RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11394
(391 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 299 bits (767), Expect = 1e-97
Identities = 191/377 (50%), Positives = 238/377 (63%), Gaps = 32/377 (8%)
Query: 23 PIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRP 82
DH+ ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRP
Sbjct: 43 DPEADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRP 102
Query: 83 SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSH 142
SFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A FREDEG+IKEEE+PLP +
Sbjct: 103 SFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPEN 162
Query: 143 EFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK-------VFNT 195
EFQR+VWLLFEYPESS AR++AI+SV VIL+SIV FCLETLP F+ V
Sbjct: 163 EFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFH 222
Query: 196 TTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFA 255
T + + I + TDPFF++ET C++ + V I
Sbjct: 223 TYSQSTIGYQQSTSFTDPFFIVETL-------CIIWFSFEFLVRFFACPSKAGFFTNIMN 275
Query: 256 GVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR 315
+ + + Y+ +S + VV + + MR LR
Sbjct: 276 IIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRI----MRI-------------LR 318
Query: 316 KFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPD 374
F L +S+ ++G+++ + + + + GV+LFSSAVYFAEA +S F SIPD
Sbjct: 319 IFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPD 378
Query: 375 AFWWAVVTMTTVGYGDM 391
AFWWAVV+MTTVGYGDM
Sbjct: 379 AFWWAVVSMTTVGYGDM 395
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 136 bits (343), Expect = 2e-39
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 23 PIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRP 82
P + E +V+NVSG RF+T TL ++P+TLLG + +F+ EYFFDR+
Sbjct: 4 PADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDRDPE 62
Query: 83 SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSH 142
F +L +Y++ G+L P + + +E+ FY + +E ++ E H
Sbjct: 63 VFRCVLNFYRT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLEHHH 121
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 135 bits (341), Expect = 5e-39
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 20 HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDR 79
P + E +V+NVSG RF+T TL ++P+TLLG + +F+ EYFFDR
Sbjct: 23 PLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDR 81
Query: 80 NRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEE 136
+ F +L +Y++ G+L P + + +E+ FY + +E ++ E
Sbjct: 82 DPEVFRCVLNFYRT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRE 137
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton transport,
membrane protein; 1.51A {Aplysia californica} SCOP:
d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E*
1qdw_A 1dsx_A
Length = 100
Score = 131 bits (330), Expect = 8e-38
Identities = 86/100 (86%), Positives = 95/100 (95%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
QSGGRLRRPVNVPLDVFSEEIKFYELG+ A ++REDEGF
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYELGENAFERYREDEGF 100
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 125 bits (317), Expect = 8e-36
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 29 DFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAIL 88
D RV+INV G+R ET TL + P T L + +DP+ NEYFFDR+ F I+
Sbjct: 2 DAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQII 61
Query: 89 YYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEK 137
YY+S G+L P +V +F EE++F+ L + +
Sbjct: 62 NYYRS-GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQ 109
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 123 bits (311), Expect = 6e-35
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
+V+NVSG RF+T TL ++P+TLLG R ++ P +YFFDR+ F IL +Y++
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 94 GGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEE 136
G+L P + + + EE+ F+ L +E + E
Sbjct: 61 -GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRE 102
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 101 bits (253), Expect = 3e-24
Identities = 30/180 (16%), Positives = 49/180 (27%), Gaps = 37/180 (20%)
Query: 156 ESSQAARVVAIISVFVILLSIVIFCLETLPEF--KHYKVFNTTTNGTKIE--------ED 205
R+ A ++ + ++ T+P+ +
Sbjct: 2 SVLPFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLL 61
Query: 206 EVPD----ITDPFFLIETFLIMPSLYCLLTSLL-----------------------LYSV 238
