Your job contains 1 sequence.
>psy11392
MLYDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRY
VVFRPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDILKYFAEKDKPDPVRDF
LMGAIAPALRSLPRHLFLKAKKEIFEAVHKYEMIAEEQSGDQYEYTLGA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11392
(169 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1BV29 - symbol:POLR3H "Uncharacterized protein... 253 1.1e-21 1
ZFIN|ZDB-GENE-040718-179 - symbol:polr3h "polymerase (RNA... 252 1.5e-21 1
UNIPROTKB|F1ML03 - symbol:POLR3H "DNA-directed RNA polyme... 251 1.9e-21 1
UNIPROTKB|F1SRD6 - symbol:POLR3H "Uncharacterized protein... 251 1.9e-21 1
MGI|MGI:1926179 - symbol:Polr3h "polymerase (RNA) III (DN... 251 1.9e-21 1
RGD|1305889 - symbol:Polr3h "polymerase (RNA) III (DNA di... 251 1.9e-21 1
UNIPROTKB|Q2T9X1 - symbol:POLR3H "DNA-directed RNA polyme... 250 2.4e-21 1
UNIPROTKB|F8WDV1 - symbol:POLR3H "DNA-directed RNA polyme... 242 1.7e-20 1
UNIPROTKB|Q9Y535 - symbol:POLR3H "DNA-directed RNA polyme... 242 1.7e-20 1
UNIPROTKB|E2RRG9 - symbol:POLR3H "Uncharacterized protein... 240 2.7e-20 1
FB|FBgn0036188 - symbol:CG7339 species:7227 "Drosophila m... 233 1.5e-19 1
SGD|S000001627 - symbol:RPC25 "RNA polymerase III subunit... 179 7.9e-14 1
POMBASE|SPBC2G5.07c - symbol:rpc25 "DNA-directed RNA poly... 173 3.4e-13 1
WB|WBGene00014111 - symbol:rpc-25 species:6239 "Caenorhab... 170 7.1e-13 1
TAIR|locus:2033077 - symbol:AT1G06790 species:3702 "Arabi... 154 3.5e-11 1
CGD|CAL0005692 - symbol:orf19.443 species:5476 "Candida a... 145 3.2e-10 1
ASPGD|ASPL0000045357 - symbol:AN1447 species:162425 "Emer... 143 5.2e-10 1
DICTYBASE|DDB_G0273523 - symbol:rpc25-2 "RNA polymerase I... 138 3.4e-09 1
DICTYBASE|DDB_G0273425 - symbol:rpc25-1 "RNA polymerase I... 138 3.4e-09 1
UNIPROTKB|E7ERZ2 - symbol:POLR3H "DNA-directed RNA polyme... 133 5.9e-09 1
SGD|S000002812 - symbol:RPB7 "RNA polymerase II subunit B... 119 3.4e-07 1
>UNIPROTKB|E1BV29 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 InterPro:IPR013238
Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AADN02006068 IPI:IPI00580368
Ensembl:ENSGALT00000019488 Uniprot:E1BV29
Length = 209
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ +S+ + KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI++G+I+SCS++GVH S
Sbjct: 81 LDEILVGEIKSCSQDGVHVS 100
Score = 106 (42.4 bits), Expect = 0.00021, P = 0.00021
Identities = 20/23 (86%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
LYDITK+EDS I PGDGASHTKV
Sbjct: 48 LYDITKLEDSYIFPGDGASHTKV 70
>ZFIN|ZDB-GENE-040718-179 [details] [associations]
symbol:polr3h "polymerase (RNA) III (DNA directed)
polypeptide H" species:7955 "Danio rerio" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
ZFIN:ZDB-GENE-040718-179 GO:GO:0003677 GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:BC076336
IPI:IPI00495469 RefSeq:NP_001002476.1 UniGene:Dr.78164
ProteinModelPortal:Q6DGK6 STRING:Q6DGK6 GeneID:436749
KEGG:dre:436749 InParanoid:Q6DGK6 NextBio:20831187
ArrayExpress:Q6DGK6 Uniprot:Q6DGK6
Length = 214
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 47/64 (73%), Positives = 53/64 (82%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV NVGLC+ LYDITK+EDS I PGDGASHTKV FRYVVF PF+ EI++GKI+ CS EG
Sbjct: 37 KVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILLGKIKGCSAEG 96
Query: 83 VHDS 86
VH S
Sbjct: 97 VHVS 100
Score = 106 (42.4 bits), Expect = 0.00023, P = 0.00023
Identities = 20/23 (86%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
LYDITK+EDS I PGDGASHTKV
Sbjct: 48 LYDITKLEDSYIFPGDGASHTKV 70
>UNIPROTKB|F1ML03 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9913 "Bos taurus" [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798 IPI:IPI00711860
UniGene:Bt.55567 InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
OMA:NVGLCIA GeneTree:ENSGT00390000004383 EMBL:DAAA02014732
Ensembl:ENSBTAT00000006987 Uniprot:F1ML03
Length = 204
