Query psy11392
Match_columns 169
No_of_seqs 147 out of 468
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 17:15:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ayh_B DNA-directed RNA polyme 99.9 1E-27 3.6E-32 195.7 12.8 98 5-102 19-116 (203)
2 4ayb_E DNA-directed RNA polyme 99.9 9.7E-28 3.3E-32 190.7 11.2 98 5-102 19-116 (180)
3 2ckz_B C25, DNA-directed RNA p 99.9 5.6E-27 1.9E-31 194.3 13.0 102 5-107 19-121 (218)
4 3h0g_G DNA-directed RNA polyme 99.9 3.1E-27 1.1E-31 188.1 9.2 96 5-100 20-117 (172)
5 1go3_E DNA-directed RNA polyme 99.9 4.7E-24 1.6E-28 170.0 11.1 98 5-102 19-116 (187)
6 2c35_B Human RPB7, DNA-directe 99.9 2E-23 7E-28 164.9 10.7 96 5-100 19-114 (172)
7 1y14_B B16, RPB7, DNA-directed 99.9 8.8E-23 3E-27 161.6 8.7 96 5-100 19-116 (171)
8 2b8k_G B16, DNA-directed RNA p 99.9 1.3E-22 4.3E-27 168.0 9.5 96 5-100 19-116 (215)
9 2rf4_A DNA-directed RNA polyme 99.7 1.1E-16 3.7E-21 131.9 8.6 107 6-113 56-185 (214)
10 2bh8_A 1B11; transcription, mo 98.8 8.5E-10 2.9E-14 81.0 1.2 72 29-102 19-97 (101)
11 1kl9_A Eukaryotic translation 98.7 4.2E-09 1.4E-13 85.0 2.6 38 65-102 13-53 (182)
12 1luz_A Protein K3, protein K2; 98.6 1.2E-08 4E-13 73.2 3.1 38 64-102 8-49 (88)
13 2a19_A EIF-2- alpha, eukaryoti 98.6 1.4E-08 4.7E-13 81.3 3.7 38 65-102 13-53 (175)
14 2cqo_A Nucleolar protein of 40 98.6 2.4E-09 8.2E-14 80.6 -0.9 46 57-102 12-59 (119)
15 2k52_A Uncharacterized protein 98.6 1.3E-08 4.6E-13 70.8 2.8 40 64-103 2-42 (80)
16 2eqs_A ATP-dependent RNA helic 98.6 3.6E-08 1.2E-12 71.9 3.6 40 63-102 8-51 (103)
17 2khi_A 30S ribosomal protein S 98.5 9.6E-08 3.3E-12 70.8 3.6 44 59-102 22-66 (115)
18 2khj_A 30S ribosomal protein S 98.5 1.7E-07 5.8E-12 68.7 4.9 39 64-102 28-67 (109)
19 2k4k_A GSP13, general stress p 98.4 7.6E-08 2.6E-12 73.1 2.9 39 64-102 4-43 (130)
20 1q8k_A Eukaryotic translation 98.4 2.2E-07 7.6E-12 80.4 3.9 39 64-102 10-51 (308)
21 3aev_A Translation initiation 98.3 3E-07 1E-11 78.3 3.5 39 64-102 8-49 (275)
22 3cw2_C Translation initiation 98.2 3.7E-07 1.3E-11 77.2 2.4 39 64-102 8-49 (266)
23 3cdi_A Polynucleotide phosphor 98.2 2.5E-07 8.6E-12 87.9 0.0 62 41-102 599-663 (723)
24 4aid_A Polyribonucleotide nucl 98.1 1.2E-07 4E-12 90.3 -3.5 64 39-102 607-673 (726)
25 1e3p_A Guanosine pentaphosphat 98.0 3.6E-07 1.2E-11 87.3 -1.5 45 58-102 656-707 (757)
26 2nn6_I 3'-5' exoribonuclease C 98.0 2.9E-06 1E-10 69.4 3.7 40 63-102 77-125 (209)
27 3m7n_A Putative uncharacterize 97.9 3E-06 1E-10 67.5 2.2 39 63-102 54-103 (179)
28 3go5_A Multidomain protein wit 97.9 7.1E-06 2.4E-10 70.0 4.1 80 18-102 8-107 (285)
29 2ba0_A Archeal exosome RNA bin 97.8 7.8E-06 2.7E-10 67.6 3.4 39 63-101 53-92 (229)
30 2je6_I RRP4, exosome complex R 97.7 7.7E-06 2.6E-10 68.6 1.7 39 63-101 70-109 (251)
31 2z0s_A Probable exosome comple 97.7 1.4E-05 4.8E-10 66.1 2.2 39 63-101 62-101 (235)
32 3bzc_A TEX; helix-turn-helix, 97.7 1.1E-05 3.9E-10 77.3 1.7 38 65-102 652-690 (785)
33 3psi_A Transcription elongatio 97.6 3.7E-05 1.3E-09 76.8 4.0 39 65-103 900-939 (1219)
34 1wi5_A RRP5 protein homolog; S 97.5 3.1E-05 1.1E-09 57.3 1.7 35 65-99 19-54 (119)
35 3psf_A Transcription elongatio 97.3 3E-05 1E-09 76.3 0.0 40 64-103 902-942 (1030)
36 3go5_A Multidomain protein wit 97.3 0.0001 3.6E-09 62.8 3.2 54 64-117 3-58 (285)
37 2ja9_A Exosome complex exonucl 97.1 0.00031 1.1E-08 56.2 4.0 38 63-100 3-42 (175)
38 2nn6_H Exosome complex exonucl 97.1 0.00014 4.7E-09 63.0 1.9 42 63-104 91-133 (308)
39 2id0_A Exoribonuclease 2; RNAs 96.6 0.00074 2.5E-08 63.0 2.6 46 63-108 554-604 (644)
40 2bx2_L Ribonuclease E, RNAse E 96.6 0.0013 4.3E-08 60.6 4.0 39 64-102 42-83 (517)
41 1hh2_P NUSA, N utilization sub 96.6 0.00072 2.4E-08 59.4 2.2 44 67-110 134-183 (344)
42 2wp8_J Exosome complex exonucl 95.4 0.0085 2.9E-07 58.7 3.4 45 64-109 884-931 (977)
43 1k0r_A NUSA; two component arr 95.1 0.0069 2.4E-07 53.7 1.6 49 63-111 126-188 (366)
44 2vnu_D Exosome complex exonucl 93.2 0.027 9.3E-07 53.5 1.6 42 66-108 669-713 (760)
45 2asb_A Transcription elongatio 93.1 0.03 1E-06 47.4 1.5 50 62-111 2-65 (251)
46 2bh8_A 1B11; transcription, mo 89.3 0.2 6.9E-06 36.0 2.5 37 67-104 13-54 (101)
47 1kl9_A Eukaryotic translation 87.6 0.0021 7.3E-08 51.5 -9.9 84 17-102 16-138 (182)
48 2nn6_G Exosome complex exonucl 83.4 1.2 4E-05 38.1 4.4 38 63-100 123-161 (289)
49 3d0f_A Penicillin-binding 1 tr 40.5 23 0.0008 24.8 3.2 38 65-102 31-69 (106)
50 1e3p_A Guanosine pentaphosphat 39.1 5.1 0.00017 38.4 -0.7 30 73-103 617-648 (757)
51 3he4_B Synzip5; heterodimeric 23.9 35 0.0012 21.4 1.5 25 128-152 21-46 (46)
52 3u28_C H/ACA ribonucleoprotein 21.4 76 0.0026 23.7 3.2 59 58-121 53-113 (114)
No 1
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1e-27 Score=195.67 Aligned_cols=98 Identities=33% Similarity=0.520 Sum_probs=94.1
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeeeeeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecceeE
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~GiF 84 (169)
+.++.+++.++|+++|+||+++++|+||||+|+.++++|+|.||||+++++|+|++++|+|++||+++|+|+++|++|+|
T Consensus 19 ~~~~~~~i~~~L~~~~egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~f~p~~GEv~~G~Vs~vt~~Gif 98 (203)
T 3ayh_B 19 WKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIR 98 (203)
T ss_dssp TSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred CChHHHHHHHHhhhhhCCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEEEccCCCCEEEEEEEEEeccEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCccccc
Q psy11392 85 DSQSSNQPEQPISDSTVK 102 (169)
Q Consensus 85 V~lGp~dGlIhISd~s~~ 102 (169)
|++||++|++|+|++..+
T Consensus 99 V~lg~~eglv~~~~l~~d 116 (203)
T 3ayh_B 99 VTISFFDDIFIPKDMLFD 116 (203)
T ss_dssp EECSSCCCEEEEGGGBCT
T ss_pred EEEeCceEEEEcHHhCCC
