Query psy11394
Match_columns 391
No_of_seqs 283 out of 2687
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:17:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r9r_B Paddle chimera voltage 100.0 1.7E-64 5.9E-69 520.8 9.0 335 27-391 47-395 (514)
2 1t1d_A Protein (potassium chan 100.0 1.1E-32 3.9E-37 222.4 7.0 99 32-130 1-99 (100)
3 3kvt_A Potassium channel prote 100.0 7.1E-30 2.4E-34 211.3 9.3 95 30-125 3-97 (115)
4 1s1g_A Potassium voltage-gated 100.0 5.7E-29 1.9E-33 208.4 7.0 97 27-125 8-104 (124)
5 2nz0_B Potassium voltage-gated 99.9 1.3E-28 4.4E-33 210.2 7.1 97 27-125 30-126 (140)
6 1nn7_A Potassium channel KV4.2 99.9 1.8E-28 6.1E-33 199.9 6.9 91 33-125 1-91 (105)
7 3drz_A BTB/POZ domain-containi 99.9 4.5E-27 1.5E-31 192.6 4.4 93 28-121 2-97 (107)
8 3drx_A BTB/POZ domain-containi 99.9 3.1E-25 1E-29 198.9 7.9 95 26-121 6-103 (202)
9 3rvy_A ION transport protein; 99.9 1.2E-25 4.1E-30 215.0 -4.0 179 142-391 17-201 (285)
10 3beh_A MLL3241 protein; transm 99.9 1.8E-24 6E-29 212.9 -2.6 171 153-391 3-181 (355)
11 1orq_C Potassium channel; volt 99.9 3.4E-24 1.2E-28 197.6 -1.2 170 163-391 9-185 (223)
12 4dxw_A Navrh, ION transport pr 99.8 3.9E-21 1.3E-25 177.9 -1.7 168 161-391 11-185 (229)
13 2a9h_A Voltage-gated potassium 99.4 1.5E-14 5.3E-19 125.6 1.4 49 343-391 56-104 (155)
14 1ors_C Potassium channel; volt 99.4 1.3E-15 4.4E-20 129.1 -7.3 118 161-339 5-129 (132)
15 3um7_A Potassium channel subfa 99.3 2.2E-14 7.4E-19 137.5 -5.4 105 278-391 115-244 (309)
16 2kyh_A KVAP, voltage-gated pot 99.3 1.8E-13 6E-18 117.8 0.6 88 141-256 7-101 (147)
17 3ukm_A Potassium channel subfa 99.3 4.8E-14 1.7E-18 133.2 -6.2 107 277-391 92-221 (280)
18 2ih3_C Voltage-gated potassium 99.2 1.2E-12 4.1E-17 109.2 1.1 49 343-391 33-81 (122)
19 2k1e_A Water soluble analogue 99.0 9E-11 3.1E-15 94.8 2.3 53 339-391 8-60 (103)
20 3eff_K Voltage-gated potassium 98.9 2.7E-10 9.3E-15 96.9 1.9 55 337-391 6-60 (139)
21 3pjs_K KCSA, voltage-gated pot 98.9 3.2E-10 1.1E-14 99.5 1.4 51 341-391 37-87 (166)
22 4h33_A LMO2059 protein; bilaye 98.8 8.2E-10 2.8E-14 93.8 1.6 44 343-391 20-63 (137)
23 1p7b_A Integral membrane chann 98.6 9.5E-09 3.3E-13 99.6 1.6 63 329-391 53-116 (333)
24 1xl4_A Inward rectifier potass 98.5 1.5E-08 5.2E-13 97.0 1.2 60 331-391 41-102 (301)
25 3ouf_A Potassium channel prote 98.4 3.1E-08 1.1E-12 78.9 0.9 43 343-391 10-52 (97)
26 3ldc_A Calcium-gated potassium 98.4 3.7E-08 1.3E-12 76.0 0.8 32 353-391 17-48 (82)
27 2q67_A Potassium channel prote 98.4 2.9E-08 9.8E-13 81.5 -0.3 42 344-391 28-69 (114)
28 3vou_A ION transport 2 domain 98.4 4.3E-08 1.5E-12 84.1 0.7 43 343-391 30-72 (148)
29 2a9h_A Voltage-gated potassium 98.4 4.8E-09 1.6E-13 90.9 -6.0 46 260-305 66-111 (155)
30 2qks_A KIR3.1-prokaryotic KIR 98.3 5.9E-08 2E-12 93.6 0.3 42 348-391 55-98 (321)
31 2k1e_A Water soluble analogue 98.3 1.7E-08 5.9E-13 81.3 -3.6 48 263-311 25-72 (103)
32 2r9r_B Paddle chimera voltage 98.3 5.3E-08 1.8E-12 100.0 -1.8 97 209-305 269-402 (514)
33 2ih3_C Voltage-gated potassium 98.3 1.1E-08 3.6E-13 85.1 -5.9 49 261-310 44-92 (122)
34 1orq_C Potassium channel; volt 98.2 8.4E-08 2.9E-12 87.6 -1.7 47 259-305 146-192 (223)
35 3eff_K Voltage-gated potassium 98.1 4.3E-08 1.5E-12 83.2 -5.9 47 262-309 24-70 (139)
36 4h33_A LMO2059 protein; bilaye 98.1 4.5E-08 1.5E-12 83.0 -6.3 30 276-305 41-70 (137)
37 1lnq_A MTHK channels, potassiu 98.0 7.9E-07 2.7E-11 86.0 0.4 40 345-391 25-65 (336)
38 3beh_A MLL3241 protein; transm 98.0 1.2E-07 4E-12 92.7 -5.6 54 257-311 140-193 (355)
39 3pjs_K KCSA, voltage-gated pot 97.9 4.1E-07 1.4E-11 79.5 -4.5 50 261-311 50-99 (166)
40 3sya_A G protein-activated inw 97.8 3.5E-06 1.2E-10 81.6 0.5 24 368-391 88-111 (340)
41 4gx0_A TRKA domain protein; me 97.8 3.3E-06 1.1E-10 87.4 -0.3 22 370-391 50-71 (565)
42 3spc_A Inward-rectifier K+ cha 97.6 8.5E-06 2.9E-10 78.9 0.6 24 368-391 91-114 (343)
43 1p7b_A Integral membrane chann 97.6 1.8E-06 6.1E-11 83.6 -4.9 54 262-316 79-133 (333)
44 1xl4_A Inward rectifier potass 97.5 2.5E-06 8.4E-11 81.6 -5.2 46 271-317 75-120 (301)
45 2q67_A Potassium channel prote 97.5 2.6E-06 8.7E-11 69.8 -4.7 28 278-305 49-76 (114)
46 2qks_A KIR3.1-prokaryotic KIR 97.5 3.4E-06 1.1E-10 81.3 -4.7 48 267-315 65-114 (321)
47 3ukm_A Potassium channel subfa 97.4 4.7E-05 1.6E-09 71.7 1.8 24 367-391 90-113 (280)
48 3um7_A Potassium channel subfa 97.4 4.2E-05 1.4E-09 73.1 1.3 21 371-391 115-135 (309)
49 3ldc_A Calcium-gated potassium 97.1 7.2E-06 2.5E-10 63.0 -5.8 32 278-310 28-59 (82)
50 3vou_A ION transport 2 domain 97.0 9.9E-06 3.4E-10 69.2 -6.7 28 278-305 52-79 (148)
51 3ouf_A Potassium channel prote 96.9 1.4E-05 5E-10 63.3 -5.8 32 277-309 31-62 (97)
52 3rvy_A ION transport protein; 96.3 6.5E-05 2.2E-09 70.9 -7.2 40 265-304 167-208 (285)
53 4gx0_A TRKA domain protein; me 95.9 0.00021 7.1E-09 73.9 -6.0 33 278-311 51-83 (565)
54 1lnq_A MTHK channels, potassiu 95.6 0.00045 1.5E-08 66.5 -4.8 31 278-309 45-75 (336)
55 3sya_A G protein-activated inw 95.6 0.00052 1.8E-08 66.3 -4.3 27 275-301 88-114 (340)
56 1r29_A B-cell lymphoma 6 prote 95.1 0.0074 2.5E-07 49.3 2.0 81 33-121 31-116 (127)
57 2vpk_A Myoneurin; transcriptio 94.4 0.012 4.2E-07 47.1 1.5 77 33-120 24-106 (116)
58 3ga1_A Nucleus accumbens-assoc 94.2 0.018 6.3E-07 47.1 2.2 77 34-121 36-117 (129)
59 3spc_A Inward-rectifier K+ cha 94.0 0.0021 7.3E-08 62.1 -4.5 30 275-304 91-122 (343)
60 3ohu_A Transcription regulator 93.8 0.027 9.2E-07 45.7 2.4 78 34-120 35-117 (125)
61 3m5b_A Zinc finger and BTB dom 93.6 0.057 2E-06 43.7 4.1 75 34-121 33-108 (119)
62 2ppi_A Gigaxonin; BTB domain, 93.1 0.025 8.7E-07 47.4 1.1 81 34-120 50-135 (144)
63 2yy9_A Zinc finger and BTB dom 93.1 0.034 1.2E-06 46.0 1.9 78 33-121 27-108 (135)
64 3b84_A Zinc finger and BTB dom 92.3 0.039 1.3E-06 44.4 1.3 78 33-121 26-107 (119)
65 2ihc_A Transcription regulator 92.2 0.059 2E-06 43.7 2.2 80 33-121 31-115 (124)
66 2vkp_A BTB/POZ domain-containi 92.1 0.053 1.8E-06 42.6 1.7 81 33-121 10-98 (109)
67 2q81_A MIZ-1 protein; BTB/POZ 91.7 0.034 1.1E-06 44.9 0.1 77 33-121 29-109 (119)
68 3hve_A Gigaxonin; ubiquitin, c 90.8 0.11 3.6E-06 47.7 2.5 84 33-121 33-120 (256)
69 1buo_A POZ domain, protein (pr 90.6 0.072 2.5E-06 42.9 1.1 77 33-121 30-110 (121)
70 2z8h_A Transcription regulator 90.5 0.11 3.6E-06 43.0 2.1 80 33-121 38-122 (138)
71 3fkc_A Transcriptional regulat 90.3 0.076 2.6E-06 42.6 1.0 77 34-119 34-112 (116)
72 2if5_A Zinc finger and BTB dom 90.2 0.073 2.5E-06 42.7 0.8 82 33-121 27-112 (120)
73 3htm_A Speckle-type POZ protei 89.9 0.071 2.4E-06 45.4 0.5 81 34-121 37-121 (172)
74 4eoz_A Speckle-type POZ protei 87.4 0.06 2E-06 44.5 -1.7 81 33-120 27-111 (145)
75 3i3n_A Kelch-like protein 11; 85.0 0.57 2E-05 43.2 3.6 81 34-121 35-128 (279)
76 4dxw_A Navrh, ION transport pr 84.2 0.047 1.6E-06 49.3 -4.2 39 261-299 148-186 (229)
77 3hqi_A Speckle-type POZ protei 71.9 0.86 3E-05 42.7 0.3 82 33-121 176-261 (312)
78 4f4l_A ION transport protein; 67.4 0.72 2.5E-05 36.8 -1.2 53 338-390 5-57 (112)
79 1qg9_A Protein (sodium channel 25.9 33 0.0011 19.8 1.6 17 218-234 3-19 (26)
No 1
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=100.00 E-value=1.7e-64 Score=520.84 Aligned_cols=335 Identities=57% Similarity=0.932 Sum_probs=279.5
Q ss_pred CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394 27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD 106 (391)
Q Consensus 27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~ 106 (391)
.++.+++|+|||||++|+|+++||+|+|+|+|+++.++.++|+++++||||||||++|++||||||+||++++|+++|.+
T Consensus 47 ~~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~~ 126 (514)
T 2r9r_B 47 DHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD 126 (514)
T ss_dssp ----CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCHH
T ss_pred cCCCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccHH
Confidence 45577899999999999999999999999999998887889999999999999999999999999998899999999999
Q ss_pred hHHHHHhcCCCcchhcchhhhccccccccCCCCCchHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCcc
Q psy11394 107 VFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPE 186 (391)
Q Consensus 107 ~~~~E~~f~~l~~~~~e~~~~~e~~~~~~~~~~~~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~ 186 (391)
.|.+|++||+|+++.+++++++|+..++++++.|++++|+++|.++|+|.||.+|++|+++++++|++|++++|++|+|+
T Consensus 127 ~~~~E~~f~~i~~~~~~~~~~~e~~~~~~~~~~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~ 206 (514)
T 2r9r_B 127 IFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPI 206 (514)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCCCCCCCCCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCCCHHHHhhhhhhhhccccccccCchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999999999888877777778899999999999999999999999999999999999999999999998
Q ss_pred ccccccccccC-------CCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy11394 187 FKHYKVFNTTT-------NGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIYVHVLIPILMY 252 (391)
Q Consensus 187 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~iiDll~ilp~~ 252 (391)