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>UNIPROTKB|F1SRD6 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:CU633382 RefSeq:XP_001929168.1
UniGene:Ssc.54915 Ensembl:ENSSSCT00000000069 GeneID:100157033
KEGG:ssc:100157033 Uniprot:F1SRD6
Length = 204
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>MGI|MGI:1926179 [details] [associations]
symbol:Polr3h "polymerase (RNA) III (DNA directed)
polypeptide H" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISO] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 MGI:MGI:1926179
GO:GO:0003677 GO:GO:0045087 GO:GO:0051607 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
EMBL:AK019868 EMBL:BC010793 IPI:IPI00187529 RefSeq:NP_084505.2
UniGene:Mm.215115 ProteinModelPortal:Q9D2C6 SMR:Q9D2C6
STRING:Q9D2C6 PaxDb:Q9D2C6 PRIDE:Q9D2C6 Ensembl:ENSMUST00000023113
GeneID:78929 KEGG:mmu:78929 UCSC:uc007wxr.1
GeneTree:ENSGT00390000004383 InParanoid:Q9D2C6 ChiTaRS:POLR3H
NextBio:349786 Bgee:Q9D2C6 CleanEx:MM_POLR3H Genevestigator:Q9D2C6
GermOnline:ENSMUSG00000022476 Uniprot:Q9D2C6
Length = 204
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>RGD|1305889 [details] [associations]
symbol:Polr3h "polymerase (RNA) III (DNA directed) polypeptide
H" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA;ISO] [GO:0005813 "centrosome"
evidence=IEA;ISO] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=ISO] [GO:0006383 "transcription from
RNA polymerase III promoter" evidence=IEA;ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 RGD:1305889 GO:GO:0003677
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 EMBL:CH473950
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
SUPFAM:SSF88798 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
KO:K03022 OrthoDB:EOG434W70 InterPro:IPR013238 Pfam:PF08292
TIGRFAMs:TIGR00448 OMA:NVGLCIA GeneTree:ENSGT00390000004383
EMBL:BC167088 IPI:IPI00210015 RefSeq:NP_001120767.1
UniGene:Rn.13037 SMR:B2RZB0 STRING:B2RZB0
Ensembl:ENSRNOT00000005943 GeneID:300088 KEGG:rno:300088
UCSC:RGD:1305889 NextBio:646311 Genevestigator:B2RZB0
Uniprot:B2RZB0
Length = 204
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>UNIPROTKB|Q2T9X1 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BC111227
IPI:IPI00711860 RefSeq:NP_001070430.1 UniGene:Bt.55567
ProteinModelPortal:Q2T9X1 STRING:Q2T9X1 GeneID:767843
KEGG:bta:767843 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
InParanoid:Q2T9X1 KO:K03022 OrthoDB:EOG434W70 NextBio:20918210
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 Uniprot:Q2T9X1
Length = 204
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 48/80 (60%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>UNIPROTKB|F8WDV1 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR005576 Pfam:PF03876
GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120
SUPFAM:SSF88798 HGNC:HGNC:30349 IPI:IPI00604415
ProteinModelPortal:F8WDV1 SMR:F8WDV1 PRIDE:F8WDV1
Ensembl:ENST00000431534 ArrayExpress:F8WDV1 Bgee:F8WDV1
Uniprot:F8WDV1
Length = 123
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FR VVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDSQSSNQPEQ 94
+ EI+IGKI+ CS EGVH + + ++
Sbjct: 81 LDEILIGKIKGCSPEGVHGNSGPDASDK 108
Score = 98 (39.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 2 LYDITKIEDSVIIPGDGASHTKV 24
L+DITK+ED+ + PGDGASHTKV
Sbjct: 48 LFDITKLEDAYVFPGDGASHTKV 70
>UNIPROTKB|Q9Y535 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IDA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=IDA;TAS] [GO:0006385 "transcription elongation from RNA
polymerase III promoter" evidence=TAS] [GO:0006386 "termination of
RNA polymerase III transcription" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] Reactome:REACT_71 InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0005813 GO:GO:0003677
EMBL:CH471095 GO:GO:0045087 GO:GO:0051607 EMBL:AL023553
InterPro:IPR012340 SUPFAM:SSF50249 Reactome:REACT_1788
GO:GO:0005666 GO:GO:0003899 GO:GO:0006386 GO:GO:0006385
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:AY092087
