RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11392
         (169 letters)



>d1go3e2 d.230.1.1 (E:1-78) N-terminal, heterodimerisation domain
          of RBP7 (RpoE) {Archaeon Methanococcus jannaschii
          [TaxId: 2190]}
          Length = 78

 Score = 57.0 bits (138), Expect = 3e-12
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
          ++  +VG  + + D+  I +  ++ GDG+++  V F  +V+
Sbjct: 37 RLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVY 77



 Score = 33.5 bits (77), Expect = 0.002
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 1  MLYDITKIEDSVIIPGDGASHTKV 24
           + D+  I +  ++ GDG+++  V
Sbjct: 47 SIVDVKDIGEGKVVHGDGSAYHPV 70


>d1y14b2 d.230.1.1 (B:1-80) N-terminal, heterodimerisation domain
          of RBP7 (RpoE) {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 23 KVFPNVG--LCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFR 64
                G  LC++ YD   I+   I+P DG++   V++R VVF+
Sbjct: 37 SCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80



 Score = 30.8 bits (70), Expect = 0.015
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 1  MLYDITKIEDSVIIPGDGASHTKV 24
          + YD   I+   I+P DG++   V
Sbjct: 49 LDYDNIDIQRGRILPTDGSAEFNV 72


>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain
          of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 77

 Score = 51.2 bits (123), Expect = 5e-10
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 23 KVFPNVGLCMMLYDITKIEDSVIIPGDGASHTKVEFRYVVF 63
                G  + +  I  I   VI PG G     V+++ +VF
Sbjct: 37 TCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77



 Score = 30.0 bits (68), Expect = 0.027
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 1  MLYDITKIEDSVIIPGDGASHTKV 24
           +  I  I   VI PG G     V
Sbjct: 47 AVTTIDNIGAGVIQPGRGFVLYPV 70


>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 94

 Score = 26.4 bits (58), Expect = 0.78
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 64 RPFVSEIIIGKIRSCSKEGVH 84
          RPF  E++   +   +K G+ 
Sbjct: 1  RPFKGEVVDAVVTQVNKVGLF 21


>d2fgga1 d.50.5.1 (A:4-87) Hypothetical protein Rv2632c/MT2708
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 84

 Score = 24.4 bits (53), Expect = 3.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 124 AIAPALRSLPRHLFLKAKKEIFEAVHK 150
           AIA AL  L   LF     +I  + H+
Sbjct: 57  AIARALSDLANQLFALTSSDIEASTHQ 83


>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 91

 Score = 24.0 bits (52), Expect = 5.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 65 PFVSEIIIGKIRSCSKEGVH 84
          PF  E++ G + SCS+ G  
Sbjct: 1  PFKGEVVDGTVVSCSQHGFE 20


>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
           CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 211

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 31  CMMLYDITKIEDSVIIPGDGASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSN 90
             +   + K        G      K   +  V+    S+          +     + + N
Sbjct: 116 EGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVN 175

Query: 91  QPEQ----PISDSTVKDILKYFAEKDKP 114
           + E     P+S+ T  DI +Y   +  P
Sbjct: 176 KGESIRVFPLSNWTELDIWQYIYLEGIP 203


>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
           subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 326

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 50  GASHTKVEFRYVVFRPFVSEIIIGKIRSCSKEGVHDSQSSNQPEQPISDSTVKDI 104
           G +  ++   + +    VS +++G   + + E + ++  + Q    +S S V +I
Sbjct: 265 GCTLPQLAIAWCLRNEGVSSVLLG---ASNAEQLMENIGAIQVLPKLSSSIVHEI 316


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 635,350
Number of extensions: 28970
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 15
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)