Query psy11394
Match_columns 391
No_of_seqs 283 out of 2687
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:17:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1545|consensus 100.0 3E-80 6.4E-85 581.7 10.5 338 28-391 57-413 (507)
2 KOG3713|consensus 100.0 1.4E-74 3.1E-79 567.8 12.9 332 28-391 27-397 (477)
3 KOG4390|consensus 100.0 2.2E-61 4.8E-66 457.8 8.6 316 28-391 36-376 (632)
4 PF02214 BTB_2: BTB/POZ domain 99.9 2.3E-24 5.1E-29 173.5 4.0 91 34-124 1-93 (94)
5 KOG1419|consensus 99.9 2.9E-24 6.4E-29 212.9 -1.6 196 141-391 74-289 (654)
6 KOG2714|consensus 99.7 3E-18 6.4E-23 166.5 5.8 97 25-122 4-102 (465)
7 KOG2715|consensus 99.7 3E-18 6.5E-23 146.7 3.6 92 27-120 16-110 (210)
8 KOG1665|consensus 99.7 1.2E-16 2.6E-21 143.1 6.0 115 29-145 6-123 (302)
9 KOG2716|consensus 99.6 8.6E-17 1.9E-21 147.5 4.4 90 30-121 3-94 (230)
10 KOG3713|consensus 99.6 1.3E-16 2.9E-21 158.3 5.1 129 209-361 270-436 (477)
11 KOG2723|consensus 99.6 2.5E-16 5.3E-21 143.5 4.7 93 28-121 5-99 (221)
12 KOG1545|consensus 99.6 2E-15 4.3E-20 143.8 10.2 96 210-305 284-420 (507)
13 PLN03192 Voltage-dependent pot 99.4 1.8E-14 3.8E-19 157.8 1.7 179 152-391 53-270 (823)
14 KOG0498|consensus 99.0 9.8E-11 2.1E-15 123.7 2.2 197 152-391 69-314 (727)
15 PF00520 Ion_trans: Ion transp 99.0 1E-11 2.2E-16 111.2 -6.4 141 216-391 1-165 (200)
16 KOG1420|consensus 98.9 8.1E-11 1.7E-15 118.1 -1.3 138 208-391 158-308 (1103)
17 KOG4390|consensus 98.9 2.2E-10 4.8E-15 110.5 1.0 64 245-309 323-386 (632)
18 KOG2301|consensus 98.9 6.3E-11 1.4E-15 134.0 -4.4 190 139-388 1141-1342(1592)
19 KOG2302|consensus 98.7 3.3E-09 7.1E-14 111.9 -0.4 174 162-390 1441-1632(1956)
20 KOG4404|consensus 98.6 2.4E-08 5.2E-13 94.8 4.2 105 278-391 80-206 (350)
21 KOG1419|consensus 98.6 3.7E-09 8E-14 106.3 -1.6 94 248-365 234-332 (654)
22 KOG2302|consensus 98.6 1.1E-08 2.5E-13 107.9 1.7 145 161-357 1123-1278(1956)
23 KOG2301|consensus 98.6 5.9E-09 1.3E-13 118.3 -1.5 176 142-386 430-617 (1592)
24 KOG0501|consensus 98.5 5.6E-08 1.2E-12 98.3 3.8 136 213-391 250-443 (971)
25 KOG3840|consensus 98.4 4.3E-07 9.3E-12 85.6 4.8 92 28-120 92-187 (438)
26 PF07885 Ion_trans_2: Ion chan 98.3 2.2E-07 4.8E-12 72.0 0.8 40 349-391 5-44 (79)
27 KOG1418|consensus 98.2 1.5E-07 3.2E-12 94.6 -1.0 36 276-312 113-148 (433)
28 KOG0500|consensus 98.2 9.8E-07 2.1E-11 88.2 2.8 131 212-387 29-199 (536)
29 smart00225 BTB Broad-Complex, 98.0 5.7E-06 1.2E-10 63.8 3.3 84 34-120 2-85 (90)
30 PRK10537 voltage-gated potassi 97.9 5.4E-06 1.2E-10 83.4 3.3 43 348-391 145-188 (393)
31 PRK10537 voltage-gated potassi 97.1 0.00049 1.1E-08 69.4 4.6 40 274-314 164-203 (393)
32 KOG0499|consensus 96.7 0.0018 4E-08 66.5 5.0 131 212-388 261-420 (815)
33 PLN03223 Polycystin cation cha 96.7 0.00037 8E-09 77.4 -0.7 75 298-382 1298-1372(1634)
34 PF07885 Ion_trans_2: Ion chan 96.5 7.4E-05 1.6E-09 57.7 -5.2 35 276-311 22-56 (79)
35 PLN03192 Voltage-dependent pot 96.5 0.00072 1.6E-08 74.7 0.4 28 282-310 254-281 (823)
36 KOG1420|consensus 96.5 0.0037 7.9E-08 64.1 5.2 57 261-318 265-327 (1103)
37 KOG3193|consensus 96.1 0.0028 6.1E-08 64.5 1.8 53 337-391 185-237 (1087)
38 PF08016 PKD_channel: Polycyst 95.9 0.00068 1.5E-08 69.2 -3.7 129 235-377 239-372 (425)
39 PF01007 IRK: Inward rectifier 94.7 0.0085 1.8E-07 59.1 -0.1 23 368-390 81-103 (336)
40 KOG3599|consensus 93.7 0.022 4.8E-07 62.1 0.5 140 221-375 475-627 (798)
41 KOG1418|consensus 93.3 0.029 6.3E-07 56.2 0.7 22 370-391 114-135 (433)
42 TIGR00870 trp transient-recept 90.5 0.1 2.2E-06 57.1 1.0 23 235-257 418-440 (743)
43 KOG3614|consensus 89.9 0.37 8E-06 54.5 4.6 23 235-257 858-880 (1381)
44 PHA03098 kelch-like protein; P 86.7 0.54 1.2E-05 49.2 3.2 81 30-121 10-94 (534)
45 KOG3684|consensus 86.4 0.11 2.4E-06 52.3 -1.9 24 368-391 284-307 (489)
46 KOG4404|consensus 83.1 0.57 1.2E-05 45.4 1.2 26 278-303 186-211 (350)
47 KOG3827|consensus 74.6 0.88 1.9E-05 45.2 -0.3 56 335-390 61-131 (400)
48 PF00651 BTB: BTB/POZ domain; 69.1 4 8.7E-05 32.5 2.4 87 33-121 12-100 (111)
49 KOG3193|consensus 68.1 3.2 6.9E-05 43.0 2.0 27 278-304 217-243 (1087)
50 KOG3609|consensus 67.3 2.4 5.2E-05 46.1 1.0 45 213-257 382-435 (822)
51 KOG0498|consensus 65.7 1.1 2.4E-05 48.5 -1.9 25 280-304 296-320 (727)
52 PHA02790 Kelch-like protein; P 44.2 20 0.00043 37.2 3.1 76 36-120 26-108 (480)
53 PHA02713 hypothetical protein; 43.9 15 0.00032 39.0 2.2 80 33-121 27-112 (557)
54 KOG3684|consensus 42.4 3 6.5E-05 42.4 -3.1 35 276-311 285-319 (489)
55 PF01007 IRK: Inward rectifier 31.4 3.4 7.3E-05 41.0 -4.7 24 276-299 82-105 (336)
56 KOG0510|consensus 29.8 14 0.00031 40.3 -0.6 32 28-60 304-335 (929)
57 KOG3676|consensus 25.1 2.6E+02 0.0057 30.8 7.7 54 338-391 542-608 (782)
58 KOG4441|consensus 24.9 56 0.0012 34.8 2.7 80 33-120 38-122 (571)
59 COG1226 Kch Kef-type K+ transp 22.4 33 0.00071 29.7 0.3 23 369-391 115-137 (212)
No 1
>KOG1545|consensus
Probab=100.00 E-value=3e-80 Score=581.68 Aligned_cols=338 Identities=57% Similarity=0.940 Sum_probs=304.8
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDV 107 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~ 107 (391)
..+++||++||+|.||+|..+||.+||+|+||++.+|..++|+.++|||||||+.+|..||.|||+||++++|.+++.+.