++..+...... +.+.....+......++.++|.+|+++|++|+++|++ |++++||++|+++++|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~ 286 (514)
T 2r9r_B 207 FRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYY 286 (514)
T ss_dssp HHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHH
Confidence 75421000000 0000000112235678999999999999999999999 899999999999999999
Q ss_pred HHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhccccccc
Q psy11394 253 IFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSI 332 (391)
Q Consensus 253 ~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l 332 (391)
+.++..... .....+.+. ..++++ +|.+|++ |++|+.|+.+++ + .+..++
T Consensus 287 i~l~~~~~~---------~~~~~~~~~-----~~~lrv-------lRllRvl--RilkL~r~~~~l-~------~l~~tl 336 (514)
T 2r9r_B 287 VTIFLTESN---------KSVLQFQNV-----RRVVQI-------FRIMRIL--RIFKLSRHSKGL-Q------ILGQTL 336 (514)
T ss_dssp HHHHHHHTS---------CSHHHHHTT-----HHHHHH-------HHHHGGG--GGGGGGGSCHHH-H------HHHHHH
T ss_pred HHHHhhhcc---------ccchhhhhH-----HHHHHH-------HHHHHHH--HHHHHhhhhhHH-H------HHHHHH
Confidence 887653210 000000000 123334 7888888 999999999999 8 888888
Q ss_pred CccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 333 PDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 333 ~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.++.+.++.++++++++++++|+++|+.|...++.+|.++++|+||+++|||||||||+
T Consensus 337 ~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi 395 (514)
T 2r9r_B 337 KASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395 (514)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCC
Confidence 89999998888888888899999999999887888999999999999999999999996
No 2
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=99.97 E-value=1.1e-32 Score=222.36 Aligned_cols=99 Identities=86% Similarity=1.430 Sum_probs=93.6
Q ss_pred ceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHH
Q psy11394 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE 111 (391)
Q Consensus 32 ~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E 111 (391)
++|+|||||++|+|+++||+++|+|+|+++.++..+++++++||||||||++|++||||||+||++++|+++|.+.|.+|
T Consensus 1 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E 80 (100)
T 1t1d_A 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE 80 (100)
T ss_dssp CEEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred CEEEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence 58999999999999999999999999999887777899999999999999999999999998679999999999999999
Q ss_pred HhcCCCcchhcchhhhccc
Q psy11394 112 IKFYELGDVATNKFREDEG 130 (391)
Q Consensus 112 ~~f~~l~~~~~e~~~~~e~ 130 (391)
|+||+|++..+++++++|+
T Consensus 81 a~fy~i~~~~~~~~~~~eg 99 (100)
T 1t1d_A 81 IKFYELGENAFERYREDEG 99 (100)
T ss_dssp HHHTTCCHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHhcC
Confidence 9999999999999887764
No 3
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.96 E-value=7.1e-30 Score=211.28 Aligned_cols=95 Identities=39% Similarity=0.654 Sum_probs=89.2
Q ss_pred CCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHH
Q psy11394 30 FCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFS 109 (391)
Q Consensus 30 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~ 109 (391)
.+++|+|||||++|+|+++||+++|+|+|+++.+....+++++++|||||||++|++||||||+ |++++|+++|...|+
T Consensus 3 ~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~-G~l~~p~~~~~~~~~ 81 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRS-GKLHYPTDVCGPLFE 81 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHH-SCBCCCSSSCHHHHH
T ss_pred CCCEEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcC-CCCCCCCcccHHHHH
Confidence 5689999999999999999999999999999987777788999999999999999999999999 899999999999999
Q ss_pred HHHhcCCCcchhcchh
Q psy11394 110 EEIKFYELGDVATNKF 125 (391)
Q Consensus 110 ~E~~f~~l~~~~~e~~ 125 (391)
+||+||+|++..++.+
T Consensus 82 ~Ea~fy~i~~~~l~~C 97 (115)
T 3kvt_A 82 EELEFWGLDSNQVEPC 97 (115)
T ss_dssp HHHHHHTCCGGGBCGG
T ss_pred HHHHHhCCChHHHHHH
Confidence 9999999999988754
No 4
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=99.95 E-value=5.7e-29 Score=208.45 Aligned_cols=97 Identities=33% Similarity=0.629 Sum_probs=86.9
Q ss_pred CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394 27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD 106 (391)
Q Consensus 27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~ 106 (391)
....+++|+|||||++|+|+++||+++|+|+|++ ..+...+++++++|||||||++|++||||||+ |++++|+++|..
T Consensus 8 ~~~~~~~V~LNVGG~~F~t~~~TL~~~p~S~L~~-~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~-G~l~~p~~~~~~ 85 (124)
T 1s1g_A 8 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT-GKLHYPRYECIS 85 (124)
T ss_dssp ----CCEEEEEETTEEEEEEHHHHTTSTTSSTTS-SGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH-SCBCCCTTSCHH
T ss_pred CCCCCCEEEEEeCCEEEEEeHHHHhcCCCceecc-cCCcccccCCCCcEEEcCChHHHHHHHHHHhc-CCCCCCCCcCHH
Confidence 3456789999999999999999999999999998 44556789999999999999999999999999 899999999999
Q ss_pred hHHHHHhcCCCcchhcchh
Q psy11394 107 VFSEEIKFYELGDVATNKF 125 (391)
Q Consensus 107 ~~~~E~~f~~l~~~~~e~~ 125 (391)
.|++||+||+|++..++++
T Consensus 86 ~l~~Ea~fy~i~~l~l~~c 104 (124)
T 1s1g_A 86 AYDDELAFYGILPEIIGDC 104 (124)
T ss_dssp HHHHHHHHTTCCGGGBCHH
T ss_pred HHHHHHHHcCCChHHHHHH
Confidence 9999999999999887754
No 5
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=99.95 E-value=1.3e-28 Score=210.24 Aligned_cols=97 Identities=33% Similarity=0.629 Sum_probs=89.1
Q ss_pred CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394 27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD 106 (391)
Q Consensus 27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~ 106 (391)
....+++|+|||||++|+|+++||+++|+|+|++ ..+...+++++++|||||||++|++||||||+ |++++|+++|..
T Consensus 30 ~~~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~-~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~-G~l~~p~~~~~~ 107 (140)
T 2nz0_B 30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT-GKLHYPRYECIS 107 (140)
T ss_dssp CTTCCCEEEEEETTEEEEEEHHHHHTCTTSTTTS-GGGGGSEETTTTEEEECSCHHHHHHHHHHHHH-SSBCCCTTSCHH
T ss_pred cCCCCCEEEEEECCEEEEeeHHHHhcCCCeeecc-cCCcccccCCCCeEEEeCCcHHHHHHHHHHhc-CCcCCCCCcCHH
Confidence 3456789999999999999999999999999998 44556788999999999999999999999999 899999999999
Q ss_pred hHHHHHhcCCCcchhcchh
Q psy11394 107 VFSEEIKFYELGDVATNKF 125 (391)
Q Consensus 107 ~~~~E~~f~~l~~~~~e~~ 125 (391)
.|++||+||+|++..++.+
T Consensus 108 ~l~eEa~fy~i~~l~l~~C 126 (140)
T 2nz0_B 108 AYDDELAFYGILPEIIGDC 126 (140)
T ss_dssp HHHHHHHHHTCCGGGBCTT
T ss_pred HHHHHHHHcCCChHHHHHH
Confidence 9999999999999888764
No 6
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=99.95 E-value=1.8e-28 Score=199.93 Aligned_cols=91 Identities=36% Similarity=0.695 Sum_probs=84.1
Q ss_pred eEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI 112 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~ 112 (391)
+|+|||||++|+|+++||+++|+|+|++ ..+...+++++++|||||||++|++||||||+ |++++|+++|...|.+||
T Consensus 1 ~V~LNVGG~~f~t~~~TL~~~p~s~L~~-~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~-g~l~~p~~~~~~~l~~Ea 78 (105)
T 1nn7_A 1 LIVLNVSGTRFQTWQDTLERYPDTLLGS-SERDFFYHPETQQYFFDRDPDIFRHILNFYRT-GKLHYPRHECISAYDEEL 78 (105)
T ss_dssp CEEEEETTEEEEECHHHHHTSCSSSTTS-GGGGGGEEGGGTEEEECSCTTTHHHHHHHHHH-SCBCCCTTSCHHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhcCCCccccc-cCCcccccCCCCcEEEeCCcHHHHHHHHHHhc-CCCCCCCCcCHHHHHHHH
Confidence 5899999999999999999999999998 34455788899999999999999999999999 899999999999999999
Q ss_pred hcCCCcchhcchh
Q psy11394 113 KFYELGDVATNKF 125 (391)
Q Consensus 113 ~f~~l~~~~~e~~ 125 (391)
+||+|++..++++
T Consensus 79 ~fy~i~~l~~~~c 91 (105)
T 1nn7_A 79 AFFGLIPEIIGDC 91 (105)
T ss_dssp HHHTCCSCCBCHH
T ss_pred HHcCCCHHHHHHH
Confidence 9999999887653
No 7
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.93 E-value=4.5e-27 Score=192.65 Aligned_cols=93 Identities=24% Similarity=0.354 Sum_probs=80.5
Q ss_pred CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCC---CCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCC
Q psy11394 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF---DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP 104 (391)
Q Consensus 28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~---~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~ 104 (391)
++.+++|+|||||++|+|+++||+++|+|+|+++.+....+ .+++++|||||||++|++||||||+ |++++|+++|
T Consensus 2 g~~~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~-g~l~~p~~~~ 80 (107)
T 3drz_A 2 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRH-GKLVINKDLA 80 (107)
T ss_dssp ---CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHH-SCCCCCTTSC
T ss_pred CCCCCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCC-CeeCCCCCCC
Confidence 45678999999999999999999999999999886533221 2377899999999999999999999 8999999999
Q ss_pred HHhHHHHHhcCCCcchh
Q psy11394 105 LDVFSEEIKFYELGDVA 121 (391)
Q Consensus 105 ~~~~~~E~~f~~l~~~~ 121 (391)
...+.+||+||+|++..