Confidence 999999999999977654
No 2
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.95 E-value=9.7e-28 Score=190.67 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=95.0
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeeeeeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecceeE
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~GiF 84 (169)
+.++++++.++|+++|+||+++++|+||+++||.++++|+|.++||+++++++|++++|+|++||+++|+|++++++|+|
T Consensus 19 ~~~~~~~i~~~L~~k~~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv~~p~~Gev~~G~V~~v~~~G~f 98 (180)
T 4ayb_E 19 GKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVF 98 (180)
T ss_dssp TSCHHHHHHHHHHHHTTTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred CccHHHHHHHHHHHHhcCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheeeeeccCCCEEEEEEeeeccceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCccccc
Q psy11392 85 DSQSSNQPEQPISDSTVK 102 (169)
Q Consensus 85 V~lGp~dGlIhISd~s~~ 102 (169)
|++||++|++|+|++.++
T Consensus 99 v~l~~~~glvh~s~l~~d 116 (180)
T 4ayb_E 99 VNLGPMDGLVHISQITDD 116 (180)
T ss_dssp EECSSSEEEEEGGGSCSS
T ss_pred EEECCccceEEeeecCCC
Confidence 999999999999988876
No 3
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.6e-27 Score=194.27 Aligned_cols=102 Identities=31% Similarity=0.528 Sum_probs=95.3
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeeeeeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecceeE
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~GiF 84 (169)
+.++++++.++|+++|+||+++++|+||||+||.++++|+|.||||+++++|+|++++|+|++||+++|+|+++|++|+|
T Consensus 19 ~~~l~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~vGEv~~G~Is~Vt~fGif 98 (218)
T 2ckz_B 19 HRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIK 98 (218)
T ss_dssp TSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred CchHHHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCCCCCEEEEEEEEEccCcEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe-CCCCCCccCCccccccccce
Q psy11392 85 DSQ-SSNQPEQPISDSTVKDILKY 107 (169)
Q Consensus 85 V~l-Gp~dGlIhISd~s~~e~i~~ 107 (169)
|++ ||++|++|+|++. ++|..|
T Consensus 99 VeL~g~~eglv~~s~l~-~d~~~f 121 (218)
T 2ckz_B 99 VSLLGIFDDIFIPQNML-FEGCYY 121 (218)
T ss_dssp EECTTSCCCEEEETTTS-CTTCEE
T ss_pred EEccCccceEEEcHHHC-CCCcEE
Confidence 999 9999999999653 444433
No 4
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.1e-27 Score=188.10 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=93.0
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEe--eeeeeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecce
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLY--DITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~--dI~~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~G 82 (169)
+.++++++.++|+++|+||++++.|+||+|+ ||.++++|+|.||||+++++|+|++++|+|++||+++|+|++++++|
T Consensus 20 ~~~~~~~i~~~l~~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~~ivf~p~~Gev~~G~V~~v~~fG 99 (172)
T 3h0g_G 20 GPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMG 99 (172)
T ss_dssp TTTHHHHHHHHHHHHHTTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEEEEEECCCTTCEEECCCCEEETTE
T ss_pred CccHHHHHHHHHHHHhCCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEEEeeeccCCCCEEEEEEEEEEcce
Confidence 4568999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCccCCccc
Q psy11392 83 VHDSQSSNQPEQPISDST 100 (169)
Q Consensus 83 iFV~lGp~dGlIhISd~s 100 (169)
+||++||++|++|+|+++
T Consensus 100 ~FV~l~~~~glVh~s~l~ 117 (172)
T 3h0g_G 100 FFANIGPLNVFVSSHLVP 117 (172)
T ss_dssp EECCBTTBCCEEEGGGSC
T ss_pred EEEEeCCeEEEEEHHHCC
Confidence 999999999999999885
No 5
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.91 E-value=4.7e-24 Score=170.03 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=93.4
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeeeeeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecceeE
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~GiF 84 (169)
+..+.+++.+.|+++|+||+.++.|+||+++||.++++|+|.++||.++++++|++++|+|++||+++|+|++++++|+|
T Consensus 19 ~~~i~~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~~~~~~Gev~~G~V~~v~~~G~f 98 (187)
T 1go3_E 19 GKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSF 98 (187)
T ss_dssp TSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred CccHHHHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEEEccCCCCEEEEEEEEEeCcEEE
Confidence 34567889988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCccccc
Q psy11392 85 DSQSSNQPEQPISDSTVK 102 (169)
Q Consensus 85 V~lGp~dGlIhISd~s~~ 102 (169)
|++||++|++|+|+++++
T Consensus 99 V~l~~~eglvhis~l~~~ 116 (187)
T 1go3_E 99 VRLGPLDGLIHVSQIMDD 116 (187)
T ss_dssp EECSSSEEEEEGGGSCSS
T ss_pred EEEcCccEEEEhHHhCCC
Confidence 999999999999999865
No 6
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.89 E-value=2e-23 Score=164.92 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=92.7
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeeeeeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecceeE
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVH 84 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~GiF 84 (169)
+..+.+++..+|+.+|+|+++++.|+||+++++.++++|.+.|+||..+++++|++++|+|++||+++|+|++++++|+|
T Consensus 19 ~~~~~~~i~~~l~~~~~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~f 98 (172)
T 2c35_B 19 GPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLF 98 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred CChHHHHHHHHHHHHHcCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEEeeCCCCCEEEEEEEEEeCCEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCccc
Q psy11392 85 DSQSSNQPEQPISDST 100 (169)
Q Consensus 85 V~lGp~dGlIhISd~s 100 (169)
|++||++|++|+|+++
