RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11395
(831 letters)
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 603 bits (1556), Expect = 0.0
Identities = 204/432 (47%), Positives = 280/432 (64%), Gaps = 14/432 (3%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGIN--FG 71
IAI+G+AC P + +FW+ L +G I E+ E RW K G
Sbjct: 2 PIAIVGMACRFPGAAD-PDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRG 60
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGA 131
FL D++ FDA FF ISP EAE+MDPQQR+LLE++W+ +EDAGY L+GS TGVF+GA
Sbjct: 61 GFLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGA 120
Query: 132 SGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHE 191
S SDY LL+ ++A+ G S A LANRISYF++ GPSL +DTACSSSLVA+H
Sbjct: 121 SSSDYLELLAR-DPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSSSLVALHL 179
Query: 192 ALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVM 251
A QS+++GE ALVGG+NLIL P + + KAGMLS DG C+ FD +ADGYVRGEG +
Sbjct: 180 ACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGV 239
Query: 252 LMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSL 311
++LK LS AL D D IYA+I+GSA+ +G++ G+TAP+ Q+ L+++A+ + +D +
Sbjct: 240 VVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDI 299
Query: 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371
Y+E HGTGT LGDPIE++ L F ++ +GSVK+N+GHLEAA+G+
Sbjct: 300 DYVEAHGTGTPLGDPIEVEALAKVFGG----SRSADQP---LLIGSVKSNIGHLEAAAGL 352
Query: 372 TGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSS 431
G++K++L L++ +P +L+F N I ++S L + + W P R AGVSS
Sbjct: 353 AGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWPAP---AGPRRAGVSS 409
Query: 432 FGSGGTNAHVVL 443
FG GGTNAHV+L
Sbjct: 410 FGFGGTNAHVIL 421
Score = 35.2 bits (82), Expect = 0.14
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDNAIGKLICKK 828
P + + F NLL GR+ +S+I RW D +Y GK ++
Sbjct: 13 PGAADPDEFWENLLEGRDAISEIPEDRWDADGYYP--DPGKPGKTYTRR 59
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 602 bits (1555), Expect = 0.0
Identities = 245/618 (39%), Positives = 330/618 (53%), Gaps = 42/618 (6%)
Query: 10 NLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG-- 67
L + IAIIG+AC P G ++ +FW +LK+G I E+ RW D G
Sbjct: 1 QLIEPIAIIGMACRFP-GADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKS 59
Query: 68 -INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTG 126
+G FL D++ FDA FF ISP EAE+MDPQQR+LLE++W+ +EDAG L GS TG
Sbjct: 60 YSRWGGFLDDVDDFDALFFGISPREAEAMDPQQRLLLEVAWEALEDAGIYPDSLRGSATG 119
Query: 127 VFIGASGSDYT-RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSS 185
VF GAS +DY LL+D P A GNS +V A RISY +GPS+ +DTACSSS
Sbjct: 120 VFAGASVADYLLLLLADDEAEPEYAIT--GNSSSVAAGRISYVLGLSGPSVTVDTACSSS 177
Query: 186 LVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVR 245
LVAVH A QS++ GE AL GG+NL+L P ++ + GMLS DG CK FD +ADGYVR
Sbjct: 178 LVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVR 237
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESN 305
GEGA +++LK LS A D D IYA+I+GSA+ +G+SNGLTAPN Q+ ++++A ++
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAG 297
Query: 306 IDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHL 365
ID ++ Y+E HGTGT LGDPIE L Y + + C +GSVK+N+GHL
Sbjct: 298 IDPATVQYVEAHGTGTPLGDPIEANALGAV------YGEGAPA--QPCAIGSVKSNIGHL 349
Query: 366 EAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLR 425
EAA+GI G++K L LK+ +P +L+F N I D S + W R
Sbjct: 350 EAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPTEATPWPTGGGP---R 406
Query: 426 IAGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYV 485
AGVSSFG GGTNAHV+L E + I + P + VLSAKT +L
Sbjct: 407 RAGVSSFGFGGTNAHVILEEAPPRAESTI----------PSSPRLLVLSAKTAERLAATA 456
Query: 486 KKYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQLNFFYEKKIIPM 545
+ + L + L SL D+ LQ GR RLA+V +R++L + L F K
Sbjct: 457 PRLADRLELQGGLL-SLADVAYTLQAGRPHFEHRLAVVANDREELEAGLRAFAAGKAK-- 513
Query: 546 QDKLDSFNESKNKI------DIATVINLAIKEKNFKKIAILWQSGININWS--LIDKKNI 597
++S K + + + + + + L
Sbjct: 514 ALSGVGADDSGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPE 573
Query: 598 RISLPTYPFSKYYYWLPK 615
I P YPF +
Sbjct: 574 VIFAPDYPF---LESIDF 588
Score = 38.2 bits (89), Expect = 0.022
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDNAIGKLICK 827
P +++ + F + L GR+ ++++ + RW +D +YD GK +
Sbjct: 16 PGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYD-PDPTVPGKSYSR 62
Score = 34.7 bits (80), Expect = 0.21
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 580 LWQSGININWSLIDKKNI--RISLPTYPFSKYYYWLP 614
L+ +G+ ++WS + + LPTYPF + +WL
Sbjct: 837 LFVAGVAVDWSPLVYGPDGRLVELPTYPFQRQRFWLD 873
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 449 bits (1159), Expect = e-153
Identities = 166/431 (38%), Positives = 218/431 (50%), Gaps = 133/431 (30%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G++C P G + +FW +L G L
Sbjct: 1 IAIVGMSCRFP-GADDPEEFWDLLLAG--------------------------------L 27
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
D++ FDA FF ISP EAE+MDPQQR+LLE++W+ +EDAG D L GS TGVF+G S S
Sbjct: 28 DDVDLFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGVSSS 87
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY S+ V DTACSSSLVA+H A Q
Sbjct: 88 DY--------------------SVTV------------------DTACSSSLVALHLACQ 109
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
S+++GE AL GG+NLIL P + +AGMLS DG CKTFD +ADGYVRGEG +++L
Sbjct: 110 SLRSGECDMALAGGVNLILSPDTFVGLSRAGMLSPDGRCKTFDASADGYVRGEGVGVVVL 169
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYI 314
K LS AL D D I A+I+GSA+ +G+SNG+TAP+ Q +G
Sbjct: 170 KRLSDALRDGDPILAVIRGSAVNQDGRSNGITAPSGPAQLL---------------IG-- 212
Query: 315 ECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGI 374