T Consensus 81 ~~~l~~Ea~fy~l~~L~ 97 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLI 97 (107)
T ss_dssp HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 99999999999998753
No 8
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=99.91 E-value=3.1e-25 Score=198.90 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=83.3
Q ss_pred CCCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCC---CCCCceeeecCCCCChHHHHhhhhcCCeeecCCC
Q psy11394 26 HDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF---DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVN 102 (391)
Q Consensus 26 ~~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~---~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~ 102 (391)
..++.+++|+|||||++|+|+++||.++|+|+|+++......+ .+++++|||||||++|++||||||+ |++++|++
T Consensus 6 ~~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRt-G~L~lP~~ 84 (202)
T 3drx_A 6 RPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRH-GKLVINKD 84 (202)
T ss_dssp CSSCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHH-SCCCCCTT
T ss_pred CCCCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcC-CccCCCCC
Confidence 3456778999999999999999999999999999886543222 2367899999999999999999999 89999999
Q ss_pred CCHHhHHHHHhcCCCcchh
Q psy11394 103 VPLDVFSEEIKFYELGDVA 121 (391)
Q Consensus 103 ~~~~~~~~E~~f~~l~~~~ 121 (391)
+|...|.+||+||+|++..
T Consensus 85 ~~~~~l~eEA~FygL~~Lv 103 (202)
T 3drx_A 85 LAEEGVLEEAEFYNITSLI 103 (202)
T ss_dssp SCHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHCCcHHHH
Confidence 9999999999999998853
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.89 E-value=1.2e-25 Score=215.02 Aligned_cols=179 Identities=9% Similarity=0.116 Sum_probs=152.9
Q ss_pred hHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhh
Q psy11394 142 HEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFL 221 (391)
Q Consensus 142 ~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~ 221 (391)
+++|+++|.++++ +.++.+++++|++|++.++++|.++... .....+.++|.+|
T Consensus 17 ~~~r~~~~~i~~~-------~~f~~~i~~li~l~~i~~~~~~~~~~~~-------------------~~~~~l~~~e~~~ 70 (285)
T 3rvy_A 17 SHMYLRITNIVES-------SFFTKFIIYLIVLNGITMGLETSKTFMQ-------------------SFGVYTTLFNQIV 70 (285)
T ss_dssp --CHHHHHHHHTS-------HHHHHHHHHHHHHHHHHHHHTTCTTHHH-------------------HSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC-------HHHHHHHHHHHHHHHHHHHHhcCcccch-------------------HHHHHHHHHHHHH
Confidence 4489999999986 4699999999999999999999875443 2345788999999
Q ss_pred hhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecc
Q psy11394 222 IMPSLYCLLTSLL-----LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYG 296 (391)
Q Consensus 222 ~~~F~~E~llRl~-----f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGyg 296 (391)
+++|++|+++|++ |++++||++|+++++|.++... . +..
T Consensus 71 ~~iF~~E~~lrl~~~~~~y~~~~wn~~Dl~~v~~~~i~~~------------------------~------------~~~ 114 (285)
T 3rvy_A 71 ITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTS------------------------S------------GFE 114 (285)
T ss_dssp HHHHHHHHHHHHHTTGGGGGGCHHHHHHHHHHHHHHSCSS------------------------S------------SCT
T ss_pred HHHHHHHHHHHHHHHhHHHHcCChHHhHHHHHHHHHHccc------------------------c------------hHH
Confidence 9999999999999 9999999999999999764320 0 011
Q ss_pred cceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhh
Q psy11394 297 DMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAF 376 (391)
Q Consensus 297 d~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~al 376 (391)
-+|.+|++ |++|+.|..+++ + .+..++.++.+.++.++++++++++++|.+.+.++++.++.+|+++++|+
T Consensus 115 ~lr~~Ril--R~lrl~~~~~~l-~------~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~ 185 (285)
T 3rvy_A 115 ILRVLRVL--RLFRLVTAVPQM-R------KIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESF 185 (285)
T ss_dssp HHHHHGGG--GGGHHHHSSTTH-H------HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHH
Confidence 17888888 999999999998 7 78888889999999999999999999999888888877777899999999
Q ss_pred hhhhhhhcccccC-CC
Q psy11394 377 WWAVVTMTTVGYG-DM 391 (391)
Q Consensus 377 ywaivT~tTVGYG-Di 391 (391)
||+++|+||+||| |+
T Consensus 186 ~~~~~~~T~~g~~~di 201 (285)
T 3rvy_A 186 YTLFQVMTLESWSMGI 201 (285)
T ss_dssp HHHHHHHTTTTCCCCC
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999999999 86
No 10
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.87 E-value=1.8e-24 Score=212.91 Aligned_cols=171 Identities=23% Similarity=0.289 Sum_probs=137.8
Q ss_pred ccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHH
Q psy11394 153 EYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTS 232 (391)
Q Consensus 153 e~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llR 232 (391)
++|.| ++++.+++++|++|+++++++|.|+.+. .....+.+++.++.+.|++|+++|
T Consensus 3 ~~p~s----~~f~~~~~~~i~ls~~~~~~~t~~~~~~-------------------~~~~~~~~~~~~~~~~f~~e~~~r 59 (355)
T 3beh_A 3 VLPFL----RIYAPLNAVLAAPGLLAVAALTIPDMSG-------------------RSRLALAALLAVIWGAYLLQLAAT 59 (355)
T ss_dssp ----C----CSSSSHHHHHHHHHHHHHHHHTSSSCCH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchh----HHHHHHHHHHHHHHHHHHHHHcccchhh-------------------hHHHHHHHHHhHHHHHHHHHHHHh
Confidence 35654 5789999999999999999999987654 122345677778878899999999
Q ss_pred HH-------HHHHHHHHHHHHHH-HHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccc
Q psy11394 233 LL-------LYSVVMIYVHVLIP-ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFF 304 (391)
Q Consensus 233 l~-------f~~~~~~iiDll~i-lp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~l 304 (391)
++ |+++++|++|++++ +|++..+.. |....|.+|++
T Consensus 60 ~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~~~------------------------------------~~~~~r~lr~~ 103 (355)
T 3beh_A 60 LLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLD------------------------------------GSPDWSLYCAV 103 (355)
T ss_dssp HHCCCSCSSCCCHHHHHHHHHHHHHHHHHHHSC------------------------------------CSGGGGGGGGG
T ss_pred cccccccceeccCcchHHHHHHHHHHHHHHHhc------------------------------------cchhHHHHHHH
Confidence 98 67799999999999 587654310 00116888888
Q ss_pred cceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhc
Q psy11394 305 ERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMT 384 (391)
Q Consensus 305 g~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~t 384 (391)
|++|+.|+.+++ + .+.+++.++.+.+..+++.++++++++|+++|.+|+..++++|.++++|+||+++|||
T Consensus 104 --R~lrl~r~~~~~-~------~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~t 174 (355)
T 3beh_A 104 --WLLKPLRDSTFF-P------VLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLS 174 (355)
T ss_dssp --GGSHHHHTCSSH-H------HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhhee
Confidence 999999998888 7 7777777778888888888888889999999999998877789999999999999999
Q ss_pred ccccCCC
Q psy11394 385 TVGYGDM 391 (391)
Q Consensus 385 TVGYGDi 391 (391)
||||||+
T Consensus 175 tvGygd~ 181 (355)
T 3beh_A 175 TTGYGDT 181 (355)
T ss_dssp TCCCSSS
T ss_pred ecCCCCC
Confidence 9999996
No 11
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=3.4e-24 Score=197.64 Aligned_cols=170 Identities=20% Similarity=0.244 Sum_probs=120.2
Q ss_pred hhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------H
Q psy11394 163 VVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-------L 235 (391)
Q Consensus 163 ~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f 235 (391)
.++.+++++|++|++.+++|+.++.+. .....+.++|.+|.++|++|+++|++ |
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~-------------------~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y 69 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGY 69 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTT-------------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCh-------------------hhhhHHHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 489999999999999999999876543 35578899999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHH
Q psy11394 236 YSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR 315 (391)
Q Consensus 236 ~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~ 315 (391)
+++ |++|+++++|+++....... .... ..+|.+|++ |++|+.|..
T Consensus 70 ~~~--~iiDllailP~~~~~~~~~~---------------~~~~----------------~~lr~lRll--RllR~~r~~ 114 (223)
T 1orq_C 70 VKK--TLYEIPALVPAGLLALIEGH---------------LAGL----------------GLFRLVRLL--RFLRILLII 114 (223)
T ss_dssp HHH--HHHHCTTHHHHHHHHHHHHH---------------HHTT----------------TCHHHHHHH--HHHHHHHHH
T ss_pred HHH--hHHHHHHHHHHHHHHHHhcc---------------hhHH----------------HHHHHHHHH--HHHHHHHHH
Confidence 887 99999999999876531100 0000 003444444 444444433
Q ss_pred HHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 316 KFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 316 ~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+.. +... ..+...++. ..+..+++.+++.++++++++|.+|++.+++++.++++|+||+++|||||||||+
T Consensus 115 ~~~-~~~~--~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi 185 (223)
T 1orq_C 115 SRG-SKFL--SAIADAADK--IRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 185 (223)
T ss_dssp HSC-SSHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSS
T ss_pred HHH-HHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCC
Confidence 211 1000 012222211 2344455666667778888999999877778899999999999999999999996
No 12
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.79 E-value=3.9e-21 Score=177.91 Aligned_cols=168 Identities=10% Similarity=0.071 Sum_probs=140.1
Q ss_pred hhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH------
Q psy11394 161 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------ 234 (391)
Q Consensus 161 a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~------ 234 (391)
++.++.++.++|++|++.++++|+|..+. ....+..+|.+|+++|++|+++|++
T Consensus 11 ~~~f~~~i~~~I~ln~i~l~~~~~~~~~~--------------------~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~ 70 (229)
T 4dxw_A 11 NRIFQFTVVSIIILNAVLIGATTYELDPL--------------------FLETIHLLDYGITIFFVIEILIRFIGEKQKA 70 (229)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTCCSSSCHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CchHHHHHHHHHHHHHHHHHHccCCCChH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchh
Confidence 36799999999999999999999763332 3356789999999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehh
Q psy11394 235 -LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSR 313 (391)
Q Consensus 235 -f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r 313 (391)
|++++||++|++++++.++.... + ...++ +|.+|++ |++|+.|
T Consensus 71 ~y~~~~wni~D~~~v~~~~i~~~~--------------------~-------~~~~~-------lr~~Ril--R~lrl~~ 114 (229)
T 4dxw_A 71 DFFKSGWNIFDTVIVAISLIPIPN--------------------N-------SSFLV-------LRLLRIF--RVLRLIS 114 (229)
T ss_dssp ----CHHHHHHHHHHHHTTCC-----------------------------------C-------CTTHHHH--HHTTHHH
T ss_pred HHhcCCcHHHHHHHHHHHHhhcCc--------------------c-------HHHHH-------HHHHHHH--HHHHHHH
Confidence 99999999999999886643210 0 01122 7889999 9999999
Q ss_pred HHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 314 LRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 314 ~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+.+++ + .+.+++.++.+.++.+.+++++.++++|.+.+.++++.++++|+++++|+||.+.++||.||+|+
T Consensus 115 ~~~~l-~------~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i 185 (229)
T 4dxw_A 115 VIPEL-K------QIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETV 185 (229)
T ss_dssp HCHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHH
T ss_pred HhHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHH
Confidence 99999 8 88899999999999999999999999999988888888888999999999999999999999984
No 13
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.44 E-value=1.5e-14 Score=125.61 Aligned_cols=49 Identities=39% Similarity=0.609 Sum_probs=41.6
Q ss_pred hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
++.+.+.+++++.++|.+|...++++|.++++|+||+++|+|||||||+
T Consensus 56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi 104 (155)
T 2a9h_A 56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCC
Confidence 3444455667788889999888888999999999999999999999996
No 14
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.41 E-value=1.3e-15 Score=129.07 Aligned_cols=118 Identities=11% Similarity=0.043 Sum_probs=94.7
Q ss_pred hhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH------
Q psy11394 161 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------ 234 (391)
Q Consensus 161 a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~------ 234 (391)
++.++.+++++|++|++.+++||+|+.+. .....+.++|.+|+++|++||++|++
T Consensus 5 ~~~f~~~i~~lIlls~~~~~~et~~~~~~-------------------~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~ 65 (132)
T 1ors_C 5 HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPA 65 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhhhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 46799999999999999999999986654 13356789999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehh
Q psy11394 235 -LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSR 313 (391)
Q Consensus 235 -f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r 313 (391)
|++ ||++|+++++|+++.+... + . ..++++ +|.+|++ |++|+.|
T Consensus 66 ~y~~--~niiDllailp~~~~~~~~--~-------------~---------l~~lr~-------lRllRv~--Rvlkl~r 110 (132)
T 1ors_C 66 GYVK--KTLYEIPALVPAGLLALIE--G-------------H---------LAGLGL-------FRLVRLL--RFLRILL 110 (132)
T ss_dssp TTTT--TCGGGTGGGSCHHHHHHHH--H-------------H---------HHHTTC-------HHHHHHH--HHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhc--c-------------h---------HHHHHH-------HHHHHHH--HHHHHHH
Confidence 777 9999999999999877530 0 0 012223 6777888 8899999
Q ss_pred HHHHHHHHhhhhcccccccCccchhh
Q psy11394 314 LRKFLLQEYSRCFLVGKSIPDAFWWA 339 (391)
Q Consensus 314 ~~~~l~~~~~~~~~l~~~l~~s~~~l 339 (391)
+.+++ + .+.+++.++.+++
T Consensus 111 ~~~~l-~------~l~~~l~~s~~~l 129 (132)
T 1ors_C 111 IISRG-S------KFLSAIADAADKL 129 (132)
T ss_dssp HHHHH-H------HHHHHHHHHHHHH
T ss_pred HhhHH-H------HHHHHHHHHHHHh
Confidence 99999 8 8888888777765
No 15
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.32 E-value=2.2e-14 Score=137.50 Aligned_cols=105 Identities=21% Similarity=0.325 Sum_probs=61.7
Q ss_pred cccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhh---------------hhc-cc-----ccccCccc
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYS---------------RCF-LV-----GKSIPDAF 336 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~---------------~~~-~l-----~~~l~~s~ 336 (391)
++++++||+++|+|||||||+.|.+..| |++...-..-++ -.+. ... .+ ........