T Consensus 99 V~l~~~~glvhis~l~ 114 (172)
T 2c35_B 99 TEIGPMSCFISRHSIP 114 (172)
T ss_dssp EEETTEEEEEEGGGSC
T ss_pred EEECCEEEEEEHHHCC
Confidence 9999999999999875
No 7
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.88 E-value=8.8e-23 Score=161.62 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=80.8
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeee--eeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecce
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDIT--KIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~--~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~G 82 (169)
+..+.+.+..+|+.+++|+|+.+.|+||+++||. ++++|+|.|+||.+++++.|++++|+|++||+++|+|++++++|
T Consensus 19 ~~~~p~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG 98 (171)
T 1y14_B 19 GPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98 (171)
T ss_dssp STTHHHHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEECCCTTCEEEEEEEEEETTE
T ss_pred CChHHHHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEccCCCCCEEEEEEEEEecCE
Confidence 4568899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCccCCccc
Q psy11392 83 VHDSQSSNQPEQPISDST 100 (169)
Q Consensus 83 iFV~lGp~dGlIhISd~s 100 (169)
+||++||.+|++|+|+++
T Consensus 99 ~FV~l~~~dglvhis~l~ 116 (171)
T 1y14_B 99 FEVQVGPMKVFVTKHLMP 116 (171)
T ss_dssp EEEEETTEEEEEEGGGSC
T ss_pred EEEEecCeEEEEEHHHCC
Confidence 999999999999999885
No 8
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.87 E-value=1.3e-22 Score=167.97 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=92.8
Q ss_pred ccchHHHHHHHhhhhcCceeeCCeeEEEEEeeee--eeccceEeeCCCceeEEEEEEEEEEecCCCcEEEEEEEEEecce
Q psy11392 5 ITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDIT--KIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82 (169)
Q Consensus 5 ~t~l~~~I~~eL~ekyegKVi~~vGLiV~V~dI~--~I~eG~I~pgDG~~~~~V~FraIvFrPf~GEVVeG~V~~vt~~G 82 (169)
+..+.+.+..+|+.+|+|+|+.+.|+||+++||. ++++|+|.||||.++++++|++++|+|++||+++|+|++++++|
T Consensus 19 ~~~~p~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~p~vGev~~G~V~~vt~fG 98 (215)
T 2b8k_G 19 GPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98 (215)
T ss_dssp SSSHHHHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEECCCTTEEEEEEEEEEETTE
T ss_pred ChhHhHHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheeccCCCCEEEEEEEEEecce
Confidence 4568899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCccCCccc
Q psy11392 83 VHDSQSSNQPEQPISDST 100 (169)
Q Consensus 83 iFV~lGp~dGlIhISd~s 100 (169)
+||++||.||+||+|+++
T Consensus 99 ~FVelg~~dGlVhiS~l~ 116 (215)
T 2b8k_G 99 FEVQVGPMKVFVTKHLMP 116 (215)
T ss_dssp EEEECTTSEEEEEGGGSC
T ss_pred EEEEecCcEEEEEHHHCC
Confidence 999999999999999886
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=131.88 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=80.1
Q ss_pred cchHHHHHHHhhhhcCceeeCCe-eEEEEEeeeeeecc------------ceEeeCCCceeEEEEEEEEEEecCCCcEEE
Q psy11392 6 TKIEDSVIIPGDGASHTKVFPNV-GLCMMLYDITKIED------------SVIIPGDGASHTKVEFRYVVFRPFVSEIII 72 (169)
Q Consensus 6 t~l~~~I~~eL~ekyegKVi~~v-GLiV~V~dI~~I~e------------G~I~pgDG~~~~~V~FraIvFrPf~GEVVe 72 (169)
..++.++.+.|+.. .+|+.+++ |+|++++++..+++ |+|.|++|+++++|+|++++||||+||+++
T Consensus 56 ~~~~~i~~~~L~~l-l~ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~g~~~~~V~~~~iVFrPf~GevL~ 134 (214)
T 2rf4_A 56 NPLQGVMKQHLNPL-VMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFTWCHVNLYVWQPQVGDVLE 134 (214)
T ss_dssp CHHHHHHHHHHHHH-BTSEETTTTEEEEEEEEEETTSCCC-----------------CCCEEEEEEEEEEECCCTTCEEE
T ss_pred ChhHHHHHHHHHHH-HhcccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCCceEEEEEEEEEEEEecCCCCEEE
Confidence 44555666677775 77888887 99999999976664 799999999999999999999999999999
Q ss_pred EEEEEEecceeEE-EeCCCCCCccCC----cccccc-----ccceecccCC
Q psy11392 73 GKIRSCSKEGVHD-SQSSNQPEQPIS----DSTVKD-----ILKYFAEKDK 113 (169)
Q Consensus 73 G~V~~vt~~GiFV-~lGp~dGlIhIS----d~s~~e-----~i~~~~~~d~ 113 (169)
|+|+++++.|+.+ .+|+|+-.|+.+ +..|+. ...||.++++
T Consensus 135 G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~ 185 (214)
T 2rf4_A 135 GYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNG 185 (214)
T ss_dssp EEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSC
T ss_pred EEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCC
Confidence 9999999988887 479999766543 345542 4578988654
No 10
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.80 E-value=8.5e-10 Score=81.00 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=60.6
Q ss_pred eEEEEEeeeeeeccceEeeCCCceeEEEEEEEEE---E---ecCCCcEEEEEEEEEecceeEEEe-CCCCCCccCCcccc
Q psy11392 29 GLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV---F---RPFVSEIIIGKIRSCSKEGVHDSQ-SSNQPEQPISDSTV 101 (169)
Q Consensus 29 GLiV~V~dI~~I~eG~I~pgDG~~~~~V~FraIv---F---rPf~GEVVeG~V~~vt~~GiFV~l-Gp~dGlIhISd~s~ 101 (169)
|.|..+.+ .-+-|+|.+.+|....-|.++++. | +|..|++++++|++++++|+||++ +.++|++|+|+++|
T Consensus 19 G~Vk~fn~--~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~ 96 (101)
T 2bh8_A 19 GIVKWFNA--DKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISW 96 (101)
T ss_dssp EEEEEEEG--GGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEE
T ss_pred eEEEEEEC--CCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCcc
Confidence 55444422 245678998888888889999988 3 789999999999999999999999 77999999999999
Q ss_pred c
Q psy11392 102 K 102 (169)
Q Consensus 102 ~ 102 (169)
+
T Consensus 97 ~ 97 (101)
T 2bh8_A 97 A 97 (101)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.71 E-value=4.2e-09 Score=84.99 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=33.9
Q ss_pred cCCCcEEEEEEEEEecceeEEEe---CCCCCCccCCccccc
Q psy11392 65 PFVSEIIIGKIRSCSKEGVHDSQ---SSNQPEQPISDSTVK 102 (169)
Q Consensus 65 Pf~GEVVeG~V~~vt~~GiFV~l---Gp~dGlIhISd~s~~ 102 (169)
