BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11395
(831 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 180/530 (33%), Positives = 269/530 (50%), Gaps = 30/530 (5%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ IAI+G AC P +++ FW+ + G I E R W + D + G
Sbjct: 39 EPIAIVGXACRFPGDVDSPESFWEFVSGGGDAIAEAPADRG-WEPDPDAR-------LGG 90
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
L FDA FF ISP EA + DPQQRI LE+SW+ +E AG+D L GS TGVF G
Sbjct: 91 XLAAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDPVSLRGSATGVFTGVG 150
Query: 133 GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEA 192
DY D V + G + +V + R++Y GP+ +DTACSS L A+H A
Sbjct: 151 TVDYG-PRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLA 209
Query: 193 LQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252
+S++ E AL GG+ + P + G L+ DG CK F K ADG+ EGA +L
Sbjct: 210 XESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVL 269
Query: 253 MLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLG 312
+L+ LS A + + A+++GSA+ +G SNGLTAP+ Q ++++A + + +
Sbjct: 270 VLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVD 329
Query: 313 YIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGIT 372
Y+E HGTGT+LGDPIE+ H++++ ++ + +GSVK+N+GH +AA+G+
Sbjct: 330 YVEAHGTGTRLGDPIEV-------HALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVA 382
Query: 373 GXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSF 432
G P +L+F + I+ D + ++ + W P E R AGVSSF
Sbjct: 383 GVXKAVLALRHGEXPRTLHFDEPSPQIEWDLGAVSVVSQARSW--PAGERPRR-AGVSSF 439
Query: 433 GSGGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQLLIYVKKYIEWL 492
G GTNAHV++ + P+ VLS + + + + L
Sbjct: 440 GISGTNAHVIV--------EEAPEADEPEPAPDSGPVPLVLSGRDEQAXRAQAGRLADHL 491
Query: 493 NNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKI 542
+E N SLRD L R A R A+V+ +RD+ L+ L + +I
Sbjct: 492 -AREPRN-SLRDTGFTLATRRSAWEHR-AVVVGDRDEALAGLRAVADGRI 538
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 581 WQSGININWSLIDKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDD 627
+ G+ ++WS + LP YPF + YWLP + DD
Sbjct: 867 YAQGVEVDWSPAFADARPVELPVYPFQRQRYWLPIPTGGRARDEDDD 913
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 295 bits (756), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 178/529 (33%), Positives = 271/529 (51%), Gaps = 34/529 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPL----EIDIKNKHKG-IN 69
IAI+ +AC LP G+NT + W++L++G + R W L D N ++
Sbjct: 8 IAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRG-WDLARLHHPDPDNPGTSYVD 66
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
G FL D FDA FF +SP EA +MDPQQR+LLE SW+ +E+AG D L G+ TGVF+
Sbjct: 67 KGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFL 126
Query: 130 GASGSDY---TRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
G + Y T D V + G + AV + RISY GPS+ +DTACSSSL
Sbjct: 127 GVAKFGYGEDTAAAED-----VEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSL 181
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRG 246
VA+H A++S++ GESS A+VGG ++ P + + + L+ DG K F ADG+
Sbjct: 182 VALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFS 241
Query: 247 EGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNI 306
EG +++L+ LS A + + A+++GSA+ +G SNGL+AP+ Q ++++A +
Sbjct: 242 EGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGL 301
Query: 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLE 366
+ + +E HGTGT LGDPIE L + TY ++ ++ LGSVK+N+GH +
Sbjct: 302 EPGDVDAVEAHGTGTALGDPIEANALLD------TYGRD-RDADRPLWLGSVKSNIGHTQ 354
Query: 367 AASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRI 426
AA+G+TG PA+L+ ++ + ++ Q W + + R
Sbjct: 355 AAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPW---RRGERTRR 411
Query: 427 AGVSSFGSGGTNAHVVLXXXXXXXXXXXXXXXXXXXXXXTLPLIFVLSAKTKSQLLIYVK 486
A VS+FG GTNAHV++ P+ V+SA++ + L
Sbjct: 412 AAVSAFGISGTNAHVIVEEAPEREHRETTAHDGR-------PVPLVVSARSTAALRAQAA 464
Query: 487 KYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLN 535
+ E L E + L + L L R R A+V R++ + L
Sbjct: 465 QIAELL---ERPDADLAGVGLGLATTRARHEHRAAVVASTREEAVRGLR 510
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 574 FKKIAILWQSGININWSLIDKKNIRISLPTYPFSKYYYWL 613
+ +A SG++I W + +LPTYPF + YWL
Sbjct: 843 LRSMATAHVSGVDIRWDVALPGAAPFALPTYPFQRKRYWL 882
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 256 bits (655), Expect = 3e-68, Method: Composition-based stats.