S+ K NI GHLEAA+G+ G+
Sbjct: 213 -----------------------SV---KSNI----------------GHLEAAAGVAGL 230
Query: 375 LKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGS 434
+K++L LK+ +P +L+F N +I L++S L + L W P + R AGVSSFG
Sbjct: 231 IKVVLALKHGVIPPTLHFETPNPHIDLEESPLRVPTELTPWPPP---GRPRRAGVSSFGF 287
Query: 435 GGTNAHVVLSE 445
GGTNAHV+L E
Sbjct: 288 GGTNAHVILEE 298
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 276 bits (707), Expect = 4e-87
Identities = 106/255 (41%), Positives = 138/255 (54%), Gaps = 18/255 (7%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFG 71
+ +AI G+ C P G+ +FW++L G I E + + G
Sbjct: 1 AEPVAITGMGCRFPGGVGP-EEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYG---- 55
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGS-NTGVFIG 130
FDA FF ISP EAE+MDPQQR+ LE +W+ +EDAG D + L GS TGVF+G
Sbjct: 56 ------FDFDAAFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVG 109
Query: 131 ASGSDYT--RLLSDYIKIPVNAH-HCIGNSM-AVLANRISYFYNFTGPSLLIDTACSSSL 186
+ DY + L P + G M +V A RISY GPS+ +DTACSSSL
Sbjct: 110 SGSGDYAELQALDSA-GGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSL 168
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAG-MLSRDGICKTFDKNADGYVR 245
VA+H A++SI+ GE AL GG+ L P + AG +LS DG CK FD ADG+VR
Sbjct: 169 VALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFVR 228
Query: 246 GEGAVMLMLKPLSVA 260
GEG ++LK LS A
Sbjct: 229 GEGVGAVLLKELSEA 243
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 200 bits (511), Expect = 5e-58
Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 28/348 (8%)
Query: 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKI-PVNAHHCIGN 156
+ E + + I DAG GV +G G + + V +
Sbjct: 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKA 70
Query: 157 SMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS 216
+ +I+ GP+ + AC+ SL A+ A +++NG+ L GG + P
Sbjct: 71 MFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPM 130
Query: 217 NTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276
+ + + + +TFD ADG+V G+GA L+++ L AL +IYA I G+A
Sbjct: 131 DCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAA 190
Query: 277 THNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF 336
T +G G AP+ + ++A + + V + Y+ HGTGT +GD E++ L++ F
Sbjct: 191 TIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250
Query: 337 HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLN 396
+ + + K G+L +A+ + + + +L L++ +P S+
Sbjct: 251 GD------------KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSI------ 292
Query: 397 KNIKLDDSHLYIIDHLQDWVKPKY-ENKLRIAGVSSFGSGGTNAHVVL 443
H+ +D + + +LR A ++ FG GGTNA +VL
Sbjct: 293 --------HIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 196 bits (499), Expect = 2e-51
Identities = 153/566 (27%), Positives = 256/566 (45%), Gaps = 74/566 (13%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINF---G 71
IAI+G+A L+KFW ++ + I ++ W D ++ G
Sbjct: 9 IAIVGMASIFANSRY-LNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRG 67
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAG----YDSSKLSGSNTGV 127
FL +++ F+ F + P E D Q + L ++ + + DAG YD K+ G GV
Sbjct: 68 GFLPEVD-FNPMEFGLPPNILELTDISQLLSLVVAKEVLNDAGLPDGYDRDKI-GITLGV 125
Query: 128 FIGA--SGSDYTRL-------------LSD-------------YIKIPVNAH-HCIGNSM 158
G S S RL + D YI N+ +GN
Sbjct: 126 GGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGN-- 183
Query: 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218
V++ RI+ ++ G + ++D AC+ SL A+ AL + G S + GG+ P
Sbjct: 184 -VISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMY 242
Query: 219 IAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITH 278
+++ K + + + FD ++ G + GEG M+ LK L A D D IYA+IKG +
Sbjct: 243 MSFSKTPAFTTNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASS 302
Query: 279 NGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHS 338
+G+ + AP P Q+ L++A++++ + G IE HGTGT GD E GL + F
Sbjct: 303 DGKFKSIYAPRPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQ 362
Query: 339 IITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398
K++I LGSVK+ +GH ++ +G G++K +L L +K LP ++N N
Sbjct: 363 DNDQKQHI-------ALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPK 415
Query: 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYNIEINNKIINNI 458
+ +++S Y+ + W++ + + R AG+SSFG GGTN H+VL EY+ +
Sbjct: 416 LDIENSPFYLNTETRPWMQ-REDGTPRRAGISSFGFGGTNFHMVLEEYSPKHQR------ 468
Query: 459 SINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLNNKESLN----------ISLRDLTLQ 508
+ + + +A + L+ +K + L+ K +LR + +
Sbjct: 469 DDQYRQRAVAQTLLFTAANEKALVSSLKDWKNKLSAKADDQPYAFNALAVENTLRTIAVA 528
Query: 509 LQKGRQAMNCRLALVIFNRDDLLSQL 534
L RL V N D+L++ L
Sbjct: 529 L--------ARLGFVAKNADELITML 546
Score = 31.5 bits (71), Expect = 2.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 782 SNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDNAIGKLICKK 828
S L F + + + ++ + S W DD+YD A K CK+
Sbjct: 21 SRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEA-DKSYCKR 66
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 173 bits (441), Expect = 3e-47
Identities = 109/447 (24%), Positives = 177/447 (39%), Gaps = 57/447 (12%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + I GL P G N + +FW+ L G S I + +
Sbjct: 1 RRVVITGLGAVTPLG-NGVEEFWEALLAGRSGIRPI---TRFDASGFPSR-------IAG 49
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ D FD + + E MD + L + + + DAG D +L GV IG+
Sbjct: 50 EVPD---FDPEDY-LDRKELRRMDRFAQFALAAAEEALADAGLDPEELDPERIGVVIGSG 105
Query: 133 GSD-------YTRLLSD-YIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSS 184
Y LL ++ +MA A +++ GP+ + TAC+S
Sbjct: 106 IGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMA--AGQVAIRLGLRGPNYTVSTACAS 163