T Consensus 57 ~~~~ervvINisGlRFeTql~TL~qfP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVPlDi 136 (507)
T KOG1545|consen 57 SCCCERVVINISGLRFETQLKTLAQFPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDI 136 (507)
T ss_pred cccccEEEEEeccceehHHHHHHhhCchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceecCCccccHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcchhcchhhhccccccccCCCCCchHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccc
Q psy11394 108 FSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEF 187 (391)
Q Consensus 108 ~~~E~~f~~l~~~~~e~~~~~e~~~~~~~~~~~~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~ 187 (391)
|.||.+||+|+++.+++++++|+..+++++++|.+.+||++|.++|.|+||.+|++++++++++|++|++++|+||+|++
T Consensus 137 F~eEirFyqlG~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPef 216 (507)
T KOG1545|consen 137 FLEEIRFYQLGDEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEF 216 (507)
T ss_pred HHHHHHHHHhhHHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc----c-----CCCcc---cccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy11394 188 KHYKVFNT----T-----TNGTK---IEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIYVHVLIP 248 (391)
Q Consensus 188 ~~~~~~~~----~-----~~~~~---~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~iiDll~i 248 (391)
+..+.... . .|.+. ........++++|+++|+.|++||++|+++|++ |+++.+|+||+++|
T Consensus 217 rderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI 296 (507)
T KOG1545|consen 217 RDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAI 296 (507)
T ss_pred hhhccccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 87532211 0 01111 111123357899999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhccc
Q psy11394 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLV 328 (391)
Q Consensus 249 lp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l 328 (391)
+|+++.++..+.+ +...+++ -..++-.|++++ +|.+|++ |||||.|+++++ | +|
T Consensus 297 ~PyFitlgtela~-------q~g~g~~---gqqaMSlAILRV-------iRLVRVF--RIFKLSRHSkGL-Q------IL 350 (507)
T KOG1545|consen 297 IPYFITLGTELAE-------QQGGGGQ---GQQAMSLAILRV-------IRLVRVF--RIFKLSRHSKGL-Q------IL 350 (507)
T ss_pred HHHHHHHhHHHHH-------hhcCCcc---chhhhhHHHHHH-------HHHHHHh--hheeeccccchH-H------HH
Confidence 9999999876642 2211111 124566788888 9999999 999999999999 9 99
Q ss_pred ccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 329 GKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 329 ~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
++++++|+++++++++++++++++|++.+|+.|.+.+.++|.+++||+|||+||||||||||+
T Consensus 351 GqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm 413 (507)
T KOG1545|consen 351 GQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDM 413 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG3713|consensus
Probab=100.00 E-value=1.4e-74 Score=567.84 Aligned_cols=332 Identities=33% Similarity=0.509 Sum_probs=277.9
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccCccC---------CccCCCCCCceeeecCCCCChHHHHhhhhcCCeee
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPAR---------RIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR 98 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~---------~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~ 98 (391)
+..+++|+|||||+||++.++||+++|.|+|+++.. .+++||+.++||||||||.+|.+||||||| ||||
T Consensus 27 ~~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrt-GkLH 105 (477)
T KOG3713|consen 27 GALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRT-GKLH 105 (477)
T ss_pred CCcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhc-Ceec
Confidence 456679999999999999999999999999997643 278999999999999999999999999999 8999
Q ss_pred cCCCCCHHhHHHHHhcCCCcchhcchh--------hhcc--cccc----c---------cCCCCCchHHHHHHHHHhccC
Q psy11394 99 RPVNVPLDVFSEEIKFYELGDVATNKF--------REDE--GFIK----E---------EEKPLPSHEFQRKVWLLFEYP 155 (391)
Q Consensus 99 ~p~~~~~~~~~~E~~f~~l~~~~~e~~--------~~~e--~~~~----~---------~~~~~~~~~~r~~i~~~le~P 155 (391)
+|.++|...|.||++||||++.+++.+ +++. .... + +....++.++|+|+|+++|+|
T Consensus 106 ~p~~vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~~ee~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~rlW~~~E~P 185 (477)
T KOG3713|consen 106 VPADVCPLSFEEELDYWGIDEAHLESCCWMRYRQRREELLEELDRPDPDEEELREREGPEFDGGRCGRLRRRLWALLENP 185 (477)
T ss_pred cccccchHHHHHHHHHhCCChhhhhHHhHHHHhhcHHHHhhhhcccCchhhhHHhhccccccCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999887633 1110 0000 0 011345678999999999999
Q ss_pred CCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-
Q psy11394 156 ESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL- 234 (391)
Q Consensus 156 ~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~- 234 (391)
.||.+||+|+++|+++|++|++.+|+.|+|++|.....+.+... ............+.++|.+|++|||+||++|++
T Consensus 186 ~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~--~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~ 263 (477)
T KOG3713|consen 186 GSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLV--NVEKIESEPHPILTYVETVCIAWFTFEYLLRFLV 263 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccc--cccccCCCCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999974322111000 111123345567889999999999999999999
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccccee
Q psy11394 235 ------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGV 308 (391)
Q Consensus 235 ------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ri 308 (391)
|+|+++||||+++|+|+|+++++...+. |. ...+... ..++++ +|.+|++ ||
T Consensus 264 ~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~-----~~---~~~l~~~-----~~vvrv-------lR~lRI~--RI 321 (477)
T KOG3713|consen 264 APNKLEFFKSPLNIIDLLAILPFYLELLLTLFGG-----ES---LKELENA-----GLVVRV-------LRVLRIL--RI 321 (477)
T ss_pred CchHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc-----ch---HHHHhhh-----hhhHHH-------HHHHHHH--HH
Confidence 9999999999999999999998766432 11 1111111 125566 8888999 99
Q ss_pred eeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhccccc
Q psy11394 309 FCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY 388 (391)
Q Consensus 309 lkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGY 388 (391)
+||.|++.|| | .|+.+++++.++++++++++.+++++||.++|++|++.++++|+|+|.++|||+||||||||
T Consensus 322 ~KLaRhS~GL-r------~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGY 394 (477)
T KOG3713|consen 322 FKLARHSTGL-R------TLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGY 394 (477)
T ss_pred HHHHhhhHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecc
Confidence 9999999999 9 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy11394 389 GDM 391 (391)
Q Consensus 389 GDi 391 (391)
||+
T Consensus 395 GDm 397 (477)
T KOG3713|consen 395 GDM 397 (477)
T ss_pred cCc
Confidence 997
No 3
>KOG4390|consensus
Probab=100.00 E-value=2.2e-61 Score=457.76 Aligned_cols=316 Identities=31% Similarity=0.508 Sum_probs=268.0
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDV 107 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~ 107 (391)
.+.++.++|||+|+||+|++.||.|||+|+||+-.+ .-+||++++||||||||++|+|||||||| ||||.|...|+..
T Consensus 36 ~r~De~lvlNvSGrRFeTWknTLeryPdTLLGSsEk-eFFy~~dt~eYFFDRDPdiFRhvLnFYRT-GkLHyPR~ECi~A 113 (632)
T KOG4390|consen 36 KRQDELLVLNVSGRRFETWKNTLERYPDTLLGSSEK-EFFYDEDTGEYFFDRDPDIFRHVLNFYRT-GKLHYPRHECISA 113 (632)
T ss_pred hccCcEEEEeccccchhHHHhHHHhCchhhhCCcch-heeecCCcccccccCChHHHHHHHHHhhc-CcccCchHHHHHH
Confidence 457889999999999999999999999999998543 35899999999999999999999999999 8999999999999
Q ss_pred HHHHHhcCCCcchhc-----chhhhcc-----cccccc------CCCCC-chHHHHHHHHHhccCCCChhhhhhheeehh
Q psy11394 108 FSEEIKFYELGDVAT-----NKFREDE-----GFIKEE------EKPLP-SHEFQRKVWLLFEYPESSQAARVVAIISVF 170 (391)
Q Consensus 108 ~~~E~~f~~l~~~~~-----e~~~~~e-----~~~~~~------~~~~~-~~~~r~~i~~~le~P~ss~~a~~~~~~~~~ 170 (391)
+-||+.||||-++.+ |+|++.. +.++++ +..+| ...+|+++|+.+|||++|..|.+|..+..+
T Consensus 114 yDeELaF~Gl~PeligDCCyEeYkDrkrENaERL~dd~~~e~ag~~~~p~~ls~rq~mWrAFENPHTst~ALVFYYVtGF 193 (632)
T KOG4390|consen 114 YDEELAFYGLVPELIGDCCYEEYKDRKRENAERLQDDEDAENAGGPALPAGLSLRQRMWRAFENPHTSTAALVFYYVTGF 193 (632)
T ss_pred hhhhhhHhcccHHHHhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCCCcccchHHHHHHHHhcCCCcchhhhhhhhhhhh
Confidence 999999999988754 3343221 112111 12233 378999999999999999999999999999
Q ss_pred HHHhhhhhheeecCccccccccccccCCCccccc-CCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHH
Q psy11394 171 VILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEE-DEVPDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIY 242 (391)
Q Consensus 171 ~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~i 242 (391)
+|.+|+++-++||+|.-... + ++.+ .+-..+...|+.+|+.|+++||.||++|++ |+++.+.+
T Consensus 194 FIAVSVi~NvVETiPCg~~~--------~-~~~e~pCGEry~~aFFclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSi 264 (632)
T KOG4390|consen 194 FIAVSVIANVVETIPCGGSP--------G-RSKELPCGERYPVAFFCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSI 264 (632)
T ss_pred hhhhhhhhceeeecccCCCC--------C-CceecccccccceeeEEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHH
Confidence 99999999999999864431 0 0111 112246678999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHh
Q psy11394 243 VHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEY 322 (391)
Q Consensus 243 iDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~ 322 (391)
||+++|+|+|+++++.- ++. .. -+.+| +|.+|++ ||||..|+..++ +
T Consensus 265 IDVvAIlPYYigLv~t~---------N~D-------VS----GaFVT--------LRVFRVF--RIFKFSRHSQGL-R-- 311 (632)
T KOG4390|consen 265 IDVVAILPYYIGLVMTD---------NED-------VS----GAFVT--------LRVFRVF--RIFKFSRHSQGL-R-- 311 (632)
T ss_pred HHHhhhhhhheEEEecC---------Ccc-------cc----ceeEE--------EEeeeee--eeeeeccccccc-c--
Confidence 99999999998875311 111 11 12344 5899999 999999999999 9
Q ss_pred hhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 323 SRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 323 ~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+|+.+++....+++.+++.+.+++++|+.+||+.|.+...++|++++.|+|+++|||||.||||+
T Consensus 312 ----ILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDM 376 (632)
T KOG4390|consen 312 ----ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDM 376 (632)
T ss_pred ----hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999996
No 4
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.89 E-value=2.3e-24 Score=173.49 Aligned_cols=91 Identities=35% Similarity=0.593 Sum_probs=77.8
Q ss_pred EEEEeCCeeeeecHHHhccCCCccccCccCC--ccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHH
Q psy11394 34 VVINVSGLRFETQLRTLNQFPETLLGDPARR--IRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE 111 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~--~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E 111 (391)
|+|||||++|+|+++||.++|+|+|+++.+. .+.+++++++|||||||++|++||||||+||+++.|++.+...+.+|
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~E 80 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEE 80 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHH
Confidence 7899999999999999999999999998654 46788889999999999999999999999778999989999999999
Q ss_pred HhcCCCcchhcch
Q psy11394 112 IKFYELGDVATNK 124 (391)
Q Consensus 112 ~~f~~l~~~~~e~ 124 (391)
|+||+|.+..++.
T Consensus 81 a~fy~l~~l~i~~ 93 (94)
T PF02214_consen 81 AEFYGLDELFIED 93 (94)
T ss_dssp HHHHT-HHHHBHH
T ss_pred HHHcCCCccccCC
Confidence 9999999886654
No 5
>KOG1419|consensus
Probab=99.88 E-value=2.9e-24 Score=212.90 Aligned_cols=196 Identities=21% Similarity=0.340 Sum_probs=156.0
Q ss_pred chHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhh
Q psy11394 141 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETF 220 (391)
Q Consensus 141 ~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v 220 (391)
-+++|.++|++||.|...+ +..+++++.++++.+++.-++.|.++.+. .....++++|++
T Consensus 74 ~Rr~q~~vYN~LERPrGWk-af~YH~~VFllVl~CLILsV~STi~e~~~-------------------~a~~~L~~LEiv 133 (654)
T KOG1419|consen 74 YRRIQNKVYNFLERPRGWK-AFLYHFFVFLLVLSCLILSVLSTIEEYEK-------------------LASGILYILEIV 133 (654)
T ss_pred HHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHhcccHHHHH-------------------HHHHHHHHHHHH
Confidence 4678889999999997432 45677777777777777788999887765 245678999999
Q ss_pred hhhhHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccce
Q psy11394 221 LIMPSLYCLLTSLL----------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFW 284 (391)
Q Consensus 221 ~~~~F~~E~llRl~----------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w 284 (391)
.++||.+||++|+| |.+++..+||+++++.... .+..+.+.+.|.+.
T Consensus 134 ~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~------------vl~~g~qG~vfatS----- 196 (654)
T KOG1419|consen 134 MIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIA------------VLAAGSQGNVFATS----- 196 (654)
T ss_pred HHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeee------------EEEecCccceeehh-----
Confidence 99999999999999 8899999999987665422 12223444444321
Q ss_pred eeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCC
Q psy11394 285 WAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGS 364 (391)
Q Consensus 285 ~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~ 364 (391)
..+-+|.+.++ |++|.-|....+ + .|+.++.....+|....++-+++.+..+.++|..|.+.
T Consensus 197 ---------alrslRFlQIL--Rmlr~DRrggTW-K------LLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~ 258 (654)
T KOG1419|consen 197 ---------ALRSLRFLQIL--RMLRMDRRGGTW-K------LLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDA 258 (654)
T ss_pred ---------hhhhhHHHHHH--HHHHhhccCchh-h------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 11227888888 999999988777 8 88988888899999999998888888899999999874
Q ss_pred C----CCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 365 E----NSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 365 ~----~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+ +..|.+|.||+||.++|+|||||||+
T Consensus 259 ~~e~~n~~F~TyADALWWG~ITltTIGYGDk 289 (654)
T KOG1419|consen 259 QGEGTNDEFPTYADALWWGVITLTTIGYGDK 289 (654)
T ss_pred ccccccccchhHHHHHHhhheeEEeeccCCc
Confidence 3 45899999999999999999999995
No 6
>KOG2714|consensus
Probab=99.73 E-value=3e-18 Score=166.46 Aligned_cols=97 Identities=28% Similarity=0.417 Sum_probs=83.5
Q ss_pred CCCCCCCceEEEEeCCeeeeecHHHhccCC-CccccCcc-CCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCC
Q psy11394 25 PHDHDFCERVVINVSGLRFETQLRTLNQFP-ETLLGDPA-RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVN 102 (391)
Q Consensus 25 ~~~~~~~~~v~lNVgG~~f~t~~~tl~~~p-~t~l~~~~-~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~ 102 (391)
+..+.++++|+|||||++|+|+++||...| +|+++.+. .+-....++.+.+||||||++|..||||||| |.|..+..