EMBL:AB051452 EMBL:CR456459 EMBL:BC017248 EMBL:BC088367
IPI:IPI00215871 IPI:IPI00289667 RefSeq:NP_001018060.1
RefSeq:NP_001018062.1 RefSeq:NP_612211.1 UniGene:Hs.712617
ProteinModelPortal:Q9Y535 SMR:Q9Y535 IntAct:Q9Y535 STRING:Q9Y535
DMDM:29428071 PaxDb:Q9Y535 PRIDE:Q9Y535 DNASU:171568
Ensembl:ENST00000337566 Ensembl:ENST00000355209
Ensembl:ENST00000396504 Ensembl:ENST00000407461 GeneID:171568
KEGG:hsa:171568 UCSC:uc003baf.3 UCSC:uc003bai.2
GeneCards:GC22M041921 HGNC:HGNC:30349 HPA:HPA046787
neXtProt:NX_Q9Y535 PharmGKB:PA134994174 InParanoid:Q9Y535
OMA:NVGLCIA PhylomeDB:Q9Y535 GenomeRNAi:171568 NextBio:89296
ArrayExpress:Q9Y535 Bgee:Q9Y535 CleanEx:HS_POLR3H
Genevestigator:Q9Y535 GermOnline:ENSG00000100413 Uniprot:Q9Y535
Length = 204
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 47/80 (58%), Positives = 58/80 (72%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTKV FR VVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IGKI+ CS EGVH S
Sbjct: 81 LDEILIGKIKGCSPEGVHVS 100
>UNIPROTKB|E2RRG9 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006383 "transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AAEX03007296 RefSeq:XP_849136.1
ProteinModelPortal:E2RRG9 Ensembl:ENSCAFT00000001618 GeneID:607850
KEGG:cfa:607850 NextBio:20893547 Uniprot:E2RRG9
Length = 204
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 45/80 (56%), Positives = 59/80 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ DS+ + KV +VGLC+ L+DIT++ED+ + PGDGASHTKV FRYVVF PF
Sbjct: 21 KLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVFPGDGASHTKVHFRYVVFHPF 80
Query: 67 VSEIIIGKIRSCSKEGVHDS 86
+ EI+IG+I+ CS EGVH S
Sbjct: 81 LDEILIGRIKGCSPEGVHVS 100
>FB|FBgn0036188 [details] [associations]
symbol:CG7339 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR005576 Pfam:PF03876 EMBL:AE014296 GO:GO:0022008
GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AY118479 RefSeq:NP_648490.1
UniGene:Dm.11797 SMR:Q9VTL6 IntAct:Q9VTL6 STRING:Q9VTL6
EnsemblMetazoa:FBtr0076107 EnsemblMetazoa:FBtr0331530 GeneID:39310
KEGG:dme:Dmel_CG7339 UCSC:CG7339-RA FlyBase:FBgn0036188
InParanoid:Q9VTL6 OrthoDB:EOG4F4QT4 GenomeRNAi:39310 NextBio:812992
Uniprot:Q9VTL6
Length = 240
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPF 66
K+ D+V D KV NVGLC+ L DI ++DS+I+PGDGASHT+V FRYVVFRP
Sbjct: 21 KLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPM 80
Query: 67 VSEIIIGKIRSCSKEGVH 84
V +I GKIR+CS+EGVH
Sbjct: 81 VGTVITGKIRNCSREGVH 98
>SGD|S000001627 [details] [associations]
symbol:RPC25 "RNA polymerase III subunit C25" species:4932
"Saccharomyces cerevisiae" [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 SGD:S000001627 GO:GO:0003677
EMBL:BK006944 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 EMBL:Z25464 Reactome:REACT_87991
GO:GO:0042797 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238
Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 OrthoDB:EOG4NCQP8 EMBL:U11048
EMBL:Z28144 PIR:S37973 RefSeq:NP_012778.1 PDB:2CKZ PDBsum:2CKZ
ProteinModelPortal:P35718 SMR:P35718 DIP:DIP-1414N IntAct:P35718
MINT:MINT-399757 STRING:P35718 PaxDb:P35718 EnsemblFungi:YKL144C
GeneID:853713 KEGG:sce:YKL144C CYGD:YKL144c
EvolutionaryTrace:P35718 NextBio:974722 Genevestigator:P35718
GermOnline:YKL144C Uniprot:P35718
Length = 212
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+ PNVGLC+ +YD+ +E+ + PGDG+S+ V FR VVF+PF+ EI+ G I C+ EG
Sbjct: 37 KIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>POMBASE|SPBC2G5.07c [details] [associations]
symbol:rpc25 "DNA-directed RNA polymerase III complex
subunit Rpc25" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=IMP] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
PomBase:SPBC2G5.07c GO:GO:0005829 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
SUPFAM:SSF88798 GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
EMBL:DQ156221 PIR:T40164 RefSeq:NP_596068.1 PDB:3AYH PDBsum:3AYH