Identities = 158/437 (36%), Positives = 243/437 (55%), Gaps = 40/437 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+++ I G++ LP+ N L +FW L G ++ ++ RW L + K
Sbjct: 2 EEVVIAGMSGKLPESEN-LEEFWANLIGGVDMVTA-DDRRWKAGLYGLPRRMGK------ 53
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
LKD+ FDA FF + +A +MDPQ R+LLE++++ I D G + + L G++TGV++G S
Sbjct: 54 -LKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVS 112
Query: 133 GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEA 192
SD + LS + V + IG A++ANR+S+F++F GPS+ IDTACSSSL+A+ A
Sbjct: 113 SSDASEALSRDPETLV-GYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSA 171
Query: 193 LQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252
Q+I+ GE S A+VGG+N++L P++++ + K GMLS+DG C++FD GY R E V +
Sbjct: 172 YQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAV 231
Query: 253 MLKPLSVALNDHDNIYAIIKGSAITHNG-QSNGLTAPNPIQQSYLLQKAWNESNIDVRSL 311
+L S+A +YA I + +G + G+T P+ Q L++ + + D SL
Sbjct: 232 LLTKKSLA----RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESL 287
Query: 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371
YIE HGTGTK+GDP E+ G+ NA + E +GS K+N+GH E ASG+
Sbjct: 288 EYIEAHGTGTKVGDPQELNGIVNALCA---------TRREPLLIGSTKSNMGHPEPASGV 338
Query: 372 TGXXXXXXXXXXXXXPASLNFYNLNKNI-KLDDSHLYIIDHLQDWVKPKYENKLRI---- 426
+L+++ N I L D L ++D +P L I
Sbjct: 339 AALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVD------RP-----LPIRGGN 387
Query: 427 AGVSSFGSGGTNAHVVL 443
G++SFG GG+N HV+L
Sbjct: 388 VGINSFGFGGSNVHVIL 404
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 252 bits (643), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 238/433 (54%), Gaps = 32/433 (7%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+++ I G++ LP+ N L +FW L G ++ + ++ RW L + K
Sbjct: 4 EEVVIAGMSGKLPESEN-LQEFWDNLIGGVDMVTD-DDRRWKAGLYGLPRRSGK------ 55
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
LKD+ FDA FF + P +A +MDPQ R+LLE++++ I D G + L G++TGV++G S
Sbjct: 56 -LKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVS 114
Query: 133 GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEA 192
GS+ + LS + V + +G A++ANR+S+F++F GPS+ +DTACSSSL+A+ A
Sbjct: 115 GSETSEALSRDPETLVG-YSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNA 173
Query: 193 LQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVML 252
Q+I +G+ A+VGGIN++L P+ ++ + + GMLS +G CK FD +GY R EG V +
Sbjct: 174 YQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAV 233
Query: 253 MLKPLSVALNDHDNIYAIIKGSAITHNG-QSNGLTAPNPIQQSYLLQKAWNESNIDVRSL 311
+L S+A +YA I + +G + G+T P+ Q L++ + + + S
Sbjct: 234 LLTKKSLA----RRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESF 289
Query: 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371
YIE HGTGTK+GDP E+ G+ A E +GS K+N+GH E ASG+
Sbjct: 290 EYIEAHGTGTKVGDPQELNGITRAL---------CATRQEPLLIGSTKSNMGHPEPASGL 340
Query: 372 TGXXXXXXXXXXXXXPASLNFYNLNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVS 430
+L+F++ N I L D L ++D + G++
Sbjct: 341 AALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQ-------PLPVRGGNVGIN 393
Query: 431 SFGSGGTNAHVVL 443
SFG GG+N H++L
Sbjct: 394 SFGFGGSNVHIIL 406
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 26/288 (9%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A ++S Y GP+ + TAC++ AV ++ + I +G++ + GG + + P + +
Sbjct: 168 AGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGF 227
Query: 222 YKAGMLSRDG----ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT 277
+A LS + C+ F DG+V GEGA +L+L+ A+ IYA + G ++
Sbjct: 228 SRARALSTNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLS 287
Query: 278 HNGQSNGLTAPNPIQQSYL--LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA 335
G + +TAP+P + L + A ++ + + YI H T T LGD E + +K+
Sbjct: 288 --GDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHL 345
Query: 336 FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNL 395
F K+ + S K GHL A+G P +LN
Sbjct: 346 F----------KDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCS 395
Query: 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
L+ Y+ Q+W K E + I +SFG GGTNA + +
Sbjct: 396 EPEFDLN----YVPLKAQEW---KTEKRF-IGLTNSFGFGGTNATLCI 435
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A ++S Y GP+ + TA ++ AV ++ + I +G++ + GG + + P + +
Sbjct: 174 AGQVSIRYKLKGPNHAVSTAXTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGF 233
Query: 222 YKAGMLSRDG----ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT 277
+A LS + C+ F DG+V GEGA +L+L+ A+ IYA + G ++
Sbjct: 234 SRARALSTNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLS 293
Query: 278 HNGQSNGLTAPNPIQQSYL--LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA 335
G + +TAP+P + L + A ++ + + YI H T T LGD E + +K+
Sbjct: 294 --GDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHL 351
Query: 336 FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNL 395
F K+ + S K GHL A+G P +LN
Sbjct: 352 F----------KDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCS 401
Query: 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
L+ Y+ Q+W K E + I +SFG GGTNA + +
Sbjct: 402 EPEFDLN----YVPLKAQEW---KTEKRF-IGLTNSFGFGGTNATLCI 441
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 182/444 (40%), Gaps = 61/444 (13%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K + + GL P G NTL +W+ L +G + I + + FG
Sbjct: 7 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITR----------FDASDQACRFGG 55
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+KD FDA F + EA+ MD + S + I DA ++L+ GV IG +
Sbjct: 56 EVKD---FDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIG-T 110
Query: 133 GSDYTRLLSDYIKIPVN--AHHC----IGNSMAVLANRISYF-YNFTGPSLLIDTACSSS 185
G ++L D I ++ C I +A +A+ ++ GP+ TAC++
Sbjct: 111 GIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAG 170
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS-RDG----ICKTFDKNA 240
A+ +A + ++NG + + GG + P + + A LS R+ + FDK+
Sbjct: 171 SNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDR 230
Query: 241 DGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKA 300
DG+V GEG+ +L+L+ L AL IY + G A+T + +TAP P + A
Sbjct: 231 DGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYH--ITAPVPDGRGATRAIA 288
Query: 301 W--NESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSV 358
W +S + + YI HGT T D E + +K A + N + S
Sbjct: 289 WALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQA----------LGNHAYNIAVSST 338
Query: 359 KTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLD----DSHLYIIDHLQD 414
K+ GHL SG P ++N N + LD S I+D
Sbjct: 339 KSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQSRALIVD---- 394
Query: 415 WVKPKYENKLRIAGVSSFGSGGTN 438
+A +SFG GG N
Sbjct: 395 -----------VALSNSFGFGGHN 407
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 31/282 (10%)
