVEEISQGVVVPGDGATYHEVVFDVLVWKPEMHEVVEGEVIDVAPYG 96
>gi|449297101|gb|EMC93119.1| hypothetical protein BAUCODRAFT_228826 [Baudoinia compniacensis
UAMH 10762]
Length = 171
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
L + + DI + + ++PG G + V FR +V+RPF E++ G + S G
Sbjct: 43 LIIAIIDIEDVSEPKVVPGSGLAQYDVSFRAIVWRPFRGEVVDGLVSSVISGG 95
>gi|45358003|ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|340623628|ref|YP_004742081.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
gi|44920760|emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|339903896|gb|AEK19338.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
Length = 187
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 2 LYDITKIEDSVIIP----GDGASHT--KVF---------PNVGLCMMLYDITKIEDSVII 46
+Y I KI D+V IP G+ S +V ++G + + D+ + D II
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSII 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
GDGA++ + EF + + P + E++ G+I
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEI 89
>gi|167385494|ref|XP_001737370.1| DNA-directed RNA polymerase III subunit RPC8 [Entamoeba dispar
SAW760]
gi|165899852|gb|EDR26345.1| DNA-directed RNA polymerase III subunit RPC8, putative [Entamoeba
dispar SAW760]
Length = 236
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 2 LYDITKIEDSVIIPGDGASH--------------TKVFPNVGLCMMLYDITKIEDSVIIP 47
+Y I++ DS +P + H K+ G+ + LYDI + I
Sbjct: 1 MYIISQFNDSFKVPPNKLEHILVSIIDSINSKYQNKMIEGKGIGVTLYDIVSMTAPTIAI 60
Query: 48 GDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
G G + +V F V+F PF E+I G++ G+
Sbjct: 61 GTGDVYYEVVFNLVIFSPFQGELIEGRVLRSLPSGIQ 97
>gi|453089186|gb|EMF17226.1| DNA-directed RNA polymerase II subunit RPB7 [Mycosphaerella
populorum SO2202]
Length = 171
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSS 89
+ + + +I +I + V++PG G + + +R +V+RPF E++ G + S G +
Sbjct: 43 MIVQIIEIDEISEPVLVPGTGMAKYTLSYRAIVWRPFRGEVVDGMVTSVVNNGFFVDVGA 102
Query: 90 NQPEQPISDSTVKDILKYFAEKDKP 114
+S + + LKY E P
Sbjct: 103 --LSVFVSKAMIPGALKYTVEGSTP 125
>gi|242398022|ref|YP_002993446.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus
MM 739]
gi|242264415|gb|ACS89097.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus
MM 739]
Length = 187
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 33/47 (70%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + ++ +I + VIIPGDGA++ V F +V++P + E++ G++
Sbjct: 43 GVVLAVLEVHEISEGVIIPGDGATYHDVVFDVLVWKPEMHEVVEGEV 89
>gi|18976628|ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
3638]
gi|397650754|ref|YP_006491335.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
gi|18892197|gb|AAL80380.1| DNA-directed RNA polymerase, subunit e' [Pyrococcus furiosus DSM
3638]
gi|393188345|gb|AFN03043.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
Length = 189
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + ++ I+D +IIPGDGA++ +V F +V+ P + E++ G +
Sbjct: 43 GVILSILEVKDIKDGIIIPGDGATYHEVVFDVLVWEPKIHEVVEGYV 89
>gi|410720722|ref|ZP_11360075.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
gi|410600433|gb|EKQ54961.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
Length = 194
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 2 LYDITKIEDSVIIP--------GDGASHT-------KVFPNVGLCMMLYDITKIEDSVII 46
+Y I+KIED+V IP D A K+ +GL + + DI +I +I
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNDVAIEILNEGYVGKIDKKMGLMVTVKDIEEIGVGKVI 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
GDGA++ +V F + F+P + EI+ G++ ++ G
Sbjct: 61 MGDGAAYHEVVFTALFFKPELHEIVEGEVIEVTEFG 96
>gi|134046224|ref|YP_001097709.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C5]
gi|132663849|gb|ABO35495.1| DNA-directed RNA polymerase, subunit E' [Methanococcus
maripaludis C5]
Length = 187
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 2 LYDITKIEDSVIIP----GDGASHT--KVF---------PNVGLCMMLYDITKIEDSVII 46
+Y I KI D+V IP G+ S +V ++G + + D+ ++ D II
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDEVSDGSII 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