|..|++++|+|++++++|+||++ ++++|++|+|+++|+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~ 53 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRR 53 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC---
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCc
Confidence 68999999999999999999999 789999999999996
No 12
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.65 E-value=1.2e-08 Score=73.18 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=35.6
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeC---CCCCCccCC-ccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQS---SNQPEQPIS-DSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lG---p~dGlIhIS-d~s~~ 102 (169)
.|..|++++|+|+ ++++|+||+++ ..+|++|+| +++|+
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~ 49 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMD 49 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHH
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcc
Confidence 4899999999999 99999999994 689999999 99986
No 13
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.64 E-value=1.4e-08 Score=81.33 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=31.5
Q ss_pred cCCCcEEEEEEEEEecceeEEEe---CCCCCCccCCccccc
Q psy11392 65 PFVSEIIIGKIRSCSKEGVHDSQ---SSNQPEQPISDSTVK 102 (169)
Q Consensus 65 Pf~GEVVeG~V~~vt~~GiFV~l---Gp~dGlIhISd~s~~ 102 (169)
|..|+++.|+|++++++|+||++ ++++|++|+|+++|+
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~ 53 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRR 53 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC-----
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCc
Confidence 56899999999999999999999 789999999999996
No 14
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=2.4e-09 Score=80.56 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=41.4
Q ss_pred EEEEEEEecCCCcEEEEEEEEEecceeEEEeCCC--CCCccCCccccc
Q psy11392 57 EFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSN--QPEQPISDSTVK 102 (169)
Q Consensus 57 ~FraIvFrPf~GEVVeG~V~~vt~~GiFV~lGp~--dGlIhISd~s~~ 102 (169)
+++.+...|..|++++|+|++++++|+||+++++ +|++|+|+++|+
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~ 59 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSC 59 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSS
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcc
Confidence 4556678899999999999999999999999764 999999999986
No 15
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.62 E-value=1.3e-08 Score=70.83 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=37.1
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVKD 103 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~e 103 (169)
.|..|++++|+|++++++|+||+++ +.+|++|+|+++|+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~ 42 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLR 42 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCccc
Confidence 4788999999999999999999998 799999999999853
No 16
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=3.6e-08 Score=71.93 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=36.5
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC----CCCCCccCCccccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS----SNQPEQPISDSTVK 102 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG----p~dGlIhISd~s~~ 102 (169)
..|..|++++|+|++++++|+||+++ +.+|++|+|+++++
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~ 51 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRRE 51 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCC
Confidence 46789999999999999999999998 68999999999554
No 17
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.45 E-value=9.6e-08 Score=70.81 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=39.0
Q ss_pred EEEEEecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccccc
Q psy11392 59 RYVVFRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVK 102 (169)
Q Consensus 59 raIvFrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~ 102 (169)
..+..+|..|++++|+|++++++|+||+++ +.+|++|+|+++|+
T Consensus 22 ~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~ 66 (115)
T 2khi_A 22 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWT 66 (115)
T ss_dssp CCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCS
T ss_pred HHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCcc
Confidence 334467899999999999999999999997 59999999999985
No 18
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.45 E-value=1.7e-07 Score=68.66 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=36.2
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~ 102 (169)
.+.+|+++.|+|++++++|+||+++ .++|++|+|+++|+
T Consensus 28 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~ 67 (109)
T 2khj_A 28 LNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRD 67 (109)
T ss_dssp TCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSS
T ss_pred cCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcc
Confidence 4578999999999999999999998 69999999999885
No 19
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.44 E-value=7.6e-08 Score=73.08 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=36.3
Q ss_pred ecCCCcEEEEEEEEEecceeEEEe-CCCCCCccCCccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQ-SSNQPEQPISDSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~l-Gp~dGlIhISd~s~~ 102 (169)
.+..|+++.|+|++++++|+||++ ++.+|+||+|+++|+
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~ 43 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHG 43 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcc
Confidence 467899999999999999999999 689999999999985
No 20
