RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11394
(391 letters)
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 121 bits (305), Expect = 1e-34
Identities = 86/100 (86%), Positives = 95/100 (95%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
QSGGRLRRPVNVPLDVFSEEIKFYELG+ A ++REDEGF
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYELGENAFERYREDEGF 100
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 94.2 bits (234), Expect = 2e-24
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
RV+INV G+R ET TL + P T L + +DP+ NEYFFDR+ F I+ YY
Sbjct: 2 NRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYY 61
Query: 92 QSGGRLRRPVNVPLDVFSEEIKFYELGD 119
+S G+L P +V +F EE++F+ L
Sbjct: 62 RS-GKLHYPTDVCGPLFEEELEFWGLDS 88
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 88.8 bits (220), Expect = 2e-22
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
+V+NVSG RF+T TL ++P+TLLG R ++ P +YFFDR+ F IL +Y++
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERD-FFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 94 GGRLRRPVNVPLDVFSEEIKFYELGD 119
G+L P + + + EE+ F+ L
Sbjct: 61 -GKLHYPRHECISAYDEELAFFGLIP 85
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 62.2 bits (151), Expect = 2e-13
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGY 295
+ + ++ S AE G+ + + P A WWA T TTVGY
Sbjct: 12 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
Score = 61.8 bits (150), Expect = 3e-13
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY 388
++ S AE G+ + + P A WWA T TTVGY
Sbjct: 18 VLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
Score = 42.5 bits (100), Expect = 2e-06
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 331 SIPDAFWWAVVTMTTVGY 348
+ P A WWA T TTVGY
Sbjct: 40 TYPRALWWACETATTVGY 57
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 53.0 bits (127), Expect = 1e-09
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309
+ + ++ S AE G+ + + P A WW+V T TTVGYGD+ + R V
Sbjct: 12 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVA 71
Query: 310 C 310
Sbjct: 72 V 72
Score = 50.3 bits (120), Expect = 1e-08
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 335 AFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
A A V + V ++ S AE G+ + + P A WW+V T TTVGYGD+
Sbjct: 7 AAGAATVLLVIV---LLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 29.9 bits (67), Expect = 0.13
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 330 KSIPDAFWWAVVTMTTVGYG 349
+ P A WW+V T TTVGYG
Sbjct: 39 ITYPRALWWSVETATTVGYG 58
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 48.1 bits (114), Expect = 1e-07
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
MP+ L +++ + + + LF+ +A A
Sbjct: 8 MPASV--WRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGA 65
Query: 283 FWWAVVTMTTVGYGDMRCGAFFERGVFC 310
F+++V T+ TVGYGDM + +
Sbjct: 66 FFFSVETLATVGYGDMHPQTVYAHAIAT 93
Score = 43.0 bits (101), Expect = 5e-06
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 334 DAFWWAVVTMTTVGY--GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
W + LF+ +A N AF+++V T+ TVGYGDM
Sbjct: 22 KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 81
Score = 31.9 bits (72), Expect = 0.038
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 317 FLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYG 349
+ L + AF+++V T+ TVGYG
Sbjct: 47 YQLGDAPIANQSPPGFVGAFFFSVETLATVGYG 79
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 45.4 bits (107), Expect = 8e-07
Identities = 15/71 (21%), Positives = 27/71 (38%)
Query: 230 LTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVT 289
L + + + + I LF+ + + S DAF+++V T
Sbjct: 12 LDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQT 71
Query: 290 MTTVGYGDMRC 300
M T+GYG +
Sbjct: 72 MATIGYGKLIP 82
Score = 43.0 bits (101), Expect = 4e-06
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 334 DAFWWAVVTMTTVGYGVV--LFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
W +T+ T Y V LF+ A EN+ S DAF+++V TM T+GYG +
Sbjct: 21 TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 80
Score = 31.1 bits (70), Expect = 0.068
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 317 FLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYG 349
+L S DAF+++V TM T+GYG
Sbjct: 46 YLACGDVIENARPGSFTDAFFFSVQTMATIGYG 78
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 41.2 bits (97), Expect = 9e-06
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFER 306
++ + V+++ + + G +S + +W VT+ TVGYGD
Sbjct: 5 ILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDYSPSTPLGM 55
Score = 38.1 bits (89), Expect = 1e-04
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
V+++ +A + G +S + +W VT+ TVGYGD
Sbjct: 11 AVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDY 47
Score = 33.9 bits (78), Expect = 0.003
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 326 FLVGKSIPDAFWWAVVTMTTVGYG 349
F+ G+S + +W VT+ TVGYG
Sbjct: 22 FIEGESWTVSLYWTFVTIATVGYG 45
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli
[TaxId: 562]}
Length = 110
Score = 26.1 bits (57), Expect = 3.8
Identities = 6/33 (18%), Positives = 8/33 (24%)
Query: 78 DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSE 110
+ Y + N PL SE
Sbjct: 52 RSVQTRLGREDSEYLARSVPFYAANQPLADISE 84
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
BC3205 {Bacillus cereus [TaxId: 1396]}
Length = 413
Score = 26.5 bits (58), Expect = 6.0
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 15 YPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRY----FDP 70
G + IP D + V F R L E + R + P
Sbjct: 326 TGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAK-RPLLSIGGQILP 384
Query: 71 LRNEYFFDRNRPSFDAILYYYQS 93
+ YF FD I + ++
Sbjct: 385 NSSVYFDTSLLEQFDIIFHIRKT 407
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.446
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,597,974
Number of extensions: 77773
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 23
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)