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~g-k~~~i~~~l~Gi-~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~~ 192 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAG-RLFCIFYALVGI-PLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPEL 192 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CCH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccc-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchhH
Confidence 7889999999999999999999999998 887663333222 1000 000 00 00001111
Q ss_pred hhhh----hhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 337 WWAV----VTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 337 ~~l~----~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
..+. .+++.+++.+++.+.+.+..|. -++.||+||+++|+|||||||+
T Consensus 193 ~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~-------~~~~da~y~~~vTltTvGyGd~ 244 (309)
T 3um7_A 193 VRVLSAMLFLLIGCLLFVLTPTFVFCYMED-------WSKLEAIYFVIVTLTTVGFGDY 244 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhheeccccCCC
Confidence 1111 1111112222223333445552 4788999999999999999996
No 16
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.32 E-value=1.8e-13 Score=117.84 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhh
Q psy11394 141 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETF 220 (391)
Q Consensus 141 ~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v 220 (391)
.+++|+++|+++|+|. ++.++.+++++|++.++++|.++.+. .....+..+|.+
T Consensus 7 ~~~~~~~~~~~~e~~~-------f~~~i~~lil~sv~~v~~et~~~i~~-------------------~~~~~~~~id~~ 60 (147)
T 2kyh_A 7 LGGRVRNIGDVMEHPL-------VELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLI 60 (147)
T ss_dssp CSHHHHHHHHHHTCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCH-------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-------HHHHHHHHHHHHHHHHHHHHhHhhch-------------------hHHHHHHHHHHH
Confidence 5679999999999864 99999999999999999999876543 123457899999
Q ss_pred hhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy11394 221 LIMPSLYCLLTSLL-------LYSVVMIYVHVLIPILMYIFAG 256 (391)
Q Consensus 221 ~~~~F~~E~llRl~-------f~~~~~~iiDll~ilp~~~~~~ 256 (391)
|+++|++||++|++ |+++ |++|+++++|++..+.
T Consensus 61 ~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~ 101 (147)
T 2kyh_A 61 LVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLAL 101 (147)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 99999999999999 8887 9999999999997764
No 17
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.27 E-value=4.8e-14 Score=133.18 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=64.3
Q ss_pred ccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHh-------h-hhccc-----ccccC------cc--
Q psy11394 277 KSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEY-------S-RCFLV-----GKSIP------DA-- 335 (391)
Q Consensus 277 ~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~-------~-~~~~l-----~~~l~------~s-- 335 (391)
-++++++||+++|+|||||||+.|.+..| |++...-..-++ -.. . +.... ...+. +.
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~G-k~f~~~~~l~Gi-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGG-KAFCIIYSVIGI-PFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVV 169 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSTTTTTC------CCHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchh-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 38899999999999999999999999998 887664322222 100 0 00000 00000 00
Q ss_pred -chhhhhhhhhhhhhhhcccceee-eeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 336 -FWWAVVTMTTVGYGVVLFSSAVY-FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 336 -~~~l~~~~~~l~i~i~~~a~~~y-~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.....++.+.+.++.++.+.++| .+|.+ -++.||+||+++|+|||||||+
T Consensus 170 ~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~------~s~~da~y~~~iTltTvGyGD~ 221 (280)
T 3ukm_A 170 AIVHAVLLGFVTVSCFFFIPAAVFSVLEDD------WNFLESFYFCFISLSTIGLGDY 221 (280)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHSSS------CCHHHHHHHHHHHHTTCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcC------CchhhhhhheeeeeecccCCCC
Confidence 01111222233333344444444 45632 4788999999999999999996
No 18
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.23 E-value=1.2e-12 Score=109.18 Aligned_cols=49 Identities=33% Similarity=0.513 Sum_probs=41.1
Q ss_pred hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+..+.+.+++++.++|.+|++.+++++.++.||+||+++|+|||||||+
T Consensus 33 ~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi 81 (122)
T 2ih3_C 33 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDL 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCC
Confidence 3344455566777888899888888899999999999999999999996
No 19
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.00 E-value=9e-11 Score=94.79 Aligned_cols=53 Identities=38% Similarity=0.497 Sum_probs=44.0
Q ss_pred hhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 339 AVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 339 l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+...++.+++.+++++.+++.+|+..+++.+.++.+|+||+++|+|||||||+
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi 60 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDR 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCC
Confidence 33345555566677788888999888888899999999999999999999996
No 20
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.91 E-value=2.7e-10 Score=96.93 Aligned_cols=55 Identities=33% Similarity=0.474 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 337 WWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 337 ~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+.+...++.+++.+++++.++|..|.+.+++.+.++.+|+||+++|+|||||||+
T Consensus 6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~ 60 (139)
T 3eff_K 6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60 (139)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCC
Confidence 3445556666677778888899999988888899999999999999999999996
No 21
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.88 E-value=3.2e-10 Score=99.49 Aligned_cols=51 Identities=33% Similarity=0.551 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 341 VTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 341 ~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.+++.+++++++++.++|..|.+.+++.+.++.+|+||+++|+|||||||+
T Consensus 37 ~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi 87 (166)
T 3pjs_K 37 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87 (166)
T ss_dssp TTSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCC
Confidence 334445556666777888889887777889999999999999999999996
No 22
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=98.81 E-value=8.2e-10 Score=93.79 Aligned_cols=44 Identities=41% Similarity=0.796 Sum_probs=33.8
Q ss_pred hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
++++++++++++..+++.|. .+.+|+||+||+++|||||||||+
T Consensus 20 l~~~~~~~~~~~~~~~~~e~-----~~~~~~~a~y~~~~T~tTvGyGDi 63 (137)
T 4h33_A 20 LMIFVLLVIIIPVPMVFIEP-----EINNYPDALWWAIVTATTVGYGDI 63 (137)
T ss_dssp HHHHHHHHHHTHHHHHHHCS-----SCCSHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcccCCCC
Confidence 33444445566666777764 467899999999999999999996
No 23
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.59 E-value=9.5e-09 Score=99.57 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=47.8
Q ss_pred ccccCccchhhhhhhhhhhhhhhcccceeeeeccC-CCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 329 GKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAG-SENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 329 ~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~-~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
...+..+.+.+..+++++.+++.+++.++|++|.+ .++..+.+|.+|+||+++|+|||||||+
T Consensus 53 ~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi 116 (333)
T 1p7b_A 53 YWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116 (333)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCC
Confidence 34556677777777766666666666667888765 2344678999999999999999999996
No 24
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.53 E-value=1.5e-08 Score=96.96 Aligned_cols=60 Identities=32% Similarity=0.419 Sum_probs=41.8
Q ss_pred ccCccchhhhhhhhhhhh-hhhcccceeeeecc-CCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 331 SIPDAFWWAVVTMTTVGY-GVVLFSSAVYFAEA-GSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 331 ~l~~s~~~l~~~~~~l~i-~i~~~a~~~y~~E~-~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.+..+.+.+.++++++.+ ..+++|.+ |+++. ..++..+.++.+|+||+++|+|||||||+
T Consensus 41 ~l~~~~~~ll~~~~~~~~~~~l~fa~l-y~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi 102 (301)
T 1xl4_A 41 LLTVSWPVFITLITGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102 (301)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHH-HHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCCCCcCCHHHHHHHhhhheeccCCCCC
Confidence 344555665555444433 33666776 55553 34455789999999999999999999996
No 25
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.45 E-value=3.1e-08 Score=78.90 Aligned_cols=43 Identities=33% Similarity=0.526 Sum_probs=30.9
Q ss_pred hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.+.+++++++.+.+.|..+++ .++.||+||+++|+|||||||+
T Consensus 10 ~~~~~~~~~~~g~~~~~~~e~------~~~~~a~yf~~~T~tTvGyGdi 52 (97)
T 3ouf_A 10 LFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDF 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCC
Confidence 334444445555666654432 5789999999999999999996
No 26
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.43 E-value=3.7e-08 Score=75.97 Aligned_cols=32 Identities=38% Similarity=0.702 Sum_probs=25.5
Q ss_pred ccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 353 ~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.+...+..|+ .++.||+||+++|+|||||||+
T Consensus 17 g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi 48 (82)
T 3ldc_A 17 GTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDY 48 (82)
T ss_dssp HHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHhc-------CCHHHHHHHHHHHhcccCCCCC
Confidence 3334446664 3899999999999999999996
No 27
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.41 E-value=2.9e-08 Score=81.50 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=30.4
Q ss_pred hhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 344 TTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 344 ~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+.++++.++++.++|..+++ .++.||+||+++|+|||||||+
T Consensus 28 ~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~T~tTvGyGdi 69 (114)
T 2q67_A 28 FVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNF 69 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHhcceeCCCC
Confidence 33334445556666654432 4889999999999999999996
No 28
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=98.40 E-value=4.3e-08 Score=84.13 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=30.9
Q ss_pred hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
.+.+++++++++.++|....+ .++.||+||+++|+|||||||+
T Consensus 30 ~~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~t~tTvGyGd~ 72 (148)
T 3vou_A 30 LFVLTFLTLTSGTIFYSTVEG------LRPLDALYFSVVTLTTVGDGNF 72 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCC
Confidence 344444455556666654332 4899999999999999999996
No 29
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=98.37 E-value=4.8e-09 Score=90.88 Aligned_cols=46 Identities=41% Similarity=0.652 Sum_probs=40.8
Q ss_pred hhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394 260 FSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 260 ~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
.+..+|++|+..+++.|.++++++||+++|+|||||||+.|.+..|
T Consensus 66 ~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g 111 (155)
T 2a9h_A 66 GSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG 111 (155)
T ss_dssp HHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH
T ss_pred HHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhH
Confidence 3445677888888889999999999999999999999999999885
No 30
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.35 E-value=5.9e-08 Score=93.62 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=32.1
Q ss_pred hhhhcccceeeeeccCCCCCCCC--CcchhhhhhhhhhcccccCCC
Q psy11394 348 YGVVLFSSAVYFAEAGSENSFFK--SIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 348 i~i~~~a~~~y~~E~~~~~~~f~--s~~~alywaivT~tTVGYGDi 391 (391)
+.++++| .++.|.+....++. ++.+|+||+++|||||||||+
T Consensus 55 ~~~~~fa--~~~~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi 98 (321)
T 2qks_A 55 LLNTAFA--TLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM 98 (321)
T ss_dssp HHHHHHH--HHHHTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHH--HHHHcCCccccCcCCcchhheeeeeeEEeccccCCCc
Confidence 3444555 22566655556777 999999999999999999996
No 31
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.32 E-value=1.7e-08 Score=81.28 Aligned_cols=48 Identities=38% Similarity=0.486 Sum_probs=40.5
Q ss_pred eEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394 263 TVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR 311 (391)
Q Consensus 263 ~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL 311 (391)
..|+.|+..+++.+.++.+++||+++|+|||||||+.|.+..| |++-.