T Consensus 4 ~~~~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRT-g~L~~~g~ 82 (465)
T KOG2714|consen 4 PAMGSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRT-GDLDASGV 82 (465)
T ss_pred cccCCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhc-CCCCCccC
Confidence 344567899999999999999999999998 99998874 3445567788899999999999999999999 89988766
Q ss_pred CCHHhHHHHHhcCCCcchhc
Q psy11394 103 VPLDVFSEEIKFYELGDVAT 122 (391)
Q Consensus 103 ~~~~~~~~E~~f~~l~~~~~ 122 (391)
...+.+.+||.||||.+...
T Consensus 83 ~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 83 FPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred chhhhhhhhhhhcCcHHHHH
Confidence 67777777999999988654
No 7
>KOG2715|consensus
Probab=99.71 E-value=3e-18 Score=146.69 Aligned_cols=92 Identities=25% Similarity=0.304 Sum_probs=81.3
Q ss_pred CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCc---cCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCC
Q psy11394 27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI---RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 103 (391)
Q Consensus 27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~---~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~ 103 (391)
..+.+..|+|||||+.|.|+++||.|.|.+++.+++++. +.-.++++.|+|||||..|..||||+|. |||.+.. +
T Consensus 16 ~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRh-gklvl~~-l 93 (210)
T KOG2715|consen 16 GNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRH-GKLVLNK-L 93 (210)
T ss_pred CCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhc-chhhhhh-h
Confidence 344578999999999999999999999999999887654 3456788999999999999999999999 8998766 8
Q ss_pred CHHhHHHHHhcCCCcch
Q psy11394 104 PLDVFSEEIKFYELGDV 120 (391)
Q Consensus 104 ~~~~~~~E~~f~~l~~~ 120 (391)
..+..++||+||+++..
T Consensus 94 ~eeGvL~EAefyn~~~l 110 (210)
T KOG2715|consen 94 SEEGVLEEAEFYNDPSL 110 (210)
T ss_pred hhhccchhhhccCChHH
Confidence 88889999999999875
No 8
>KOG1665|consensus
Probab=99.65 E-value=1.2e-16 Score=143.10 Aligned_cols=115 Identities=21% Similarity=0.375 Sum_probs=87.4
Q ss_pred CCCceEEEEeCCeeeeecHHHh-ccCCCccccCccC-C-ccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCH
Q psy11394 29 DFCERVVINVSGLRFETQLRTL-NQFPETLLGDPAR-R-IRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPL 105 (391)
Q Consensus 29 ~~~~~v~lNVgG~~f~t~~~tl-~~~p~t~l~~~~~-~-~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~ 105 (391)
..+..|+|||||++|+|+.+|| -|.|+|||..+.. + ..-..++++.|+|||+|+.|++||||+|. |.+.+-.++..
T Consensus 6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~-Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRD-GQIPSLSDIDC 84 (302)
T ss_pred ChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhc-CceeecCCccH
Confidence 3456899999999999999999 7889999988753 2 22345678899999999999999999999 89988888888
Q ss_pred HhHHHHHhcCCCcchhcchhhhccccccccCCCCCchHHH
Q psy11394 106 DVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQ 145 (391)
Q Consensus 106 ~~~~~E~~f~~l~~~~~e~~~~~e~~~~~~~~~~~~~~~r 145 (391)
..++||++||+|-... +...+...+..+.+.|.++..+-
T Consensus 85 lgvLeeArff~i~sL~-~hle~~~~e~pe~~~pltR~dii 123 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLK-DHLEDSRKEVPEVEAPLTRIDII 123 (302)
T ss_pred HHHHHHhhHHhhHhHH-hHHhhhccCCCcCCCCccHHHHH
Confidence 8899999999996532 22222222334444555554433
No 9
>KOG2716|consensus
Probab=99.64 E-value=8.6e-17 Score=147.51 Aligned_cols=90 Identities=28% Similarity=0.421 Sum_probs=75.8
Q ss_pred CCceEEEEeCCeeeeecHHHhccCCCccccCcc-CCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCC-CHHh
Q psy11394 30 FCERVVINVSGLRFETQLRTLNQFPETLLGDPA-RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV-PLDV 107 (391)
Q Consensus 30 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~-~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~-~~~~ 107 (391)
.++.|+|||||+.|.|+++||+++ ++++..+. .+.+...++.+++||||+|++|..||||+|. |.+.+|++. ....
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk~-dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRd-Gdv~LPe~~kel~E 80 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTKF-DGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRD-GDVDLPESEKELKE 80 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhhh-hhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhc-ccccCccchHHHHH
Confidence 457899999999999999999995 56665442 3333456678899999999999999999999 788899887 7788
Q ss_pred HHHHHhcCCCcchh
Q psy11394 108 FSEEIKFYELGDVA 121 (391)
Q Consensus 108 ~~~E~~f~~l~~~~ 121 (391)
+++||+||.|+...
T Consensus 81 l~~EA~fYlL~~Lv 94 (230)
T KOG2716|consen 81 LLREAEFYLLDGLV 94 (230)
T ss_pred HHHHHHHhhHHHHH
Confidence 99999999998865
No 10
>KOG3713|consensus
Probab=99.64 E-value=1.3e-16 Score=158.26 Aligned_cols=129 Identities=33% Similarity=0.550 Sum_probs=95.7
Q ss_pred CCCChhHhhhhhhhhhHHHHHHHHHHH------HH---------HH---------------H--------HHHHHHHHHH
Q psy11394 209 DITDPFFLIETFLIMPSLYCLLTSLLL------YS---------VV---------------M--------IYVHVLIPIL 250 (391)
Q Consensus 209 ~~~~~~~~ie~v~~~~F~~E~llRl~f------~~---------~~---------------~--------~iiDll~ilp 250 (391)
...+++++||++.+++|.+|.++-..- .. +. + .-.--+..+.
T Consensus 270 F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLl 349 (477)
T KOG3713|consen 270 FFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLL 349 (477)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999997654330 00 00 0 1112245667
Q ss_pred HHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhccccc
Q psy11394 251 MYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGK 330 (391)
Q Consensus 251 ~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~ 330 (391)
.++.+++.++|+++|++|++.+++.|+|||.++|||++|||||||||++|.|..| ++.-
T Consensus 350 lfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~G-klva-------------------- 408 (477)
T KOG3713|consen 350 LFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLG-KLVA-------------------- 408 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccch-HHHH--------------------
Confidence 7778888899999999999999999999999999999999999999999999997 2222
Q ss_pred ccCccchhhhhhhhhhhhhhhcccceeeeec
Q psy11394 331 SIPDAFWWAVVTMTTVGYGVVLFSSAVYFAE 361 (391)
Q Consensus 331 ~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E 361 (391)
......+++.+.+.+-+++-.+..|+-+
T Consensus 409 ---s~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 409 ---SLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred ---HHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 1223335566777777777666666653
No 11
>KOG2723|consensus
Probab=99.62 E-value=2.5e-16 Score=143.51 Aligned_cols=93 Identities=25% Similarity=0.483 Sum_probs=82.9
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccCccC-CccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCC-CH
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPAR-RIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV-PL 105 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~-~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~-~~ 105 (391)
....+.++|||||..|.|+.+||.++|+|+|+++.+ .....++..+-||||||+..|++||||+|+ .++..|++. ..
T Consensus 5 ~~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt-~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 5 SEYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRT-KALLLPEDFAEV 83 (221)
T ss_pred cccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcc-cccccchhhhhH
Confidence 345689999999999999999999999999998866 555667788899999999999999999999 788999888 68
Q ss_pred HhHHHHHhcCCCcchh
Q psy11394 106 DVFSEEIKFYELGDVA 121 (391)
Q Consensus 106 ~~~~~E~~f~~l~~~~ 121 (391)
+.+.+||+||+++...
T Consensus 84 ~~L~rEA~f~~l~~~~ 99 (221)
T KOG2723|consen 84 ERLVREAEFFQLEAPV 99 (221)
T ss_pred HHHHHHHHHHccccHH
Confidence 8999999999999644
No 12
>KOG1545|consensus
Probab=99.61 E-value=2e-15 Score=143.78 Aligned_cols=96 Identities=43% Similarity=0.689 Sum_probs=76.3
Q ss_pred CCChhHhhhhhhhhhHHHHHH---------------------HHHH--------H--HH--HHHH--------HHHHHHH
Q psy11394 210 ITDPFFLIETFLIMPSLYCLL---------------------TSLL--------L--YS--VVMI--------YVHVLIP 248 (391)
Q Consensus 210 ~~~~~~~ie~v~~~~F~~E~l---------------------lRl~--------f--~~--~~~~--------iiDll~i 248 (391)
+++.+++||++.++.+.+-+. +|.+ | .+ +.+. -+--+.+
T Consensus 284 f~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgL 363 (507)
T KOG1545|consen 284 FRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGL 363 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHH
Confidence 457889999999988876552 3332 0 00 1122 2234567
Q ss_pred HHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 249 lp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
+-+++.++++++|+.+|++|.+.++++|+|||++|||+++|||||||||++|+++.|
T Consensus 364 LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgG 420 (507)
T KOG1545|consen 364 LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGG 420 (507)
T ss_pred HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCc
Confidence 777888888899999999999999999999999999999999999999999999986
No 13
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.45 E-value=1.8e-14 Score=157.81 Aligned_cols=179 Identities=15% Similarity=0.214 Sum_probs=106.2
Q ss_pred hccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHH
Q psy11394 152 FEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLT 231 (391)
Q Consensus 152 le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~ll 231 (391)
.-+|.++.. ++++.+++++++.+++..-++.. +.. ......+.++|.++.++|.+|+++
T Consensus 53 ii~P~~~~~-~~Wd~~~~~~~~y~~~~~p~~~~--F~~------------------~~~~~~~~~~d~i~~~~F~iDi~l 111 (823)
T PLN03192 53 IISPMDSRY-RWWETLMVVLVAYSAWVYPFEVA--FLN------------------ASPKRGLEIADNVVDLFFAVDIVL 111 (823)
T ss_pred EECCCCcHH-HHHHHHHHHHHHHHHHHHHHHHH--eeC------------------CCCCCCeeeHHHHHHHHHHHHHHh
Confidence 456764443 67888888888888777655432 111 011224678999999999999999
Q ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEE
Q psy11394 232 SLL---------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTM 290 (391)
Q Consensus 232 Rl~---------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~ 290 (391)
||+ |++. |.++|+++++|+.+...+... ......