Query: 185 SLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDG-----ICKTFDKN 239
A+ +A + I+ G + + GG ++ P + LS + FDK+
Sbjct: 164 GAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKD 223
Query: 240 ADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL-- 297
DG+V GEGA +L+L+ L A IYA I G + + +TAP+P +
Sbjct: 224 RDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYH--ITAPDPDGEGAARAM 281
Query: 298 QKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGS 357
+ A ++ + + YI HGT T L D E + +K F + K + + S
Sbjct: 282 RAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGE---HAKKVP-------VSS 331
Query: 358 VKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVK 417
K+ GHL A+G + +L L++ LP ++N + L D+V
Sbjct: 332 TKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDL------------DYVP 379
Query: 418 PKYENKLRIAGVS-SFGSGGTNAHVVL 443
+ +S SFG GG NA +V
Sbjct: 380 NEAREAPIRYALSNSFGFGGHNASLVF 406
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 165 bits (419), Expect = 2e-44
Identities = 106/456 (23%), Positives = 175/456 (38%), Gaps = 65/456 (14%)
Query: 12 NKDIAIIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGI 68
+ + I GL G N + + W L G S I + S
Sbjct: 2 MRRVVITGLGIVSSLG-NGVEEVWAALLAGKSGIRPITRFDASGLG-------------- 46
Query: 69 NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVF 128
+I+ D + E MD ++ + + + +EDAG D+ GV
Sbjct: 47 --VKIAGEIKDLDDQI---AKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVDMRVGVA 101
Query: 129 IGASGSDYTRLLSDYIKI-------PVNAHHCIG--NSMAVLANRISYFYNFTGPSLLID 179
IG+ + D + ++ ++A A ++ + GP+
Sbjct: 102 IGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLA--AGNVAIVFGLKGPNYTPV 159
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICK 234
TAC++ A+ +A++ I+ G++ + GG + P + LS +
Sbjct: 160 TACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASR 219
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ- 293
FDKN DG+V GEGA L+L+ L AL IYA I G T + +TAP P +
Sbjct: 220 PFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTT--SDAYHITAPAPDGEG 277
Query: 294 -SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEK 352
++ A ++ + + YI HGT T D E +K F ++ K+
Sbjct: 278 AIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVF------GEHAKSLP-- 329
Query: 353 CGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHL 412
+ S K+ GH A+G + +L L++ +P ++N N D +
Sbjct: 330 --VSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDN------PDPEAADL---- 377
Query: 413 QDWV-KPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
D V +R A +SFG GGTNA +V Y
Sbjct: 378 -DVVPNEARTGAVRAALSNSFGFGGTNASLVFKRYQ 412
>gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 119
Score = 145 bits (369), Expect = 5e-41
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 9/126 (7%)
Query: 268 YAIIKGSAITHNGQ-SNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
YA+I+GSA+ +G NGLTAPN Q+ ++ A ++ +D + Y+E HGTGT LGDP
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
IE + LK F + +GSVK+N+GHLEAA+G+ G++K +L L++ +
Sbjct: 61 IEAEALKAVFGP--------GRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVI 112
Query: 387 PASLNF 392
P +LN
Sbjct: 113 PPTLNL 118
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 140 bits (355), Expect = 6e-36
Identities = 99/445 (22%), Positives = 184/445 (41%), Gaps = 56/445 (12%)
Query: 15 IAIIGLACYLPKG--INTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKG-INFG 71
+ I G+ P G + + +FW+ L++G S I + + + + G I G
Sbjct: 3 VVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKSRFDRGV------AGQIPTG 56
Query: 72 AFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGY-DSSKLSGSNTGVFIG 130
DI +DA I +D + L + + + DAG D ++ S GV +G
Sbjct: 57 ----DIPGWDAKRTGI-------VDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVG 105
Query: 131 ASGSDYT------RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNF-TGPSLLIDTACS 183
+ +L + + V+ + + A ++ GP AC+
Sbjct: 106 SGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTV--AGWVNILLLSSHGPIKTPVGACA 163
Query: 184 SSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD-----GICKTFDK 238
++L A+ A+++I++G++ +VGG+ L + G LS + + FD+
Sbjct: 164 TALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRPFDE 222
Query: 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQ 298
DG+V EGA +L+L+ +AL IY + G+A T +G + A ++
Sbjct: 223 TRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIAR-AIR 281
Query: 299 KAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSV 358
A ++ + + L I HGT T D E + + + +
Sbjct: 282 TALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAG----------ALGAPLPVTAQ 331
Query: 359 KTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKP 418
K GH + A+G ++ + L++ +P + N ++ D HL ++ +D
Sbjct: 332 KALFGHSKGAAGALQLIGALQSLEHGLIPPTANL----DDVDPDVEHLSVVGLSRDLNL- 386
Query: 419 KYENKLRIAGVSSFGSGGTNAHVVL 443
K+R A V++FG GG+NA +VL
Sbjct: 387 ----KVRAALVNAFGFGGSNAALVL 407
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 133 bits (337), Expect = 2e-33
Identities = 128/457 (28%), Positives = 199/457 (43%), Gaps = 85/457 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD 76
+ GL P G N + +FW+ L G S I + ++ +K +KD
Sbjct: 5 VTGLGAVTPLG-NGVEEFWENLLAGKSGIGPITR---FDASDLPVK-------IAGEVKD 53
Query: 77 IECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDY 136
FD + I EA MD + L + + +ED+G D + GV IG+
Sbjct: 54 ---FDPEDY-IDKKEARRMDRFIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGL 109
Query: 137 TRLLSDYIK-------------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACS 183
+ +I IP+ I N MA A +IS Y GP+ + TAC+
Sbjct: 110 ETIEEQHIVLLEKGPRRVSPFFIPM----SIIN-MA--AGQISIRYGAKGPNHAVVTACA 162
Query: 184 SSLVAVHEALQSIKNGESSQALVGG----INLILHPSNTIAYY---KAGMLSR-----DG 231