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
I+ Y FTGPS + TAC++ A+ AL+ I+ GE+ L GG + P A+
Sbjct: 144 IAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVM 203
Query: 225 GMLSR-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHN 279
LS + + F + DG+V GEGA +L+L+ A IYA + G +
Sbjct: 204 RALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVG--FGRS 261
Query: 280 GQSNGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFH 337
++ +T P+P + L +A ++ I +GYI HGT T +GD E+ +K F
Sbjct: 262 ADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVF- 320
Query: 338 SIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNK 397
+ ++ + S K+ +GHL A+G P ++N + +
Sbjct: 321 ---------GDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDP 371
Query: 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNA 439
+ L D+V E K+ A +SF GG NA
Sbjct: 372 ELDL------------DFVPEPREAKVDYALSNSFAFGGHNA 401
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 169/380 (44%), Gaps = 59/380 (15%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K + I G+ P G N + W+ KG + I+++ I + ++
Sbjct: 28 KRVVITGMGALSPIG-NDVKTTWENALKGVNGIDKITR----------IDTEPYSVHLAG 76
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
LK+ D I EA MD + + + + ++DA D ++ + GV+IG+
Sbjct: 77 ELKNFNIED----HIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSG 132
Query: 133 -GSDYT-------------RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLI 178
G T R +S + +P+ + MA ++S GP+
Sbjct: 133 IGGMETFEIAHKQLMDKGPRRVSPFF-VPM-----LIPDMAT--GQVSIDLGAKGPNGAT 184
Query: 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINL-ILHPSNTIAYYKA--GMLSRDGI--- 232
TAC++ ++ EA + ++ G++ + GG I H + IA + A + + D I
Sbjct: 185 VTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMA--IAGFSASRALSTNDDIETA 242
Query: 233 CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQ 292
C+ F + DG+V GEGA +L+++ L A NIYA I G T G + +TAP P
Sbjct: 243 CRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTT--GDAYHITAPAPEG 300
Query: 293 Q--SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFY 350
+ S +Q A +++ I+ + + Y+ HGT T +GD E++ +KN F + K
Sbjct: 301 EGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLK------ 354
Query: 351 EKCGLGSVKTNLGHLEAASG 370
+ S K+ GHL A+G
Sbjct: 355 ----VSSTKSMTGHLLGATG 370
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 152/376 (40%), Gaps = 56/376 (14%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELN-----ESRWIWPLEIDIKNKHKG 67
+ + I G+ P G N +FW++L G + ++ R E D +G
Sbjct: 3 RRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 68 INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGV 127
FG P E + MD + + + + +G D L + GV
Sbjct: 62 --FG-----------------PRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGV 102
Query: 128 FIGASGSDYTRLLSDYIKIPVNAHHCIGNSM------------AVLANRISYFYNFTGPS 175
+G++ + T L +Y+ + + ++ +V+ +++ GP
Sbjct: 103 SLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPV 162
Query: 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA--GMLSR---- 229
++ T C+S L +V A+++I+ G + G + + P +A + A +R
Sbjct: 163 TMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPI-VVACFDAIRATTARNDDP 221
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNG-QSNGLTAP 288
+ + FD DG+V EGA M +L+ AL I+A I G A N GL A
Sbjct: 222 EHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA- 280
Query: 289 NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKN 348
+ + + ++ A +ES D + YI HG+GT+ +N H YK+ +
Sbjct: 281 DGREMAETIRVALDESRTDATDIDYINAHGSGTR----------QNDRHETAAYKRALGE 330
Query: 349 FYEKCGLGSVKTNLGH 364
+ + S+K+ +GH
Sbjct: 331 HARRTPVSSIKSMVGH 346
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 181/450 (40%), Gaps = 62/450 (13%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKIL---KKGSSVIEELNESRWIWPLEIDIKNKHKGIN 69
+ + + GL P G NT+ WK L + G S+I+ + S +
Sbjct: 3 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYA-------------TK 48
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
F +KD C D IS E MD + + + ++D+G + ++ + + G I
Sbjct: 49 FAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAI 104
Query: 130 GASG-------SDYTRLLSDYIK--IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
G+ ++T L++ + P I N ++A ++ Y GPS+ I T
Sbjct: 105 GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN---MVAGHLTIMYGLRGPSISIAT 161
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKT 235
AC+S + + A + I G++ + GG P + A LS +
Sbjct: 162 ACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRP 221
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQ 293
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P N
Sbjct: 222 WDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYH--MTSPPENGAGA 279
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ + A ++ I+ +GY+ HGT T GD E Q +K F + +
Sbjct: 280 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS----------RV 329
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ S K+ GHL A+G P ++N N ++ LD + H
Sbjct: 330 LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLD-----FVPHEA 384
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
V + + +SFG GGTN ++
Sbjct: 385 RQV-----SGMEYTLCNSFGFGGTNGSLIF 409
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 36/289 (12%)
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
+S Y GP+ + TACS+ A+ +A + I G++ L GG ++ + +
Sbjct: 157 VSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVMLAGGTESPINRISLAGFSAC 216
Query: 225 GMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH 278
LS + + +D + DG+V GEGA +++L+ L A IYA I G ++
Sbjct: 217 RALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLS- 275
Query: 279 NGQSNGLTAPNP----IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKN 334
G + +TAP+ Q+S + A + ++V L YI HGT T + D IE+
Sbjct: 276 -GDAYHITAPSESGEGAQRS--MMAALKRAQVNVSELDYINAHGTST-MADVIELA---- 327
Query: 335 AFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYN 394
A ++ Y + + + S K+++GHL A+G PA+LN N
Sbjct: 328 AVERVLGY------YAPQVSMSSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAPATLNLEN 381
Query: 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ K+D ++ H KP+ E K+ +SFG GGTNA +V+
Sbjct: 382 PSIETKID-----LVPH-----KPR-ERKIDTVLSNSFGFGGTNASLVM 419
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 181/450 (40%), Gaps = 62/450 (13%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKIL---KKGSSVIEELNESRWIWPLEIDIKNKHKGIN 69
+ + + GL P G NT+ WK L + G S+I+ + S +
Sbjct: 18 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYA-------------TK 63
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
F +KD C D IS E MD + + + ++D+G + ++ + + G I
Sbjct: 64 FAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAI 119