T Consensus 112 ~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~-----------------~~~~~~------- 166 (823)
T PLN03192 112 TFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITG-----------------TVKLNL------- 166 (823)
T ss_pred heeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcC-----------------CccchH-------
Confidence 986 5544 789999999999755422100 000000
Q ss_pred EEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCcc--chhhhhhhhhhhhhhhcccceeeeeccCC---C
Q psy11394 291 TTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDA--FWWAVVTMTTVGYGVVLFSSAVYFAEAGS---E 365 (391)
Q Consensus 291 TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s--~~~l~~~~~~l~i~i~~~a~~~y~~E~~~---~ 365 (391)
. .+.++++ |++|+.|..+.+ + .+.+.+..+ ...+..+++++++++.++||++|.+.... +
T Consensus 167 ---~---~~~l~ll--rl~Rl~ri~~~~-~------~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~ 231 (823)
T PLN03192 167 ---S---YSLLGLL--RFWRLRRVKQLF-T------RLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQG 231 (823)
T ss_pred ---H---HHHHHHH--HHHHHHHHHHHH-H------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 0 2233444 444444443333 3 122112111 12334445556667788888888765321 1
Q ss_pred CC-------------CCCCcchhhhhhhhhhcccccCCC
Q psy11394 366 NS-------------FFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 366 ~~-------------~f~s~~~alywaivT~tTVGYGDi 391 (391)
.+ .+..|..|+||+++|||||||||+
T Consensus 232 ~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi 270 (823)
T PLN03192 232 KTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDL 270 (823)
T ss_pred CchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCc
Confidence 11 122367799999999999999996
No 14
>KOG0498|consensus
Probab=99.01 E-value=9.8e-11 Score=123.73 Aligned_cols=197 Identities=14% Similarity=0.110 Sum_probs=113.4
Q ss_pred hccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHH
Q psy11394 152 FEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLT 231 (391)
Q Consensus 152 le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~ll 231 (391)
.-+|. |+.-+.++.+++++.+.++++-=++-.-.... +...+ .+.....++.+++++..++|.+++++
T Consensus 69 Ii~P~-s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~--------~~~~~---~d~~~~~~l~v~d~ivD~fflvdIvL 136 (727)
T KOG0498|consen 69 ILDPY-SPFYRVWNKFFLLLVIYAAFVDPLFFYFLLID--------DERKC---IDGKLAAPLTVLDTIVDIFFLVDIVL 136 (727)
T ss_pred eECCC-ChHHHHHHHHHHHHHHHHHHhccceeeEEecc--------ccccc---ccccccCceeeHHHHHHHHHHHHHHH
Confidence 34665 44556677777776666655432222110000 00011 22345677889999999999999999
Q ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEE
Q psy11394 232 SLL---------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTM 290 (391)
Q Consensus 232 Rl~---------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~ 290 (391)
+|. |++ .|.+||+++++|+-..++... ..... ...-
T Consensus 137 ~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~~~i~~~~~-------~~~~~---------------~~~~ 193 (727)
T KOG0498|consen 137 NFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPFDQIVVLVV-------IGSTS---------------LALE 193 (727)
T ss_pred hheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcChhhheeeee-------ecccc---------------hhhh
Confidence 986 666 589999999999765442110 00000 0111
Q ss_pred EEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCC-----
Q psy11394 291 TTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSE----- 365 (391)
Q Consensus 291 TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~----- 365 (391)
++.+++-+...|+. |+.|+.+..+.+ .++ .+......+...+..+++.+++..+.|++.|.+-...+
T Consensus 194 ~~~l~~il~~~rL~--Rl~Rv~~l~~r~-~k~-----~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~ 265 (727)
T KOG0498|consen 194 STILVGILLLQRLP--RLRRVIPLFARL-EKD-----TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPR 265 (727)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH-HHH-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 12233335555555 555655555555 311 11111112233446667777778899999998732111
Q ss_pred ----CC---------C----CC------CcchhhhhhhhhhcccccCCC
Q psy11394 366 ----NS---------F----FK------SIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 366 ----~~---------~----f~------s~~~alywaivT~tTVGYGDi 391 (391)
.. + |. .|..|+||++.|||||||||.
T Consensus 266 ~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~ 314 (727)
T KOG0498|consen 266 KATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV 314 (727)
T ss_pred ccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc
Confidence 00 1 22 267899999999999999985
No 15
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.96 E-value=1e-11 Score=111.17 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=94.1
Q ss_pred hhhhhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeE
Q psy11394 216 LIETFLIMPSLYCLLTSLL--------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAV 287 (391)
Q Consensus 216 ~ie~v~~~~F~~E~llRl~--------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~i 287 (391)
++|.++.++|++|.++|++ |++++||++|+++++|..+..+..... ..+. .. .
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~----------~~~~------~~---~ 61 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYG----------SASA------QS---L 61 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS------------HH------CH---C
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccc----------cccc------cc---e
Confidence 5799999999999999998 677899999999999997666422110 0000 00 0
Q ss_pred EEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCC---
Q psy11394 288 VTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGS--- 364 (391)
Q Consensus 288 it~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~--- 364 (391)
.++ .+.+|.+ |++|+.|..+.+ + .+..++....+.+......++++++.++++.+.+-++.
T Consensus 62 ~~~-------~~~l~~~--R~l~~~~~~~~~-~------~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~ 125 (200)
T PF00520_consen 62 LRI-------FRLLRLL--RLLRLLRRFRSL-R------RLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNS 125 (200)
T ss_dssp HHH-------HHHHHHH--HHHHHHHTTTSH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS--
T ss_pred EEE-------EEeeccc--cccccccccccc-c------ccccccccccccccccccccccccccccchhheeccccccc
Confidence 011 4444445 555555555545 3 44444555666666666666666677777666553222
Q ss_pred -------------CCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 365 -------------ENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 365 -------------~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+..+|++++.|+||++.++||.||||+
T Consensus 126 ~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~ 165 (200)
T PF00520_consen 126 CCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDV 165 (200)
T ss_dssp -----SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCC
T ss_pred ccccccccccccccccccccccccccccccccccCCcccc
Confidence 235778999999999999999999985
No 16
>KOG1420|consensus
Probab=98.95 E-value=8.1e-11 Score=118.14 Aligned_cols=138 Identities=15% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCccccc
Q psy11394 208 PDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIP 280 (391)
Q Consensus 208 ~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~ 280 (391)
++..+.-..||..+.++|.+-+.+||+ |+...+.++|+..+.|.++.+ |. .
T Consensus 158 ~w~~~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsi---------yl-~------------ 215 (1103)
T KOG1420|consen 158 NWYKDFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSI---------YL-N------------ 215 (1103)
T ss_pred hhhhChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEE---------Ee-c------------
Confidence 345555678999999999999999998 777888999999999987543 21 1
Q ss_pred ccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeee
Q psy11394 281 DAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFA 360 (391)
Q Consensus 281 ~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~ 360 (391)
-.| +| +|.+|.+ |++.+-.....+ + .+. + ..+ ..+..++.+..-..+..++++..+
T Consensus 216 -r~w--------lg---lrflral--rlmtvpdilqyl-n------ilk-t-sss-irl~qlvsifisvwltaag~ihll 271 (1103)
T KOG1420|consen 216 -RSW--------LG---LRFLRAL--RLMTVPDILQYL-N------ILK-T-SSS-IRLVQLVSIFISVWLTAAGFIHLL 271 (1103)
T ss_pred -cch--------HH---HHHHHHH--HhccHHHHHHHH-H------HHh-c-cch-hhHHHHHHHHHHHHHhhcceeehh
Confidence 112 22 4555555 555544443333 3 221 1 122 233333333333345567788888
Q ss_pred ccCC-CCCCC-----CCcchhhhhhhhhhcccccCCC
Q psy11394 361 EAGS-ENSFF-----KSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 361 E~~~-~~~~f-----~s~~~alywaivT~tTVGYGDi 391 (391)
|... +.++| -+|.++.|+.+|||+||||||+
T Consensus 272 ensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdv 308 (1103)
T KOG1420|consen 272 ENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDV 308 (1103)
T ss_pred hcCCChhHhccCcccchhhheeeeeEEEeeeccccce
Confidence 8643 33344 4689999999999999999996
No 17
>KOG4390|consensus
Probab=98.93 E-value=2.2e-10 Score=110.52 Aligned_cols=64 Identities=39% Similarity=0.759 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394 245 VLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309 (391)
Q Consensus 245 ll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril 309 (391)
-+-.+.+.+.+.++++.+.+||+|+++..++|+|||.+||+.|+||||+||||+.|.++.| +|+
T Consensus 323 ELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaG-KIf 386 (632)
T KOG4390|consen 323 ELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAG-KIF 386 (632)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHH-HHh
Confidence 3455666777778888899999999999999999999999999999999999999999997 443
No 18
>KOG2301|consensus
Probab=98.90 E-value=6.3e-11 Score=133.96 Aligned_cols=190 Identities=11% Similarity=0.117 Sum_probs=140.9
Q ss_pred CCchHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhh
Q psy11394 139 LPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIE 218 (391)
Q Consensus 139 ~~~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie 218 (391)
.+.++.|.++|++...+ .|+++++++|+++.+.++++++++... +..++.++.
T Consensus 1141 r~~~~~q~~~~~~v~~~-------~F~~~i~~li~ln~i~l~~~~~~qs~~--------------------~~~~l~~in 1193 (1592)
T KOG2301|consen 1141 RPRNKLQGLVFDLVTSQ-------AFDYLIMLLIFLNTIIMMVETYDQSDT--------------------YTAILTILN 1193 (1592)
T ss_pred CCcchhhhHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhhccchHH--------------------HHHHHHHHH
Confidence 34566999999999753 399999999999999999999876554 445788999
Q ss_pred hhhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEE
Q psy11394 219 TFLIMPSLYCLLTSLL------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTT 292 (391)
Q Consensus 219 ~v~~~~F~~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TT 292 (391)
.+++.+|++|.++|++ |++++||++|++.++..++..++...-.. +.+-+ ...++
T Consensus 1194 ~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~------------~~~~~-----~~~~~-- 1254 (1592)
T KOG2301|consen 1194 AVFIVLFTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK------------YESSP-----TLLRF-- 1254 (1592)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh------------hccch-----hhHHH--
Confidence 9999999999999998 89999999999998888887766443110 00001 12233
Q ss_pred eecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeee------ccCCCC
Q psy11394 293 VGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFA------EAGSEN 366 (391)
Q Consensus 293 vGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~------E~~~~~ 366 (391)
.|.+|++ |++|+++..+++ + .|..++..|.+.+..+.+.++++++++|.+...+ +.-...
T Consensus 1255 -----~rl~rV~--R~l~Li~~~~~i-r------~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~ 1320 (1592)
T KOG2301|consen 1255 -----LRLFRVG--RFLRLIPQAKTI-R------TLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLGGINDH 1320 (1592)
T ss_pred -----HHHHHHH--HHHHhccccchh-H------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheeccccCCC
Confidence 7888998 999999999999 8 8888888898888766666666666655533322 212245
Q ss_pred CCCCCcchhhhhhhhhhccccc
Q psy11394 367 SFFKSIPDAFWWAVVTMTTVGY 388 (391)
Q Consensus 367 ~~f~s~~~alywaivT~tTVGY 388 (391)
.||.+++.|+=--+...|.-|+
T Consensus 1321 ~NF~tf~~a~i~LFr~~Tge~W 1342 (1592)
T KOG2301|consen 1321 NNFRTFPNSMVVLFRCATGEGW 1342 (1592)
T ss_pred cccccchhheeeeeehhhhhhH
Confidence 6899999987654444444444
No 19
>KOG2302|consensus
Probab=98.67 E-value=3.3e-09 Score=111.90 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=125.7
Q ss_pred hhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH------H
Q psy11394 162 RVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------L 235 (391)
Q Consensus 162 ~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~------f 235 (391)
.....++.++|.++++.+..|.+.+.+. +..++.+-++.+.+.|..|.+++++ |
T Consensus 1441 hyld~fit~ii~LnvVtms~ehyqqp~s--------------------ldealkycny~ft~vfV~EaV~klvafG~rrF 1500 (1956)
T KOG2302|consen 1441 HYLDQFITFIICLNVVTMSEEHYQQPTS--------------------LDEALKYCNYRFTAVFVLEAVLKLVAFGERRF 1500 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc--------------------HHHHhhhcceeeeehhHHHHHHHHHHHhHHHH
Confidence 4577889999999999999998765543 5567788899999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHH
Q psy11394 236 YSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR 315 (391)
Q Consensus 236 ~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~ 315 (391)
+++.||-+|+.+++...+++-+.- -.-+....-.| .|+++ +|.+|+. |++||+++.