GDGA++ + EF + + P + E++ G+I
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEI 89
>gi|408382504|ref|ZP_11180048.1| DNA-directed RNA polymerase subunit E' [Methanobacterium
formicicum DSM 3637]
gi|407814859|gb|EKF85482.1| DNA-directed RNA polymerase subunit E' [Methanobacterium
formicicum DSM 3637]
Length = 194
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 2 LYDITKIEDSVIIPG---------------DGASHTKVFPNVGLCMMLYDITKIEDSVII 46
+Y I+KIED+V IP + + K+ +GL + + DI +I +I
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNEVAIEIINESYVGKIDKKMGLMVTVKDIEEIGVGKVI 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
GDGA++ +V F + F+P + EI+ G++ ++ G
Sbjct: 61 MGDGAAYHEVVFNALFFKPELHEIVEGEVIEVTEFG 96
>gi|159904859|ref|YP_001548521.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C6]
gi|159886352|gb|ABX01289.1| DNA-directed RNA polymerase [Methanococcus maripaludis C6]
Length = 187
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 2 LYDITKIEDSVIIP----GDGASHT--KVF---------PNVGLCMMLYDITKIEDSVII 46
+Y I KI D+V IP G+ S +V ++G + + D+ + D II
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSII 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
GDGA++ + EF + + P + E++ G+I
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEI 89
>gi|156936879|ref|YP_001434675.1| DNA-directed RNA polymerase subunit E' [Ignicoccus hospitalis
KIN4/I]
gi|156565863|gb|ABU81268.1| DNA-directed RNA polymerase, subunit E' [Ignicoccus hospitalis
KIN4/I]
Length = 177
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 34/57 (59%)
Query: 28 VGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
+G+ + + D+ + I+PGDG ++ + F + F+P +E++ G + + +K G++
Sbjct: 42 LGIILTVTDVDISPEGYIVPGDGGTYHEATFTLLAFKPLRNEVVEGIVVNVTKNGIY 98
>gi|393248136|gb|EJD55643.1| hypothetical protein AURDEDRAFT_78882 [Auricularia delicata
TFB-10046 SS5]
Length = 170
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G + + D+ I +++PG G + +R +VF+PF E++ G + S K G
Sbjct: 43 GYIIAVIDLVDIGRGIVLPGSGQAEFVTRYRAIVFKPFKGEVVDGVVSSVLKMG 96
>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 188
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G + + DI I + II GDGA + V F+ +VF P + E+I GK+
Sbjct: 43 GSIVAITDIESIGEGHIIMGDGAVYYDVTFKAIVFMPMMQEVIEGKV 89
>gi|150403357|ref|YP_001330651.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C7]
gi|150034387|gb|ABR66500.1| DNA-directed RNA polymerase [Methanococcus maripaludis C7]
Length = 187
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 2 LYDITKIEDSVIIP----GDGASHT--KVF---------PNVGLCMMLYDITKIEDSVII 46
+Y I KI D+V IP G+ S +V +VG + + D+ + + II
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDVGFILSIVDVDNVSEGSII 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
GDGA++ + EF + + P + E++ G+I
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEI 89
>gi|408404449|ref|YP_006862432.1| DNA-directed RNA polymerase, subunit E` [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408365045|gb|AFU58775.1| DNA-directed RNA polymerase, subunit E` [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 196
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 2 LYDITKIEDSVIIPGDGASHT---------------KVFPNVGLCMMLYDITKIEDSVII 46
++ I + D V IP + +H+ + P+VG +M+ D ++
Sbjct: 1 MFAIVHMSDVVRIPPNRLTHSLKDAAIQILKEKYESMISPDVGYVIMITDADTSSVGKLV 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
GDGA++ KV F+ + F P + EI+ G++
Sbjct: 61 AGDGATYHKVTFKALTFYPKLQEIVEGEV 89
>gi|148642257|ref|YP_001272770.1| DNA-directed RNA polymerase subunit E' [Methanobrevibacter
smithii ATCC 35061]
gi|222444570|ref|ZP_03607085.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
DSM 2375]
gi|261350890|ref|ZP_05976307.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148551274|gb|ABQ86402.1| DNA-dependent RNA polymerase, subunit E, RpoE [Methanobrevibacter
smithii ATCC 35061]
gi|222434135|gb|EEE41300.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2375]