+ P I+ ++ L L L V
Sbjct: 62 KRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRV 121
Query: 239 VMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ LI + + + Y E F SIP A WWAVVT++T GYGD
Sbjct: 122 LANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDT 181
Score = 83.8 bits (207), Expect = 4e-18
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
+ T G + + A Y E + F SIP A WWAVVT++T GYGD
Sbjct: 130 IGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDT 181
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 87.3 bits (216), Expect = 5e-21
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 246 LIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ + ++ S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 85.3 bits (211), Expect = 3e-20
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
++ S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 18 VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 85.7 bits (212), Expect = 3e-20
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 199 GTKIEEDEVPDITDPFFLIETFLIMPSLYCL-LTSLLLYSVVM-IYVHVLIPILMYIFAG 256
G+ I LI+ M S L LLL ++ + +
Sbjct: 3 GSHHHHHHSSGIEGRGRLIKHMPPMLSGLLARLVKLLLGRHGSALHWRAAGAATVLLVIV 62
Query: 257 VVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
++ S AE G+ + S PDA WW+V T TTVGYGD+
Sbjct: 63 LLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL 104
Score = 83.3 bits (206), Expect = 2e-19
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
++ S AE G+ + S PDA WW+V T TTVGYGD+
Sbjct: 62 VLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL 104
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 84.4 bits (209), Expect = 4e-20
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 244 HVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ + ++ S AE G+ + + P A WWA T TTV YGD+
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDL 81
Score = 82.4 bits (204), Expect = 2e-19
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
++ S AE G+ + + P A WWA T TTV YGD+
Sbjct: 39 VLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDL 81
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 85.7 bits (212), Expect = 4e-20
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 246 LIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ + ++ S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 35 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87
Score = 83.4 bits (206), Expect = 3e-19
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
++ S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 45 VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 83.5 bits (207), Expect = 5e-20
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 28 HDFCERVVINVSGLRFETQLRTLNQFPETLLG---DPARRIRYFDPLRNEYFFDRNRPSF 84
+ V +NV G F T +TL + P++ L + Y DR+ F
Sbjct: 2 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 61
Query: 85 DAILYYYQSGGRLRRPVNVPLDVFSEEIKFYEL 117
+L Y + G+L ++ + EE +FY +
Sbjct: 62 GPVLNYLRH-GKLVINKDLAEEGVLEEAEFYNI 93
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 80.6 bits (199), Expect = 5e-19
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ + + S AE G+ + S PDA WW+V T TTVGYGD
Sbjct: 3 DHEREAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDR 60
Score = 79.0 bits (195), Expect = 2e-18
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 350 VVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
+ S AE G+ + S PDA WW+V T TTVGYGD
Sbjct: 19 LEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDR 60
Score = 52.5 bits (126), Expect = 5e-09
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 330 KSIPDAFWWAVVTMTTVGYG 349
S PDA WW+V T TTVGYG
Sbjct: 39 ISYPDAIWWSVETATTVGYG 58
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 83.1 bits (205), Expect = 8e-19
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 29 DFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNE---YFFDRNRPSFD 85
+ V +NV G F T +TL + P++ L + D ++E Y DR+ F
Sbjct: 9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 68
Query: 86 AILYYYQSGGRLRRPVNVPLDVFSEEIKFYEL 117
+L Y + G+L ++ + EE +FY +
Sbjct: 69 PVLNYLRH-GKLVINKDLAEEGVLEEAEFYNI 99
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 83.0 bits (206), Expect = 1e-18
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 70/203 (34%)
Query: 148 VWLLFEYPESSQAARVVAIISVFVILL--------------------SIVIFCLE----- 182