T Consensus 1501 fkdrwnqldlaivlls~mgitlee----------ie~naalpinp-----tiiri-------mrvlria--rvlkllkma 1556 (1956)
T KOG2302|consen 1501 FKDRWNQLDLAIVLLSVMGITLEE----------IEINAALPINP-----TIIRI-------MRVLRIA--RVLKLLKMA 1556 (1956)
T ss_pred HhhhhhhhhHHHHHHHHhcccHhh----------eeecccCCCCh-----HHHHH-------HHHHHHH--HHHHHHHHH
Confidence 999999999999888877664321 11111111112 25566 8888888 999999999
Q ss_pred HHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeee----eccCCC--------CCCCCCcchhhhhhhhhh
Q psy11394 316 KFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYF----AEAGSE--------NSFFKSIPDAFWWAVVTM 383 (391)
Q Consensus 316 ~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~----~E~~~~--------~~~f~s~~~alywaivT~ 383 (391)
.++ + .+..++.+..++++.+.++.+++.++++.+..- +|.+.. ...|.+|+. |+.|+
T Consensus 1557 tgm-r------alldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgm----afltl 1625 (1956)
T KOG2302|consen 1557 TGM-R------ALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGM----AFLTL 1625 (1956)
T ss_pred HHH-H------HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhch----Hhhhh
Confidence 999 8 888888888888776655555555555544322 233221 236666665 56788
Q ss_pred cccccCC
Q psy11394 384 TTVGYGD 390 (391)
Q Consensus 384 tTVGYGD 390 (391)
..|..||
T Consensus 1626 frvstgd 1632 (1956)
T KOG2302|consen 1626 FRVSTGD 1632 (1956)
T ss_pred eeeccCC
Confidence 8888887
No 20
>KOG4404|consensus
Probab=98.63 E-value=2.4e-08 Score=94.84 Aligned_cols=105 Identities=26% Similarity=0.457 Sum_probs=67.5
Q ss_pred cccccceeeEEEEEEeecccceecccccceeeeehh------------------HHHHH---HHHhhhhcccccccCccc
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSR------------------LRKFL---LQEYSRCFLVGKSIPDAF 336 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r------------------~~~~l---~~~~~~~~~l~~~l~~s~ 336 (391)
..+.+||++..-+||+|||-..|.|..| |+|...- ....+ ++...+. ...+--..+.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~G-K~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~-~~~r~~~~S~ 157 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGG-KAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRR-LGRRRWDVSV 157 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCc-eehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCCcH
Confidence 4578999999999999999999999998 8875511 11111 1100000 0011122334
Q ss_pred hhhhhhhhhhhhhhhcccceeee-eccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 337 WWAVVTMTTVGYGVVLFSSAVYF-AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 337 ~~l~~~~~~l~i~i~~~a~~~y~-~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
..+.++.+...+++++.+..+|. +|+ + +|.||+||.+||+||+|+||.
T Consensus 158 ~~l~~i~~~~~~~~i~~gaa~fs~~E~------W-syfds~YyCFITltTIGFGDy 206 (350)
T KOG4404|consen 158 YNLVLILFTACILLICCGAAMFSSVEG------W-SYFDSYYYCFITLTTIGFGDY 206 (350)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhcccC------c-chhhhhheeeeeeeeccccch
Confidence 45555555555555666666664 342 2 677999999999999999994
No 21
>KOG1419|consensus
Probab=98.62 E-value=3.7e-09 Score=106.27 Aligned_cols=94 Identities=26% Similarity=0.418 Sum_probs=68.7
Q ss_pred HHHHHHHHH-HHhhhceEEEEeeCC----CCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHh
Q psy11394 248 PILMYIFAG-VVLFSSTVYFAEAGS----DQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEY 322 (391)
Q Consensus 248 ilp~~~~~~-~~~~~~~~y~~e~~~----~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~ 322 (391)
+...|++++ ++.+|.++|.+|+++ .+..|.+.-+++||.++|+||+||||..|.+++| |+
T Consensus 234 iTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlG-r~-------------- 298 (654)
T KOG1419|consen 234 ITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLG-RL-------------- 298 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchh-HH--------------
Confidence 344556554 445566999999984 4567999999999999999999999999999996 22
Q ss_pred hhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCC
Q psy11394 323 SRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSE 365 (391)
Q Consensus 323 ~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~ 365 (391)
+.+....+++.++.+...++..++..-+-|++.+
T Consensus 299 ---------laa~fsligiSFFALPAGILGSGfALKVQeq~RQ 332 (654)
T KOG1419|consen 299 ---------LAACFSLIGISFFALPAGILGSGFALKVQEQHRQ 332 (654)
T ss_pred ---------HHHHHHHHHHHHHhcccccccchhhhhhHHHHHH
Confidence 2223344566677777777777766666666554
No 22
>KOG2302|consensus
Probab=98.61 E-value=1.1e-08 Score=107.92 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=95.7
Q ss_pred hhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhh-hhhhhhhHHHHHHHHHH-----
Q psy11394 161 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLI-ETFLIMPSLYCLLTSLL----- 234 (391)
Q Consensus 161 a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-e~v~~~~F~~E~llRl~----- 234 (391)
.+.|+.++.++|.+|++..++|+...-.. .....|..+ ++++.++|.+|+.++++
T Consensus 1123 hk~Fd~vVl~~IfLNcVtialerp~i~~~-------------------s~EriFltlsnyIFtaIfV~Em~lKVVALGl~ 1183 (1956)
T KOG2302|consen 1123 HKAFDTVVLFFIFLNCVTIALERPAIVEG-------------------STERIFLTLSNYIFTAIFVVEMTLKVVALGLY 1183 (1956)
T ss_pred HhhhhheehhhhhhhhHHHHhcccccccC-------------------cceEEEEEecchHHHHHHHHHHHHHHHhhhhc
Confidence 56899999999999999999998543222 122233344 48999999999999987
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394 235 -----LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309 (391)
Q Consensus 235 -----f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril 309 (391)
|+++.||.+|.+.++...+.+++.+.+.. .+ .| ..+.+. +|.+|.+ |.+
T Consensus 1184 fge~aYl~ssWN~LDgflv~vsviDilvs~asa~-----------g~-kI-----LgVlrv-------LRlLRtl--RpL 1237 (1956)
T KOG2302|consen 1184 FGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAG-----------GA-KI-----LGVLRV-------LRLLRTL--RPL 1237 (1956)
T ss_pred cchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-----------hH-HH-----HHHHHH-------HHHHHHh--hHH
Confidence 99999999999988888888776553210 00 00 001111 3333333 445
Q ss_pred eehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhccccee
Q psy11394 310 CRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAV 357 (391)
Q Consensus 310 kL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~ 357 (391)
|.+....++ + ....++..+.+.++.++++...++++|+.+.
T Consensus 1238 RviSra~gl-k------lVveTL~sSLkpIgnIvliccaffiiFgilg 1278 (1956)
T KOG2302|consen 1238 RVISRAPGL-K------LVVETLISSLKPIGNIVLICCAFFIIFGILG 1278 (1956)
T ss_pred HHHhhcccH-H------HHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 555555555 5 5556677788888777666666666666543
No 23
>KOG2301|consensus
Probab=98.59 E-value=5.9e-09 Score=118.31 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=138.9
Q ss_pred hHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhh
Q psy11394 142 HEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFL 221 (391)
Q Consensus 142 ~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~ 221 (391)
.++|+.+..++-+|. +.+++.++++++++.+..++++..+. +...+.+.+.++
T Consensus 430 ~~~~~~~~~~v~~~~-------~~~~i~i~i~lnt~~~a~eh~~~~~~--------------------~~~~l~~~~~vF 482 (1592)
T KOG2301|consen 430 LKFKQWLRKMVFDPF-------VILFITICIALNTLFMAMEHYEMTKA--------------------RNYLLYLGNVVF 482 (1592)
T ss_pred HHHHHHHHHhhhcce-------ehhhhHHHHhhcccEEEEEEeCCcHH--------------------HHHHHHHHHHHH
Confidence 445556666666654 88899999999999999999876553 456778999999
Q ss_pred hhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeec
Q psy11394 222 IMPSLYCLLTSLL------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGY 295 (391)
Q Consensus 222 ~~~F~~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGy 295 (391)
...|+.|+.++.+ |+.+.+|++|.+.+..-.+... .++-.|+
T Consensus 483 ~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~--------------------------------~~~~~g~ 530 (1592)
T KOG2301|consen 483 TGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL--------------------------------LKNVYGL 530 (1592)
T ss_pred HHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc--------------------------------ccchHHH
Confidence 9999999999998 8999999999877761111110 2334466
Q ss_pred ccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeec-cCCCCC-----CC
Q psy11394 296 GDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAE-AGSENS-----FF 369 (391)
Q Consensus 296 gd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E-~~~~~~-----~f 369 (391)
+-+|.+|++ |++|+.+++..+ + .+.+.+.++...++.+.++++++++++|.+.+..- +..+.. +|
T Consensus 531 svLr~frll--RIfkl~k~wp~l-~------~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~ 601 (1592)
T KOG2301|consen 531 SVLRSFRLL--RIFKLIKSWPTL-N------DLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHF 601 (1592)
T ss_pred HHHHHHHHH--HHHHHHHhhHHH-H------HHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccch
Confidence 669999999 999999999999 8 89999999999999999999999999998776553 333333 78
Q ss_pred CCcchhhhhhhhhhccc
Q psy11394 370 KSIPDAFWWAVVTMTTV 386 (391)
Q Consensus 370 ~s~~~alywaivT~tTV 386 (391)
.+++.|+-+... +|+=
T Consensus 602 ~~fp~sfl~vFq-lt~e 617 (1592)
T KOG2301|consen 602 TDFPHSFLSVFQ-ITCE 617 (1592)
T ss_pred hhCHHHHHHHHH-HcCC
Confidence 889999988887 5543
No 24
>KOG0501|consensus
Probab=98.53 E-value=5.6e-08 Score=98.33 Aligned_cols=136 Identities=13% Similarity=0.177 Sum_probs=90.0
Q ss_pred hhHhhhhhhhhhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCC
Q psy11394 213 PFFLIETFLIMPSLYCLLTSLL--------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSD 272 (391)
Q Consensus 213 ~~~~ie~v~~~~F~~E~llRl~--------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~ 272 (391)
.+..+|.+..++|.++++++|- |+|+ |.+||+++-+|+-+.-.+ |+.