gi|288860228|gb|EFC92526.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 185
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 5 ITKIEDSVIIPG---------------DGASHTKVFPNVGLCMMLYDITKIEDSVIIPGD 49
+TKIED+V IP + + ++ +GL + + +I +I + +I GD
Sbjct: 1 MTKIEDTVRIPPYRFDDPLEEVAIQTLNDTYNGRLDKKLGLLICVNEIEEIGEGRLIMGD 60
Query: 50 GASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
GAS+ V F + F+P E+I G++ ++ G
Sbjct: 61 GASYHNVVFNAIFFKPEQQEVIDGEVIEIAEFG 93
>gi|302411694|ref|XP_003003680.1| DNA-directed RNA polymerase III subunit RPC8 [Verticillium
albo-atrum VaMs.102]
gi|261357585|gb|EEY20013.1| DNA-directed RNA polymerase III subunit RPC8 [Verticillium
albo-atrum VaMs.102]
Length = 135
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 50 GASHTKVEFRYVVFRPFVSEIIIGKIR 76
G + VEFR VVFRPF E+++G+IR
Sbjct: 4 GLVNVNVEFRLVVFRPFKGEVMLGRIR 30
>gi|307352259|ref|YP_003893310.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM
11571]
gi|307155492|gb|ADN34872.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM
11571]
Length = 189
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
++G+ + + +I I + IIPGDGA + VEF VV R + E+I G++ + G
Sbjct: 41 DIGIFIAVTEIHDIGEGDIIPGDGAVYYHVEFDAVVLRLAMQEVIEGEVVETTSFG 96
>gi|440632114|gb|ELR02033.1| DNA-directed RNA polymerase II subunit G [Geomyces destructans
20631-21]
Length = 171
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 29 GLCMMLYDITKIEDSV------IIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G C Y I + D+ IIPG G + V +R VV+RPF +E + + + + G
Sbjct: 36 GTCTGQYYIISVMDTFNVSEGRIIPGSGLAEFTVRYRAVVWRPFKNETVDAIVTAVNPAG 95
Query: 83 VH 84
H
Sbjct: 96 FH 97
>gi|254166618|ref|ZP_04873472.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|289596245|ref|YP_003482941.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|197624228|gb|EDY36789.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|289534032|gb|ADD08379.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
Length = 199
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSE 69
+ +++ + K+++ +I+PGDGA + KV F+ + F P + E
Sbjct: 55 IIVLILSLEKVDEGIIVPGDGAVYQKVRFKALAFHPELQE 94
>gi|254167345|ref|ZP_04874197.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|197623608|gb|EDY36171.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
Length = 199
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSE 69
+ +++ + K+++ +I+PGDGA + KV F+ + F P + E
Sbjct: 55 IIVLILSLEKVDEGIIVPGDGAVYQKVRFKALAFHPELQE 94
>gi|384486857|gb|EIE79037.1| hypothetical protein RO3G_03742 [Rhizopus delemar RA 99-880]
Length = 134
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 32/52 (61%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSK 80
G + + ++++E ++PG G + KV ++ ++F+PF E++ G + + +K
Sbjct: 22 GYVVTVVSVSRLEKGKVLPGSGLAEFKVSYQAILFKPFKGEVLDGLVTTVNK 73
>gi|424812204|ref|ZP_18237444.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756426|gb|EGQ40009.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
Length = 185
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 8 IEDSVIIP------------GDGASHT---KVFPNVGLCMMLYDITKIEDSVIIPGDGAS 52
+ED+V IP DG T ++ P+VG+ + + ++ +E I P D
Sbjct: 3 VEDTVRIPPEHLGDDLQSSVEDGLRSTLAGRIEPDVGVFVAVEEVNTVEGGEIRPEDAGV 62
Query: 53 HTKVEFRYVVFRPFVSEIIIGK 74
H VEF+ +VF P + E++ G+
Sbjct: 63 HYDVEFQALVFEPELHEVVRGE 84
>gi|353236768|emb|CCA68756.1| probable DNA-directed RNA polymerase II chain Rpb7
[Piriformospora indica DSM 11827]
Length = 170
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G + + +I + +++PG+G + K ++ +VF+PF E++ G + + + G
Sbjct: 43 GFIIAVLEIIDVGPGIVLPGNGQAEFKTRYKAIVFKPFKGEVLDGVVTNVLRAG 96
>gi|303321536|ref|XP_003070762.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240110459|gb|EER28617.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 144
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 32 MMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
M YD+ + D +I G G + V FRPF E+I+GKI S +++G+
Sbjct: 1 MGFYDLLESSDGLIGHGTGLVNVNV------FRPFKGEVILGKITSGTEQGI 46
