BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11392
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus
GN=Polr3h PE=2 SV=2
Length = 204
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus
GN=POLR3H PE=2 SV=1
Length = 204
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens
GN=POLR3H PE=1 SV=1
Length = 204
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 58/80 (72%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FR VVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
SV=1
Length = 212
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 15/100 (15%)
Query: 2 LYDITKIEDSVIIPGD--------GASH-------TKVFPNVGLCMMLYDITKIEDSVII 46
++ ++KI D V IP D +H K+ PNVGLC+ +YD+ +E+ +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 47 PGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDS 86
PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG+ S
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc25 PE=1 SV=1
Length = 203
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
KV N+GL + +YD KI + +I GDG+S+ V FR ++FRPF E+++GKI+SCS+E
Sbjct: 36 NKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEE 95
Query: 82 GVH 84
G+
Sbjct: 96 GIR 98
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 22 TKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKE 81
+KV N GL + LYDI DS + GDG +H V FR VVF+PF E++ G I+ S++
Sbjct: 35 SKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQ 94
Query: 82 GVH 84
+
Sbjct: 95 SIQ 97
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
>sp|P39466|RPOE_SULAC DNA-directed RNA polymerase subunit E OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoE PE=1 SV=2
Length = 183
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+ ++G+ + + + E+ II GDGA++ +VEF +V+ P + E+I G++ G
Sbjct: 37 KLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYG 96
Query: 83 VH 84
V+
Sbjct: 97 VY 98
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb7 PE=1 SV=1
Length = 172
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
+C++ + I+ ++PG G + +V++R V++RPF E++ + + +K G
Sbjct: 47 ICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMG 99
>sp|P20193|SUV37_DROME Protein suppressor of variegation 3-7 OS=Drosophila melanogaster
GN=Su(var)3-7 PE=1 SV=4
Length = 1250
Score = 36.6 bits (83), Expect = 0.073, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 71 IIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALR 130
I+ ++R+ +E V ++S Q ++ S +K +P V D +I+P ++
Sbjct: 951 IVTRLRTLERESVAHNESMAQAPPSVTVSPIK--------PPEPRHVMDLFFDSISPTMK 1002
Query: 131 SLPRHLFLKAKKEIFEAVHKYEMIAEEQSG 160
SLP L + K +I + V E+ A +++
Sbjct: 1003 SLPPDLAAEGKSKIMQLVCSLELRAMQRNA 1032
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I VI PG G V+++ +VFRPF E++ + +K G+
Sbjct: 43 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGL 97
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I VI PG G V+++ +VFRPF E++ + +K G+
Sbjct: 43 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGL 97
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I VI PG G V+++ +VFRPF E++ + +K G+
Sbjct: 43 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGL 97
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I VI PG G V+++ +VFRPF E++ + +K G+
Sbjct: 43 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGL 97
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus
GN=POLR2G PE=2 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGV 83
G + + I I VI PG G V+++ +VFRPF E++ + +K G+
Sbjct: 43 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGL 97
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 27 NVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKI 75
+VG + + D+ I + ++ GDG+++ V F +V+ P + E+I G++
Sbjct: 41 DVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEV 89
>sp|A7ZC67|KHSE_CAMC1 Homoserine kinase OS=Campylobacter concisus (strain 13826)
GN=thrB PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 11 SVIIPGDGASHTKVFPNVGLCMMLYDITKIE----DSVIIPGDGASHTKVEFRYVVFRPF 66
+++IP A+ F +GL + L++ KIE SV I G+G+ T ++ R +F
Sbjct: 2 NILIPATSANLGPGFDALGLSLKLFNSVKIEPSKFSSVSINGEGSDSTNLK-RNNIFLSI 60
Query: 67 VSEIII 72
+EI +
Sbjct: 61 FNEIFL 66
>sp|Q7SDY6|SLU7_NEUCR Pre-mRNA-splicing factor slu-7 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=slu-7 PE=3 SV=1
Length = 416
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 49 DGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYF 108
DG K F+Y E +G+ R+ +K+ + I + T K +L
Sbjct: 184 DGPEDDKSGFKYD------EESDMGRDRATTKQSMR-----------IREDTAKYLLNLD 226
Query: 109 AEKDKPDPVRDFLM--GAIAPALRSL-PRHLFLKAKKEI--FEAVHKYEMIAEEQSGD 161
++ K +P + L+ GAIA +L FL+A E FE +Y A+E+SGD
Sbjct: 227 SDSAKYNPKKRALVDAGAIADKSAALFAEESFLRASGEAAEFEKAQRYAWEAQERSGD 284
>sp|Q9FAX2|GYRB_CHIJA DNA gyrase subunit B (Fragment) OS=Chitinophaga japonensis GN=gyrB
PE=3 SV=1
Length = 481
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 4 DITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
+I IE + G + T+VF G L++ +KIE + GD F
Sbjct: 177 NINTIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIE----VTGDD------------F 220
Query: 64 RPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMG 123
R +S I+ K+ EG ++ N + DS V D+L + E + P R +
Sbjct: 221 REGLSAIVSVKVPEPQFEGQTKTKLGNSDVMGVVDSAVADVLNAYLE-EHPKEARTVINK 279
Query: 124 AIAPA 128
+ A
Sbjct: 280 VVLAA 284
>sp|Q9YHB5|CND3_XENLA Condensin complex subunit 3 OS=Xenopus laevis GN=ncapg PE=1 SV=1
Length = 1034
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 87 QSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFLMGAIAPALRSLPRHLFLKAKKEIFE 146
Q + P+ P+S++ V + E D VR ++ IAP+ +SLP+ + ++ E
Sbjct: 171 QDPSDPDCPVSNAYV-----HLLENDSNPEVRRAVLTCIAPSAKSLPK--IVGRTMDVKE 223
Query: 147 AVHK--YEMIAEE 157
V K Y++++E+
Sbjct: 224 PVRKLAYQVLSEK 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,415,525
Number of Sequences: 539616
Number of extensions: 2599841
Number of successful extensions: 5529
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5507
Number of HSP's gapped (non-prelim): 38
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)