BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11394
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/399 (46%), Positives = 226/399 (56%), Gaps = 50/399 (12%)
Query: 9 PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
P H Q D ++P DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16 PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69
Query: 69 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A FRED
Sbjct: 70 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
EG+IKEEE+PLP +EFQR+VWLLFEYPESS AR CLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPXXXXXXXXX 233
F+T +N T I + TDPFF++ET I +
Sbjct: 190 DENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248
Query: 234 XXXXVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
+M + ++ I +I G L AE D + V+ + V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301
Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXL 352
R F L +S+ ++G+++ + L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341
Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
FSSAVYFAEA +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 311 bits (797), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 186/399 (46%), Positives = 225/399 (56%), Gaps = 50/399 (12%)
Query: 9 PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
P H Q D ++P DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16 PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69
Query: 69 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A FRED
Sbjct: 70 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
EG+IKEEE+PLP +EFQR+VWLLFEYPESS AR CLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPXXXXXXXXX 233
F+T + T I + TDPFF++ET I +
Sbjct: 190 DENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248
Query: 234 XXXXVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
+M + ++ I +I G L AE D + V+ + V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301
Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXL 352
R F L +S+ ++G+++ + L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341
Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
FSSAVYFAEA +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 310 bits (794), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 184/392 (46%), Positives = 231/392 (58%), Gaps = 40/392 (10%)
Query: 9 PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
P H Q D ++P DH+ ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 35 PGHPQ-----DTYDP-EADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 88
Query: 69 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A FRED
Sbjct: 89 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 148
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
EG+IKEEE+PLP +EFQR+VWLLFEYPESS AR CLETLP F+
Sbjct: 149 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 208
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPXXXXXXXXXXXXXVVM 240
F+T + T I + TDPFF++ET I+
Sbjct: 209 DENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 267
Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRC 300
+ ++ I+ + ++ + T++ E+ F+++ VV + + MR
Sbjct: 268 GFFTNIMNIIDIV--AIIPYYVTIFLTESNKSVLQFQNV-----RRVVQIFRI----MRI 316
Query: 301 GAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXLFSSAVYF 359
LR F L +S+ ++G+++ + LFSSAVYF
Sbjct: 317 -------------LRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF 363
Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AEA +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 364 AEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/392 (46%), Positives = 231/392 (58%), Gaps = 40/392 (10%)
Query: 9 PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
P H Q D ++P DH+ ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 35 PGHPQ-----DTYDP-EADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 88
Query: 69 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A FRED
Sbjct: 89 DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 148
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
EG+IKEEE+PLP +EFQR+VWLLFEYPESS AR CLETLP F+
Sbjct: 149 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 208
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPXXXXXXXXXXXXXVVM 240
F+T + T I + TDPFF++ET I+
Sbjct: 209 DENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWWSFEFLVRFFACPSKA 267
Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRC 300
+ ++ I+ + ++ + T++ E+ F+++ VV + + MR
Sbjct: 268 GFFTNIMNIIDIV--AIIPYYVTIFLTESNKSVLQFQNV-----RRVVQIFRI----MRI 316
Query: 301 GAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXLFSSAVYF 359
LR F L +S+ ++G+++ + LFSSAVYF
Sbjct: 317 -------------LRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF 363
Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AEA +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 364 AEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395
>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
Length = 99
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/99 (86%), Positives = 93/99 (93%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRPSFDAILYYY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEG 130
QSGGRLRRPVNVPLD+FSEEI+FYELG+ A FREDEG
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEG 99
>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 100
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/100 (86%), Positives = 95/100 (95%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
QSGGRLRRPVNVPLDVFSEEIKFYELG+ A ++REDEGF
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYELGENAFERYREDEGF 100
>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 103
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 91/98 (92%)
Query: 27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDA 86
DH+ CERVVIN+SGLRFETQL+TL QFP TLLG+P +R+RYFDPLRNEYFFDRNRPSFDA
Sbjct: 6 DHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDA 65
Query: 87 ILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNK 124
ILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ A K
Sbjct: 66 ILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEK 103
>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1
Domain
Length = 100
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/100 (85%), Positives = 95/100 (95%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
QSGGRLRRPV+VPLDVFSEEIKFYELG+ A ++REDEGF
Sbjct: 61 QSGGRLRRPVDVPLDVFSEEIKFYELGENAFERYREDEGF 100
>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1
Domain
Length = 100
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/100 (85%), Positives = 94/100 (94%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
QSGGRLRRP NVPLDVFSEEIKFYELG+ A ++REDEGF
Sbjct: 61 QSGGRLRRPRNVPLDVFSEEIKFYELGENAFERYREDEGF 100
>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1
Domain
Length = 100
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/100 (85%), Positives = 94/100 (94%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