>gi|452848074|gb|EME50006.1| hypothetical protein DOTSEDRAFT_122159 [Dothistroma septosporum
NZE10]
Length = 167
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+ + + +I ++ + +++PG G + V +R +V+RPF E++ G + S G
Sbjct: 43 MIIQIIEIDEVSEPMLVPGTGMAKYTVSYRALVWRPFRGEVVDGLVTSVVSNG 95
>gi|449015716|dbj|BAM79118.1| RNA polymerase II subunit G [Cyanidioschyzon merolae strain 10D]
Length = 174
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 29 GLCMMLYDITKIEDSV----IIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
GL L + ++E + I+PG G + ++ ++ +V+RPF+ E++ G I S ++ GV
Sbjct: 41 GLYGYLLAVVEVERPLPPGRILPGTGHAIFRLRYKALVYRPFLGEVLDGVIASVTRHGV 99
>gi|448117713|ref|XP_004203323.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|448120153|ref|XP_004203906.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384191|emb|CCE78895.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384774|emb|CCE78309.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
Length = 173
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 31 CMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
CM + D+ K IIPG G + +V++R VV++PF E++ G + + +K G
Sbjct: 51 CMNI-DVGK---GTIIPGTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMG 98
>gi|213403826|ref|XP_002172685.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
gi|212000732|gb|EEB06392.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
Length = 172
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+C++ + I+ +IPG G + +V++R +++RPF E++ + + +K G
Sbjct: 47 ICVLDSNTIDIDKGKVIPGQGFAEFEVKYRAILWRPFRGEVVDAVVTTVNKMG 99
>gi|337284806|ref|YP_004624280.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
gi|334900740|gb|AEH25008.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
Length = 188
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 34/54 (62%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G+ + + ++ ++ D +I+PGDGA++ + F +V++P + E++ G + + G
Sbjct: 43 GVILAILEVKEVGDGIIVPGDGATYHEAVFDVLVWKPEMHEVVEGIVVDAAPFG 96
>gi|332022161|gb|EGI62478.1| hypothetical protein G5I_09158 [Acromyrmex echinatior]
Length = 334
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 50 GASHTKVEFRYVVFRPFVSEIIIGKIRSC-SKEGVHDSQSSNQPEQPI--SDSTVKDILK 106
G + + E R VFR + SE I + SC + +G+ S ++ PE P+ ++S ++ K
Sbjct: 236 GTNAVRAEVRVEVFRGYQSERIFA-VASCPAPQGLPSSNQTSTPETPLVPNESAIQVAFK 294
Query: 107 YFAEKDKPDPVRDFL-------MGAIAPALRSLPRHLF 137
Y + D+ FL + I P++ S+ R F
Sbjct: 295 YLSMVDQQTAFERFLFSLLDANIAVIPPSVLSINRRTF 332
>gi|162312460|ref|XP_001713072.1| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe 972h-]
gi|3334317|sp|O14459.1|RPB7_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|256599721|pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599733|pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529241|dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2529245|dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2708528|gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
gi|4091821|gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|159883968|emb|CAA20136.2| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe]
Length = 172
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+C++ + I+ ++PG G + +V++R V++RPF E++ + + +K G
Sbjct: 47 ICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMG 99
>gi|147806412|emb|CAN76547.1| hypothetical protein VITISV_042492 [Vitis vinifera]
Length = 214
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFR 59
KV ++GLC+ +YDI I+ + P DGAS + F+
Sbjct: 138 KVIADLGLCISVYDIRSIDGDFVFPADGASTYTIRFQ 174
>gi|14521883|ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
gi|5459103|emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
GE5]
gi|380742519|tpe|CCE71153.1| TPA: DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi
GE5]
Length = 188
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + ++ ++ D +I+PGDGA++ +V F +V+ P E++ G +
Sbjct: 43 GVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKQQEVVEGTV 89