Query: 130 GASG-------SDYTRLLSDYIK--IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
G+ ++T L++ + P I N ++A ++ Y GPS+ I T
Sbjct: 120 GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN---MVAGHLTIMYGLRGPSISIAT 176
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKT 235
AC+S + + A + I G++ + GG P + A LS +
Sbjct: 177 ACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRP 236
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQ 293
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P N
Sbjct: 237 WDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYH--MTSPPENGAGA 294
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ + A ++ I+ +GY+ HGT T GD E Q +K F + +
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS----------RV 344
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ S K+ GHL A+G P ++N N ++ LD + H
Sbjct: 345 LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLD-----FVPHEA 399
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
V + + +SFG GGTN ++
Sbjct: 400 RQV-----SGMEYTLCNSFGFGGTNGSLIF 424
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 18/229 (7%)
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILH--PSNTIAYYKAGMLSRD----GIC 233
+AC+S A+ A Q I GE+ A+ GG+ + P A + M + + G C
Sbjct: 185 SACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 244
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ 293
+ FD++ DG+V GEG +L+++ A NI A I G++IT +G PN +
Sbjct: 245 RPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERA 304
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ + +A + + + ++ H TGT++GD E + + NA N Y
Sbjct: 305 GHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNAL------GGNRPAVY--- 355
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLD 402
+ K+ LGH A G P +LN NL+ I LD
Sbjct: 356 ---APKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLD 401
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 180/450 (40%), Gaps = 62/450 (13%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKIL---KKGSSVIEELNESRWIWPLEIDIKNKHKGIN 69
+ + + GL P G NT+ WK L + G S+I+ + S +
Sbjct: 18 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYA-------------TK 63
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
F +KD C D IS E MD + + + ++D+G + ++ + + G I
Sbjct: 64 FAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAI 119
Query: 130 GASG-------SDYTRLLSDYIK--IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
G+ ++T L++ + P I N ++A ++ Y GPS+ I T
Sbjct: 120 GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN---MVAGHLTIMYGLRGPSISIAT 176
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKT 235
AC+S + + A + I G++ + GG P + A LS +
Sbjct: 177 ACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRP 236
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQ 293
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P N
Sbjct: 237 WDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYH--MTSPPENGAGA 294
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ + A ++ I+ +GY+ HGT T GD E Q +K F + +
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS----------RV 344
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ S + GHL A+G P ++N N ++ LD + H
Sbjct: 345 LVSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLD-----FVPHEA 399
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
V + + +SFG GGTN ++
Sbjct: 400 RQV-----SGMEYTLCNSFGFGGTNGSLIF 424
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 180/450 (40%), Gaps = 62/450 (13%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKIL---KKGSSVIEELNESRWIWPLEIDIKNKHKGIN 69
+ + + GL P G NT+ WK L + G S+I+ + S +
Sbjct: 18 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYA-------------TK 63
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
F +KD C D IS E MD + + + ++D+G + ++ + + G I
Sbjct: 64 FAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAI 119
Query: 130 GASG-------SDYTRLLSDYIK--IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
G+ ++T L++ + P I N ++A ++ Y GPS+ I T
Sbjct: 120 GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN---MVAGHLTIMYGLRGPSISIAT 176
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKT 235
A +S + + A + I G++ + GG P + A LS +
Sbjct: 177 AATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRP 236
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQ 293
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P N
Sbjct: 237 WDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYH--MTSPPENGAGA 294
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ + A ++ I+ +GY+ HGT T GD E Q +K F + +
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS----------RV 344
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ S K+ GHL A+G P ++N N ++ LD + H
Sbjct: 345 LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLD-----FVPHEA 399
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
V + + +SFG GGTN ++
Sbjct: 400 RQV-----SGMEYTLCNSFGFGGTNGSLIF 424
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 32/290 (11%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
+ +S + GP+ + TAC++ A+ +A + I G++ + GG + + +
Sbjct: 158 SGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGF 217
Query: 222 YKAGMLSRD------GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
LS + + +D++ DG+V GEGA +++L+ L AL IYA + G
Sbjct: 218 AACKALSTERNDDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYG 277
Query: 276 ITHNGQSNGLTAPNPIQQS--YLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLK 333
++ G + +TAP + + A + I + YI HGT T + D IE+ +
Sbjct: 278 MS--GDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAV- 333
Query: 334 NAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFY 393
++ + K + S K+++GHL A+G PA+LN
Sbjct: 334 ---------ERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLD 384
Query: 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
N ++D ++ H KP+ E K+ +A +SFG GGTNA +VL
Sbjct: 385 NPAAQTRID-----LVPH-----KPR-ERKIDVALSNSFGFGGTNASLVL 423
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 180/450 (40%), Gaps = 62/450 (13%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKIL---KKGSSVIEELNESRWIWPLEIDIKNKHKGIN 69
+ + + GL P G NT+ WK L + G S+I+ + S +
Sbjct: 18 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYA-------------TK 63
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
F +KD C D IS E MD + + + ++D+G + ++ + + G I
Sbjct: 64 FAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAI 119
Query: 130 GASG-------SDYTRLLSDYIK--IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
G+ ++T L++ + P I N ++A ++ Y GPS+ I T
Sbjct: 120 GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN---MVAGHLTIMYGLRGPSISIAT 176
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKT 235
A +S + + A + I G++ + GG P + A LS +