QSGGRLRRPV VPLDVFSEEIKFYELG+ A ++REDEGF
Sbjct: 61 QSGGRLRRPVAVPLDVFSEEIKFYELGENAFERYREDEGF 100
>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|E Chain E, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|F Chain F, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|G Chain G, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|H Chain H, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
Length = 87
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRPSFDAILYYY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELG 118
QSGGRLRRPVNVPLD+FSEEI+FYELG
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYELG 87
>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 95
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/95 (84%), Positives = 89/95 (93%)
Query: 31 CERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYY 90
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+
Sbjct: 1 MERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYF 60
Query: 91 YQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKF 125
YQSGGRLRRPVNVPLDVFSEEIKFYELG+ A ++
Sbjct: 61 YQSGGRLRRPVNVPLDVFSEEIKFYELGENAFERY 95
>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|B Chain B, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|C Chain C, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|D Chain D, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|E Chain E, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|F Chain F, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|G Chain G, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|H Chain H, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
Length = 87
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 84/87 (96%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVIN+SGLRFE QL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRPSFDAILYYY
Sbjct: 1 ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELG 118
QSGGRLRRPVNVPLD+FSEEI+FYELG
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYELG 87
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 29 DFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAIL 88
D RV+INV G+R ET TL + P T L + +DP+ NEYFFDR+ F I+
Sbjct: 2 DAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQII 61
Query: 89 YYYQSGGRLRRPVNVPLDVFSEEIKFYEL 117
YY+S G+L P +V +F EE++F+ L
Sbjct: 62 NYYRS-GKLHYPTDVCGPLFEEELEFWGL 89
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
+V+NVSG RF+T TL ++P+TLLG R ++ P +YFFDR+ F IL +Y++
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDF-FYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 94 GGRLRRPVNVPLDVFSEEIKFYEL-----GDVATNKFRE 127
G+L P + + + EE+ F+ L GD ++++
Sbjct: 61 -GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKD 98
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
E +V+NVSG RF+T TL ++P+TLLG + +F+ EYFFDR+ F +L +Y
Sbjct: 41 ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVLNFY 99
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGDVATNKFRE 127
++ G+L P + + +E+ FY +GD ++++
Sbjct: 100 RT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKD 139
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
E +V+NVSG RF+T TL ++P+TLLG + +F+ EYFFDR+ F +L +Y
Sbjct: 35 ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVLNFY 93
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGDVATNKFRE 127
++ G+L P + + +E+ FY +GD ++++
Sbjct: 94 RT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKD 133
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
E +V+NVSG RF+T TL ++P+TLLG + +F+ EYFFDR+ F +L +Y
Sbjct: 13 ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVLNFY 71
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGDVATNKFRE 127
++ G+L P + + +E+ FY +GD ++++
Sbjct: 72 RT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKD 111
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 356 AVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
A+Y E NS KS+ DA WWAVVT TTVGYGD+
Sbjct: 162 AIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 197
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 258 VLFSS-TVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
VL+ + +Y E S KS+ DA WWAVVT TTVGYGD+
Sbjct: 156 VLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 197
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 356 AVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
A+Y E NS KS+ DA WWAVVT TTVGYGD+
Sbjct: 150 AIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 185
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 258 VLFSS-TVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
VL+ + +Y E S KS+ DA WWAVVT TTVGYGD+
Sbjct: 144 VLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 185
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 256 GVVLFSSTV--YFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
GVVLF+ + Y E F SIP A WWAVVT++T GYGD
Sbjct: 137 GVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGD 180
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 356 AVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGD 390
A Y E + F SIP A WWAVVT++T GYGD
Sbjct: 146 AAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGD 180
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + S PDA WW+V T TTVGYGD+
Sbjct: 72 LAERGAPGAALISYPDALWWSVETATTVGYGDL 104
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 257 VVLFSST--VYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+VL + + AE G+ + S PDA WW+V T TTVGYGD+
Sbjct: 61 IVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL 104
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGD 390
AE G+ + S PDA WW+V T TTVGYGD
Sbjct: 29 AERGAPGAALISYPDAIWWSVETATTVGYGD 59
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 267 AEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
AE G+ + S PDA WW+V T TTVGYGD
Sbjct: 29 AERGAPGAALISYPDAIWWSVETATTVGYGD 59
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V+T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVITATTVGYGDL 60
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V+T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVITATTVGYGDL 60
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVATATTVGYGDL 81
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVATATTVGYGDL 81
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVATATTVGYGDL 60
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVATATTVGYGDL 60
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 280 PDAFWWAVVTMTTVGYGDM 298
PDA WWA+VT TTVGYGD+
Sbjct: 45 PDALWWAIVTATTVGYGDI 63
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 373 PDAFWWAVVTMTTVGYGDM 391
PDA WWA+VT TTVGYGD+
Sbjct: 45 PDALWWAIVTATTVGYGDI 63
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVSTATTVGYGDL 60
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVSTATTVGYGDL 60
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVQTATTVGYGDL 60
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVQTATTVGYGDL 60