+ A+ +A + I+ G++ + GG I + IA + KA LS +
Sbjct: 163 TGTHAIGDAFRLIQRGDADVMIAGGAEAAITPL-----GIAGFAAMKA--LSTRNDDPEK 215
Query: 232 ICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP- 290
+ FDK+ DG+V GEGA +L+L+ L A IYA I G ++ G + +TAP P
Sbjct: 216 ASRPFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMS--GDAYHITAPAPE 273
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
+ ++ A ++ I+ + YI HGT T LGD E + +K F H+ YK +
Sbjct: 274 GEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHA---YKLAVS 330
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K+ GH L AA I I +L L++ +P ++N N + LD
Sbjct: 331 ---------STKSMTGHLLGAAGAIEAIF-TVLALRDGIVPPTINLDNPDPECDLD---- 376
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
Y+ + + + E K+ A +SFG GG NA +V
Sbjct: 377 YVPN------EAR-EAKIDYALSNSFGFGGHNASLVF 406
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 124 bits (314), Expect = 2e-30
Identities = 109/446 (24%), Positives = 178/446 (39%), Gaps = 52/446 (11%)
Query: 25 PKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGIN------FGAFLKDIE 78
P G+ W+ L G S I +L E P I + + + A + E
Sbjct: 4 PLGVG-AESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSE 62
Query: 79 CFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFIGASGSDYT 137
FD F + E + + + + DA D S+ GV IG SG
Sbjct: 63 -FDPSDFAPTKRE----SRATHFAMAAAREALADAKLDILSEKDQERIGVNIG-SGIGSL 116
Query: 138 RLLSDYIKIPVNAHHCIGNSM---AVLANR----ISYFYNFTGPSLLIDTACSSSLVAVH 190
L+D +K H + +L N ++ + GPS TAC++ +
Sbjct: 117 ADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIG 176
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKTFDKNADGYV 244
EA + IK GE+ + GG + P + + + L + FDK+ G+V
Sbjct: 177 EAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFV 236
Query: 245 RGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYL--LQKAWN 302
GEGA +L+L+ L AL IYA I+G + ++ +TAP+P + ++ A
Sbjct: 237 MGEGAGILVLEELEHALRRGAKIYAEIRGYGSS--SDAHHITAPHPDGRGARRCMENALK 294
Query: 303 ES-NIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTN 361
+ NI++ + Y+ H T T +GD IE++ +K F K + S K
Sbjct: 295 DGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAP---------KLYVSSTKGG 345
Query: 362 LGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKY 420
LGH L AA + I+ IL L + +P ++N N + L +
Sbjct: 346 LGHLLGAAGAVESIVT-ILSLYEQIIPPTINLENPDAECDL----NLVQGK-----TAHP 395
Query: 421 ENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ +SFG GG N ++ ++Y
Sbjct: 396 LQSIDAVLSTSFGFGGVNTALLFTKY 421
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 112 bits (283), Expect = 2e-26
Identities = 120/458 (26%), Positives = 187/458 (40%), Gaps = 104/458 (22%)
Query: 29 NTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAFLKDIECFDAPFF 85
N + WK L G S I + S D+ K +KD F+ +
Sbjct: 17 NDVESTWKNLLAGKSGIGPITHFDTS--------DLAVK-----IAGEVKD---FNPDDY 60
Query: 86 KISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG--------SDYT 137
+S EA MD + + + + +EDAG + ++ + GV IG SG +
Sbjct: 61 -MSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEENADRIGVIIG-SGIGGLETIEEQHI 118
Query: 138 RLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHE 191
LL + +P+ I N MA A +S Y GP+ I TAC++ A+ +
Sbjct: 119 TLLEKGPRRVSPFFVPM----AIIN-MA--AGHVSIRYGAKGPNHSIVTACATGAHAIGD 171
Query: 192 ALQSIKNGESSQALVGGINLILHPSNTIAYYKAGM-----LSRD-----GICKTFDKNAD 241
A + I G++ + GG + AG LS + FDK+ D
Sbjct: 172 AARLIAYGDADVMVAGGAE---AAITPLGI--AGFAAARALSTRNDDPERASRPFDKDRD 226
Query: 242 GYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP------- 290
G+V GEGA +L+L+ L A IYA + G +T H +TAP P
Sbjct: 227 GFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYH------MTAPAPDGEGAAR 280
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
++ A ++ I+ + YI HGT T GD E Q +K F
Sbjct: 281 AMKL------ALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVF----------GEH 324
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
K + S K+ GH L AA + I +L ++++ +P ++N N ++ LD
Sbjct: 325 AYKVAVSSTKSMTGHLLGAAGAVEAIFS-VLAIRDQVIPPTINLDNPDEECDLD-----Y 378
Query: 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + + + E K+ A +SFG GGTNA +V Y
Sbjct: 379 VPN-----EAR-ERKIDYALSNSFGFGGTNASLVFKRY 410
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 106 bits (266), Expect = 1e-25
Identities = 68/349 (19%), Positives = 124/349 (35%), Gaps = 104/349 (29%)
Query: 98 QQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNS 157
+ E + + I DAG + GV +G +G
Sbjct: 7 ASELGFEAAEQAIADAGLSKGPI----VGVIVGTTGGSG--------------------E 42
Query: 158 MAVLANRISYFYNFT-GPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPS 216
+ A +++Y + GP+ ++ AC++ L A+ A+Q ++NG++ L GG
Sbjct: 43 FSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEEF---- 98
Query: 217 NTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276
V G+GA +++ AL + A I +A
Sbjct: 99 ---------------------------VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAA 131
Query: 277 THNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF 336
T +G S + A + + +KA + + + Y+E HGTGT +GD +E+ +
Sbjct: 132 TFDGAS-MVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPD 190
Query: 337 --HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYN 394
S + + GH A+G+ + +++L L+++ +P +
Sbjct: 191 GVRSP--------------AVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT----- 231
Query: 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ R + FG GGTNA VVL
Sbjct: 232 --------------------------PREPRTVLLLGFGLGGTNAAVVL 254
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 105 bits (265), Expect = 3e-24
Identities = 106/465 (22%), Positives = 180/465 (38%), Gaps = 77/465 (16%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K I + G+ P G + FW+ L G S I L + G