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.35 E-value=2.2e-07 Score=80.43 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=36.1
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeC---CCCCCccCCccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQS---SNQPEQPISDSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lG---p~dGlIhISd~s~~ 102 (169)
.|..|+++.|+|++++++|+||+++ +.+|++|+|+++|+
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~ 51 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRR 51 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCS
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcc
Confidence 3568999999999999999999994 79999999999995
No 21
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.30 E-value=3e-07 Score=78.26 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=36.3
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeC---CCCCCccCCccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQS---SNQPEQPISDSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lG---p~dGlIhISd~s~~ 102 (169)
.|..|+++.|+|++++++|+||+++ +.+|++|+|+++|+
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~ 49 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVAST 49 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSS
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcc
Confidence 4678999999999999999999996 79999999999985
No 22
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.23 E-value=3.7e-07 Score=77.20 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=36.2
Q ss_pred ecCCCcEEEEEEEEEecceeEEEe---CCCCCCccCCccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQ---SSNQPEQPISDSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~l---Gp~dGlIhISd~s~~ 102 (169)
.|..|+++.|+|++++++|+||++ ++.+|++|+|+++|+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~ 49 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSK 49 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCS
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcc
Confidence 478999999999999999999999 578999999999985
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.16 E-value=2.5e-07 Score=87.89 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccceEeeCCCceeEEE--EEEEEEEecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccccc
Q psy11392 41 EDSVIIPGDGASHTKV--EFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVK 102 (169)
Q Consensus 41 ~eG~I~pgDG~~~~~V--~FraIvFrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~ 102 (169)
+.-.|...|....... .++.+...|..|++++|+|+++++||+||+++ ..+|++|+|+++|+
T Consensus 599 g~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~ 663 (723)
T 3cdi_A 599 GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 663 (723)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCc
Confidence 3334433444443322 45667889999999999999999999999996 59999999999996
No 24
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.10 E-value=1.2e-07 Score=90.33 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=5.8
Q ss_pred eeccceEeeCCCceeEE--EEEEEEEEecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccccc
Q psy11392 39 KIEDSVIIPGDGASHTK--VEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVK 102 (169)
Q Consensus 39 ~I~eG~I~pgDG~~~~~--V~FraIvFrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~ 102 (169)
+-+.-+|...|+.+... -.++.++..|..|++++|+|+++++||+||++. +.+|++|+|+++|+
T Consensus 607 ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~ 673 (726)
T 4aid_A 607 DDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNE 673 (726)
T ss_dssp -------CCSCHHHHHHHHHC----------------------------------------------
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcc
Confidence 33444555555554433 457778889999999999999999999999995 59999999999996
No 25
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.04 E-value=3.6e-07 Score=87.26 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=19.4
Q ss_pred EEEEE--EecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcc----ccc
Q psy11392 58 FRYVV--FRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDS----TVK 102 (169)
Q Consensus 58 FraIv--FrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~----s~~ 102 (169)
.+.+. ..|..|++++|+|+++++||+||++. ..+||+|+|++ +|+
T Consensus 656 i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~ 707 (757)
T 1e3p_A 656 INGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGK 707 (757)
T ss_dssp -----------------CBEEECC-CSCEECCC---CCCCC-----------
T ss_pred HHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCC
Confidence 45666 78899999999999999999999994 59999999999 886
No 26
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.02 E-value=2.9e-06 Score=69.39 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=37.3
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC---------CCCCCccCCccccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS---------SNQPEQPISDSTVK 102 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG---------p~dGlIhISd~s~~ 102 (169)
+.|.+|++|.|+|++++++|+||+++ +++|+||+||++|.
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~ 125 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRAT 125 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTC
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccc
Confidence 57999999999999999999999996 78999999999985
No 27
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=97.93 E-value=3e-06 Score=67.52 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=36.1
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC-----------CCCCCccCCccccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS-----------SNQPEQPISDSTVK 102 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG-----------p~dGlIhISd~s~~ 102 (169)
+.|. |+++.|+|++++++|+||+++ +++|+||+||++|.