T Consensus 25 ~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-r~~~~ 72 (103)
T 2k1e_A 25 KAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG-RKVAE 72 (103)
T ss_dssp HHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC-THHHH
T ss_pred hhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH-HHHHH
Confidence 4456788778888999999999999999999999999999886 55433
No 32
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.28 E-value=5.3e-08 Score=100.02 Aligned_cols=97 Identities=42% Similarity=0.692 Sum_probs=67.2
Q ss_pred CCCChhHhhhhhhhhhHHHHHHH-----------------H---HH----------HHHHHHH-------HHHHHHHHHH
Q psy11394 209 DITDPFFLIETFLIMPSLYCLLT-----------------S---LL----------LYSVVMI-------YVHVLIPILM 251 (391)
Q Consensus 209 ~~~~~~~~ie~v~~~~F~~E~ll-----------------R---l~----------f~~~~~~-------iiDll~ilp~ 251 (391)
.+...++++|.++++.+.+++++ | ++ +.+..-. .+.-+..+.+
T Consensus 269 Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~ 348 (514)
T 2r9r_B 269 FFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIF 348 (514)
T ss_dssp STTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999988776542 2 22 1111001 1111222223
Q ss_pred HHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394 252 YIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 252 ~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
++.+++.+++..+|+.|...++..|.++++++||+++|||||||||+.|.+..|
T Consensus 349 ~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~g 402 (514)
T 2r9r_B 349 FLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 402 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHH
T ss_pred HHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcch
Confidence 333444556777788888888899999999999999999999999999999885
No 33
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=98.28 E-value=1.1e-08 Score=85.12 Aligned_cols=49 Identities=33% Similarity=0.561 Sum_probs=41.2
Q ss_pred hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeee
Q psy11394 261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFC 310 (391)
Q Consensus 261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Rilk 310 (391)
+...|+.|++.+++.+.++++++||+++|+|||||||+.|.+..| |++-
T Consensus 44 a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-r~~~ 92 (122)
T 2ih3_C 44 SYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG-RLVA 92 (122)
T ss_dssp HHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-HHHH
T ss_pred HHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH-HHHH
Confidence 334566788888888999999999999999999999999999885 4433
No 34
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=98.22 E-value=8.4e-08 Score=87.60 Aligned_cols=47 Identities=43% Similarity=0.622 Sum_probs=41.2
Q ss_pred hhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394 259 LFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 259 ~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
..+...|+.|++.+++.+.++++++||+++|||||||||+.|.+..|
T Consensus 146 ~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~ 192 (223)
T 1orq_C 146 YGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG 192 (223)
T ss_dssp HHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH
T ss_pred HHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH
Confidence 34556677888778888999999999999999999999999999885
No 35
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.11 E-value=4.3e-08 Score=83.18 Aligned_cols=47 Identities=34% Similarity=0.624 Sum_probs=40.0
Q ss_pred ceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394 262 STVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309 (391)
Q Consensus 262 ~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril 309 (391)
...|+.|+..+++.+.++.+++||+++|+|||||||+.|.+..| |++
T Consensus 24 ~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~-r~~ 70 (139)
T 3eff_K 24 YLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-RLV 70 (139)
T ss_dssp HHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH-HHH
T ss_pred HHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH-HHH
Confidence 34566788778888899999999999999999999999999885 443
No 36
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=98.07 E-value=4.5e-08 Score=82.97 Aligned_cols=30 Identities=50% Similarity=0.922 Sum_probs=28.0
Q ss_pred cccccccceeeEEEEEEeecccceeccccc
Q psy11394 276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 276 f~si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
+.++++++||+++|||||||||+.|.+..|
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g 70 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVTPIG 70 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHH
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCHhH
Confidence 568899999999999999999999999986
No 37
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.02 E-value=7.9e-07 Score=86.02 Aligned_cols=40 Identities=35% Similarity=0.748 Sum_probs=29.1
Q ss_pred hhhhhhhcccceee-eeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394 345 TVGYGVVLFSSAVY-FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 345 ~l~i~i~~~a~~~y-~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi 391 (391)
++++++++++.++| .+|. .++.+|+||+++|+|||||||+
T Consensus 25 ~~~~~~~~~~~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~ 65 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDY 65 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhhcccCCCC
Confidence 33334445555555 5553 3788999999999999999996
No 38
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.02 E-value=1.2e-07 Score=92.65 Aligned_cols=54 Identities=37% Similarity=0.652 Sum_probs=45.3
Q ss_pred HHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394 257 VVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR 311 (391)
Q Consensus 257 ~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL 311 (391)
+..++...|++|+..+++.|.++++++||+++|||||||||+.|.+..| |++-.
T Consensus 140 ~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~-~~~~~ 193 (355)
T 3beh_A 140 LFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG-RVLAG 193 (355)
T ss_dssp HHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH-HHHHH
T ss_pred HHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH-HHHHH
Confidence 3445566778888888888999999999999999999999999999886 65543
No 39
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=97.85 E-value=4.1e-07 Score=79.50 Aligned_cols=50 Identities=34% Similarity=0.591 Sum_probs=41.0
Q ss_pred hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394 261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR 311 (391)
Q Consensus 261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL 311 (391)
+...|+.|...+++.+.++.+++||+++|+|||||||+.|.+..| |++-.
T Consensus 50 a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~-r~~~~ 99 (166)
T 3pjs_K 50 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-RLVAV 99 (166)
T ss_dssp SSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTT-TTTTH
T ss_pred HHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhH-HHHHH
Confidence 335566777777788899999999999999999999999999886 44433
No 40
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=97.80 E-value=3.5e-06 Score=81.57 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCCCcchhhhhhhhhhcccccCCC
Q psy11394 368 FFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 368 ~f~s~~~alywaivT~tTVGYGDi 391 (391)
++.++.+|+||+++|+|||||||+
T Consensus 88 ~~~sf~~af~fSv~T~TTvGYGd~ 111 (340)
T 3sya_A 88 NLNGFVSAFLFSIETETTIGYGYR 111 (340)
T ss_dssp CCCSTTHHHHHHHHHHSCCCCSSS
T ss_pred cccCHHHHHhhhheeeeeecCCCc
Confidence 578999999999999999999996
No 41
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=97.76 E-value=3.3e-06 Score=87.45 Aligned_cols=22 Identities=36% Similarity=0.886 Sum_probs=20.6
Q ss_pred CCcchhhhhhhhhhcccccCCC
Q psy11394 370 KSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 370 ~s~~~alywaivT~tTVGYGDi 391 (391)
.++.+|+||+++|+|||||||+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~ 71 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDI 71 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSS
T ss_pred CchhhhhheeeeeeeeecCCCc
Confidence 3889999999999999999996
No 42
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.64 E-value=8.5e-06 Score=78.94 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.5
Q ss_pred CCCCcchhhhhhhhhhcccccCCC
Q psy11394 368 FFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 368 ~f~s~~~alywaivT~tTVGYGDi 391 (391)
++.++.+|+||+++|+|||||||+
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~ 114 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFR 114 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSS
T ss_pred ccCCHHHHhheeeeeeEeecCCCc
Confidence 578999999999999999999996
No 43
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=97.60 E-value=1.8e-06 Score=83.59 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred ceEEEEeeC-CCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHH
Q psy11394 262 STVYFAEAG-SDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRK 316 (391)
Q Consensus 262 ~~~y~~e~~-~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~ 316 (391)
+++|++|.+ .++..+.++.+++||+++|+|||||||+.|.+..| |++-.+...-
T Consensus 79 ally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g-r~~~~~~~l~ 133 (333)
T 1p7b_A 79 ALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA-HAIATLEIFV 133 (333)
T ss_dssp HTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-HHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHH-HHHHHHHHHH
Confidence 355777765 23445778999999999999999999999999876 6555444333
No 44
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=97.51 E-value=2.5e-06 Score=81.61 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=36.4
Q ss_pred CCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHH
Q psy11394 271 SDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKF 317 (391)
Q Consensus 271 ~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~ 317 (391)
.++..+.++++++||+++|||||||||+.|.+..| |++-.+-...+
T Consensus 75 ~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~g-r~~~~~~~l~G 120 (301)
T 1xl4_A 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLA-NTLVTLEALCG 120 (301)
T ss_dssp STTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-HHHHHHHHHHH
T ss_pred cCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHH-HHHHHHHHHHH
Confidence 34566889999999999999999999999999886 55544443333
No 45
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=97.49 E-value=2.6e-06 Score=69.76 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=26.2
Q ss_pred cccccceeeEEEEEEeecccceeccccc
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
+..+++||+++|+|||||||+.|.+..|
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~g 76 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFG 76 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHH
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhH
Confidence 6789999999999999999999999875
No 46
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=97.48 E-value=3.4e-06 Score=81.35 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=37.6
Q ss_pred EeeCCCCCCcc--cccccceeeEEEEEEeecccceecccccceeeeehhHH
Q psy11394 267 AEAGSDQSFFK--SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR 315 (391)
Q Consensus 267 ~e~~~~~~~f~--si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~ 315 (391)
.|.+.....+. ++++++||+++|||||||||+.|.+..| |++-.+-..