>gi|124027330|ref|YP_001012650.1| DNA-directed RNA polymerase subunit E' [Hyperthermus butylicus
DSM 5456]
gi|123978024|gb|ABM80305.1| DNA-directed RNA polymerase subunit E'' [Hyperthermus butylicus
DSM 5456]
Length = 184
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 24 VFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
V P +G+ + ++D+ E+ +IPGDGA++ E+ + F+P
Sbjct: 38 VHPEMGVIVAIFDVKVSEEGRVIPGDGATYHDSEYSVLAFKPI 80
>gi|352681821|ref|YP_004892345.1| DNA-directed RNA polymerase subunit E' [Thermoproteus tenax Kra
1]
gi|350274620|emb|CCC81265.1| DNA-directed RNA polymerase, subunit E' [Thermoproteus tenax Kra
1]
Length = 189
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K F ++G + + D + VII GDGA++ K F + F P E++ G + S + G
Sbjct: 38 KSFRDLGYVVAVLDAKVNREGVIIFGDGATYHKAIFHILTFMPLDGEVVHGIVESAREVG 97
Query: 83 V 83
V
Sbjct: 98 V 98
>gi|3970666|emb|CAA36434.1| suppressor of variegation protein 3-7 [Drosophila melanogaster]
Length = 1169
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 870 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 921
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 922 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 951
>gi|70927512|ref|XP_736132.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56510408|emb|CAH80794.1| hypothetical protein PC000241.04.0 [Plasmodium chabaudi chabaudi]
Length = 75
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYV 61
KV N GLC+ LYDI +I++ I+ G G V FR V
Sbjct: 37 KVVQNAGLCVGLYDILEIKNKEILKGCGTIRLNVIFRLV 75
>gi|344304448|gb|EGW34680.1| RNA polymerase II subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 173
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 45 IIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
IIPG G + +V++R VV++PF E++ G + + +K G
Sbjct: 61 IIPGSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMG 98
>gi|375082560|ref|ZP_09729616.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis
DSM 5473]
gi|374742780|gb|EHR79162.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis
DSM 5473]
Length = 187
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 32/47 (68%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
G+ + + D+ +I + VII GDGA++ + F +V++P + E++ G++
Sbjct: 43 GVILAILDVHEISEGVIIHGDGATYHEAVFDVLVWKPEMHEVVEGEV 89
>gi|226816|prf||1607331A Zn finger protein
Length = 932
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 633 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 684
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 685 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 714
>gi|403221938|dbj|BAM40070.1| uncharacterized protein TOT_020001049 [Theileria orientalis
strain Shintoku]
Length = 136
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 22 TKVFPNVGLCMML-YDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIR 76
KV VGL + L D K E S I+P DG++H K+ F+ +VF P ++E+ R
Sbjct: 36 NKVVHGVGLAIALDGDFLKCE-SRILPNDGSAHYKLIFKLLVFSPVINEVFKANYR 90
>gi|346223467|gb|AEO20324.1| RE18096p1 [Drosophila melanogaster]
Length = 1051
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 951 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 1002
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 1003 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 1032
>gi|345566807|gb|EGX49749.1| hypothetical protein AOL_s00078g238 [Arthrobotrys oligospora ATCC
24927]
Length = 169
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+C++ D I I+PG G + + +R VV+RPF E + G + + SK G
Sbjct: 45 ICVL--DAYNISMGKILPGSGLAEFTISYRAVVWRPFKGETVDGVVTAVSKLG 95
>gi|45549221|ref|NP_524342.3| suppressor of variegation 3-7, isoform A [Drosophila melanogaster]
gi|50403724|sp|P20193.4|SUV37_DROME RecName: Full=Protein suppressor of variegation 3-7
gi|45446473|gb|AAF54918.2| suppressor of variegation 3-7, isoform A [Drosophila melanogaster]
Length = 1250
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 951 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 1002