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~ 103 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEG 103 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSS
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcc
Confidence 5678 999999999999999999997 57999999999986
No 28
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.90 E-value=7.1e-06 Score=70.00 Aligned_cols=80 Identities=8% Similarity=-0.106 Sum_probs=54.3
Q ss_pred hhcCceeeC--CeeEEEEEeeee---eeccceEeeCCCceeEEEEEEEEE----------Eec--CCCcEEEEEEEEEe-
Q psy11392 18 GASHTKVFP--NVGLCMMLYDIT---KIEDSVIIPGDGASHTKVEFRYVV----------FRP--FVSEIIIGKIRSCS- 79 (169)
Q Consensus 18 ekyegKVi~--~vGLiV~V~dI~---~I~eG~I~pgDG~~~~~V~FraIv----------FrP--f~GEVVeG~V~~vt- 79 (169)
+..+++|.. +.|+.|.+-++. ..++ + |. .+..+|++.++. -+| ..|+++.|+|++++
T Consensus 8 ~~v~g~V~~~~~~G~fv~~~g~egllp~se--~-~~--~vGdevev~v~~d~~~r~iat~~~p~~~~G~~~~g~V~~v~~ 82 (285)
T 3go5_A 8 SFIVGLIIDENDRFYFVQKDGQTYALAKEE--G-QH--TVGDTVKGFAYTDMKQKLRLTTLEVTATQDQFGWGRVTEVRK 82 (285)
T ss_dssp EEEEEEEEEECSSEEEEEETTEEEEEEGGG--C-CC--CTTSEEEEEEEECTTSCEEEECSCCCSCSSSCEEEEEEEEET
T ss_pred CEEEEEEEEEECCEEEEEcCCeEEEEEHHH--C-cc--ccCCEEEEEEEECCCCCEEEecccccccCCCEEEEEEEEEcc
Confidence 344666654 448888763221 2221 1 11 455566655531 122 67999999999999
Q ss_pred cceeEEEeCC--CCCCccCCccccc
Q psy11392 80 KEGVHDSQSS--NQPEQPISDSTVK 102 (169)
Q Consensus 80 ~~GiFV~lGp--~dGlIhISd~s~~ 102 (169)
++|+||++|. .|+++|+||++|.
T Consensus 83 ~~GaFVdiG~~~~d~lvp~sel~~~ 107 (285)
T 3go5_A 83 DLGVFVDTGLPDKEIVVSLDILPEL 107 (285)
T ss_dssp TTEEEEECSCTTCCEEEEGGGSCSS
T ss_pred CceEEEEECCCCcEEEEEHHHCCcc
Confidence 7999999995 8999999999994
No 29
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.85 E-value=7.8e-06 Score=67.60 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=37.0
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTV 101 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~ 101 (169)
|.|.+|++|.|+|++++++|+||++| +++|+||+|+.+.
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~ 92 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPE 92 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTT
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccc
Confidence 67999999999999999999999999 7999999998884
No 30
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=97.74 E-value=7.7e-06 Score=68.64 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=36.7
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTV 101 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~ 101 (169)
|.|.+|++|.|+|++++++|+||++| +++|+||+|+.++
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~ 109 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLG 109 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHT
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcC
Confidence 67899999999999999999999999 7999999998875
No 31
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=97.67 E-value=1.4e-05 Score=66.07 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=36.7
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTV 101 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~ 101 (169)
|.|..|++|.|+|++++++|+||++| +++|+||+|+.+.
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~ 101 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLG 101 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHT
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCC
Confidence 68999999999999999999999999 7999999998864
No 32
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.66 E-value=1.1e-05 Score=77.28 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=35.0
Q ss_pred cCCCcEEEEEEEEEecceeEEEeCC-CCCCccCCccccc
Q psy11392 65 PFVSEIIIGKIRSCSKEGVHDSQSS-NQPEQPISDSTVK 102 (169)
Q Consensus 65 Pf~GEVVeG~V~~vt~~GiFV~lGp-~dGlIhISd~s~~ 102 (169)
...|++++|+|+++++||+||++|. .+|+||+|+++|+
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~ 690 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEK 690 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSS
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCcc
Confidence 4689999999999999999999984 7999999999983
No 33
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.57 E-value=3.7e-05 Score=76.83 Aligned_cols=39 Identities=8% Similarity=-0.025 Sum_probs=36.0
Q ss_pred cCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcccccc
Q psy11392 65 PFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVKD 103 (169)
Q Consensus 65 Pf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~e 103 (169)
..+|++++|+|+++++||+||+++ +++|+||+|+++|+-
T Consensus 900 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~ 939 (1219)
T 3psi_A 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQ 939 (1219)
T ss_dssp SCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTT
T ss_pred CCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCc
Confidence 368999999999999999999997 689999999999974
No 34
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.49 E-value=3.1e-05 Score=57.29 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=29.2
Q ss_pred cCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcc
Q psy11392 65 PFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDS 99 (169)
Q Consensus 65 Pf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~ 99 (169)
+.+|++++|+|++++++|+||++| +-.+.+|+++.
T Consensus 19 l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~ 54 (119)
T 1wi5_A 19 LKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLK 54 (119)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHH
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEec
Confidence 578999999999999999999999 44556676644
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.34 E-value=3e-05 Score=76.34 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCcccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVKD 103 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~e 103 (169)
...+|+++.|+|+++++||+||+++ +++|+||+|+++|+-
T Consensus 902 ~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~ 942 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQ 942 (1030)
T ss_dssp -----------------------------------------
T ss_pred HhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCc
Confidence 3468999999999999999999987 689999999999864
No 36
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.33 E-value=0.0001 Score=62.76 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=45.6
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeCCCCCCccCCccc--cccccceecccCCCcch
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDST--VKDILKYFAEKDKPDPV 117 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lGp~dGlIhISd~s--~~e~i~~~~~~d~~~~~ 117 (169)
+...|++++|+|++++++|+||++|..+|++|.|++. -+|-++.|+-.|..-|+
T Consensus 3 ~~~~G~~v~g~V~~~~~~G~fv~~~g~egllp~se~~~~vGdevev~v~~d~~~r~ 58 (285)
T 3go5_A 3 NTNLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQHTVGDTVKGFAYTDMKQKL 58 (285)
T ss_dssp CTTTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGCCCCTTSEEEEEEEECTTSCE
T ss_pred cccCCCEEEEEEEEEECCEEEEEcCCeEEEEEHHHCccccCCEEEEEEEECCCCCE
Confidence 3467999999999999999999999999999999884 45888888877765544
No 37
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.14 E-value=0.00031 Score=56.17 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=35.3
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeCC--CCCCccCCccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQSS--NQPEQPISDST 100 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lGp--~dGlIhISd~s 100 (169)
|.|..|++|.|+|++++.++++|++|+ .++++|+|+..