Sbjct: 177 AQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRP 236
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAP--NPIQQ 293
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P N
Sbjct: 237 WDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYH--MTSPPENGAGA 294
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ + A ++ I+ +GY+ HGT T GD E Q +K F + +
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS----------RV 344
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ S K+ GHL A+G P ++N N ++ LD + H
Sbjct: 345 LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLD-----FVPHEA 399
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
V + + +SFG GGTN ++
Sbjct: 400 RQV-----SGMEYTLCNSFGFGGTNGSLIF 424
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 119/292 (40%), Gaps = 35/292 (11%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A +IS + F GP TAC++S+ A+ +A++ I+ GE+ L GG + +
Sbjct: 173 AGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGF 232
Query: 222 YKAGMLSRD------GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
A LS + FD++ DG+V GEGA M++++ L AL A I G
Sbjct: 233 AAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYG 292
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQK---AWNESNIDVRSLGYIECHGTGTKLGDPIEIQGL 332
T + +TA P S ++ A ++ + Y+ H T T +GD EI+ L
Sbjct: 293 TTADAYH--MTA-GPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEAL 349
Query: 333 KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNF 392
K F + S K+ GHL A+G P +LN
Sbjct: 350 KTVF-----------GVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNL 398
Query: 393 YNLNKNIKLDDSHLYIIDHLQDWVKPKYEN-KLRIAGVSSFGSGGTNAHVVL 443
+ + D L D + P + + IA + FG GG NA V+
Sbjct: 399 EHPDPA----------ADGL-DLIGPAARHVPVEIALSNGFGFGGVNASVLF 439
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 28/290 (9%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
+ +S Y F GP+ TAC++ ++ +A + I+ G++ + GG + + +
Sbjct: 159 SGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGF 218
Query: 222 YKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
++ LS + FD + DG+V GEG+ +++L+ A IYA + G
Sbjct: 219 SRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYG 278
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQ--KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLK 333
++ G ++ +T P + +L +A +S + + Y+ H T T +GD +E + +K
Sbjct: 279 MS--GDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIK 336
Query: 334 NAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFY 393
F T S K GHL A+G P +LN
Sbjct: 337 TVFSEHATSG--------TLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVK 388
Query: 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
N + I D + + +R A +SFG GGTNA ++
Sbjct: 389 NPDP----------IFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLF 428
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 118/292 (40%), Gaps = 35/292 (11%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A +IS + F GP TA ++S+ A+ +A++ I+ GE+ L GG + +
Sbjct: 173 AGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGF 232
Query: 222 YKAGMLSRD------GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
A LS + FD++ DG+V GEGA M++++ L AL A I G
Sbjct: 233 AAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYG 292
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQK---AWNESNIDVRSLGYIECHGTGTKLGDPIEIQGL 332
T + +TA P S ++ A ++ + Y+ H T T +GD EI+ L
Sbjct: 293 TTADAYH--MTA-GPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEAL 349
Query: 333 KNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNF 392
K F + S K+ GHL A+G P +LN
Sbjct: 350 KTVF-----------GVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNL 398
Query: 393 YNLNKNIKLDDSHLYIIDHLQDWVKPKYEN-KLRIAGVSSFGSGGTNAHVVL 443
+ + D L D + P + + IA + FG GG NA V+
Sbjct: 399 EHPDPA----------ADGL-DLIGPAARHVPVEIALSNGFGFGGVNASVLF 439
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 19/210 (9%)
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
+S F++ G + +AC+S A+ A ++I G+ + L GG + P+ +
Sbjct: 151 VSLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEELSGPAVAVFDTLY 210
Query: 225 GMLSRDG----ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNG 280
+R+ + FD DG V GEGA L+L+ A I+A I G +G
Sbjct: 211 ATSTRNDEPHLTPRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDG 270
Query: 281 QSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSII 340
+T P + +Q A ++ +D ++ Y+ HGT T GD E Q
Sbjct: 271 AH--MTQPTASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQ---------- 318
Query: 341 TYKKNIKNFYEKCGLGSVKTNLGHLEAASG 370
+ F E+ + S+K+ +GH A G
Sbjct: 319 ---ATARTFGERMPISSLKSYVGHTLGACG 345
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDG 231
I+TACSSS A+ +A +SIK G LVGG + P + LS R
Sbjct: 179 INTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRAS 238
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
I FDK+ +G+V GEG+ ML+L+ L A I A + G T + +T+P+P
Sbjct: 239 I--PFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH--MTSPHPE 294
Query: 292 QQSYL--LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
Q + ++ A E+ I + Y+ HGT T P +G A +++
Sbjct: 295 GQGAIKAIKLALEEAEISPEQVAYVNAHGTST----PANEKGESGAIVAVLG-------- 342
Query: 350 YEKCGLGSVKTNLGHLEAASG 370
++ + S K+ GHL A+G
Sbjct: 343 -KEVPVSSTKSFTGHLLGAAG 362
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 104/265 (39%), Gaps = 35/265 (13%)
Query: 188 AVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS----RDGICKTFDKNADGY 243
++ +A + I+ G++ + GG + + + LS + C+ FDK+ DG+
Sbjct: 170 SIGDAFKVIERGDADAXITGGAEAPITKXSLAGFTANKALSLNPDPETACRPFDKDRDGF 229
Query: 244 VRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNE 303
+ GEGA +++L+ A IYA I G T + APN + + A ++
Sbjct: 230 IIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDD 289
Query: 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLG 363
+ + + YI HGT T D E Q +K F +K + S K+ G
Sbjct: 290 AGLTPDKVDYINAHGTSTPYNDEYETQAIKTVF----------GEHAKKLAISSTKSXTG 339
Query: 364 HLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENK 423
H ASG A + NI HL D + D N+
Sbjct: 340 HTLGASG--------------GIEAIFALLTIRDNIIAPTIHLKNQDEVCDL--DYVPNE 383
Query: 424 LRIAGV-----SSFGSGGTNAHVVL 443
R A V +SFG GG NA +V
Sbjct: 384 AREANVNVVISNSFGFGGHNATLVF 408
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDG 231
I+TACSSS A+ +A +SIK G LVGG + P + LS R
Sbjct: 179 INTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRAS 238
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
I FDK+ +G+V GEG+ ML+L+ L A I A + G T + +T+P+P
Sbjct: 239 I--PFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH--MTSPHPE 294
Query: 292 QQSYL--LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
Q + ++ A E+ I + Y+ HGT T P +G A +++