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 1003 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 1032
>gi|288560738|ref|YP_003424224.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
gi|288543448|gb|ADC47332.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
Length = 189
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 8 IEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFV 67
+ED I + + + ++ N+GL + + I ++ + V+I GDGA++ V F + F+P
Sbjct: 19 LEDVAIETLNESYNGQLDKNLGLIVGVTSIEEMGEGVLIMGDGAAYHNVIFNAIFFKPEQ 78
Query: 68 SEIIIGKIRSCSKEG 82
E++ G++ ++ G
Sbjct: 79 QEVVEGEVIDIAEFG 93
>gi|281361703|ref|NP_001163601.1| suppressor of variegation 3-7, isoform B [Drosophila melanogaster]
gi|272476963|gb|ACZ94898.1| suppressor of variegation 3-7, isoform B [Drosophila melanogaster]
gi|384229095|gb|AFH68358.1| FI20162p1 [Drosophila melanogaster]
Length = 1248
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 949 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 1000
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 1001 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 1030
>gi|119719332|ref|YP_919827.1| DNA-directed RNA polymerase subunit E' [Thermofilum pendens Hrk 5]
gi|119524452|gb|ABL77824.1| DNA-directed RNA polymerase, subunit E' [Thermofilum pendens Hrk 5]
Length = 222
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
+V VGL + + D E+ + GDGAS+ + F +VF P +E++ G++
Sbjct: 64 RVVQGVGLVISILDAEVSEEGFLTWGDGASYHEARFTALVFSPVNNEVVEGEV 116
>gi|403414624|emb|CCM01324.1| predicted protein [Fibroporia radiculosa]
Length = 199
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 42 DSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84
D + G + V FR VFRPF SE+I+ K++S ++G+
Sbjct: 35 DCRNVKGHNNLNAAVIFRLTVFRPFPSEVILAKVKSSDEDGIR 77
>gi|406604823|emb|CCH43698.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 150
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 29 GLCMMLYDITKIE--DSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G M + D I+ IIP DG++ +V++R VV++PF E++ G SK G
Sbjct: 22 GYIMCVLDCMSIDIGKGKIIPSDGSAEFEVKYRAVVWKPFKGEVVDGVCSQVSKLG 77
>gi|150400166|ref|YP_001323933.1| DNA-directed RNA polymerase subunit E' [Methanococcus vannielii
SB]
gi|150012869|gb|ABR55321.1| DNA-directed RNA polymerase [Methanococcus vannielii SB]
Length = 188
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
+VG + + DI ++ D II GDGA++ + +F + + P + E++ G+I
Sbjct: 41 DVGYVLSIVDINQVSDGSIIYGDGAAYHETKFDVLTYVPELHEVVEGEI 89
>gi|61675657|gb|AAX51644.1| RE27718p [Drosophila melanogaster]
Length = 715
Score = 36.6 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 416 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 467
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 468 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 497
>gi|157114451|ref|XP_001652277.1| hypothetical protein AaeL_AAEL006871 [Aedes aegypti]
gi|108877267|gb|EAT41492.1| AAEL006871-PA [Aedes aegypti]
Length = 293
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 104 ILKYFAEKDKPDPVRDFLMGAIAPALRSLPRHLFLKAKKEIFEAVHKYEM 153
+ K + DPV FL G IAP L+SL + A+ EIF V KYE+
Sbjct: 227 VRKMLTTAENRDPVDAFLAG-IAPTLKSLHPYYQNLARSEIFATVQKYEL 275
>gi|315231773|ref|YP_004072209.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus
MP]
gi|315184801|gb|ADT84986.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus
MP]
Length = 186
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRP 65
G+ + + D+ ++ + VI+PGDGA++ +V F +V++P
Sbjct: 43 GVILAVLDVHEVSEGVIVPGDGATYHEVVFDVLVWKP 79
>gi|303279531|ref|XP_003059058.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458894|gb|EEH56190.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 711
Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GL + LYD+ +E + PG+G++H KV FR VVFRPFV E++ ++ +EG
Sbjct: 38 KVIRDLGLVITLYDVVSVEGGTVYPGEGSAHFKVVFRVVVFRPFVGEVLEATLKRSDEEG 97
Query: 83 VHDS 86
+ S
Sbjct: 98 LRVS 101
>gi|308808622|ref|XP_003081621.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