ProteinModelPortal:O94285 STRING:O94285 EnsemblFungi:SPBC2G5.07c.1
GeneID:2540510 KEGG:spo:SPBC2G5.07c OrthoDB:EOG4NCQP8
NextBio:20801637 Uniprot:O94285
Length = 203
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV N+GL + +YD KI + +I GDG+S+ V FR ++FRPF E+++GKI+SCS+EG
Sbjct: 37 KVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>WB|WBGene00014111 [details] [associations]
symbol:rpc-25 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR005576
Pfam:PF03876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0006351
GO:GO:0040035 InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967
SMART:SM00316 GO:GO:0003899 EMBL:Z70783 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 PIR:T28049 RefSeq:NP_505625.1
ProteinModelPortal:Q23645 SMR:Q23645 STRING:Q23645 PaxDb:Q23645
EnsemblMetazoa:ZK856.10 GeneID:179418 KEGG:cel:CELE_ZK856.10
UCSC:ZK856.10 CTD:179418 WormBase:ZK856.10 InParanoid:Q23645
NextBio:905302 Uniprot:Q23645
Length = 239
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/61 (47%), Positives = 45/61 (73%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+ P++GLC+ +YDI +I DS I+PG+G +V+FR +VFRPFV E+I K+ S++G
Sbjct: 37 KIIPDLGLCICVYDINEIGDSYILPGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQG 96
Query: 83 V 83
+
Sbjct: 97 L 97
>TAIR|locus:2033077 [details] [associations]
symbol:AT1G06790 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899
UniGene:At.26438 UniGene:At.48160 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA EMBL:AY065288
EMBL:AY142661 IPI:IPI00527075 PIR:G86202 RefSeq:NP_172164.1
ProteinModelPortal:Q9M9Y6 SMR:Q9M9Y6 IntAct:Q9M9Y6 STRING:Q9M9Y6
PaxDb:Q9M9Y6 PRIDE:Q9M9Y6 DNASU:837190 EnsemblPlants:AT1G06790.1
GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6
PhylomeDB:Q9M9Y6 ProtClustDB:CLSN2682503 ArrayExpress:Q9M9Y6
Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6
Length = 204
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
KV ++GLC+ +YDI +E ++PGDGA+ KV R VVFRPFV E+I K + G
Sbjct: 37 KVLADLGLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANG 96
Query: 83 V 83
+
Sbjct: 97 L 97
>CGD|CAL0005692 [details] [associations]
symbol:orf19.443 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006384 "transcription initiation
from RNA polymerase III promoter" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 CGD:CAL0005692
GO:GO:0003677 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003899 EMBL:AACQ01000078 EMBL:AACQ01000077 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
RefSeq:XP_715878.1 RefSeq:XP_715928.1 ProteinModelPortal:Q5A298
SMR:Q5A298 STRING:Q5A298 GeneID:3642414 GeneID:3642463
KEGG:cal:CaO19.443 KEGG:cal:CaO19.8073 Uniprot:Q5A298
Length = 195
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 24/61 (39%), Positives = 42/61 (68%)
Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
K+ N+GL + ++DI I+D ++ PGDG S+ +V FR +V++PF EI+ G + C+ +G
Sbjct: 37 KIIANLGLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKG 96
Query: 83 V 83
+
Sbjct: 97 I 97
>ASPGD|ASPL0000045357 [details] [associations]
symbol:AN1447 species:162425 "Emericella nidulans"
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] InterPro:IPR005576 Pfam:PF03876 EMBL:BN001307
GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACD01000022
GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238 Pfam:PF08292
OMA:NVGLCIA OrthoDB:EOG4NCQP8 RefSeq:XP_659051.1
ProteinModelPortal:Q5BDD3 STRING:Q5BDD3
EnsemblFungi:CADANIAT00008060 GeneID:2875482 KEGG:ani:AN1447.2
Uniprot:Q5BDD3
Length = 208
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 3 YDITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVV 62
Y IED++ + KV +GLC+ YD+ + D +I G G + V+FR +V
Sbjct: 21 YSSVAIEDNI----NEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIV 76
Query: 63 FRPFVSEIIIGKIRSCSKEGV 83
FRPF EI++GKI S ++ G+
Sbjct: 77 FRPFRGEIVLGKISSATENGI 97
>DICTYBASE|DDB_G0273523 [details] [associations]