+ + E+P A++SV V+++ ++I +
Sbjct: 1 IGDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRA 60
Query: 183 -TLPEFKHYKVFNTTTNGTKIEEDEVPDITD-----PFFLIETFLIMPSLYCLLTSL--- 233
+ Y + + P L+ ++ L
Sbjct: 61 YKSGDPAGYVKKT---------------LYEIPALVPAGLL---ALIEGHLAGLGLFRLV 102
Query: 234 -----------------LLYSVVMIYVHVLIPILMYIFAGVVLFSST-VYFAEAGSDQSF 275
L ++ + L VL+ + +Y E S
Sbjct: 103 RLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSS 162
Query: 276 FKSIPDAFWWAVVTMTTVGYGDM 298
KS+ DA WWAVVT TTVGYGD+
Sbjct: 163 IKSVFDALWWAVVTATTVGYGDV 185
Score = 79.2 bits (196), Expect = 2e-17
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 350 VVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
V+ + A+Y E NS KS+ DA WWAVVT TTVGYGD+
Sbjct: 144 VLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 185
Score = 53.8 bits (130), Expect = 1e-08
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 330 KSIPDAFWWAVVTMTTVGYG 349
KS+ DA WWAVVT TTVGYG
Sbjct: 164 KSVFDALWWAVVTATTVGYG 183
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 59.3 bits (143), Expect = 4e-10
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 334 DAFWWAVVTMTTVGY--GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
W +T+ T Y LF+ A EN+ S DAF+++V TM T+GYG +
Sbjct: 43 TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102
Score = 56.6 bits (136), Expect = 3e-09
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 244 HVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+ I LF+ + + S DAF+++V TM T+GYG +
Sbjct: 48 VFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102
Score = 40.8 bits (95), Expect = 4e-04
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 273 QSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSI 332
+ + W +T+ T Y + A F + +L S
Sbjct: 35 DDHYHDLLTVSWPVFITLITGLY--LVTNALF--ALA-------YLACGDVIENARPGSF 83
Query: 333 PDAFWWAVVTMTTVGYG 349
DAF+++V TM T+GYG
Sbjct: 84 TDAFFFSVQTMATIGYG 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 6e-09
Identities = 56/356 (15%), Positives = 104/356 (29%), Gaps = 116/356 (32%)
Query: 81 RPSFDAILYYYQSGGRLRRPVNVPLDVFS--EEIK--FYELGDVATNKFREDE------- 129
RP L + G L + VP F +++ F ++ T F D+
Sbjct: 7 RP---LTLSH----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 130 ------GFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLET 183
G++ +P +F + + L E+ L I
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-------------YLEGNDI----- 101
Query: 184 LPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETF-----LIMPSLYCLLTSLLLYSV 238
H K+ ++ + LI+ + + S L +V
Sbjct: 102 -----H-------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 239 ----VMIYVHVLIPILMYIFAG--VVLFSSTVYFAEAGSDQSFFKS----IPDAFWWAVV 288
+ IF G ++ YF E + +++ + D ++
Sbjct: 150 GEGNAQLVA---------IFGGQG----NTDDYFEEL---RDLYQTYHVLVGDLIKFSAE 193
Query: 289 TMTTVGYGDMRCGAFFERGVFCRSRLRK--------------------FLLQ--EYSR-C 325
T++ + + F +G+ L ++Q Y
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 326 FLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDA----FW 377
L+G + P + T G+V +AV AE S SFF S+ A F+
Sbjct: 254 KLLGFT-PGELRSYLKGATGHSQGLV---TAVAIAETDSWESFFVSVRKAITVLFF 305
Score = 41.2 bits (96), Expect = 7e-04
Identities = 43/272 (15%), Positives = 72/272 (26%), Gaps = 110/272 (40%)
Query: 67 YFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG-DVATNKF 125
YF+ LR+ Y ++ S L + LD K + G ++
Sbjct: 169 YFEELRDLY--QTYHVLVGDLI--KFSAETLSELIRTTLDAE----KVFTQGLNI----- 215
Query: 126 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 185
+++ P ++ L P IS +I +
Sbjct: 216 ---LEWLENPS-NTPDKDY------LLSIP-----------ISCPLI----------GVI 244
Query: 186 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHV 245
+ HY V T P L L H
Sbjct: 245 QLAHYVVTAKLLGFT-------PG---------------ELRSYLKGAT--------GHS 274
Query: 246 LIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA----FWWAVVTMTTVGYGDMRCG 301
G+V + V AE S +SFF S+ A F+ +G RC
Sbjct: 275 ---------QGLV---TAVAIAETDSWESFFVSVRKAITVLFF--------IGV---RC- 310
Query: 302 AFFERGVFCRSRLRKFLLQEYSRCFLVGKSIP 333
+ + L +L++ + +P
Sbjct: 311 ----YEAYPNTSLPPSILEDSLE---NNEGVP 335
Score = 30.4 bits (68), Expect = 1.4
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 24/121 (19%)
Query: 62 ARRIRYFD----PLRNEYFFD-----RNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI 112
A+ + ++ ++ Y F N P I + + G R+R N +F