gi|116060086|emb|CAL56145.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
Length = 1353
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 7 KIEDSVIIPGDGASHTKV----FPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY-- 60
++E S + P D ++T+V G +M+ + + + V++ DG + K +Y
Sbjct: 1192 EVESSRLTPTDAFTNTQVEGTCSGRYGFIVMVTRVDDVSEGVVV-DDGTARAKFHVKYDC 1250
Query: 61 VVFRPFVSEIIIGKIRSCSKEG 82
VVFRPF E++ + +K G
Sbjct: 1251 VVFRPFKGEVVDAVVTQVNKFG 1272
>gi|297618529|ref|YP_003706634.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
gi|297377506|gb|ADI35661.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
Length = 189
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 27/95 (28%)
Query: 2 LYDITKIEDSVIIPGDGASHTKVFPN---------------------VGLCMMLYDITKI 40
+Y I IED++ IP K+F N +G + + DI +I
Sbjct: 1 MYKILTIEDTIRIP------PKMFGNPLKDNVQKVLMEKYEGILDKDLGFILAIEDIDQI 54
Query: 41 EDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
+ II GDGA++ F + + P V E+I G+I
Sbjct: 55 SEGDIIYGDGAAYHDTTFNILTYEPEVHEMIEGEI 89
>gi|296805993|ref|XP_002843816.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
gi|238845118|gb|EEQ34780.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
Length = 169
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
+C+M D+ I + IIPG G + + +R +V++PF E + + S +G+
Sbjct: 45 VCVM--DMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKNQGI 96
>gi|91082423|ref|XP_970313.1| PREDICTED: similar to GA16051-PA [Tribolium castaneum]
gi|270007516|gb|EFA03964.1| hypothetical protein TcasGA2_TC014109 [Tribolium castaneum]
Length = 173
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I +I+PG G V+++ +VFRPF E++ +R +K G+
Sbjct: 43 GFVIAVTTIDSIGAGLILPGQGYVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGM 97
>gi|118576156|ref|YP_875899.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
gi|118194677|gb|ABK77595.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
Length = 244
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
++G +M+ D E +I GDG + KVEF + F P + EII G+I
Sbjct: 69 DLGYIIMILDAKVEEMGKMIAGDGGTFHKVEFNALTFYPKLQEIIQGEI 117
>gi|452987401|gb|EME87156.1| hypothetical protein MYCFIDRAFT_89029 [Pseudocercospora fijiensis
CIRAD86]
Length = 170
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSS 89
+ + + + I + V++PG G + + +R +++RPF E++ G + + G +
Sbjct: 43 IVIQIIGVDDISEPVLVPGTGMAKYVLSYRAIIWRPFRGEVVDGLVTTVVSNGFFVEVGA 102
Query: 90 NQPEQPISDSTVKDILKYFAEKDKP 114
+S S + LKY E P
Sbjct: 103 MTVF--VSRSMIPSNLKYTVEGSTP 125
>gi|375013736|ref|YP_004990724.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Owenweeksia hongkongensis DSM 17368]
gi|359349660|gb|AEV34079.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Owenweeksia hongkongensis DSM 17368]
Length = 256
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 93 EQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALRSLPRH----LFLKAKKEIFEAV 148
E PI T K +L Y E + + A+APA SL RH L+LK + + F A
Sbjct: 39 EDPIDGRTYKKLLPYGYEGRQRE-------NALAPATLSLERHRLMWLYLKEETDFFTAP 91
Query: 149 HKYEMIAEEQS 159
HK +A EQ
Sbjct: 92 HKVLHVAPEQC 102
>gi|304314475|ref|YP_003849622.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
marburgensis str. Marburg]
gi|302587934|gb|ADL58309.1| predicted DNA-directed RNA polymerase subunit E'
[Methanothermobacter marburgensis str. Marburg]
Length = 184
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 2 LYDITKIEDSVIIPGDGASH---------------TKVFPNVGLCMMLYDITKIEDSVII 46
+Y ITKI D+V IP D ++ N+G + + +I I +I
Sbjct: 1 MYYITKIVDTVRIPPDRFEEPLEEVAIEVLNETYVGRMDRNLGQMITVKEIEDIGIGKVI 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
GDGA++ +V F + F+P + EI+ G++ ++ G
Sbjct: 61 MGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFG 96
>gi|15678292|ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 184
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 2 LYDITKIEDSVIIPGDGASH---------------TKVFPNVGLCMMLYDITKIEDSVII 46
+Y +TKI D+V IP D ++ N+G + + +I I +I