Sbjct: 295 GQGAIKAIKLALEEAEISPEQVAYVNAHGTST----PANEKGESGAIVAVLG-------- 342
Query: 350 YEKCGLGSVKTNLGHLEAASG 370
+ + S K+ GHL A+G
Sbjct: 343 -KAVPVSSTKSFTGHLLGAAG 362
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 148/356 (41%), Gaps = 54/356 (15%)
Query: 108 KTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVN------AHHCIGNSMAVL 161
+ I DAG ++S TG+ +G SG TR + D I + +M+
Sbjct: 85 QAIADAGLTEEEVSNERTGIIMG-SGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSST 143
Query: 162 AN-RISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIA 220
A+ ++ F+ G + I +AC++S + A + I+ G+ + GG L + ++
Sbjct: 144 ASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCE-DLDWTLSVL 202
Query: 221 YYKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGS 274
+ G +S + +DKN DG+V GA +L+L+ L AL IY I G
Sbjct: 203 FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGY 262
Query: 275 AITHNGQSNGLTAPNPIQQSYLLQKAWN--ESNIDVRSLGYIECHGTGTKLGDPIEIQGL 332
T +G + AP+ ++ A + S ID YI H T T GD EI+ +
Sbjct: 263 GATSDGYD--MVAPSGEGAIRCMKMALSTVTSKID-----YINPHATSTPAGDAPEIEAI 315
Query: 333 KNAFHSIITYKKNIKNFYEKC-GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLN 391
+ F + + C + + K+ GH A+G+ A +
Sbjct: 316 RQIFGA-----------GDVCPPIAATKSLTGHSLGATGV--------------QEAIYS 350
Query: 392 FYNLNKNIKLDDSHLYIIDHL---QDWVKPKYEN-KLRIAGVSSFGSGGTNAHVVL 443
+ N + +H+ +D V+ + +N +L +SFG GGTNA +V
Sbjct: 351 LLMMQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVF 406
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 148/356 (41%), Gaps = 54/356 (15%)
Query: 108 KTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVN------AHHCIGNSMAVL 161
+ I DAG ++S TG+ +G SG TR + D I + +M+
Sbjct: 102 QAIADAGLTEEEVSNERTGIIMG-SGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSST 160
Query: 162 AN-RISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIA 220
A+ ++ F+ G + I +AC++S + A + I+ G+ + GG L + ++
Sbjct: 161 ASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCE-DLDWTLSVL 219
Query: 221 YYKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGS 274
+ G +S + +DKN DG+V GA +L+L+ L AL IY I G
Sbjct: 220 FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGY 279
Query: 275 AITHNGQSNGLTAPNPIQQSYLLQKAWN--ESNIDVRSLGYIECHGTGTKLGDPIEIQGL 332
T +G + AP+ ++ A + S ID YI H T T GD EI+ +
Sbjct: 280 GATSDGYD--MVAPSGEGAIRCMKMALSTVTSKID-----YINPHATSTPAGDAPEIEAI 332
Query: 333 KNAFHSIITYKKNIKNFYEKC-GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLN 391
+ F + + C + + K+ GH A+G+ A +
Sbjct: 333 RQIFGA-----------GDVCPPIAATKSLTGHSLGATGV--------------QEAIYS 367
Query: 392 FYNLNKNIKLDDSHLYIIDHL---QDWVKPKYEN-KLRIAGVSSFGSGGTNAHVVL 443
+ N + +H+ +D V+ + +N +L +SFG GGTNA +V
Sbjct: 368 LLMMQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVF 423
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS------RDG 231
I+TACSSS A+ +A +SIK G LVGG + P + LS R
Sbjct: 180 INTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRAS 239
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
I FDK+ +G+V GEG+ ML+L+ L A I A + G T + +T+P+P
Sbjct: 240 I--PFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH--MTSPHPE 295
Query: 292 QQSYL--LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
Q + ++ A E+ I + Y+ GT T P +G A +++
Sbjct: 296 GQGAIKAIKLALEEAEISPEQVAYVNAAGTST----PANEKGESGAIVAVLG-------- 343
Query: 350 YEKCGLGSVKTNLGHLEAASG 370
++ + S K+ GHL A+G
Sbjct: 344 -KEVPVSSTKSFTGHLLGAAG 363
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 148/385 (38%), Gaps = 49/385 (12%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKIL---KKGSSVIEELNESRWIWPLEIDIKNKHKGIN 69
K + I G+ P G+ L+ +W + + G + + SR+ L I + H +
Sbjct: 9 KSVLITGVGVVAPNGLG-LAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDH 67
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
L DP R+ L + ++DA D L+ + GV
Sbjct: 68 IPGRLL-----------------PQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVT 110
Query: 130 G--ASGSDYT-----RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTAC 182
G D+T +L S+ K V+ + AV +IS + GPS +
Sbjct: 111 ANACGGFDFTHREFRKLWSEGPKS-VSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQ 169
Query: 183 SSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKTFDK 238
+ L A+ A ++I+ G + + GG++ L P ++ +G +S D FD+
Sbjct: 170 AGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLPFDE 228
Query: 239 NADGYVRGEGAVMLMLK--PLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYL 296
A GYV GEG +L+L+ + A HD Y + G A T + + G P ++++
Sbjct: 229 RAAGYVPGEGGAILVLEDSAAAEARGRHD-AYGELAGCASTFD-PAPGSGRPAGLERAIR 286
Query: 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFH----SIITYKKNIKNFYEK 352
L A N++ + + G G D E + + F + K Y
Sbjct: 287 L--ALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVPVTVPKTTTGRLYSG 344
Query: 353 CGLGSVKTNL-----GHLEAASGIT 372
G V T L G + +G+T
Sbjct: 345 GGPLDVVTALMSLREGVIAPTAGVT 369
>pdb|2LIU|A Chain A, Nmr Structure Of Holo-Acpi Domain From Cura Module From
Lyngbya Majuscula
pdb|2LIW|A Chain A, Nmr Structure Of Hmg-Acpi Domain From Cura Module From
Lyngbya Majuscula
Length = 99
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
L + + +D F+D+GLDSI+ V W IN +L++ +TK+YDYPTL + +I
Sbjct: 34 LYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYI 90
>pdb|2L22|A Chain A, Mupirocin Didomain Acp
Length = 212
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 646 QFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
Q D + F+++GLDS+IA WIR+IN L I + IY YP F +++ +Q
Sbjct: 45 QIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQ 98
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 646 QFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKF 692
Q A F+D+G+DS+ W+R ++ + + + IY +PTL
Sbjct: 149 QLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSL 195
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 31/265 (11%)
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILH--PSNTIAYYKAGMLSR----DGIC 233
+ACSS A+ A + I G++ A+ GG+ + P + +A M +R +
Sbjct: 169 SACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRA-MSTRNDEPERAS 227
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ 293
+ FDK+ DG+V GE +++++ A A + G+ IT + A + ++
Sbjct: 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRA 287
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ ++ + + + ++ HGT T +GD E ++ A ++
Sbjct: 288 GRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVA-------------GCDQA 334
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ + K+ LGH A G P +LN+ + I LD ++
Sbjct: 335 AVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLD-----VVAG-- 387
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTN 438
+P+Y R A +SFG GG N
Sbjct: 388 ---EPRY-GDYRYAVNNSFGFGGHN 408