Sbjct: 1642 AQDV--WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--NYSAMIF---- 1693
Query: 113 KFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVI 172
+ + + E KE + S+ F+ + LL + +Q A + + F
Sbjct: 1694 ------ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQPALTLMEKAAFED 1746
Query: 173 L 173
L
Sbjct: 1747 L 1747
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 55.6 bits (133), Expect = 9e-09
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 334 DAFWWAVVTMTTVGY--GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
W + LF+ +A N AF+++V T+ TVGYGDM
Sbjct: 57 KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116
Score = 54.8 bits (131), Expect = 2e-08
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 220 FLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSI 279
MP+ L +++ + + + LF+ +A
Sbjct: 40 AYGMPASV--WRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGF 97
Query: 280 PDAFWWAVVTMTTVGYGDM 298
AF+++V T+ TVGYGDM
Sbjct: 98 VGAFFFSVETLATVGYGDM 116
Score = 41.3 bits (96), Expect = 3e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 317 FLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYG 349
+ L + AF+++V T+ TVGYG
Sbjct: 82 YQLGDAPIANQSPPGFVGAFFFSVETLATVGYG 114
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 54.3 bits (130), Expect = 2e-08
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGS-DQSFFKSIPD 281
+ S S L ++V + L +F + +T+Y + F
Sbjct: 22 LGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGG 81
Query: 282 AFWWAVVTMTTVGYGDM 298
AF+++V T+ TVGYGDM
Sbjct: 82 AFFFSVETLATVGYGDM 98
Score = 52.4 bits (125), Expect = 8e-08
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 334 DAFWWAVVTMTTVGYGV--VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
D W V + + F++ A N F AF+++V T+ TVGYGDM
Sbjct: 39 DLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM 98
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 52.8 bits (127), Expect = 7e-08
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
M + ++ L + + +L+ +L I G F +F E +S+ +
Sbjct: 1 MVLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGF----HFIE---GESWT----VS 49
Query: 283 FWWAVVTMTTVGYGDM 298
+W VT+ TVGYGD
Sbjct: 50 LYWTFVTIATVGYGDY 65
Score = 49.4 bits (118), Expect = 9e-07
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 326 FLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTT 385
++ K +P + + V+++ +A + G +S + +W VT+ T
Sbjct: 6 EIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIAT 59
Query: 386 VGYGDM 391
VGYGD
Sbjct: 60 VGYGDY 65
Score = 45.9 bits (109), Expect = 1e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 326 FLVGKSIPDAFWWAVVTMTTVGYGVVLFSS 355
F+ G+S + +W VT+ TVGYG S+
Sbjct: 40 FIEGESWTVSLYWTFVTIATVGYGDYSPST 69
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 48.5 bits (116), Expect = 8e-08
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 247 IPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
++ + V+++ + + G +S + +W VT+ TVGYGD
Sbjct: 3 ATRILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDY 48
Score = 44.6 bits (106), Expect = 2e-06
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
V+++ +A + G +S + +W VT+ TVGYGD
Sbjct: 12 AVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDY 48
Score = 42.7 bits (101), Expect = 8e-06
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
G+S + +W VT+ TVGYG
Sbjct: 26 GESWTVSLYWTFVTIATVGYG 46
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 47.2 bits (112), Expect = 8e-07
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
M S L +L + +L + + + Y G DA
Sbjct: 4 MLSFILTLKRMLKACLRAWKDKEFQ-VLFVLTFLTLTSGTIFYSTVEG------LRPLDA 56
Query: 283 FWWAVVTMTTVGYGDMR 299
+++VVT+TTVG G+
Sbjct: 57 LYFSVVTLTTVGDGNFS 73
Score = 43.8 bits (103), Expect = 1e-05
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
+ + + + + Y G DA +++VVT+TTVG G+
Sbjct: 27 FQVLFVLTFLTLTSGTIFYSTVEG------LRPLDALYFSVVTLTTVGDGNF 72
Score = 41.1 bits (96), Expect = 1e-04
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
G DA +++VVT+TTVG G
Sbjct: 50 GLRPLDALYFSVVTLTTVGDG 70
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 46.4 bits (110), Expect = 9e-07
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
+ +L +L + L + + + ++ + +G + +S+ DA
Sbjct: 5 LLTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEGL-----------RPIDA 53
Query: 283 FWWAVVTMTTVGYGDM 298