T Consensus 65 ~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g-r~~~~~~~l 114 (321)
T 2qks_A 65 MLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYA-HWIATLEIF 114 (321)
T ss_dssp HTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHH-HHHHHHHHH
T ss_pred HcCCccccCcCCcchhheeeeeeEEeccccCCCcCcccHHH-HHHHHHHHH
Confidence 45554556677 9999999999999999999999999886 655444333
No 47
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.37 E-value=4.7e-05 Score=71.68 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.7
Q ss_pred CCCCCcchhhhhhhhhhcccccCCC
Q psy11394 367 SFFKSIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 367 ~~f~s~~~alywaivT~tTVGYGDi 391 (391)
+.+ ++++|+||+++|+|||||||+
T Consensus 90 ~~w-~~~~a~yf~~~t~tTvGyGd~ 113 (280)
T 3ukm_A 90 WNW-DFTSALFFASTVLSTTGYGHT 113 (280)
T ss_dssp CCS-SHHHHHHHHHHHHTTCCCCSS
T ss_pred CCC-ChhcchhheeeeeeccccCCc
Confidence 344 899999999999999999996
No 48
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=97.36 E-value=4.2e-05 Score=73.06 Aligned_cols=21 Identities=33% Similarity=0.816 Sum_probs=20.3
Q ss_pred CcchhhhhhhhhhcccccCCC
Q psy11394 371 SIPDAFWWAVVTMTTVGYGDM 391 (391)
Q Consensus 371 s~~~alywaivT~tTVGYGDi 391 (391)
+|.+|+||+++|+|||||||+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi 135 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNV 135 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSS
T ss_pred ChhhhhHhhheeeeecccCCC
Confidence 899999999999999999996
No 49
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=97.10 E-value=7.2e-06 Score=62.97 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=27.9
Q ss_pred cccccceeeEEEEEEeecccceecccccceeee
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFC 310 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg~Rilk 310 (391)
+..+++||+++|+|||||||+.|.+..| |++-
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~-r~~~ 59 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLG-MYFT 59 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccH-HHHH
Confidence 7789999999999999999999998885 4443
No 50
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=96.98 E-value=9.9e-06 Score=69.24 Aligned_cols=28 Identities=39% Similarity=0.542 Sum_probs=26.3
Q ss_pred cccccceeeEEEEEEeecccceeccccc
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFE 305 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg 305 (391)
++.+++||+++|+|||||||+.|.+..|
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~ 79 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFG 79 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccH
Confidence 7889999999999999999999999885
No 51
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=96.91 E-value=1.4e-05 Score=63.28 Aligned_cols=32 Identities=44% Similarity=0.679 Sum_probs=27.7
Q ss_pred ccccccceeeEEEEEEeecccceecccccceee
Q psy11394 277 KSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309 (391)
Q Consensus 277 ~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril 309 (391)
-+..+++||+++|+|||||||+.|.+..| |++
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~g-r~~ 62 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFG-KIF 62 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccH-HHH
Confidence 36789999999999999999999998885 443
No 52
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=96.26 E-value=6.5e-05 Score=70.87 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=32.8
Q ss_pred EEEeeCCCCCCcccccccceeeEEEEEEeecc-cce-ecccc
Q psy11394 265 YFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYG-DMR-CGAFF 304 (391)
Q Consensus 265 y~~e~~~~~~~f~si~~~~w~~iit~TTvGyg-d~r-~~r~l 304 (391)
+..+.+.+++.|.|+|+++||++.++||+||| |+. |.+..
T Consensus 167 ~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~ 208 (285)
T 3rvy_A 167 TQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEV 208 (285)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTT
T ss_pred HHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Confidence 34445666777999999999999999999999 984 77665
No 53
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=95.91 E-value=0.00021 Score=73.88 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=28.6
Q ss_pred cccccceeeEEEEEEeecccceecccccceeeee
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR 311 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL 311 (391)
++.+++||+++|||||||||+.|.+..| |++-.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~-~~~~~ 83 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAG-YLFAS 83 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccH-HHHHH
Confidence 6789999999999999999999999886 55433
No 54
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=95.56 E-value=0.00045 Score=66.49 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=27.5
Q ss_pred cccccceeeEEEEEEeecccceecccccceee
Q psy11394 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309 (391)
Q Consensus 278 si~~~~w~~iit~TTvGygd~r~~r~lg~Ril 309 (391)
++.+++||+++|+|||||||+.|.+..| |++
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~-r~~ 75 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLG-MYF 75 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSH-HHH
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCH-HHH
Confidence 7889999999999999999999998875 443
No 55
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=95.55 E-value=0.00052 Score=66.30 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=25.3
Q ss_pred CcccccccceeeEEEEEEeecccceec
Q psy11394 275 FFKSIPDAFWWAVVTMTTVGYGDMRCG 301 (391)
Q Consensus 275 ~f~si~~~~w~~iit~TTvGygd~r~~ 301 (391)
.+.++++++||+++|+|||||||+.|.
T Consensus 88 ~~~sf~~af~fSv~T~TTvGYGd~~p~ 114 (340)
T 3sya_A 88 NLNGFVSAFLFSIETETTIGYGYRVIT 114 (340)
T ss_dssp CCCSTTHHHHHHHHHHSCCCCSSSCBC
T ss_pred cccCHHHHHhhhheeeeeecCCCccCc
Confidence 468999999999999999999999996
No 56
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=95.14 E-value=0.0074 Score=49.30 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=59.1
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDV 107 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~ 107 (391)
-|+|.|||+.|...+..|.... ..++..... ...+++-+ |-+++.|+.+|+|+.+ |++..+++ ....
T Consensus 31 Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~------e~~~~i~l~~~~~~~~f~~ll~~~Yt-g~~~~~~~-~~~~ 102 (127)
T 1r29_A 31 DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK------RNLSVINLDPEINPEGFNILLDFMYT-SRLNLREG-NIMA 102 (127)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT------TTCSEEECCTTSCHHHHHHHHHHHHH-SCCCCCTT-THHH
T ss_pred CEEEEECCEEEehHHHHHHHhCHHHHHHhcCCcc------CCCCEEEeCCCCCHHHHHHHHHHHcC-CCcCcCHH-HHHH
Confidence 4778899999999999995442 233322111 13456777 6689999999999999 78876543 5666
Q ss_pred HHHHHhcCCCcchh
Q psy11394 108 FSEEIKFYELGDVA 121 (391)
Q Consensus 108 ~~~E~~f~~l~~~~ 121 (391)
+.+-|++|+++...
T Consensus 103 ll~~A~~~~i~~L~ 116 (127)
T 1r29_A 103 VMATAMYLQMEHVV 116 (127)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 88999999997743
No 57
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=94.43 E-value=0.012 Score=47.13 Aligned_cols=77 Identities=16% Similarity=0.334 Sum_probs=56.7
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeeec---CCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRLRRPVNVPLD 106 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~D---R~~~~F~~Il~y~r~~g~l~~p~~~~~~ 106 (391)
-|++.|||++|...+..|...- ..++... ..+++-++ -+|+.|+.+|+|+.+ |++..+++ ...
T Consensus 24 Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---------~~~~i~l~~~~~~~~~f~~ll~~~Yt-~~~~~~~~-~v~ 92 (116)
T 2vpk_A 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---------SENNVFLDQSQVKADGFQKLLEFIYT-GTLNLDSW-NVK 92 (116)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---------CCSCEECCTTTCCHHHHHHHHHHHHH-SCCCCCTT-THH
T ss_pred cEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---------CCCeEEeecCCCCHHHHHHHHHHHcC-CCcccCHH-HHH
Confidence 3678999999999999995442 2233221 23455454 689999999999999 78876544 566
Q ss_pred hHHHHHhcCCCcch
Q psy11394 107 VFSEEIKFYELGDV 120 (391)
Q Consensus 107 ~~~~E~~f~~l~~~ 120 (391)
.+.+-|++|+++..
T Consensus 93 ~ll~~A~~~~i~~L 106 (116)
T 2vpk_A 93 EIHQAADYLKVEEV 106 (116)
T ss_dssp HHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHH
Confidence 68899999999764
No 58
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=94.23 E-value=0.018 Score=47.11 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=58.8
Q ss_pred EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
|+|.|||+.|...+..|.... ..++... ...++.+ |=+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus 36 v~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---------~~~~i~l~~~~~~~~f~~ll~~iYt-g~~~i~~~-~~~~l 104 (129)
T 3ga1_A 36 VSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---------RSAVVELPAAVQPQSFQQILSFCYT-GRLSMNVG-DQDLL 104 (129)
T ss_dssp EEEEETTEEEEECHHHHHHHBHHHHHHHHHC---------CCSEEECCTTCCHHHHHHHHHHHHH-SEEECCTT-THHHH
T ss_pred eEEEECCEEEEehHHHHHHcCHHHHHHHcCC---------CCCEEEECCCCCHHHHHHHHHHHhC-CccccCHH-HHHHH
Confidence 678899999999999996543 2222211 3456777 5689999999999999 89887655 46668
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 105 l~~A~~~~i~~l~ 117 (129)
T 3ga1_A 105 MYTAGFLQIQEIM 117 (129)
T ss_dssp HHHHHHTTBTTSS
T ss_pred HHHHHHhCCHHHH
Confidence 9999999997743
No 59
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=94.03 E-value=0.0021 Score=62.09 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.2
Q ss_pred CcccccccceeeEEEEEEeecccceec--ccc
Q psy11394 275 FFKSIPDAFWWAVVTMTTVGYGDMRCG--AFF 304 (391)
Q Consensus 275 ~f~si~~~~w~~iit~TTvGygd~r~~--r~l 304 (391)
.+.++++++||++.|+|||||||+.|. +..
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~ 122 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPL 122 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHH
T ss_pred ccCCHHHHhheeeeeeEeecCCCccCCCCCHH
Confidence 467999999999999999999999974 454
No 60
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=93.84 E-value=0.027 Score=45.74 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=57.2
Q ss_pred EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeeec--CCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFFD--RNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~D--R~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
|+|.|||++|...+..|.... ..++.... .+..++-+. =+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus 35 v~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~e~~~i~l~~~~~~~~f~~~l~~iYt-g~~~~~~~-~v~~l 105 (125)
T 3ohu_A 35 VTLIVERKEFRAHRAVLAACSEYFWQALVGQT-------KNDLVVSLPEEVTARGFGPLLQFAYT-AKLLLSRE-NIREV 105 (125)
T ss_dssp EEEEETTEEEEECHHHHHHHBHHHHHHHTTCC-------CSSCEEECCTTCCHHHHHHHHHHHTT-SEEEECTT-THHHH
T ss_pred eEEEECCEEEechHHHHHHcCHHHHHHhcCCC-------CCCcEEEeCCCCCHHHHHHHHHhHcC-CceEECHH-HHHHH
Confidence 778899999999999996543 22332211 123455553 489999999999999 89887654 55668
Q ss_pred HHHHhcCCCcch
Q psy11394 109 SEEIKFYELGDV 120 (391)
Q Consensus 109 ~~E~~f~~l~~~ 120 (391)
.+-|++|+++..
T Consensus 106 l~~A~~l~i~~L 117 (125)
T 3ohu_A 106 IRCAEFLRMHNL 117 (125)
T ss_dssp HHHHHHHTBSSC
T ss_pred HHHHHHhCCHHH
Confidence 899999999774
No 61
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=93.65 E-value=0.057 Score=43.71 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHH
Q psy11394 34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI 112 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~ 112 (391)
|+|.|||++|...+..|....+-+-+ ..+++-+ |=+++.|+.+|+|+.| |++....+ ....+.+-|
T Consensus 33 v~l~v~~~~f~aHk~vLaa~S~yF~~-----------~~~~i~l~~v~~~~f~~ll~fiYt-g~~~i~~~-~v~~ll~aA 99 (119)
T 3m5b_A 33 TLITVGSQEFPAHSLVLAGVSQQLGR-----------RGQWALGEGISPSTFAQLLNFVYG-ESVELQPG-ELRPLQEAA 99 (119)
T ss_dssp EEEEETTEEEEECHHHHHTTCGGGCC-----------CEEEECCSSCCHHHHHHHHHHHTT-CCEEECGG-GHHHHHHHH
T ss_pred eEEEECCEEEeeEHHHHHHcCHHHhc-----------CCCEEEeCCCCHHHHHHHHHHHcC-CCcCcCHH-HHHHHHHHH
Confidence 77889999999999999665332211 2233333 4578999999999999 78877544 456688999
Q ss_pred hcCCCcchh
Q psy11394 113 KFYELGDVA 121 (391)
Q Consensus 113 ~f~~l~~~~ 121 (391)
++|++....