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 35/272 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DG 231
I +AC++S + A++ I+ G+ GG + + G LS +
Sbjct: 159 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEK 217
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 218 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGE 275
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYE 351
++ A + +D + Y+ HGT T +GD E+ ++ F +
Sbjct: 276 GAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGD------------K 320
Query: 352 KCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDH 411
+ + K GH A+G+ S+N L++ + L I+
Sbjct: 321 SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTE 376
Query: 412 LQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 377 TTD-------RELTTVMSNSFGFGGTNATLVM 401
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 35/272 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DG 231
I +AC++S + A++ I+ G+ GG + + G LS +
Sbjct: 159 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEK 217
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 218 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGE 275
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYE 351
++ A + +D + Y+ HGT T +GD E+ ++ F +
Sbjct: 276 GAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGD------------K 320
Query: 352 KCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDH 411
+ + K GH A+G+ S+N L++ + L I+
Sbjct: 321 SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTE 376
Query: 412 LQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 377 TTD-------RELTTVMSNSFGFGGTNATLVM 401
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 35/272 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DG 231
I +AC++S + A++ I+ G+ GG + + G LS +
Sbjct: 159 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEK 217
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 218 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGE 275
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYE 351
++ A + +D + Y+ HGT T +GD E+ ++ F +
Sbjct: 276 GAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGD------------K 320
Query: 352 KCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDH 411
+ + + GH A+G+ S+N L++ + L I+
Sbjct: 321 SPAISATRAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTE 376
Query: 412 LQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 377 TTD-------RELTTVMSNSFGFGGTNATLVM 401
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ 293
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 220 RTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGEGA 277
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
++ A + +D + Y+ HGT T +GD E+ ++ F +
Sbjct: 278 VRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGD------------KSP 322
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ + K GH A+G+ S+N L++ + L I+
Sbjct: 323 AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTETT 378
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 379 D-------RELTTVMSNSFGFGGTNATLVM 401
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ 293
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 220 RTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGEGA 277
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
++ A + +D + Y+ HGT T +GD E+ ++ F +
Sbjct: 278 VRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGD------------KSP 322
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ + K GH A+G+ S+N L++ + L I+
Sbjct: 323 AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTETT 378
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 379 D-------RELTTVMSNSFGFGGTNATLVM 401
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ 293
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 232 RTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGEGA 289
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
++ A + +D + Y+ HGT T +GD E+ ++ F +
Sbjct: 290 VRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGD------------KSP 334
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ + K GH A+G+ S+N L++ + L I+
Sbjct: 335 AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTETT 390
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 391 D-------RELTTVMSNSFGFGGTNATLVM 413
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 39/274 (14%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DG 231
I +AC++S + A++ I+ G+ GG + + G LS +
Sbjct: 171 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEK 229
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 230 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGE 287
Query: 292 QQSYLLQKAWN--ESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
++ A + ++ ID Y+ HGT T +GD E+ ++ F
Sbjct: 288 GAVRCMKMAMHGVDTPID-----YLNSHGTSTPVGDVKELAAIREVFGD----------- 331
Query: 350 YEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYII 409
+ + + GH A+G+ S+N L++ + L I+
Sbjct: 332 -KSPAISATAAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIV 386
Query: 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 387 TETTD-------RELTTVMSNSFGFGGTNATLVM 413
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 108/265 (40%), Gaps = 31/265 (11%)
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILH--PSNTIAYYKAGMLSR----DGIC 233
+A SS A+ A + I G++ A+ GG+ + P + +A M +R +
Sbjct: 169 SAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRA-MSTRNDEPERAS 227
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ 293
+ FDK+ DG+V GE +++++ A A + G+ IT + A + ++
Sbjct: 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRA 287
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKC 353
+ ++ + + + ++ HGT T +GD E ++ A ++
Sbjct: 288 GRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVA-------------GCDQA 334
Query: 354 GLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDHLQ 413
+ + K+ LGH A G P +LN+ + I LD ++
Sbjct: 335 AVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLD-----VVAG-- 387
Query: 414 DWVKPKYENKLRIAGVSSFGSGGTN 438
+P+Y R A +SFG GG N
Sbjct: 388 ---EPRY-GDYRYAVNNSFGFGGHN 408
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 39/274 (14%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DG 231
I +AC++S + A++ I+ G+ GG + + G LS +
Sbjct: 171 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEK 229
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 230 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGE 287
Query: 292 QQSYLLQKAWN--ESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
++ A + ++ ID Y+ GT T +GD E+ ++ F
Sbjct: 288 GAVRCMKMAMHGVDTPID-----YLNSQGTSTPVGDVKELAAIREVFGD----------- 331
Query: 350 YEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYII 409
+ + + K GH A+G+ S+N L++ + L I+