T Consensus 250 s~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF----------~~~-- 316 (971)
T KOG0501|consen 250 SWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAF----------ERD-- 316 (971)
T ss_pred eEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHh----------hcc--
Confidence 4568899999999999998875 7777 889999999999876543 322
Q ss_pred CCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhc
Q psy11394 273 QSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVL 352 (391)
Q Consensus 273 ~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~ 352 (391)
++.+.|+ +-.+.+. |++||-|..+.+ .. -+.-....+.+++.+..++..|
T Consensus 317 degI~SL------------------FSaLKVV--RLLRLGRVaRKL-D~---------YlEYGAA~LvLLlC~y~lvAHW 366 (971)
T KOG0501|consen 317 DEGIGSL------------------FSALKVV--RLLRLGRVARKL-DH---------YLEYGAAVLVLLLCVYGLVAHW 366 (971)
T ss_pred cccHHHH------------------HHHHHHH--HHHHHHHHHHHH-HH---------HHHhhHHHHHHHHHHHHHHHHH
Confidence 2223332 2223444 566666666555 32 2222334455555566666788
Q ss_pred ccceeeeeccCC---------C-----------------------------CCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 353 FSSAVYFAEAGS---------E-----------------------------NSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 353 ~a~~~y~~E~~~---------~-----------------------------~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.||++|.+..-. + ++.=.-|..|+||++..|||||+|+|
T Consensus 367 lACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNi 443 (971)
T KOG0501|consen 367 LACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNI 443 (971)
T ss_pred HHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhccccccc
Confidence 899999884311 0 11112388999999999999999986
No 25
>KOG3840|consensus
Probab=98.35 E-value=4.3e-07 Score=85.56 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=75.4
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCc-cCC-CCCCceeeec--CCCCChHHHHhhhhcCCeeecCCCC
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI-RYF-DPLRNEYFFD--RNRPSFDAILYYYQSGGRLRRPVNV 103 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~-~~~-~~~~~e~f~D--R~~~~F~~Il~y~r~~g~l~~p~~~ 103 (391)
....+++.+-|.|+||..+++.|+..|.|+++++.... ++. ..+++||=.. -...+|+.||+||++ |.+.||+.+
T Consensus 92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYks-G~iRCP~~v 170 (438)
T KOG3840|consen 92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQS-GTMRCPSSV 170 (438)
T ss_pred CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhc-CceeCCCCC
Confidence 34557999999999999999999999999999886432 222 3466776552 246789999999999 899999999
Q ss_pred CHHhHHHHHhcCCCcch
Q psy11394 104 PLDVFSEEIKFYELGDV 120 (391)
Q Consensus 104 ~~~~~~~E~~f~~l~~~ 120 (391)
.+..++|.++|--++-+
T Consensus 171 SvpELrEACDYLlipF~ 187 (438)
T KOG3840|consen 171 SVSELREACDYLLVPFN 187 (438)
T ss_pred chHHHHhhcceEEeecc
Confidence 99999999999877654
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.27 E-value=2.2e-07 Score=72.01 Aligned_cols=40 Identities=40% Similarity=0.656 Sum_probs=25.6
Q ss_pred hhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 349 ~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.++.++.+.+..+++ ..-.++.||+||+++|+|||||||+
T Consensus 5 ~~l~~~~~~~~~~~~---~~~~~~~da~yfs~~t~tTvGyGDi 44 (79)
T PF07885_consen 5 LVLAFGAIFFYISEG---SEKWSFIDALYFSFVTITTVGYGDI 44 (79)
T ss_dssp HHHHHHHHHHHHTTS---SSTTSHHHHHHHHHHHHTT---SSS
T ss_pred eeeHHHHHHHHHHHh---cccCCHHHHHHHHHHHHhcccCCCc
Confidence 334445555544322 2347899999999999999999996
No 27
>KOG1418|consensus
Probab=98.24 E-value=1.5e-07 Score=94.65 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=32.0
Q ss_pred cccccccceeeEEEEEEeecccceecccccceeeeeh
Q psy11394 276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRS 312 (391)
Q Consensus 276 f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~ 312 (391)
--+++++++++...+||+|||++.|.+..| |++-.+
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~G-r~~~i~ 148 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAG-RLFTIL 148 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcc-hhHHHH
Confidence 347889999999999999999999999998 887664
No 28
>KOG0500|consensus
Probab=98.16 E-value=9.8e-07 Score=88.23 Aligned_cols=131 Identities=10% Similarity=0.074 Sum_probs=88.8
Q ss_pred ChhHhhhhhhhhhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCC
Q psy11394 212 DPFFLIETFLIMPSLYCLLTSLL-------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSD 272 (391)
Q Consensus 212 ~~~~~ie~v~~~~F~~E~llRl~-------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~ 272 (391)
..+..+|+++.+.|.++.++|.- |+.+..-.+|+++++|.-...+...
T Consensus 29 ~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~------------- 95 (536)
T KOG0500|consen 29 ENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG------------- 95 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC-------------
Confidence 44678999999999999998864 6777778999999999876553210
Q ss_pred CCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhc
Q psy11394 273 QSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVL 352 (391)
Q Consensus 273 ~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~ 352 (391)
. .-+.|+. |++|+.|.+.-+-+ .-.++-......+..++..+++++.|
T Consensus 96 --------~----------------~~~~r~n--Rllk~yRl~~F~~r------TetrT~~Pn~fri~~lv~~~~ilfHW 143 (536)
T KOG0500|consen 96 --------S----------------ASLERLN--RLLKIYRLFEFFDR------TETRTTYPNAFRISKLVHYCLILFHW 143 (536)
T ss_pred --------c----------------chHHHHH--HHHHHHHHHHHHHH------hccccCCchHHHHHHHHHHHHHHHHH
Confidence 0 2233455 66666666555522 33334444445556667777888899
Q ss_pred ccceeeeeccCC------------CCCCCC---------Ccchhhhhhhhhhcccc
Q psy11394 353 FSSAVYFAEAGS------------ENSFFK---------SIPDAFWWAVVTMTTVG 387 (391)
Q Consensus 353 ~a~~~y~~E~~~------------~~~~f~---------s~~~alywaivT~tTVG 387 (391)
.||+.|.+-... .+..|. .|.-|+||+..|+||+|
T Consensus 144 NaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG 199 (536)
T KOG0500|consen 144 NACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG 199 (536)
T ss_pred hhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc
Confidence 999888773211 122222 36779999999999998
No 29
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.97 E-value=5.7e-06 Score=63.82 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=61.7
Q ss_pred EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHHh
Q psy11394 34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIK 113 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~~ 113 (391)
++++|||+.|.+.+..|.+.+..+-....... .-.+...-.+.|++++.|+.+|+|+++ |++..+.+ ....+.+.|+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~-~~~~~~~i~l~~~~~~~f~~~l~~ly~-~~~~~~~~-~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDF-KESKKSEIYLDDVSPEDFRALLEFLYT-GKLDLPEE-NVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCC-ccCCCCEEEecCCCHHHHHHHHHeecC-ceeecCHH-HHHHHHHHHH
Confidence 56999999999999999888644332211111 101223334558999999999999999 78887776 6677899999
Q ss_pred cCCCcch
Q psy11394 114 FYELGDV 120 (391)
Q Consensus 114 f~~l~~~ 120 (391)
||++++.
T Consensus 79 ~~~~~~l 85 (90)
T smart00225 79 YLQIPGL 85 (90)
T ss_pred HHCcHHH
Confidence 9999764
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.94 E-value=5.4e-06 Score=83.39 Aligned_cols=43 Identities=33% Similarity=0.689 Sum_probs=30.9
Q ss_pred hhhhcccce-eeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 348 YGVVLFSSA-VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 348 i~i~~~a~~-~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
..++.++.+ .+++|.+.+ ..+.++.+|+||+++|+|||||||+
T Consensus 145 ~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi 188 (393)
T PRK10537 145 TSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDI 188 (393)
T ss_pred HHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCC
Confidence 334444444 345554333 3568999999999999999999996
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.12 E-value=0.00049 Score=69.37 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=33.6
Q ss_pred CCcccccccceeeEEEEEEeecccceecccccceeeeehhH
Q psy11394 274 SFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRL 314 (391)
Q Consensus 274 ~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~ 314 (391)
..+.++.+++||+++|+|||||||+.|.+..| |++-..-.
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~g-rl~~i~~i 203 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDIVPVSESA-RLFTISVI 203 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCCCCCCHHH-HHHHHHHH
Confidence 35679999999999999999999999999876 77655443
No 32
>KOG0499|consensus
Probab=96.74 E-value=0.0018 Score=66.53 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=81.7
Q ss_pred ChhHhhhhhhhhhHHHHHHH-----HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCC
Q psy11394 212 DPFFLIETFLIMPSLYCLLT-----SLL---------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGS 271 (391)
Q Consensus 212 ~~~~~ie~v~~~~F~~E~ll-----Rl~---------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~ 271 (391)
+.|.+.|++|.+++.+++++ ++. |.++.-.-+|+++++|+-+..+...+
T Consensus 261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~----------- 329 (815)
T KOG0499|consen 261 HYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF----------- 329 (815)
T ss_pred hhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc-----------
Confidence 55789999999999999873 222 77776778999999998766643210
Q ss_pred CCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCcc-chhhhhhhhhhhhhh
Q psy11394 272 DQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDA-FWWAVVTMTTVGYGV 350 (391)
Q Consensus 272 ~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s-~~~l~~~~~~l~i~i 350 (391)
.-..|+- |+||....+... + .|...+.+. ...++.....++..+
T Consensus 330 --------------------------~p~wR~~--R~lK~~sF~e~~-~------~Le~i~s~~y~~RV~rT~~Ymlyil 374 (815)
T KOG0499|consen 330 --------------------------NPMWRAN--RMLKYTSFFEFN-H------HLESIMSKAYIYRVIRTTGYLLYIL 374 (815)
T ss_pred --------------------------chhhhhh--hHHHHHHHHHHH-H------HHHHHhcchhhhhhHHHHHHHHHHH
Confidence 1122555 666666555444 3 333333322 233344455555566
Q ss_pred hcccceeeeecc--CC--C----CCCCCCcchhhhhhhhhhccccc
Q psy11394 351 VLFSSAVYFAEA--GS--E----NSFFKSIPDAFWWAVVTMTTVGY 388 (391)
Q Consensus 351 ~~~a~~~y~~E~--~~--~----~~~f~s~~~alywaivT~tTVGY 388 (391)
.+-|++-|..-. +- + +..=..|..++|||+-|+||+|-
T Consensus 375 HinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~ 420 (815)
T KOG0499|consen 375 HINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGG 420 (815)
T ss_pred hhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcC
Confidence 777776665421 11 1 11225688999999999999993
No 33
>PLN03223 Polycystin cation channel protein; Provisional
Probab=96.66 E-value=0.00037 Score=77.41 Aligned_cols=75 Identities=8% Similarity=-0.099 Sum_probs=57.2
Q ss_pred ceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhh
Q psy11394 298 MRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFW 377 (391)
Q Consensus 298 ~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~aly 377 (391)
...++++ |++|++|..+.+ + .+..++..+...++.++++++++++.|+.+.+.+-+.. ...|.++..|++
T Consensus 1298 lIFLsiL--KfLRLLRFNPrL-~------vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~-ve~FSTf~sSL~ 1367 (1634)
T PLN03223 1298 NIILLLG--RILKLMDFQPRL-G------VITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNA-SVHFSDMTDSIN 1367 (1634)
T ss_pred HHHHHHH--HHHHHhccChhH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhcCHHHHHH
Confidence 4567778 899999998888 7 78888999999998888888888888877666665433 448888888777
Q ss_pred hhhhh
Q psy11394 378 WAVVT 382 (391)
Q Consensus 378 waivT 382 (391)
=.+..