Sbjct: 1 MYYVTKIVDTVRIPPDRFEEPLEEVAVEVLNETYVGRMDKNLGQLITVKEIEDIGIGKVI 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
GDGA++ +V F + F+P + EI+ G++ ++ G
Sbjct: 61 MGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFG 96
>gi|332374930|gb|AEE62606.1| unknown [Dendroctonus ponderosae]
Length = 173
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I +I+PG G V+++ +VFRPF E++ +R +K G+
Sbjct: 43 GFVIAVTTIDHIGAGLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGM 97
>gi|327305241|ref|XP_003237312.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
gi|326460310|gb|EGD85763.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
Length = 191
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
+C+M D+ I + IIPG G + + +R +V++PF E + + S +G+
Sbjct: 45 VCVM--DMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKNQGI 96
>gi|195170164|ref|XP_002025883.1| GL10159 [Drosophila persimilis]
gi|198461157|ref|XP_001361928.2| GA21787 [Drosophila pseudoobscura pseudoobscura]
gi|194110747|gb|EDW32790.1| GL10159 [Drosophila persimilis]
gi|198137255|gb|EAL26507.2| GA21787 [Drosophila pseudoobscura pseudoobscura]
Length = 304
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 26/114 (22%)
Query: 48 GDGASH-TKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILK 106
D A+H T+ + Y+V P S S+E H SQ S P + T +
Sbjct: 206 ADDAAHPTQGDINYMVCMP-----------SMSQERKHLSQESLAPTMAVPTMTETE--- 251
Query: 107 YFAEKDKPDPVRDFLMGAIAPALRSLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
D+ ++A LR L R +KAK E+F+ + KY M+ EE+ G
Sbjct: 252 -----------DDYFCKSVAAYLRQLSRVHKIKAKVEMFQILEKYIMLEEERRG 294
>gi|386874922|ref|ZP_10117141.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
gi|386807285|gb|EIJ66685.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
Length = 198
Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
++G +M+ D E +I GDG + KVEF + F P + EI+ G+I
Sbjct: 41 DLGYIIMILDAKVDEMGKMIAGDGGTFHKVEFEALTFYPKLQEIVQGEI 89
>gi|57641634|ref|YP_184112.1| DNA-directed RNA polymerase subunit E' [Thermococcus kodakarensis
KOD1]
gi|57159958|dbj|BAD85888.1| DNA-directed RNA polymerase, subunit E' [Thermococcus
kodakarensis KOD1]
Length = 190
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRP 65
G+ + + D+ +I + VI+PGDGA++ + F +V+ P
Sbjct: 43 GVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEP 79
>gi|407465243|ref|YP_006776125.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
gi|407048431|gb|AFS83183.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
Length = 198
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
++G +M+ D E +I GDG + KVEF + F P + EI+ G+I
Sbjct: 41 DLGYIIMILDAKVDEMGKMIAGDGGTFHKVEFEALTFYPKLQEIVQGEI 89
>gi|406694604|gb|EKC97928.1| hypothetical protein A1Q2_07725 [Trichosporon asahii var. asahii
CBS 8904]
Length = 171
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
G + + ++T I + I+P G + K + +V +PF E++ GK+ + +K G
Sbjct: 43 GYIISVVNVTDIGEGKIMPSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKMG 96
>gi|198416215|ref|XP_002120066.1| PREDICTED: similar to LOC555713 protein [Ciona intestinalis]
Length = 858
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 79 SKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALRSLP 133
++E H + S N+ QPI+ + V + + + DKP PV D+ G I P+ R+ P
Sbjct: 631 NQENDH-ATSQNETSQPINPTPVHSLPQSIIDLDKPCPVVDYTQGYITPSQRTAP 684
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,678,802,077
Number of Sequences: 23463169
Number of extensions: 106775529
Number of successful extensions: 219393
Number of sequences better than 100.0: 497
Number of HSP's better than 100.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 218626
Number of HSP's gapped (non-prelim): 732
length of query: 169
length of database: 8,064,228,071
effective HSP length: 129
effective length of query: 40
effective length of database: 9,332,446,566
effective search space: 373297862640
effective search space used: 373297862640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)