Sbjct: 4 KRIVVTGMGAVSPLG-CGVETFWQRLLAGQSGIRTLTD---------FPVGDL-ATKIGG 52
Query: 73 FLKDIE-----CFDAPFFKISPIEAESMDPQQRILLEL--SWKTIEDAGYDSSKLSGSN- 124
+ D+ FD + + P + MD IL + + + + AG+D L
Sbjct: 53 QVPDLAEDAEAGFDPDRY-LDPKDQRKMDR--FILFAMAAAKEALAQAGWDPDTLEDRER 109
Query: 125 TGVFIGASGSDYTRLLSDYIKI----------PVNAHHCIGNSMAVLANRISYFYNFTGP 174
T IG SG +++ ++ P + N MA A +S Y F GP
Sbjct: 110 TATIIG-SGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTN-MA--AGHVSIRYGFKGP 165
Query: 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----- 229
TAC++ + A+ +A + I++GE+ A+ GG + + + A LS
Sbjct: 166 LGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDA 225
Query: 230 -DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----H--NGQS 282
+ + FD++ DG+V GEGA +L+++ L AL A + G + H G
Sbjct: 226 PEQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPE 285
Query: 283 NGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITY 342
+G A + A ++ I + ++ H T T +GD E+ +K F
Sbjct: 286 DGEGARRAMLI------ALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGH---- 335
Query: 343 KKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKL 401
+ + S K+ GH L AA G+ I IL L+++ P +LN N +
Sbjct: 336 VSGLA-------VSSTKSATGHLLGAAGGVEAIFT-ILALRDQIAPPTLNLENPDPAA-- 385
Query: 402 DDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + + + + A + FG GG NA ++ +
Sbjct: 386 -EGLDVVANKARPMD-------MDYALSNGFGFGGVNASILFRRW 422
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 104 bits (261), Expect = 6e-24
Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 59/368 (16%)
Query: 98 QQRILLELSWKTIEDAGYDSSKLSG--SNTGVFIGAS----GSDYTRLLSDYIKIPVNAH 151
Q LE KT+ A + L+ ++ GV IG+S G + +L + +
Sbjct: 51 NQPSSLEDLTKTVVTAALKDAGLTPPLTDCGVVIGSSRGCQGQ-WEKLARQMYQGDDSPD 109
Query: 152 ---------HCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESS 202
+ + A+ A R GP L AC++ L A+ + ++ I+ G+
Sbjct: 110 EELDLENWLDTLPHQAAIAAARQ---IGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQ 166
Query: 203 QALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLMLKPLSVALN 262
+ + G + + P + + G L++ G FD+ +G V GEG +L+L+ +A
Sbjct: 167 RVIAGAVEAPITPLTLAGFQQMGALAKTG-AYPFDRQREGLVLGEGGAILVLESAELAQK 225
Query: 263 DHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTG 320
IY I G +T + ++AP P +S + Q+ S + + YI HGT
Sbjct: 226 RGAKIYGQILGFGLTCDAYH--MSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTA 283
Query: 321 TKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILC 380
T+L D E ++ F + + S K GH ASG G+ +L
Sbjct: 284 TRLNDQREANLIQALFPH-------------RVAVSSTKGATGHTLGASGALGVAFSLLA 330
Query: 381 LKNKKLPASLNF----YNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGG 436
L++++LP + ++LN +V+ ++ L+ SFG GG
Sbjct: 331 LRHQQLPPCVGLQEPEFDLN------------------FVRQAQQSPLQNVLCLSFGFGG 372
Query: 437 TNAHVVLS 444
NA + L
Sbjct: 373 QNAAIALG 380
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 103 bits (259), Expect = 2e-23
Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 36/287 (12%)
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
S + G + A +S +AV +A + +++G + G + L A
Sbjct: 150 CSEQFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSL 209
Query: 225 G-MLSRDGI------CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT 277
G M S C+ FD++ DG++ GE ++L+ A YA + G ++
Sbjct: 210 GAMGSDRFADEPEAACRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMR 269
Query: 278 HNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFH 337
+ N P+ + +++ A + + + Y+ HGTG+ LGD E+ L +
Sbjct: 270 LDA--NRGPDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAALFASGL 327
Query: 338 SIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNK 397
+ + + K+ GH +A+GI ++ +L ++ L S N
Sbjct: 328 A-------------HAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRN------ 368
Query: 398 NIKLDDSHLYIIDHLQDWVKPKYEN-KLRIAGVSSFGSGGTNAHVVL 443
LD+ ID WV E+ ++R A SFG GG N +VL
Sbjct: 369 ---LDEP----IDERFRWVGSTAESARIRYALSLSFGFGGINTALVL 408
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 102 bits (254), Expect = 6e-23
Identities = 104/450 (23%), Positives = 193/450 (42%), Gaps = 57/450 (12%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + + G+ P G NT+ WK L G S I + D N F
Sbjct: 4 RRVVVTGMGMLSPVG-NTVESSWKALLAGQSGIVNIEH--------FDTTNF--STRFAG 52
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+KD C + +S +A MD + + + ++D+G + ++ + GV IG S
Sbjct: 53 LVKDFNCEEY----MSKKDARKMDLFIQYGIAAGIQALDDSGLEVTEENAHRIGVAIG-S 107
Query: 133 G--------SDYTRLLSDYIKIP--VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTAC 182
G + + L+ K P V+ + ++A +S GP++ I TAC
Sbjct: 108 GIGGLGLIEAGHQALVE---KGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTAC 164
Query: 183 SSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFD 237
++ L + A + I G++ + GG P + A LS + +D
Sbjct: 165 TTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWD 224
Query: 238 KNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQ--SY 295
K+ DG+V G+GA M++L+ A IYA + G ++ G + +T+P+ +
Sbjct: 225 KDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMS--GDAYHMTSPSEDGSGGAL 282
Query: 296 LLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGL 355
++ A ++ + +GY+ HGT T GD EI+G+K A + ++ +
Sbjct: 283 AMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGS---------KQVLV 333
Query: 356 GSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDW 415
S K+ GHL A+G + ++ L ++ +P ++N + + + +D ++ H
Sbjct: 334 SSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDID-----LVPHTARK 388
Query: 416 VKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445
V+ + A +SFG GGTN ++ +
Sbjct: 389 VE-----SMEYAICNSFGFGGTNGSLIFKK 413
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 99.5 bits (248), Expect = 6e-22
Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 58/346 (16%)
Query: 125 TGVFIGASGSDYT--------------RLLSDYI--KIPVNAHHCIGNSMAVLANRISYF 168
TGV IG T R LS + +I +N MA A +S
Sbjct: 121 TGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILIN--------MA--AGHVSIR 170
Query: 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
Y F GP+ TAC++ ++ +A + I+ G++ + GG + + + ++ LS
Sbjct: 171 YGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALS 230
Query: 229 -RDGICKT-----FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQS 282
+ C T FD + DG+V GEGA +L+L+ L A IYA ++G ++ G +
Sbjct: 231 TKFNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMS--GDA 288
Query: 283 NGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HS 338
+ +T P+ + +L +A +S + + Y+ H T T LGD +E + +K F H+
Sbjct: 289 HHITQPHEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHA 348
Query: 339 IITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398
S K GHL A+G + +L + + P +L NL +
Sbjct: 349 TS----------GGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTL---NLERP 395
Query: 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
+ D D K +R A +SFG GGTNA ++ +
Sbjct: 396 DPIFD------DGFVPLTASK-AMLIRAALSNSFGFGGTNASLLFT 434
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 94.8 bits (236), Expect = 1e-20
Identities = 110/409 (26%), Positives = 172/409 (42%), Gaps = 71/409 (17%)
Query: 74 LKDIECFDAPFFKISPIEAE--------SMDPQQ--------RILLELSWKTIEDAGYDS 117
+K I FDA F + I E MDP++ ++ L+ + + ++DAG+
Sbjct: 33 IKKITLFDASDFPVQ-IAGEITDFDPTEVMDPKEVKKADRFIQLGLKAAREAMKDAGFLP 91
Query: 118 SKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHC------------IGNSMA-VLANR 164
+L GV ASG + I N+ C I +++ +L
Sbjct: 92 EELDAERFGV-SSASG------IGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGF 144
Query: 165 ISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA 224
IS + GP+L TAC++ A+ EA+++I G + + LV G + P +
Sbjct: 145 ISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAM 204
Query: 225 GMLS-RDGICKT----FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHN 279
LS R+ K FDK+ DG+V GEGA L+L+ A IYA I G +
Sbjct: 205 KALSTRNDDPKKASRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIG--FGES 262
Query: 280 GQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSI 339
G +N +T+P P ++ A + + YI HGT T D E LK F S
Sbjct: 263 GDANHITSPAPEGPLRAMKAALEMAGNP--KIDYINAHGTSTPYNDKNETAALKELFGS- 319
Query: 340 ITYKKNIKNFYEKCGL-GSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNK 397
EK S K +GH L AA I ++ I+ +++ LP ++N +
Sbjct: 320 ----------KEKVPPVSSTKGQIGHCLGAAGAIEAVIS-IMAMRDGILPPTINQETPDP 368
Query: 398 NIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
LD YI + + + +L + +SFG GGTN V+ +
Sbjct: 369 ECDLD----YIPNVAR-------KAELNVVMSNSFGFGGTNGVVIFKKV 406
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 90.4 bits (224), Expect = 9e-19
Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 56/385 (14%)
Query: 87 ISPIEAESMDPQQRILLELSWKTIEDAGYDS---SKLSGSNTGVFIGASGSDYTRLLSDY 143
++P ++ MD LL K + D G +L + GV IG S ++ +D
Sbjct: 188 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIG-SAMGGMKVFNDA 246
Query: 144 IK-------------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVH 190
I+ +P A +G++M LA + + GP+ I TAC++S +
Sbjct: 247 IEALRISYRKMNPFCVPF-ATTNMGSAM--LAMDLGWM----GPNYSISTACATSNFCIL 299
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDG-----ICKTFDKNADGYVR 245
A I GE+ L GG + + P + LS+ + +D N DG+V
Sbjct: 300 NAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVM 359
Query: 246 GEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYLL--QKAWNE 303
GEGA +L+L+ L A NIYA G + T + +T P+P +L +KA +
Sbjct: 360 GEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYH--MTEPHPEGAGVILCIEKALAQ 417
Query: 304 SNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLG 363
S + + YI H T TK GD E Q L F + N S K+ +G
Sbjct: 418 SGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNPELRVN-----------STKSMIG 466
Query: 364 HLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYEN- 422
HL A+G + + ++ + ++N N + ++ V PK E
Sbjct: 467 HLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTK-----VL------VGPKKERL 515
Query: 423 KLRIAGVSSFGSGGTNAHVVLSEYN 447
+++A +SFG GG N+ ++ + Y
Sbjct: 516 DIKVALSNSFGFGGHNSSILFAPYK 540
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 89.4 bits (222), Expect = 9e-19
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 45/281 (16%)
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILH--PSNTIAYYKAGMLSRD----GIC 233
+AC+S A+ +A + I GE+ A+ GG+ + P A + M + + G C
Sbjct: 169 SACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 228
Query: 234 KTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP--I 291
+ FDK+ DG+V GEG +++++ A NI A I G++IT +G + AP+P
Sbjct: 229 RPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFH--MVAPDPNGE 286
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNF 349
+ + + +A + + + ++ H TGT +GD E + + NA H Y
Sbjct: 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGHRPAVY------- 339
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
+ K+ LGH + A + IL +L L++ +P +LN NL+ I LD
Sbjct: 340 -------APKSALGHSVGAVGAVESILT-VLALRDGVIPPTLNLENLDPEIDLD------ 385
Query: 409 IDHLQDWV---KPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
V +P+ N R A +SFG GG N + Y
Sbjct: 386 -------VVAGEPRPGN-YRYAINNSFGFGGHNVALAFGRY 418
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 88.1 bits (219), Expect = 2e-18
Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 44/299 (14%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A+R++ + G + + TAC+S A+ +++I+ GE+ +AL + + I +
Sbjct: 155 ADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRF 214