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 27 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 27 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 29 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 61
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 29 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 61
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 27 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 27 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVHTATTVGYGDL 81
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVHTATTVGYGDL 81
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 56 LAERGAPGAQLITYPRALWWSVATATTVGYGDL 88
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 257 VVLFSST--VYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+VL + + AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 45 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDL 88
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 49 LAERGAPGAQLITYPAALWWSVETATTVGYGDL 81
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 247 IPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ +++ + AG S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 34 VLLVIVLLAG----SYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDL 81
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 28 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 247 IPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ +++ + AG S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 13 VLLVIVLLAG----SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 55 LAERGAPGAQLITYPRALWWSVETATTVGYGDL 87
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 257 VVLFSST--VYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+VL + + AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 44 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WW+V T T VGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATCVGYGDL 81
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WW+V T T VGYGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWSVETATCVGYGDL 81
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
AE G+ + + P A WWA T TTV YGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWACETATTVXYGDL 81
Score = 35.8 bits (81), Expect = 0.045, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
AE G+ + + P A WWA T TTV YGD+
Sbjct: 49 LAERGAPGAQLITYPRALWWACETATTVXYGDL 81
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA W++VVT+TTVGYGD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALWFSVVTLTTVGYGD 51
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 374 DAFWWAVVTMTTVGYGD 390
DA W++VVT+TTVGYGD
Sbjct: 35 DALWFSVVTLTTVGYGD 51
>pdb|2H8P|C Chain C, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|C Chain C, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|C Chain C, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 57
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGY 388
AE G+ + + P A WWA T TTVGY
Sbjct: 28 LAERGAPGAQLITYPRALWWACETATTVGY 57
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 266 FAEAGSDQSFFKSIPDAFWWAVVTMTTVGY 295
AE G+ + + P A WWA T TTVGY
Sbjct: 28 LAERGAPGAQLITYPRALWWACETATTVGY 57
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA +++VVT+TTVGYGD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALYFSVVTLTTVGYGD 51
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 374 DAFWWAVVTMTTVGYGD 390
DA +++VVT+TTVGYGD
Sbjct: 35 DALYFSVVTLTTVGYGD 51
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA +++VVT+TTVGYGD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALFFSVVTLTTVGYGD 51
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 374 DAFWWAVVTMTTVGYGD 390
DA +++VVT+TTVGYGD
Sbjct: 35 DALFFSVVTLTTVGYGD 51
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA +++VVT+TTVG+GD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALYFSVVTLTTVGFGD 51
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 374 DAFWWAVVTMTTVGYGD 390
DA +++VVT+TTVG+GD
Sbjct: 35 DALYFSVVTLTTVGFGD 51
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA +++VVT+TTVGYG+
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALYFSVVTLTTVGYGN 51
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 374 DAFWWAVVTMTTVGYGD 390
DA +++VVT+TTVGYG+
Sbjct: 35 DALYFSVVTLTTVGYGN 51
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA +++VVT+TTVGYG+
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALYFSVVTLTTVGYGE 51
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 374 DAFWWAVVTMTTVGYGD 390
DA +++VVT+TTVGYG+
Sbjct: 35 DALYFSVVTLTTVGYGE 51
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
F++ A N F AF+++V T+ TVGYGDM
Sbjct: 60 FATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM 98
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 365 ENSFFKSIPDAFWWAVVTMTTVGYGDM 391
EN+ S DAF+++V TM T+GYG +
Sbjct: 76 ENARPGSFTDAFFFSVQTMATIGYGKL 102
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 365 ENSFFKSIPDAFWWAVVTMTTVGYGDM 391
EN+ S DAF+++V TM T+GYG +
Sbjct: 76 ENARPGSFTDAFFFSVQTMATIGYGKL 102
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 365 ENSFFKSIPDAFWWAVVTMTTVGYGDM 391
EN+ S DAF+++V TM T+GYG +
Sbjct: 76 ENARPGSFTDAFFFSVQTMATIGYGKL 102
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 365 ENSFFKSIPDAFWWAVVTMTTVGYGDM 391
EN+ S DAF+++V TM T+GYG +
Sbjct: 76 ENARPGSFTDAFFFSVQTMATIGYGKL 102
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 365 ENSFFKSIPDAFWWAVVTMTTVGYGDM 391
EN+ S DAF+++V TM T+GYG +
Sbjct: 76 ENARPGSFTDAFFFSVQTMATIGYGKL 102
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 365 ENSFFKSIPDAFWWAVVTMTTVGYGDM 391
EN+ S DAF+++V TM T+GYG +
Sbjct: 76 ENARPGSFTDAFFFSVQTMATIGYGKL 102
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
IL+ + A ++ ++ +F E +S + +W VT+ TVGYGD
Sbjct: 13 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGD 54
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
IL+ + A ++ ++ +F E +S + +W VT+ TVGYGD
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGD 47
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
IL+ + A ++ ++ +F E +S + +W VT+ TVGYGD
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGD 47
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
IL+ + A ++ ++ +F E +S + +W VT+ TVGYGD
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGD 47
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
++++ + L S T++++ + DA +++VVT+TTVG GD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPI-----DALYFSVVTLTTVGDGD 51
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
IL+ + A ++ ++ +F E +S + +W VT+ TVGYGD
Sbjct: 23 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGD 64
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
IL+ + A ++ ++ +F E +S + +W VT+ TVGYGD
Sbjct: 23 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGD 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,203,231
Number of Sequences: 62578
Number of extensions: 430552
Number of successful extensions: 1186
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 144
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)