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~ 42 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP 42 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC
Confidence 689999999999999999999999999 89999998544
No 38
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.13 E-value=0.00014 Score=63.00 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=36.2
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccccccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVKDI 104 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~e~ 104 (169)
|.|.+|++|.|+|++++++|+||++| +.++++|+|++++..+
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg 133 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 133 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC----
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccc
Confidence 68999999999999999999999999 7899999998887533
No 39
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=96.63 E-value=0.00074 Score=62.96 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=38.9
Q ss_pred EecCCCc--EEEEEEEEEecceeEEEe--CCCCCCccCCcccc-cccccee
Q psy11392 63 FRPFVSE--IIIGKIRSCSKEGVHDSQ--SSNQPEQPISDSTV-KDILKYF 108 (169)
Q Consensus 63 FrPf~GE--VVeG~V~~vt~~GiFV~l--Gp~dGlIhISd~s~-~e~i~~~ 108 (169)
+++..|+ +.+|+|++++++|+||.+ .+++|+||+|+++. ++|..|.
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d 604 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEE
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEc
Confidence 3568899 999999999999999999 35899999999976 5665554
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.62 E-value=0.0013 Score=60.64 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=35.4
Q ss_pred ecCCCcEEEEEEEEEecc--eeEEEeCC-CCCCccCCccccc
Q psy11392 64 RPFVSEIIIGKIRSCSKE--GVHDSQSS-NQPEQPISDSTVK 102 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~--GiFV~lGp-~dGlIhISd~s~~ 102 (169)
+|.+|.|..|+|+++.++ |+||++|+ -+|++|+||++|.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~ 83 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIARE 83 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGG
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChh
Confidence 357899999999999999 99999995 5799999999886
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.61 E-value=0.00072 Score=59.43 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=37.5
Q ss_pred CCcEEEEEEEEEecceeEEEeCCCCCCccCCccccc------cccceecc
Q psy11392 67 VSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDSTVK------DILKYFAE 110 (169)
Q Consensus 67 ~GEVVeG~V~~vt~~GiFV~lGp~dGlIhISd~s~~------e~i~~~~~ 110 (169)
.|+++.|+|.++++.|+||++|..+|++|.++++-+ |-+++++.
T Consensus 134 ~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~ip~E~~~vGD~Vkv~V~ 183 (344)
T 1hh2_P 134 KGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYII 183 (344)
T ss_dssp TTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSCTTCCCCTTCEEEEEEE
T ss_pred CCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHcCCCcCCCCCCEEEEEEE
Confidence 699999999999999999999999999999988642 44555543
No 42
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.0085 Score=58.67 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=37.2
Q ss_pred ecCCCcEEEEEEEEEecceeEEEeCC--CCCCccCCccc-cccccceec
Q psy11392 64 RPFVSEIIIGKIRSCSKEGVHDSQSS--NQPEQPISDST-VKDILKYFA 109 (169)
Q Consensus 64 rPf~GEVVeG~V~~vt~~GiFV~lGp--~dGlIhISd~s-~~e~i~~~~ 109 (169)
++. |++.+|+|++++++|+||.+.. ++|+||+|+++ .++|..|.-
T Consensus 884 ~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde 931 (977)
T 2wp8_J 884 RNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDE 931 (977)
T ss_dssp HHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEET
T ss_pred ccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcc
Confidence 345 9999999999999999999974 89999999986 455555543
No 43
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.06 E-value=0.0069 Score=53.74 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=40.9
Q ss_pred EecCCCcEEEEEEEE----EecceeEEEeCC----CCCCccCCccccc------cccceeccc
Q psy11392 63 FRPFVSEIIIGKIRS----CSKEGVHDSQSS----NQPEQPISDSTVK------DILKYFAEK 111 (169)
Q Consensus 63 FrPf~GEVVeG~V~~----vt~~GiFV~lGp----~dGlIhISd~s~~------e~i~~~~~~ 111 (169)
|....||++.|+|.+ +++.++||++|. .+|++|.+|++=. |-+++|+.+
T Consensus 126 f~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 126 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVG 188 (366)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEE
T ss_pred HHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEE
Confidence 455799999999999 999999999998 9999999987643 666676654
No 44
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=93.22 E-value=0.027 Score=53.48 Aligned_cols=42 Identities=7% Similarity=-0.066 Sum_probs=34.5
Q ss_pred CCCcEEEEEEEEEecceeEEEeCC--CCCCccCCccc-ccccccee
Q psy11392 66 FVSEIIIGKIRSCSKEGVHDSQSS--NQPEQPISDST-VKDILKYF 108 (169)
Q Consensus 66 f~GEVVeG~V~~vt~~GiFV~lGp--~dGlIhISd~s-~~e~i~~~ 108 (169)
.. ++.+|+|++++++|+||.+.. ++|+||+|+++ -+++..|.