Query: 222 YKAGMLSR-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAI 276
LS + K F K+ DG+V EGA L+L+ L A+ I I+ G
Sbjct: 215 SLLSALSTQNDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGE 274
Query: 277 T----HNGQSNGLTAPN--PIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQ 330
H +S+ P+ P + ++ A ++ + + YI HGT T D +E
Sbjct: 275 KADSFHRTRSS----PDGSPAIGA--IRAALADAGLTPEQIDYINAHGTSTPENDKMEYL 328
Query: 331 GLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPAS 389
GL F + +I + S K+ +GH L AA + + +L ++ +LP +
Sbjct: 329 GLSAVFGERL---ASIP-------VSSNKSMIGHTLTAAGAVEAVFS-LLTIQTGRLPPT 377
Query: 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGV--SSFGSGGTNAHVVLSEY 446
+N+ N + I LD V P R+ V +SFG GG NA +VL+
Sbjct: 378 INYDNPDPAIPLD-------------VVPNVARDARVTAVLSNSFGFGGQNASLVLTAE 423
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 82.9 bits (204), Expect = 5e-17
Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 27/291 (9%)
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A +S ++F GP TAC++ + A+ +A++ I+N E+ AL GG ++ + +
Sbjct: 71 AGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGF 130
Query: 222 YKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
A LS + + FD DG+V GEGA +L+++ L AL A I G
Sbjct: 131 AAARALSTHFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYG 190
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA 335
+ + A + ++ A ++ I + ++ H T T +GD EI +K+
Sbjct: 191 TSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHL 250
Query: 336 FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNL 395
F + S K+ GHL A+G + +L L+++ +PA+LN N
Sbjct: 251 FGE-----------SNALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENP 299
Query: 396 NKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ K L II + + A + FG G NA ++L +
Sbjct: 300 DPAAK----GLNII------AGNAQPHDMTYALSNGFGFAGVNASILLKRW 340
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 74.3 bits (183), Expect = 6e-14
Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 32/275 (11%)
Query: 110 IEDAG-YDSSKLSGSNTGVFIGAS-GS-----DYTRLLSDYIKIPVNAHHCIGNSMA-VL 161
+EDAG L+ G+ G+S GS + +L + + A + M
Sbjct: 85 LEDAGLLGDPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYV-RMMPHTT 143
Query: 162 ANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAY 221
A + F+ G + +AC+S + A ++IK G + L GG L P+ +
Sbjct: 144 AVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVF 202
Query: 222 ---YKAGMLSRDGICKT---FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSA 275
+ A D T FD N DG V GEGA L+L+ L A IYA I G
Sbjct: 203 DTLF-ATSTRNDAPELTPRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFG 261
Query: 276 ITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNA 335
+G +T P ++ A ++ + +GY+ HGT T GD E Q A
Sbjct: 262 TNSDGAH--VTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQ----A 315
Query: 336 FHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASG 370
++ F + + S+K+ GH A G
Sbjct: 316 TAAV---------FGARMPISSLKSYFGHTLGACG 341
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 73.7 bits (182), Expect = 1e-13
Identities = 82/341 (24%), Positives = 132/341 (38%), Gaps = 71/341 (20%)
Query: 126 GVFIGASGSD-------YTRLLSDYIKIPVN---AHHCIGNSMAVLANRISYFYNFTGPS 175
GV +G S S Y R + +P + A +G+ LA+ + + +GP+
Sbjct: 98 GVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGS----LADFLRAYLGLSGPA 153
Query: 176 LLIDTACSSSLVAVHEALQSIKNGESSQALVGGIN----LILHPSNTIAYYKAGMLSRDG 231
I TACSSS A + ++ G A+VGG++ L L+ N++ LS
Sbjct: 154 YTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDSLCRLTLNGFNSL-----ESLS-PQ 207
Query: 232 ICKTFDKNADGYVRGEGA-VMLMLKPLS--VALNDHDNIYAIIKGSAITHNGQSNGLTAP 288
C+ F N DG GE A L+ + VAL + S+ H+ ++AP
Sbjct: 208 PCRPFSANRDGINIGEAAAFFLLEREDDAAVAL-------LGVGESSDAHH-----MSAP 255
Query: 289 NP-----IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYK 343
+P I +Q+A ++ + +GYI HGT T L D +E + A ++
Sbjct: 256 HPEGLGAILA---MQQALADAGLAPADIGYINLHGTATPLNDAMESR----AVAAV---- 304
Query: 344 KNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD 403
F + S K GH A+G L L++ P N + D
Sbjct: 305 -----FGDGVPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTG------QPDP 353
Query: 404 SHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
+ V+ +R +SF GG N ++
Sbjct: 354 A-----LPPLYLVENAQALAIRYVLSNSFAFGGNNCSLIFG 389
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 73.6 bits (181), Expect = 1e-13
Identities = 83/358 (23%), Positives = 144/358 (40%), Gaps = 55/358 (15%)
Query: 110 IEDAGYDSSKLSGSNTGVFIGASG---------SDYTRLLSDYIKI-PVNAHHCIGNSM- 158
I DAG ++S TG+ G+ G +D R ++ P + +++
Sbjct: 83 IADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVS 142
Query: 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218
A LA + G + I +AC++S + A++ I+ G+ GG L +
Sbjct: 143 ACLAT----PFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMS 197
Query: 219 IAYYKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIK 272
+ G LS + + +D N DG+V G +++++ L AL IYA I
Sbjct: 198 CLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIV 257
Query: 273 GSAITHNGQSNGLTAPNPIQQSYLLQKAWN--ESNIDVRSLGYIECHGTGTKLGDPIEIQ 330
G T +G + AP+ +Q A ++ ID YI HGT T +GD E+
Sbjct: 258 GYGATSDGYD--MVAPSGEGAVRCMQMALATVDTPID-----YINTHGTSTPVGDVKELG 310
Query: 331 GLKNAFHSIITYKKNIKNFYEKC-GLGSVKTNLGHLEAASGITGILKIILCLKNKKLPAS 389
++ F +K + + K+ GH A+G+ + +L +++ + S
Sbjct: 311 AIREVFG-------------DKSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPS 357
Query: 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
N L+ + I+ + +L +SFG GGTNA +V Y
Sbjct: 358 ANIEELDPQAA----GMPIV------TETTDNAELTTVMSNSFGFGGTNATLVFRRYK 405
>gnl|CDD|214834 smart00823, PKS_PP, Phosphopantetheine attachment site.