+++VVT+TTVG G+
Sbjct: 54 LYFSVVTLTTVGAGNF 69
Score = 41.8 bits (98), Expect = 3e-05
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
+ + ++ + Y G DA +++VVT+TTVG G+
Sbjct: 24 FQVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNF 69
Score = 39.5 bits (92), Expect = 2e-04
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
G DA +++VVT+TTVG G
Sbjct: 47 GLRPIDALYFSVVTLTTVGAG 67
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 45.2 bits (107), Expect = 1e-06
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
+L + ++ + Y G DA +++VVT+TTVGYGD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDF 52
Score = 42.5 bits (100), Expect = 2e-05
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
+ + ++ + Y G DA +++VVT+TTVGYGD
Sbjct: 7 FQVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDF 52
Score = 39.4 bits (92), Expect = 2e-04
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
G DA +++VVT+TTVGYG
Sbjct: 30 GLRPIDALYFSVVTLTTVGYG 50
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 38.6 bits (89), Expect = 0.003
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 219 TFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKS 278
T + + + LL +++Y+V + ++ ++ A + + +
Sbjct: 36 TLVDLKWRFNLLIFVMVYTVTWL----FFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNG 91
Query: 279 IPDAFWWAVVTMTTVGYGDM 298
AF +++ T TT+GYG
Sbjct: 92 FVSAFLFSIETETTIGYGYR 111
Score = 37.0 bits (85), Expect = 0.009
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 273 QSFFKSIPDAFWWAVVTMTTVGY--GDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGK 330
F ++ D W + + + Y + G + + R + ++ C
Sbjct: 31 TDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLN 90
Query: 331 SIPDAFWWAVVTMTTVGYG 349
AF +++ T TT+GYG
Sbjct: 91 GFVSAFLFSIETETTIGYG 109
Score = 34.3 bits (78), Expect = 0.059
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 331 SIPDAFWWAVVTMTTVGYGVV-LFSSAVYFAEAGSENSF--------------FKSIPDA 375
++ D W + + + Y V LF +++ A A
Sbjct: 36 TLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSA 95
Query: 376 FWWAVVTMTTVGYGDM 391
F +++ T TT+GYG
Sbjct: 96 FLFSIETETTIGYGYR 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.007
Identities = 37/273 (13%), Positives = 68/273 (24%), Gaps = 69/273 (25%)
Query: 101 VNVPLDVFSEEIKFYELGDVATNKFREDEGFIKE-EEKPLPSHEFQRKVWLLFEYPESSQ 159
++V D F + ++ D+ + ++E I R W L E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEE-- 77
Query: 160 AARVVAIISVFVILLSIVIFCLETLPEFKHYK----VFNTTTNGTKIEEDEVPDITDPFF 215
++ FV E + +YK T + + D +
Sbjct: 78 ------MVQKFV----------EEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 216 -----LIETFLIMPSLYCLLTSLL--LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAE 268
+ + Y L L L + + GV+ T +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----------GVLGSGKTWVALD 169
Query: 269 AGSDQSFFKSIPDAFWW----------AVVTMTTVGYGDMRCG---------AFFERGVF 309
+ +W V+ M + R
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 310 CRSRLRKFLLQE-YSRCFLV-----GKSIPDAF 336
++ LR+ L + Y C LV +AF
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Score = 34.8 bits (79), Expect = 0.048
Identities = 30/254 (11%), Positives = 68/254 (26%), Gaps = 74/254 (29%)
Query: 9 PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP------A 62
+ + H H + D + +++ R + L E L +P A
Sbjct: 283 AATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQ-DLP-----REVLTTNPRRLSIIA 334
Query: 63 RRIRYFDPLRNEYFFDRNRPSFDAIL-------------YYYQSGGRLRRPVNVPLDVFS 109
IR + + N I+ + ++P + S
Sbjct: 335 ESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 110 ---EEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAI 166
++ ++ V ++ + L+ + P+ S
Sbjct: 394 LIWFDVIKSDVMVVV--------------------NKLHKYS-LVEKQPKEST------- 425
Query: 167 ISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIE-EDEVPDITDPFF---------- 215
IS+ I L + + E H + + + +D +P D +F
Sbjct: 426 ISIPSIYLELKVKL-ENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 216 --LIETFLIMPSLY 227
E + ++
Sbjct: 484 IEHPERMTLFRMVF 497
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 36.7 bits (84), Expect = 0.008
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 19/131 (14%)
Query: 278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFC-----------------RSRLRKFLLQ 320
A ++A ++T GYG + + R+ + +
Sbjct: 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTR 152