T Consensus 1368 TLFqM 1372 (1634)
T PLN03223 1368 SLFEN 1372 (1634)
T ss_pred HHHHH
Confidence 44433
No 34
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=96.53 E-value=7.4e-05 Score=57.73 Aligned_cols=35 Identities=37% Similarity=0.483 Sum_probs=26.2
Q ss_pred cccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394 276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR 311 (391)
Q Consensus 276 f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL 311 (391)
-.+..+++||+++++|||||||+.|.+..| |++-.
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~g-r~~~~ 56 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQTPAG-RIFTI 56 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSSHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCccch-HHHHH
Confidence 457889999999999999999999998775 44433
No 35
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.52 E-value=0.00072 Score=74.67 Aligned_cols=28 Identities=46% Similarity=0.892 Sum_probs=24.6
Q ss_pred cceeeEEEEEEeecccceecccccceeee
Q psy11394 282 AFWWAVVTMTTVGYGDMRCGAFFERGVFC 310 (391)
Q Consensus 282 ~~w~~iit~TTvGygd~r~~r~lg~Rilk 310 (391)
++||+++|||||||||+.|.+..+ |++-
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E-~i~~ 281 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIE-MIFI 281 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccch-HHHH
Confidence 799999999999999999999885 4443
No 36
>KOG1420|consensus
Probab=96.50 E-value=0.0037 Score=64.09 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=40.2
Q ss_pred hceEEEEeeCCCC-CCc-----ccccccceeeEEEEEEeecccceecccccceeeeehhHHHHH
Q psy11394 261 SSTVYFAEAGSDQ-SFF-----KSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFL 318 (391)
Q Consensus 261 ~~~~y~~e~~~~~-~~f-----~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l 318 (391)
.+++...|+..++ ..| -+.-++.|+.++||+||||||++..+.+| |+|-+.-...++
T Consensus 265 ag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg-rlfmvffil~gl 327 (1103)
T KOG1420|consen 265 AGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG-RLFMVFFILGGL 327 (1103)
T ss_pred cceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh-HHHHHHHHHHHH
Confidence 4577888876543 223 24445677889999999999999999998 766554444444
No 37
>KOG3193|consensus
Probab=96.06 E-value=0.0028 Score=64.51 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 337 WWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 337 ~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+++.+++..++++++..-+.+--+++... .--+...++||.+||.+||||||.
T Consensus 185 ~ql~ll~s~l~clift~~c~i~h~qra~~--k~i~lf~s~y~v~vtfstvgygd~ 237 (1087)
T KOG3193|consen 185 RQLLLLFSVLACLIFTGMCSIEHLQRARG--KRIDLFTSFYFVMVTFSTVGYGDW 237 (1087)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHccC--ceeeeeeeEEEEEEEEeecccccc
Confidence 55555555555555544343333333222 224566899999999999999994
No 38
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=95.86 E-value=0.00068 Score=69.16 Aligned_cols=129 Identities=11% Similarity=0.111 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----ceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394 235 LYSVVMIYVHVLIPILMYIFAGVVLFS-----STVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309 (391)
Q Consensus 235 f~~~~~~iiDll~ilp~~~~~~~~~~~-----~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril 309 (391)
|++++||++|++.++..+..+++.... ..+-..+ .++..|.++.....|......-. |-...+..+ |++
T Consensus 239 y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~--~~~~~fv~f~~~a~~~~~~~~l~--a~~vfl~~l--rll 312 (425)
T PF08016_consen 239 YFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYR--ENPRSFVDFQELAQWDQLYRYLL--AFLVFLLWL--RLL 312 (425)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccccccCCHHHHHHHHHHHHHHH--HHHHHHHHH--HHh
Confidence 899999999998887766555433211 1111111 23344544444333221110000 113444556 888
Q ss_pred eehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhh
Q psy11394 310 CRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFW 377 (391)
Q Consensus 310 kL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~aly 377 (391)
|++|..+.+ . .+.+++..+...+..++++++++++.++.+.+.+-+.. ...|.++..|+.
T Consensus 313 ~~l~f~~~~-~------~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~-~~~f~s~~~s~~ 372 (425)
T PF08016_consen 313 KLLRFNRRL-S------LLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSY-SEDFSSFSSSLV 372 (425)
T ss_pred hheeecchH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccccCCHHHHHH
Confidence 888888777 6 78889999999999988888888888988888776543 347888877665
No 39
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=94.69 E-value=0.0085 Score=59.15 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=17.6
Q ss_pred CCCCcchhhhhhhhhhcccccCC
Q psy11394 368 FFKSIPDAFWWAVVTMTTVGYGD 390 (391)
Q Consensus 368 ~f~s~~~alywaivT~tTVGYGD 390 (391)
+..+|.+|++|++-|+||||||.
T Consensus 81 ~~~~f~~aF~FSveT~tTIGYG~ 103 (336)
T PF01007_consen 81 NVNSFTSAFLFSVETQTTIGYGS 103 (336)
T ss_dssp T-TTHHHHHHHHHHHHTT---SS
T ss_pred cccchhhheeEEEEEEEEeccCC
Confidence 45789999999999999999996
No 40
>KOG3599|consensus
Probab=93.67 E-value=0.022 Score=62.12 Aligned_cols=140 Identities=8% Similarity=0.049 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhc-----eE--EEEeeCCCCCCcccccccceeeE
Q psy11394 221 LIMPSLYCLLTSLL------LYSVVMIYVHVLIPILMYIFAGVVLFSS-----TV--YFAEAGSDQSFFKSIPDAFWWAV 287 (391)
Q Consensus 221 ~~~~F~~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~~~~~~-----~~--y~~e~~~~~~~f~si~~~~w~~i 287 (391)
+++.|+++-+.++. |++++||++|++.+...++.+++.+... .+ +..+. +..|.++...--|..
T Consensus 475 ~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~---~~~f~~F~~~a~~~~ 551 (798)
T KOG3599|consen 475 FVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERAS---PRTFIDFTEVAQWNI 551 (798)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CccccCHHHHHHHHH
Confidence 44556666655554 8999999999998888877766544321 11 12221 222322222221211
Q ss_pred EEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCC
Q psy11394 288 VTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENS 367 (391)
Q Consensus 288 it~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~ 367 (391)
..- .=-|-...++.+ |++|++|..+.+ + .+..++..++..++.+.++++++++.++.+.|.+-+... .
T Consensus 552 ~~~--~l~a~lvfl~ti--K~~k~l~f~~t~-~------~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v-~ 619 (798)
T KOG3599|consen 552 AAR--NLLAFLVFLTTI--KLWKVLRFNKTM-S------QFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV-S 619 (798)
T ss_pred HHH--HHHHHHHHHHHH--HHHHhcchhHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-C
Confidence 100 000114566777 999999999999 7 888899999999988888888888888888887765332 2
Q ss_pred CCCCcchh
Q psy11394 368 FFKSIPDA 375 (391)
Q Consensus 368 ~f~s~~~a 375 (391)
+|.++.+|
T Consensus 620 ~f~~f~~s 627 (798)
T KOG3599|consen 620 DFRTFVAS 627 (798)
T ss_pred ChHHHHHH
Confidence 55555443
No 41
>KOG1418|consensus
Probab=93.32 E-value=0.029 Score=56.19 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=20.7
Q ss_pred CCcchhhhhhhhhhcccccCCC
Q psy11394 370 KSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 370 ~s~~~alywaivT~tTVGYGDi 391 (391)
-+|.+|+||+++++||+|||++
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i 135 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNI 135 (433)
T ss_pred eecchhHhhhhheeeeccCCcc
Confidence 4899999999999999999996
No 42
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=90.53 E-value=0.1 Score=57.05 Aligned_cols=23 Identities=0% Similarity=-0.261 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11394 235 LYSVVMIYVHVLIPILMYIFAGV 257 (391)
Q Consensus 235 f~~~~~~iiDll~ilp~~~~~~~ 257 (391)
|+++.||++|.+.+..++..++.
T Consensus 418 y~~~~wn~~d~~~~~~~~~~~~~ 440 (743)
T TIGR00870 418 YIHQLWNILDFGMNSFYLATFLD 440 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999777666555443
No 43
>KOG3614|consensus
Probab=89.95 E-value=0.37 Score=54.47 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11394 235 LYSVVMIYVHVLIPILMYIFAGV 257 (391)
Q Consensus 235 f~~~~~~iiDll~ilp~~~~~~~ 257 (391)
|+.+.||++|+++++-|.+++++
T Consensus 858 ~f~d~wN~~d~~ai~~F~vG~~~ 880 (1381)
T KOG3614|consen 858 YFADFWNLIDLLAILLFLVGPVL 880 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhee
Confidence 88899999999999999988754
No 44
>PHA03098 kelch-like protein; Provisional
Probab=86.69 E-value=0.54 Score=49.21 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCceEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCH
Q psy11394 30 FCERVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPL 105 (391)
Q Consensus 30 ~~~~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~ 105 (391)
++-.++++|+|+.|...+..|.... ..|+.+... .+++-+ + +++.|+.+|+|+.+ |++.+..+- .
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--------~~~i~l~~-~~~~~~~~l~y~Yt-g~~~i~~~~-~ 78 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--------ENEINLNI-DYDSFNEVIKYIYT-GKINITSNN-V 78 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--------CceEEecC-CHHHHHHHHHHhcC-CceEEcHHH-H
Confidence 3446777789999999999997654 344432111 234444 5 99999999999999 798776554 6
Q ss_pred HhHHHHHhcCCCcchh
Q psy11394 106 DVFSEEIKFYELGDVA 121 (391)
Q Consensus 106 ~~~~~E~~f~~l~~~~ 121 (391)
..+.+-|++|+++...
T Consensus 79 ~~ll~~A~~l~~~~l~ 94 (534)
T PHA03098 79 KDILSIANYLIIDFLI 94 (534)
T ss_pred HHHHHHHHHhCcHHHH
Confidence 6688999999998854
No 45
>KOG3684|consensus
Probab=86.43 E-value=0.11 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.696 Sum_probs=21.6
Q ss_pred CCCCcchhhhhhhhhhcccccCCC
Q psy11394 368 FFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 368 ~f~s~~~alywaivT~tTVGYGDi 391 (391)
.-.+|.+++|...+|..++|||||
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDi 307 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDI 307 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcc
Confidence 445799999999999999999997
No 46
>KOG4404|consensus
Probab=83.11 E-value=0.57 Score=45.44 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=22.7
Q ss_pred cccccceeeEEEEEEeecccceeccc
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAF 303 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~ 303 (391)
|+-|+.|++.||+||+|+||.+.+.-
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~ 211 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQ 211 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcc
Confidence 55688999999999999999987764
No 47
>KOG3827|consensus
Probab=74.61 E-value=0.88 Score=45.15 Aligned_cols=56 Identities=20% Similarity=0.406 Sum_probs=35.3
Q ss_pred cchhhhhhh-hhhhhhhhcccceeeeec-------cCCCC-------CCCCCcchhhhhhhhhhcccccCC
Q psy11394 335 AFWWAVVTM-TTVGYGVVLFSSAVYFAE-------AGSEN-------SFFKSIPDAFWWAVVTMTTVGYGD 390 (391)
Q Consensus 335 s~~~l~~~~-~~l~i~i~~~a~~~y~~E-------~~~~~-------~~f~s~~~alywaivT~tTVGYGD 390 (391)
.+++..+++ ...++..++||.+.|.+- ...++ .+.+++..|+-|++-|=||+|||-
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~ 131 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGF 131 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccc
Confidence 344443333 233334556677777662 11111 356789999999999999999993
No 48
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=69.06 E-value=4 Score=32.49 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=55.2
Q ss_pred eEEEEeC-CeeeeecHHHhccCCCccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhHHH
Q psy11394 33 RVVINVS-GLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSE 110 (391)
Q Consensus 33 ~v~lNVg-G~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~ 110 (391)
-++|.|| |++|...+..|...-. .+.++............++-+ |=+++.|..+++|+.+ |++..+..-....+.+
T Consensus 12 D~~i~v~d~~~~~vhk~iL~~~S~-~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~-~~~~~~~~~~~~~ll~ 89 (111)
T PF00651_consen 12 DVTIRVGDGKTFYVHKNILAARSP-YFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYT-GEIEINSDENVEELLE 89 (111)
T ss_dssp -EEEEETTTEEEEE-HHHHHHHBH-HHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHH-SEEEEE-TTTHHHHHH
T ss_pred CEEEEECCCEEEeechhhhhccch-hhhhcccccccccccccccccccccccccccccccccC-CcccCCHHHHHHHHHH
Confidence 4789999 9999999999965321 122221111111111123433 4468899999999999 7877763335666888
Q ss_pred HHhcCCCcchh
Q psy11394 111 EIKFYELGDVA 121 (391)
Q Consensus 111 E~~f~~l~~~~ 121 (391)
=|++|+++...