T Consensus 100 ~~l~i~~l~ 108 (119)
T 3m5b_A 100 RALGVQSLE 108 (119)
T ss_dssp HHTTCHHHH
T ss_pred HHhCCHHHH
Confidence 999997743
No 62
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=93.10 E-value=0.025 Score=47.39 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=56.4
Q ss_pred EEEEeCCeeeeecHHHhccC-C--Ccccc-CccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 34 VVINVSGLRFETQLRTLNQF-P--ETLLG-DPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~-p--~t~l~-~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
|+|.|||++|...+..|... | ..++. .+.. ......++-+ |=+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus 50 v~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e----~e~~~~~I~l~~v~~~~f~~lL~fiYt-g~~~i~~~-~v~~l 123 (144)
T 2ppi_A 50 AHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPK----DDGSTYKIELEGISVMVMREILDYIFS-GQIRLNED-TIQDV 123 (144)
T ss_dssp EEEEETTEEEEECHHHHHHHCHHHHHHHHHCC---------CCCEEECCSSCHHHHHHHHHHHTT-SCCCCCTT-THHHH
T ss_pred eEEEECCEEEehHHHHHHHcCHHHHHHHcCCCcc----ccCCCcEEEeCCCCHHHHHHHHHHHhC-CCCCCCHH-HHHHH
Confidence 78899999999999999643 2 23332 1111 0122345555 4589999999999999 78866543 56668
Q ss_pred HHHHhcCCCcch
Q psy11394 109 SEEIKFYELGDV 120 (391)
Q Consensus 109 ~~E~~f~~l~~~ 120 (391)
.+-|++|+++..
T Consensus 124 l~~A~~l~i~~L 135 (144)
T 2ppi_A 124 VQAADLLLLTDL 135 (144)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHhCcHHH
Confidence 899999999764
No 63
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=93.09 E-value=0.034 Score=45.98 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=55.9
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|+|.|||++|...+..|...- ..++.... .+++-+ |-+++.|+.+|+|+.+ |++.++.+ ....+
T Consensus 27 Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---------~~~i~l~~~~~~~f~~lL~fiYt-g~~~i~~~-~v~~l 95 (135)
T 2yy9_A 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---------GGSVVLPAGFAEIFGLLLDFFYT-GHLALTSG-NRDQV 95 (135)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHTCC-------------CCEEECGGGHHHHHHHHHHHHH-SCCCCCTT-THHHH
T ss_pred ceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---------CCeEEeCCCCHHHHHHHHHHHhC-CCCCCCHH-HHHHH
Confidence 3678899999999999996542 22332110 234444 4578999999999999 78877554 46678
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 96 l~~A~~l~i~~L~ 108 (135)
T 2yy9_A 96 LLAAKELRVPEAV 108 (135)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCcHHHH
Confidence 9999999998754
No 64
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=92.34 E-value=0.039 Score=44.44 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=56.2
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|++.|||++|...+..|...- ..++.... .+++-+ |-+|+.|+.+|+|+.+ |++..+.+ ....+
T Consensus 26 Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---------~~~i~l~~~~~~~f~~ll~~iYt-g~~~~~~~-~v~~l 94 (119)
T 3b84_A 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---------GGSVVLPAGFAEIFGLLLDFFYT-GHLALTSG-NRDQV 94 (119)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---------CCCEEECGGGHHHHHHHHHHHHH-SCCCCCTT-THHHH
T ss_pred ceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---------CCeEEeCCCCHHHHHHHHHHHcC-CCCccCHH-HHHHH
Confidence 3678899999999999996542 23332211 234444 4568999999999999 78876654 46678
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 95 l~~A~~~~i~~L~ 107 (119)
T 3b84_A 95 LLAARELRVPEAV 107 (119)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCcHHHH
Confidence 8999999997743
No 65
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=92.17 E-value=0.059 Score=43.70 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=56.8
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDV 107 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~ 107 (391)
-|+|.|||++|...+..|...- ..++.... .+..++-+ |=+++.|+.+|+|+.+ |++..+.+ ....
T Consensus 31 Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~-------~e~~~i~l~~~v~~~~f~~lL~~iYt-g~~~i~~~-~v~~ 101 (124)
T 2ihc_A 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA-------DGELNITLPEEVTVKGFEPLIQFAYT-AKLILSKE-NVDE 101 (124)
T ss_dssp CEEEEETTEEEEECHHHHHHHBHHHHHHHTTC----------CEEEECCTTSCHHHHHHHHHHHHH-SEEEEETT-THHH
T ss_pred CEEEEECCEEEecHHHHHHHcCHHHHHHHcCCC-------CCCceEeecCCcCHHHHHHHHHHhcC-CCcccCHH-HHHH
Confidence 3678999999999999995432 33333211 11234444 4578899999999999 79877654 4666
Q ss_pred HHHHHhcCCCcchh
Q psy11394 108 FSEEIKFYELGDVA 121 (391)
Q Consensus 108 ~~~E~~f~~l~~~~ 121 (391)
+.+-|++|+++...
T Consensus 102 ll~~A~~~~~~~L~ 115 (124)
T 2ihc_A 102 VCKCVEFLSVHNIE 115 (124)
T ss_dssp HHHHHHHHTBSSCC
T ss_pred HHHHHHHHCCHHHH
Confidence 88999999998743
No 66
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=92.09 E-value=0.053 Score=42.64 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=56.4
Q ss_pred eEEEEeCC----eeeeecHHHhccC-C--CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCC
Q psy11394 33 RVVINVSG----LRFETQLRTLNQF-P--ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVP 104 (391)
Q Consensus 33 ~v~lNVgG----~~f~t~~~tl~~~-p--~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~ 104 (391)
=|++.||| ++|...+..|... | ..++..... ... +++-+ |-+|+.|+.+|+|+.+ |++..+.+ .
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~-----e~~-~~i~l~~~~~~~f~~~l~~iYt-~~~~~~~~-~ 81 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLA-----EVK-SEIHIPDVEPAAFLILLKYMYS-DEIDLEAD-T 81 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC-----------C-CEEEETTSCHHHHHHHHHHHHH-CCCCCCTT-T
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcc-----cCC-CeEEeCCCCHHHHHHHHHHHcC-CCccCCHH-H
Confidence 36788998 9999999999644 2 233322111 111 56666 5689999999999999 78877654 4
Q ss_pred HHhHHHHHhcCCCcchh
Q psy11394 105 LDVFSEEIKFYELGDVA 121 (391)
Q Consensus 105 ~~~~~~E~~f~~l~~~~ 121 (391)
...+..-|++|+++...
T Consensus 82 ~~~ll~~A~~~~~~~L~ 98 (109)
T 2vkp_A 82 VLATLYAAKKYIVPALA 98 (109)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcHHHH
Confidence 45688999999997743
No 67
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=91.74 E-value=0.034 Score=44.87 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=55.2
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeeecC-CCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFFDR-NRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~DR-~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|++.|||++|...+..|...- ..++.+ ..+++-++- +++.|+.+|+|+.+ |++..+.+ ....+
T Consensus 29 Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~----------~~~~i~l~~~~~~~f~~ll~~~Yt-g~~~i~~~-~~~~l 96 (119)
T 2q81_A 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----------QKDVVHLDISNAAGLGQVLEFMYT-AKLSLSPE-NVDDV 96 (119)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHHH----------CCSGGGGGGCCHHHHHHHHHHHHH-SCCCCCTT-THHHH
T ss_pred ceEEEECCEEEehhHHHHHHcCHHHHHHHcC----------CCCEEEeCCCCHHHHHHHHHHHcC-CCCccCHH-HHHHH
Confidence 3678899999999999995432 223321 112333332 68899999999999 78877655 56668
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 97 l~~A~~l~i~~L~ 109 (119)
T 2q81_A 97 LAVATFLQMQDII 109 (119)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 8999999997743
No 68
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=90.77 E-value=0.11 Score=47.66 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=56.1
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|+|.|||++|...+..|...- ..++..... .......++-+ |=+++.|+.+|+|+.+ |++.++.+ ....+
T Consensus 33 Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~---~~e~~~~~i~l~~v~~~~f~~ll~~~Yt-~~~~i~~~-~v~~l 107 (256)
T 3hve_A 33 DAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPP---KDDGSTYKIELEGISVMVMREILDYIFS-GQIRLNED-TIQDV 107 (256)
T ss_dssp CEEEEETTEEEEECHHHHHTTCHHHHHTC--------------CEEECSSCCHHHHHHHHHHHHH-SCCCCC-C-CHHHH
T ss_pred ceEEEECCEEEechHHHHHHcCHHHHHHhCCCCC---cccCCCCeEEeCCCCHHHHHHHHhhccC-CCCcccHh-HHHHH
Confidence 3678899999999999996653 233321100 00122345555 4589999999999999 78876543 56678
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 108 l~~A~~l~i~~l~ 120 (256)
T 3hve_A 108 VQAADLLLLTDLK 120 (256)
T ss_dssp HHHHHHHTCHHHH
T ss_pred HHHHHHHChHHHH
Confidence 9999999998743
No 69
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=90.60 E-value=0.072 Score=42.94 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=55.6
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|++.|||++|...+..|.... ..++.+ +.+++-+ |=+|+.|+.+|+|+.+ |++..+++ ....+
T Consensus 30 Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~----------~~~~i~l~~~~~~~f~~ll~~~Yt-g~~~~~~~-~~~~l 97 (121)
T 1buo_A 30 DVVIMVDSQEFHAHRTVLACTSKMFEILFHR----------NSQHYTLDFLSPKTFQQILEYAYT-ATLQAKAE-DLDDL 97 (121)
T ss_dssp CEEEEESSCEEEECHHHHHHHCHHHHHHTTS----------CCSEEEECSSCHHHHHHHHHHHHH-SCCCCCGG-GHHHH
T ss_pred CEEEEECCEEEehhHHHHhhcCHHHHHHHcC----------CCcEEEeCCCCHHHHHHHHHhhcC-CCcCCCHH-HHHHH
Confidence 3678899999999999995432 233321 1234444 4588999999999999 78876643 45668
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 98 l~~A~~~~i~~L~ 110 (121)
T 1buo_A 98 LYAAEILEIEYLE 110 (121)
T ss_dssp HHHHHHHTCHHHH
T ss_pred HHHHHHHCCHHHH
Confidence 8999999997643
No 70
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=90.55 E-value=0.11 Score=43.01 Aligned_cols=80 Identities=13% Similarity=0.242 Sum_probs=57.2
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDV 107 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~ 107 (391)
-|+|.|||++|...+..|...- ..++.... .+..++-+ |=+++.|+.+|+|+.+ |++..+.+ ....