symbol:rpc25-2 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 138 (53.6 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 4 DITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
++ IED + + +KV N GL + LYDI DS + GDG +H V FR VVF
Sbjct: 21 EVQTIEDEI----EKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVF 76
Query: 64 RPFVSEIIIGKIRSCSKEGVHDS 86
+PF E++ G I+ S++ + S
Sbjct: 77 KPFKGEVLEGVIKKSSRQSIQIS 99
>DICTYBASE|DDB_G0273425 [details] [associations]
symbol:rpc25-1 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 138 (53.6 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 4 DITKIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
++ IED + + +KV N GL + LYDI DS + GDG +H V FR VVF
Sbjct: 21 EVQTIEDEI----EKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVF 76
Query: 64 RPFVSEIIIGKIRSCSKEGVHDS 86
+PF E++ G I+ S++ + S
Sbjct: 77 KPFKGEVLEGVIKKSSRQSIQIS 99
>UNIPROTKB|E7ERZ2 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR005576 Pfam:PF03876
GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120
SUPFAM:SSF88798 HGNC:HGNC:30349 IPI:IPI01020892
ProteinModelPortal:E7ERZ2 SMR:E7ERZ2 Ensembl:ENST00000442616
ArrayExpress:E7ERZ2 Bgee:E7ERZ2 Uniprot:E7ERZ2
Length = 70
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 7 KIEDSVIIPGDGASHTKVFPNVGLCMMLYDITKIEDSVIIPGDGASHTK 55
K+ DS+ + KV NVGLC+ L+DITK+ED+ + PGDGASHTK
Sbjct: 21 KLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTK 69
Score = 94 (38.1 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 2 LYDITKIEDSVIIPGDGASHTK 23
L+DITK+ED+ + PGDGASHTK
Sbjct: 48 LFDITKLEDAYVFPGDGASHTK 69
>SGD|S000002812 [details] [associations]
symbol:RPB7 "RNA polymerase II subunit B16" species:4932
"Saccharomyces cerevisiae" [GO:0003727 "single-stranded RNA
binding" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045948 "positive regulation of
translational initiation" evidence=IMP] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IGI] [GO:0003697
"single-stranded DNA binding" evidence=IMP;IDA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0000291 "nuclear-transcribed mRNA catabolic process,
exonucleolytic" evidence=IGI] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IDA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 SGD:S000002812
GO:GO:0003727 EMBL:BK006938 GO:GO:0003697 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
EMBL:U32274 GO:GO:0045948 GO:GO:0060213 InterPro:IPR022967
SMART:SM00316 GO:GO:0003899 GO:GO:0000291 RefSeq:NP_010692.3
GeneID:852013 KEGG:sce:YDR404C KO:K03015 GO:GO:0005665 KO:K00601
RefSeq:NP_010696.3 GeneID:852017 KEGG:sce:YDR408C PDB:1NT9 PDB:1PQV
PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z PDB:2R92 PDB:2R93
PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3PO2 PDB:3PO3
PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G
PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR
PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM PDBsum:1Y1V
PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS PDB:1Y14 PDBsum:1Y14 eggNOG:COG1095
HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GeneTree:ENSGT00390000008975 OMA:HAIGSIK OrthoDB:EOG4JT3FQ
EMBL:S59775 PIR:S30140 ProteinModelPortal:P34087 SMR:P34087
DIP:DIP-725N IntAct:P34087 MINT:MINT-539630 STRING:P34087
PaxDb:P34087 PeptideAtlas:P34087 EnsemblFungi:YDR404C CYGD:YDR404c
EvolutionaryTrace:P34087 NextBio:970216 Genevestigator:P34087
GermOnline:YDR404C Uniprot:P34087
Length = 171
Score = 119 (46.9 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEG 82
LC++ YD I+ I+P DG++ V++R VVF+PF E++ G + SCS+ G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHG 98
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 169 169 0.00082 108 3 11 22 0.40 32
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 547 (58 KB)
Total size of DFA: 133 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.78u 0.09s 16.87t Elapsed: 00:00:11
Total cpu time: 16.78u 0.09s 16.87t Elapsed: 00:00:11
Start: Thu Aug 15 13:25:40 2013 End: Thu Aug 15 13:25:51 2013