T Consensus 90 lA~~~~~~~L~ 100 (111)
T PF00651_consen 90 LADKLQIPELK 100 (111)
T ss_dssp HHHHTTBHHHH
T ss_pred HHHHhCcHHHH
Confidence 99999998753
No 49
>KOG3193|consensus
Probab=68.12 E-value=3.2 Score=43.04 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=23.1
Q ss_pred cccccceeeEEEEEEeecccceecccc
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFF 304 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~l 304 (391)
.+..++|+.++|++||||||..|--+.
T Consensus 217 ~lf~s~y~v~vtfstvgygd~~pd~w~ 243 (1087)
T KOG3193|consen 217 DLFTSFYFVMVTFSTVGYGDWYPDYWA 243 (1087)
T ss_pred eeeeeEEEEEEEEeeccccccccccch
Confidence 444678999999999999999998776
No 50
>KOG3609|consensus
Probab=67.30 E-value=2.4 Score=46.06 Aligned_cols=45 Identities=4% Similarity=-0.006 Sum_probs=30.1
Q ss_pred hhHhhhhhhhhhHH---HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11394 213 PFFLIETFLIMPSL---YCLLTSLL------LYSVVMIYVHVLIPILMYIFAGV 257 (391)
Q Consensus 213 ~~~~ie~v~~~~F~---~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~ 257 (391)
+..++|.+...|.. .|=+-.+| |++..||++|++.+.-+...+.+
T Consensus 382 ~p~~vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~l 435 (822)
T KOG3609|consen 382 TPQALEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFIL 435 (822)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577776665543 22223344 99999999999888777766654
No 51
>KOG0498|consensus
Probab=65.74 E-value=1.1 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=22.0
Q ss_pred cccceeeEEEEEEeecccceecccc
Q psy11394 280 PDAFWWAVVTMTTVGYGDMRCGAFF 304 (391)
Q Consensus 280 ~~~~w~~iit~TTvGygd~r~~r~l 304 (391)
-.++||++.+|||||||+.-+....
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~~~~ 320 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHANNMG 320 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCCCcH
Confidence 3478999999999999999988776
No 52
>PHA02790 Kelch-like protein; Provisional
Probab=44.21 E-value=20 Score=37.20 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=55.0
Q ss_pred EEeCCeeeeecHHHhccCC---CccccC-ccCCccCCCCCCceee---ecCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 36 INVSGLRFETQLRTLNQFP---ETLLGD-PARRIRYFDPLRNEYF---FDRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 36 lNVgG~~f~t~~~tl~~~p---~t~l~~-~~~~~~~~~~~~~e~f---~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
+-|.|..|...|..|...- ..|+.+ +.+. +++.. .|=|++.++.||+|..| |++.+..+ ..+.+
T Consensus 26 ~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es-------~~~v~~~~~~v~~~~l~~lldy~YT-g~l~it~~-nV~~l 96 (480)
T PHA02790 26 IEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKN-------KDPVTRVCLDLDIHSLTSIVIYSYT-GKVYIDSH-NVVNL 96 (480)
T ss_pred EEEcCcEEeeehhhhhhcCHHHHHHhcCCcccc-------ccceEEEecCcCHHHHHHHHHhhee-eeEEEecc-cHHHH
Confidence 4577888999999996653 444432 2211 11222 26789999999999999 89988655 57889
Q ss_pred HHHHhcCCCcch
Q psy11394 109 SEEIKFYELGDV 120 (391)
Q Consensus 109 ~~E~~f~~l~~~ 120 (391)
++-|.+++++..
T Consensus 97 l~aA~~Lqi~~v 108 (480)
T PHA02790 97 LRASILTSVEFI 108 (480)
T ss_pred HHHHHHhChHHH
Confidence 999999999874
No 53
>PHA02713 hypothetical protein; Provisional
Probab=43.90 E-value=15 Score=38.99 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=55.5
Q ss_pred eEEEEeC-CeeeeecHHHhccCC---CccccC-ccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394 33 RVVINVS-GLRFETQLRTLNQFP---ETLLGD-PARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLD 106 (391)
Q Consensus 33 ~v~lNVg-G~~f~t~~~tl~~~p---~t~l~~-~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~ 106 (391)
-|+|.|+ |+.|...+..|.... ..|+.. +... ...+++-+ |=+++.|+.||+|+.| |++ . .-..+
T Consensus 27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~-----~~~~~v~l~~v~~~~~~~ll~y~Yt-~~i--~-~~nv~ 97 (557)
T PHA02713 27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIR-----DLVTRVNLQMFDKDAVKNIVQYLYN-RHI--S-SMNVI 97 (557)
T ss_pred CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhh-----ccCceEEeccCCHHHHHHHHHHhcC-CCC--C-HHHHH
Confidence 4778898 999999999997554 344432 1111 11234433 5689999999999999 663 2 23577
Q ss_pred hHHHHHhcCCCcchh
Q psy11394 107 VFSEEIKFYELGDVA 121 (391)
Q Consensus 107 ~~~~E~~f~~l~~~~ 121 (391)
.+++-|.+++++...
T Consensus 98 ~ll~aA~~lqi~~l~ 112 (557)
T PHA02713 98 DVLKCADYLLIDDLV 112 (557)
T ss_pred HHHHHHHHHCHHHHH
Confidence 788999999998753
No 54
>KOG3684|consensus
Probab=42.38 E-value=3 Score=42.41 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=29.1
Q ss_pred cccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394 276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR 311 (391)
Q Consensus 276 f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL 311 (391)
-.++-+++|.-.+|.-++||||+.|-|--| |-+.+
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycG-r~v~l 319 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCG-RGVAL 319 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCcccc-chHHH
Confidence 346778899999999999999999999987 55444
No 55
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=31.39 E-value=3.4 Score=40.95 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=17.5
Q ss_pred cccccccceeeEEEEEEeecccce
Q psy11394 276 FKSIPDAFWWAVVTMTTVGYGDMR 299 (391)
Q Consensus 276 f~si~~~~w~~iit~TTvGygd~r 299 (391)
..++.++|++++-|+||+|||...
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~ 105 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRY 105 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSE
T ss_pred ccchhhheeEEEEEEEEeccCCcc
Confidence 467889999999999999999943
No 56
>KOG0510|consensus
Probab=29.81 E-value=14 Score=40.28 Aligned_cols=32 Identities=22% Similarity=0.026 Sum_probs=24.4
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccC
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGD 60 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~ 60 (391)
.+....+++-+.+-|+.|-++.|+ .|++++..
T Consensus 304 ~d~~spLH~AA~yg~~ntv~rLL~-~~~~rlln 335 (929)
T KOG0510|consen 304 KDEESPLHFAAIYGRINTVERLLQ-ESDTRLLN 335 (929)
T ss_pred CCCCCchHHHHHcccHHHHHHHHh-CcCccccc
Confidence 344457888888888888888888 88888753
No 57
>KOG3676|consensus
Probab=25.05 E-value=2.6e+02 Score=30.78 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=32.7
Q ss_pred hhhhhhhhhhhhhhcccceeeeeccCCCCC-----------CCCCcchhhhhhhhhh--cccccCCC
Q psy11394 338 WAVVTMTTVGYGVVLFSSAVYFAEAGSENS-----------FFKSIPDAFWWAVVTM--TTVGYGDM 391 (391)
Q Consensus 338 ~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~-----------~f~s~~~alywaivT~--tTVGYGDi 391 (391)
.+..++++-+++++.||..+|.+-.+.++. .-.+..+++.-++.|+ .|+||||.
T Consensus 542 DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl 608 (782)
T KOG3676|consen 542 DLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDL 608 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhh
Confidence 444555666666777888887663322211 2344556655556665 79999984
No 58
>KOG4441|consensus
Probab=24.93 E-value=56 Score=34.85 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=58.1
Q ss_pred eEEEEeCCeeeeecHHHhccCCC---ccccC-ccCCccCCCCCCcee-eecCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394 33 RVVINVSGLRFETQLRTLNQFPE---TLLGD-PARRIRYFDPLRNEY-FFDRNRPSFDAILYYYQSGGRLRRPVNVPLDV 107 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p~---t~l~~-~~~~~~~~~~~~~e~-f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~ 107 (391)
-|+|-||++.|...+-.|...-. .|+.. +.. ...+++ ..+=||+.++.+++|..| |++.+- +-..+.
T Consensus 38 Dv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e------~~~~~i~l~~v~~~~l~~ll~y~Yt-~~i~i~-~~nVq~ 109 (571)
T KOG4441|consen 38 DVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE------SKQKEINLEGVDPETLELLLDYAYT-GKLEIS-EDNVQE 109 (571)
T ss_pred eEEEEECCeeechHHHHHHhccHHHHHHhcCCccc------ccceEEEEecCCHHHHHHHHHHhhc-ceEEec-hHhHHH
Confidence 38899999999999999966542 33321 111 122333 346699999999999999 787763 457788
Q ss_pred HHHHHhcCCCcch
Q psy11394 108 FSEEIKFYELGDV 120 (391)
Q Consensus 108 ~~~E~~f~~l~~~ 120 (391)
+.+-|.++++.+.
T Consensus 110 ll~aA~~lQi~~v 122 (571)
T KOG4441|consen 110 LLEAASLLQIPEV 122 (571)
T ss_pred HHHHHHHhhhHHH
Confidence 9999999998774
No 59
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.35 E-value=33 Score=29.74 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=19.6
Q ss_pred CCCcchhhhhhhhhhcccccCCC
Q psy11394 369 FKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 369 f~s~~~alywaivT~tTVGYGDi 391 (391)
.....+++||+..+++|+|||++
T Consensus 115 i~~~~~~~~~~~~~l~~~G~~~v 137 (212)
T COG1226 115 ILARARDLDEAVETLTTVGADEV 137 (212)
T ss_pred EEEEeccchHHHHHHHHcCCCee
Confidence 45677888999999999999974
Done!