T Consensus 38 Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~e~~~i~l~~~v~~~~~~~lL~~~Yt-g~~~i~~~-~v~~ 108 (138)
T 2z8h_A 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT-------DAELTVTLPEEVTVKGFEPLIQFAYT-AKLILSKD-NVDE 108 (138)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC-------CTTEEEECCTTSCHHHHHHHHHHHHH-SCCCCCTT-THHH
T ss_pred CeEEEECCEEEechHHHHHHcCHHHHHHHhcCC-------CCCceEEeCCCCCHHHHHHHHHHhcC-CCcccCHH-HHHH
Confidence 3778999999999999995432 23332211 11234455 4578899999999999 78876654 4666
Q ss_pred HHHHHhcCCCcchh
Q psy11394 108 FSEEIKFYELGDVA 121 (391)
Q Consensus 108 ~~~E~~f~~l~~~~ 121 (391)
+.+-|++|+++...
T Consensus 109 ll~~A~~~~i~~L~ 122 (138)
T 2z8h_A 109 VCRCVEFLSVHNIE 122 (138)
T ss_dssp HHHHHHHHTCGGGH
T ss_pred HHHHHHHhCCHHHH
Confidence 88999999998754
No 71
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=90.30 E-value=0.076 Score=42.63 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=52.9
Q ss_pred EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCee-ecCCCCCHHhHHHH
Q psy11394 34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRL-RRPVNVPLDVFSEE 111 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l-~~p~~~~~~~~~~E 111 (391)
|++.|||++|...+..|...-. .+..+... ..+++-+ |=+|+.|+.+|+|+.+ |++ ..+ .-....+.+-
T Consensus 34 v~l~v~~~~f~aHk~vLaa~S~-~F~~~f~~------~~~~i~l~~~~~~~f~~~l~~~Yt-g~~~~~~-~~~~~~ll~~ 104 (116)
T 3fkc_A 34 VTVIVEDRKFRAHKNILSASST-YFHQLFSV------AGQVVELSFIRAEIFAEILNYIYS-SKIVRVR-SDLLDELIKS 104 (116)
T ss_dssp EEEEETTEEEEECHHHHHHHCH-HHHHHTTS------CCSEEEECSSCHHHHHHHHHHHTT-SCCCSCC-HHHHHHHHHH
T ss_pred EEEEECCEEEehhHHHHHHcCH-HHHHHHcC------CCCEEEeCCCCHHHHHHHHHhhcC-CCcCCCC-HHHHHHHHHH
Confidence 6778999999999999955421 11111111 1345555 4579999999999999 777 333 2345668889
Q ss_pred HhcCCCcc
Q psy11394 112 IKFYELGD 119 (391)
Q Consensus 112 ~~f~~l~~ 119 (391)
|++|+++.
T Consensus 105 A~~l~i~~ 112 (116)
T 3fkc_A 105 GQLLGVKF 112 (116)
T ss_dssp HHHHTCHH
T ss_pred HHHhCccc
Confidence 99999865
No 72
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=90.17 E-value=0.073 Score=42.68 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=56.2
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|++.|||++|...+..|...- ..++..... ....+++-+ |=+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus 27 Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~-----e~~~~~i~l~~~~~~~f~~ll~~~Yt-~~~~~~~~-~~~~l 99 (120)
T 2if5_A 27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAV-----VDQQNVYEIDFVSAEALTALMDFAYT-ATLTVSTA-NVGDI 99 (120)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHHC----------CCSEEECCSSCHHHHHHHHHHHHH-SCCCCCGG-GHHHH
T ss_pred CeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcc-----ccCCceEEeCCCCHHHHHHHHHHHcC-CCCccCHH-HHHHH
Confidence 4678899999999999996442 233332111 112234444 3578999999999999 78776644 45668
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
.+-|++|+++...
T Consensus 100 l~~A~~~~i~~L~ 112 (120)
T 2if5_A 100 LSAARLLEIPAVS 112 (120)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 8999999997743
No 73
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=89.86 E-value=0.071 Score=45.42 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=57.6
Q ss_pred EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhHH
Q psy11394 34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFS 109 (391)
Q Consensus 34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~ 109 (391)
|+|.|||++|...+..|...- ..++.... .....+++-+ |-+|+.|+.+|+|+.+ |++..+++ ....+.
T Consensus 37 v~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~-----~e~~~~~i~l~~~~~~~f~~~l~~~Yt-~~~~~~~~-~~~~ll 109 (172)
T 3htm_A 37 CCLCVAGQEFQAHKAILAARSPVFSAMFEHEM-----EESKKNRVEINDVEPEVFKEMMCFIYT-GKAPNLDK-MADDLL 109 (172)
T ss_dssp EEEEETTEEEEECHHHHHHHCHHHHHHHHSCC-----CGGGTTEEEECSSCHHHHHHHHHHHHH-SCCTTGGG-THHHHH
T ss_pred eEEEECCEEEEeeHHHHHHcCHHHHHHHccCc-----cccCCCeEEecCCCHHHHHHHHHHHhC-CCCCCcHH-HHHHHH
Confidence 788999999999999996542 23333211 1112345555 6689999999999999 78765443 455688
Q ss_pred HHHhcCCCcchh
Q psy11394 110 EEIKFYELGDVA 121 (391)
Q Consensus 110 ~E~~f~~l~~~~ 121 (391)
+-|++|+++...
T Consensus 110 ~~A~~~~~~~l~ 121 (172)
T 3htm_A 110 AAADKYALERLK 121 (172)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHhCcHHHH
Confidence 999999997743
No 74
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=87.37 E-value=0.06 Score=44.51 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=56.3
Q ss_pred eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|+|.|||+.|...+..|...- ..++..... ....+++-+ |-+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus 27 Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~-----e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~l 99 (145)
T 4eoz_A 27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME-----ESKKNRVEINDVEPEVFKEMMCFIYT-GKAPNLDK-MADDL 99 (145)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSH-----HHHHTEEEECSSCHHHHHHHHHHHHH-SCCTTGGG-THHHH
T ss_pred ceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCc-----CCCCceEEecCCCHHHHHHHHHhhcc-CccCCcHH-HHHHH
Confidence 3678899999999999995542 233322111 111235555 5689999999999999 78765443 45568
Q ss_pred HHHHhcCCCcch
Q psy11394 109 SEEIKFYELGDV 120 (391)
Q Consensus 109 ~~E~~f~~l~~~ 120 (391)
.+-|++|+++..
T Consensus 100 l~~A~~~~~~~l 111 (145)
T 4eoz_A 100 LAAADKYALERL 111 (145)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHhCHHHH
Confidence 899999999764
No 75
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=84.98 E-value=0.57 Score=43.24 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=55.8
Q ss_pred EEEEeC---CeeeeecHHHhccC-C--CccccCccCCccCCCCCCceeee-------cCCCCChHHHHhhhhcCCeeecC
Q psy11394 34 VVINVS---GLRFETQLRTLNQF-P--ETLLGDPARRIRYFDPLRNEYFF-------DRNRPSFDAILYYYQSGGRLRRP 100 (391)
Q Consensus 34 v~lNVg---G~~f~t~~~tl~~~-p--~t~l~~~~~~~~~~~~~~~e~f~-------DR~~~~F~~Il~y~r~~g~l~~p 100 (391)
|+|.|| |++|...+..|... | ..++... ......+++-+ |=+|+.|+.+|+|+.+ |++..+
T Consensus 35 v~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~-----~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt-g~~~i~ 108 (279)
T 3i3n_A 35 ITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQ-----FSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT-GRIRVS 108 (279)
T ss_dssp EEEECC----CEEEECHHHHHHHCTTSGGGCCC-------------EEECCCCSSTTCSCHHHHHHHHHHHHH-SEEEEE
T ss_pred eEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCC-----CccccCCeEEeccccccCCCCHHHHHHHHHhhCc-CCcccC
Confidence 778998 99999999999644 2 3344321 11122345655 5688999999999999 898776
Q ss_pred CCCCHHhHHHHHhcCCCcchh
Q psy11394 101 VNVPLDVFSEEIKFYELGDVA 121 (391)
Q Consensus 101 ~~~~~~~~~~E~~f~~l~~~~ 121 (391)
.+ ....+.+-|++|+++...
T Consensus 109 ~~-~v~~ll~~A~~l~i~~L~ 128 (279)
T 3i3n_A 109 TG-SVHEVLELADRFLLIRLK 128 (279)
T ss_dssp TT-THHHHHHHHHHTTCHHHH
T ss_pred HH-HHHHHHHHHHHHCcHHHH
Confidence 54 466688999999997743
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=84.22 E-value=0.047 Score=49.25 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=31.1
Q ss_pred hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccce
Q psy11394 261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMR 299 (391)
Q Consensus 261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r 299 (391)
+.+.+....+.+++.|.++|+++||....+|+.|++|+-
T Consensus 148 a~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~ 186 (229)
T 4dxw_A 148 ATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVM 186 (229)
T ss_dssp HHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHH
T ss_pred HHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHH
Confidence 333444556677788999999999999999999999873
No 77
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=71.93 E-value=0.86 Score=42.67 Aligned_cols=82 Identities=15% Similarity=0.224 Sum_probs=56.8
Q ss_pred eEEEEeCCeeeeecHHHhccC-C--CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394 33 RVVINVSGLRFETQLRTLNQF-P--ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF 108 (391)
Q Consensus 33 ~v~lNVgG~~f~t~~~tl~~~-p--~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~ 108 (391)
-|+|.|||+.|...+..|... | ..++.... ......++-+ |=+|+.|+.+|+|+.+ |++..++ .....+
T Consensus 176 Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~-----~e~~~~~i~l~~~~~~~f~~~L~~iYt-~~~~~~~-~~~~~l 248 (312)
T 3hqi_A 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM-----EESKKNRVEINDVEPEVFKEMMCFIYT-GKAPNLD-KMADDL 248 (312)
T ss_dssp CEEEEETTEEEEECHHHHHHHCHHHHHHTTC----------CCSEEEECSSCHHHHHHHHHHHHH-SCCTTHH-HHHHHH
T ss_pred ceEEEECCEEEeHHHHHHHHcCHHHHHHhccCc-----cccCCceEEecCCCHHHHHHHHHhhcC-CCCCChH-HHHHHH
Confidence 488899999999999999554 2 23332211 1223356666 5689999999999999 6765443 245568
Q ss_pred HHHHhcCCCcchh
Q psy11394 109 SEEIKFYELGDVA 121 (391)
Q Consensus 109 ~~E~~f~~l~~~~ 121 (391)
+.-|++|+++...
T Consensus 249 l~~A~~~~~~~l~ 261 (312)
T 3hqi_A 249 LAAADKYALERLK 261 (312)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCHHHHH
Confidence 8899999997753
No 78
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=67.37 E-value=0.72 Score=36.83 Aligned_cols=53 Identities=6% Similarity=-0.029 Sum_probs=33.6
Q ss_pred hhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCC
Q psy11394 338 WAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGD 390 (391)
Q Consensus 338 ~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGD 390 (391)
.++.+.++++++++++|.+...+-++..+++|.+++.|+.=.+..+|+=|+.|
T Consensus 5 g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~ 57 (112)
T 4f4l_A 5 GVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSM 57 (112)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHH
Confidence 34445555555666666666555555556689888888887777777777654
No 79
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.89 E-value=33 Score=19.79 Aligned_cols=17 Identities=18% Similarity=0.039 Sum_probs=14.3
Q ss_pred hhhhhhhHHHHHHHHHH
Q psy11394 218 ETFLIMPSLYCLLTSLL 234 (391)
Q Consensus 218 e~v~~~~F~~E~llRl~ 234 (391)
|.++..+|++|.+++.+
T Consensus 3 e~~F~~IYtfE~liKi~ 19 (26)
T 1qg9_A 3 EYTFTGIYTFESLIKIL 19 (26)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHHHHHHHHH
Confidence 56788999999998865
Done!