Sbjct: 332 -KSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIV 386
Query: 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 387 TETTD-------RELTTVMSNSFGFGGTNATLVM 413
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 35/272 (12%)
Query: 178 IDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DG 231
I +AC++S + A++ I+ G+ GG + + G LS +
Sbjct: 171 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEK 229
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPI 291
+T+D + DG+V G M++++ L AL +IYA I G T +G + AP+
Sbjct: 230 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVAPSGE 287
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYE 351
++ A + +D + Y+ GT T +GD E+ ++ F +
Sbjct: 288 GAVRCMKMAMH--GVDT-PIDYLNSEGTSTPVGDVKELAAIREVFGD------------K 332
Query: 352 KCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLDDSHLYIIDH 411
+ + K GH A+G+ S+N L++ + L I+
Sbjct: 333 SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA----AGLNIVTE 388
Query: 412 LQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
D +L +SFG GGTNA +V+
Sbjct: 389 TTD-------RELTTVMSNSFGFGGTNATLVM 413
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 35/280 (12%)
Query: 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
+ G + I +AC++S + AL+ I+ G+ GG + + G LS
Sbjct: 154 FKIKGVNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEELCW-EXACEFDAXGALS 212
Query: 229 RD------GICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQS 282
+T+D++ DG+V G ++++ L AL +IYA I G T +G
Sbjct: 213 TKYNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAHIYAEIVGYGATSDGAD 272
Query: 283 NGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITY 342
AP+ Q A + +D + Y HGT T +GD E+ ++ F +
Sbjct: 273 --XVAPSGEGAVRCXQXAX--AGVDT-PIDYXNVHGTSTPVGDVKELGAIREVFGN---- 323
Query: 343 KKNIKNFYEKCGLGSVKTNLGHLEAASGITGXXXXXXXXXXXXXPASLNFYNLNKNIKLD 402
+ S K GH A+G+ S+N NL++ +
Sbjct: 324 --------NTPAISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSINIDNLDEQAQ-- 373
Query: 403 DSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVV 442
+ + + +L +SFG GGTNA +V
Sbjct: 374 ---------GXNIITETTQRELTTVXSNSFGFGGTNATLV 404
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214
P++ ++ C SS A+H+A + I G++ LVGG+ H
Sbjct: 83 PAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHXGH 123
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 156 NSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHP 215
N+M+ N + + +GP AC++S+ +V +++I +G++ +VGG +
Sbjct: 1281 NTMSAWVNML--LISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 216 -----------SNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDH 264
SNT+ ++ G + + + +G++ +GA + ++ +AL
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAE-MSRPATTTRNGFMEAQGAGIQIIMQADLALKMG 1397
Query: 265 DNIYAIIKGSAITHNGQSNGLTAPN 289
IY I+ +A + + AP
Sbjct: 1398 VPIYGIVAMAATATDKIGRSVPAPG 1422
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 156 NSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHP 215
N+M+ N + + +GP AC++S+ +V +++I +G++ +VGG +
Sbjct: 1281 NTMSAWVNML--LISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 216 -----------SNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDH 264
SNT+ ++ G + + + +G++ +GA + ++ +AL
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAE-MSRPATTTRNGFMEAQGAGIQIIMQADLALKMG 1397
Query: 265 DNIYAIIKGSAITHNGQSNGLTAPN 289
IY I+ +A + + AP
Sbjct: 1398 VPIYGIVAMAATATDKIGRSVPAPG 1422
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 156 NSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHP 215
N+M+ N + + +GP AC++S+ +V +++I +G++ +VGG +
Sbjct: 1082 NTMSAWVNML--LISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1139
Query: 216 -----------SNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDH 264
SNT+ ++ G + + + +G++ +GA + ++ +AL
Sbjct: 1140 GSFEFGNMKATSNTLEEFEHGRTPAE-MSRPATTTRNGFMEAQGAGIQIIMQADLALKMG 1198
Query: 265 DNIYAIIKGSAITHNGQSNGLTAPN 289
IY I+ +A + + AP
Sbjct: 1199 VPIYGIVAMAATATDKIGRSVPAPG 1223
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 158 MAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS 216
MA L +I + T + + C SS+ A+H A Q+I G +VGG+ + H S
Sbjct: 74 MASLMTQIPH----TSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVS 128
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 495 KESLNISLRDLTLQLQKG-RQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
KES+N L++L QLQK R + V F R+D + + +F EK+ I +
Sbjct: 57 KESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITL 108
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 495 KESLNISLRDLTLQLQKG-RQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
KES+N L++L QLQK R + V F R+D + + +F EK+ I +
Sbjct: 57 KESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITL 108
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 17/167 (10%)
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGG-----INLILHPSNTIAYYKAGMLSRDGI--- 232
AC+++ V+V E + IK G++ + GG + I+ + A M+ GI
Sbjct: 2739 ACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDS 2798
Query: 233 --CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP 290
+ D+ G++ +G ++L +AL + A++ + +G + AP
Sbjct: 2799 KFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGL 2858
Query: 291 IQ-------QSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330
+ L ++ + + + I H T T DP E +
Sbjct: 2859 GALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETE 2905
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 115 YDSSKLSGSNTGVFIGA-SGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTG 173
YD+S L+ F+G+ SG++YT +S + ++C+G A SY F G
Sbjct: 49 YDASNLASGVPSRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAA-----SYRTAFGG 103
Query: 174 PSLL--IDTACSSSLVAVHEALQSIKNGESS 202
+ L I T + S+ + + +K+G +S
Sbjct: 104 GTELEIIRTVAAPSVFIFPPSDEQLKSGTAS 134
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
PS ++ C S L +V A QSI +GE+ + GG
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGG 117
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Query: 645 EQFDDDAIFIDMGLDSI----IAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
E FDDD + ID GLDS+ +A W RK++ +D + + PT++ ++K +
Sbjct: 563 EPFDDDNL-IDYGLDSVRMMALAARW-RKVHGDIDFVM----LAKNPTIDAWWKLL 612
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,107,794
Number of Sequences: 62578
Number of extensions: 883631
Number of successful extensions: 2211
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2055
Number of HSP's gapped (non-prelim): 66
length of query: 831
length of database: 14,973,337
effective HSP length: 107
effective length of query: 724
effective length of database: 8,277,491
effective search space: 5992903484
effective search space used: 5992903484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)