T Consensus 669 ~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd 713 (760)
T 2vnu_D 669 NE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFD 713 (760)
T ss_dssp CC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEE
T ss_pred Cc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEc
Confidence 44 899999999999999999974 79999999886 34554454
No 45
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.07 E-value=0.03 Score=47.36 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=41.0
Q ss_pred EEecCCCcEEEEEEEE----EecceeEEEeCC----CCCCccCCccccc------cccceeccc
Q psy11392 62 VFRPFVSEIIIGKIRS----CSKEGVHDSQSS----NQPEQPISDSTVK------DILKYFAEK 111 (169)
Q Consensus 62 vFrPf~GEVVeG~V~~----vt~~GiFV~lGp----~dGlIhISd~s~~------e~i~~~~~~ 111 (169)
.|+...||+|.|+|.+ +++..++|++|- .+|.++.+|+.-. |-+++|+.+
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~~ 65 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVG 65 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEE
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEEE
Confidence 4788899999999999 899999999997 8999998887643 666777654
No 46
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=89.33 E-value=0.2 Score=36.03 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=28.2
Q ss_pred CCcEEEEEEEEE---ecceeEEE--eCCCCCCccCCccccccc
Q psy11392 67 VSEIIIGKIRSC---SKEGVHDS--QSSNQPEQPISDSTVKDI 104 (169)
Q Consensus 67 ~GEVVeG~V~~v---t~~GiFV~--lGp~dGlIhISd~s~~e~ 104 (169)
.++...|+|+.. ..+| |+. -|.-|.++|+|+++|+.+
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~ 54 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA 54 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC
T ss_pred ccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc
Confidence 467789999988 4589 665 567999999999998754
No 47
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=87.57 E-value=0.0021 Score=51.47 Aligned_cols=84 Identities=8% Similarity=0.013 Sum_probs=49.7
Q ss_pred hhhcCceee--CCeeEEEEE---eee---e---eeccceEeeCCCc--eeEEEEEEEEEEec------------------
Q psy11392 17 DGASHTKVF--PNVGLCMML---YDI---T---KIEDSVIIPGDGA--SHTKVEFRYVVFRP------------------ 65 (169)
Q Consensus 17 ~ekyegKVi--~~vGLiV~V---~dI---~---~I~eG~I~pgDG~--~~~~V~FraIvFrP------------------ 65 (169)
-+.+.|+|. .+.|..|.+ .++ . +++.+++.+..-. ++.+|+.+++..+|
T Consensus 16 G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~p~~ 95 (182)
T 1kl9_A 16 EDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAI 95 (182)
T ss_dssp TCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHHHHH
T ss_pred CCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcChHH
Confidence 345677774 466999988 222 2 3444555432221 45677788877776
Q ss_pred ------CCCcEEEEEEEEEec-ceeEEEeC-CCCCCccCCccccc
Q psy11392 66 ------FVSEIIIGKIRSCSK-EGVHDSQS-SNQPEQPISDSTVK 102 (169)
Q Consensus 66 ------f~GEVVeG~V~~vt~-~GiFV~lG-p~dGlIhISd~s~~ 102 (169)
..|.++.|+|+++++ +| +.+. +++|++|+|+++|.
T Consensus 96 ~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~ 138 (182)
T 1kl9_A 96 KCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFD 138 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHH
T ss_pred HHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchh
Confidence 445667788888887 88 5553 46888898877775
No 48
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=83.37 E-value=1.2 Score=38.07 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred EecCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccc
Q psy11392 63 FRPFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDST 100 (169)
Q Consensus 63 FrPf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s 100 (169)
+.|.+|.+|.|+|++++...+.|+++ ++++.||+++..
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~ 161 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE 161 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC
Confidence 67999999999999999999999997 567999987543
No 49
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=40.52 E-value=23 Score=24.82 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=30.6
Q ss_pred cCCCcEEEEEEEEEecceeEEEeC-CCCCCccCCccccc
Q psy11392 65 PFVSEIIIGKIRSCSKEGVHDSQS-SNQPEQPISDSTVK 102 (169)
Q Consensus 65 Pf~GEVVeG~V~~vt~~GiFV~lG-p~dGlIhISd~s~~ 102 (169)
|..|+..-|+|+++++.++-|.++ .-.+.|..++|.|-
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA 69 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAA 69 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTT
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhh
Confidence 556889999999999999999884 35555667778886
No 50
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=39.14 E-value=5.1 Score=38.36 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=15.3
Q ss_pred EEEEE--EecceeEEEeCCCCCCccCCcccccc
Q psy11392 73 GKIRS--CSKEGVHDSQSSNQPEQPISDSTVKD 103 (169)
Q Consensus 73 G~V~~--vt~~GiFV~lGp~dGlIhISd~s~~e 103 (169)
|++.+ +.++|+||+++. +|.+|+|..+|..
T Consensus 617 Gk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~ 648 (757)
T 1e3p_A 617 RQMINQIQEDTGAEITIED-DGTIYIGAADGPA 648 (757)
T ss_dssp ----CTTCCCCCSCC---------CCCBSSHHH
T ss_pred ceeeehhhHhhCCEEEecC-CceEEEecCCHHH
Confidence 55555 577999999997 9999999999874
No 51
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.87 E-value=35 Score=21.38 Aligned_cols=25 Identities=48% Similarity=0.670 Sum_probs=18.3
Q ss_pred hhhhcchhh-hhhhhHHHHHHhhhhh
Q psy11392 128 ALRSLPRHL-FLKAKKEIFEAVHKYE 152 (169)
Q Consensus 128 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (169)
-|..|..|| |.||.-|.--|.||+|
T Consensus 21 elknlkehlkfakaelefelaahkfe 46 (46)
T 3he4_B 21 ELKNLKEHLKFAKAELEFELAAHKFE 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccC
Confidence 467778887 6677777666888875
No 52
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=21.41 E-value=76 Score=23.69 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.5
Q ss_pred EEEEEEecCCCcEEEEEEEEEec--ceeEEEeCCCCCCccCCccccccccceecccCCCcchhhhh
Q psy11392 58 FRYVVFRPFVSEIIIGKIRSCSK--EGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDFL 121 (169)
Q Consensus 58 FraIvFrPf~GEVVeG~V~~vt~--~GiFV~lGp~dGlIhISd~s~~e~i~~~~~~d~~~~~~~~~ 121 (169)
|++-+|.-.+. --|+|-++-- ...|+++=+.+|.. ..|++..-+.|..-+++++++.||
T Consensus 53 fNapVy~enK~--~IGKVdEIFGPin~~YfsVK~~~gv~---a~Sfk~gdk~YId~~kllPl~rFl 113 (114)
T 3u28_C 53 FNAPIYLENKT--QVGKVDEILGPLNEVFFTIKCGDGVQ---ATSFKEGDKFYIAADKLLPIERFL 113 (114)
T ss_dssp TTCEEECTTCC--EEEEEEEEESBTTSCEEEEEECTTCC---GGGCCTTCEEEEEGGGEECGGGGC
T ss_pred CCCEeEccCCc--cceeEeEEeCCCCccEEEEEecCCCc---ccccccCCEEEECccccCcHHhcC
Confidence 55555654444 4588888754 46667776777632 246788999999999999999997
Done!