Query: 321 EYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAV 380
F + V + V F + E+ + + ++F++
Sbjct: 153 RPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDW--NFLESFYFCF 210
Query: 381 VTMTTVGYGDM 391
++++T+G GD
Sbjct: 211 ISLSTIGLGDY 221
Score = 29.8 bits (66), Expect = 1.4
Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 173 LLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTS 232
S + F T+ Y ++G K I PF L+ ++ + +T
Sbjct: 94 FTSALFFAS-TVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTR 152
Query: 233 LLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFK---SIPDAFWWAVVT 289
+ + + + + + + + +F + S + + ++F++ ++
Sbjct: 153 RPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFIS 212
Query: 290 MTTVGYGDM 298
++T+G GD
Sbjct: 213 LSTIGLGDY 221
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 36.3 bits (83), Expect = 0.011
Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 26/135 (19%)
Query: 278 SIPDAFWWAVVTMTTVGYGDMRCG---------------------AFFERGVFCRSRLRK 316
+ AF+++ +TT+GYG++ G S LR
Sbjct: 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRH 174
Query: 317 FLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAF 376
+ + + + +G + + + F E+ +A
Sbjct: 175 GIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYM--EDWSK---LEAI 229
Query: 377 WWAVVTMTTVGYGDM 391
++ +VT+TTVG+GD
Sbjct: 230 YFVIVTLTTVGFGDY 244
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 35.5 bits (81), Expect = 0.022
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 219 TFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKS 278
T + + Y LL L + V + ++ ++ I +
Sbjct: 38 TCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGD---DTFKPCVLQVNG 94
Query: 279 IPDAFWWAVVTMTTVGYGDM 298
AF +++ T TT+GYG
Sbjct: 95 FVAAFLFSIETQTTIGYGFR 114
Score = 31.7 bits (71), Expect = 0.40
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 320 QEYSRCFLVGKSIPDAFWWAVVTMTTVGYG 349
+ C L AF +++ T TT+GYG
Sbjct: 83 DTFKPCVLQVNGFVAAFLFSIETQTTIGYG 112
Score = 30.5 bits (68), Expect = 0.88
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 367 SFFKSIPDAFWWAVVTMTTVGYGDM 391
AF +++ T TT+GYG
Sbjct: 90 LQVNGFVAAFLFSIETQTTIGYGFR 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 133 KEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAII 167
K+ K L + K L+ +S+ A + A +
Sbjct: 19 KQALKKLQA---SLK---LYA-DDSAPALAIKATM 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 28.2 bits (63), Expect = 4.2
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 222 IMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFA--GVVLFSSTVYFAEAGSDQSFFKSI 279
+P + ++++L+ M+ V L+ + YIFA LF +F ++
Sbjct: 130 AVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLF--------GERFPEWFGTL 181
Query: 280 PDAF 283
++F
Sbjct: 182 GESF 185
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 28.1 bits (63), Expect = 5.1
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 311 RSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFK 370
R R R+ + Q R K+ + A V T VG V F V + + +
Sbjct: 15 RLRRRQLIRQLLER----DKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVH 70
Query: 371 SIPDAFWWAVV 381
+ + V
Sbjct: 71 TADNYPLLLTV 81
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3 PDB: 2rad_A
Length = 451
Score = 27.9 bits (61), Expect = 6.1
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 25 PHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARR---IRYFDPLRNEYFFDRNR 81
D + + V +F LR N +T L + I P +
Sbjct: 365 SDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLG 424
Query: 82 PSFDAILY 89
+FD ++
Sbjct: 425 KAFDILVQ 432
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 27.9 bits (61), Expect = 8.1
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 150 LLFEYPESSQAARVVAIISVFVILLSIV-IFCLETLPEFKHYKVFNTTTNGTKIEEDEVP 208
+L +Y + AAR ++S I+++ + +P+ VF T N + +E P
Sbjct: 786 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQI-FDAVFECTLNMINKDFEEYP 844
Query: 209 DITDPFFLIETFLIMPSLYCLLTSLLLYS 237
+ FF L + +C L +
Sbjct: 845 EHRTNFF---LLLQAVNSHCFPAFLAIPP 870
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.446
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,444,209
Number of extensions: 398656
Number of successful extensions: 916
Number of sequences better than 10.0: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 86
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)