Phosphopantetheine (or pantetheine 4' phosphate) is the
prosthetic group of acyl carrier proteins (ACP) in some
multienzyme complexes where it serves as a 'swinging
arm' for the attachment of activated fatty acid and
amino-acid groups.
Length = 86
Score = 58.8 bits (143), Expect = 7e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 644 SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQI 700
+E D D F D+GLDS++AV ++ + L + +T ++D+PT + + +++
Sbjct: 30 AEAIDPDRPFRDLGLDSLMAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAEL 86
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for
polyketide chain initiation of aromatic
antibiotic-producing polyketide synthases (PKSs) of
filamentous bacteria. CLFs have been shown to have
decarboxylase activity towards malonyl-acyl carrier
protein (ACP). CLFs are similar to other elongation
ketosynthase domains, but their active site cysteine is
replaced by a conserved glutamine.
Length = 399
Score = 60.8 bits (148), Expect = 1e-09
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 44/281 (15%)
Query: 16 AIIGLACYLPKGINTLSKFWKILKKGSSVIEELNE---SRWIWPLEIDIKNKHKGINFGA 72
+ G+ P G+ ++WK + G S + + S + P + G
Sbjct: 4 VVTGIGVVAPNGLGV-EEYWKAVLDGRSGLGPITRFDPSGY--PARL------AG----- 49
Query: 73 FLKDIECFDAPFFKISPIEAE---SMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
++ FDA + D R+ L + + DAG D + L + GV
Sbjct: 50 ---EVPDFDAA----EHLPGRLLPQTDRMTRLALAAADWALADAGVDPAALPPYDMGVVT 102
Query: 130 GAS--GSDYT-----RLLSDYIKIP--VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
++ G ++ +L S K P V+A+ AV +IS + GPS ++
Sbjct: 103 ASAAGGFEFGQRELQKLWS---KGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVA 159
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKT----F 236
+ L A+ +A + ++ G + + GG++ L P +A +G LS F
Sbjct: 160 EQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPF 218
Query: 237 DKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT 277
D A GYV GEG +L+L+ + A +Y I G A T
Sbjct: 219 DAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAAT 259
>gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site. A
4'-phosphopantetheine prosthetic group is attached
through a serine. This prosthetic group acts as a a
'swinging arm' for the attachment of activated fatty
acid and amino-acid groups. This domain forms a four
helix bundle. This family includes members not included
in Prosite. The inclusion of these members is supported
by sequence analysis and functional evidence. The
related domain of Vibrio anguillarum angR has the
attachment serine replaced by an alanine.
Length = 66
Score = 49.1 bits (118), Expect = 1e-07
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
++ D D D+GLDS++AV + ++ + + I + ++++PTL + ++
Sbjct: 15 DEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLGELAAYL 66
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 42.7 bits (101), Expect = 6e-04
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 23/79 (29%)
Query: 130 GASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAV 189
G G + R + +P + P++ ++ AC+S L AV
Sbjct: 63 GEQGQNIARQAALAAGLPGSV-----------------------PAVTVNRACASGLAAV 99
Query: 190 HEALQSIKNGESSQALVGG 208
A Q+I +GE+ L GG
Sbjct: 100 RLAAQAIASGEADVVLAGG 118
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 40.2 bits (95), Expect = 0.003
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P+ ++ C S L AV A QSI GE+ + GG+
Sbjct: 76 PATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGV 111
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 40.3 bits (95), Expect = 0.004
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P+ ++ C+S L AV A Q I+ GE+ + GG+
Sbjct: 75 PAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGV 110
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 39.2 bits (92), Expect = 0.006
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 158 MAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
A L I + P++ I+ C S L AV A Q+I+ G++ + GG
Sbjct: 66 QAALKAGIPD----SVPAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGG 112
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 36.5 bits (85), Expect = 0.048
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 21/112 (18%)
Query: 100 RILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMA 159
R LEL+ + A + +G + + + + NA S
Sbjct: 14 RSPLELAAEAARAA---------------LDDAGLEPADIDAVVV---GNAAGGRFQSF- 54
Query: 160 VLANRISYFYNFTG-PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGIN 210
I+ + G P+ ++ A +S AV A +I +G + LV G
Sbjct: 55 -PGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAE 105
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 36.2 bits (84), Expect = 0.050
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 689 LNKFFKFIMSQISKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKK 748
L K I+ +I K + K DF KSIN +ID I K SKI++D I +
Sbjct: 120 LEYILKKILDKIEKFDEIKG--AKKKDFFKSINIYEIDNFIDKTLSKILDDNIVFQ-DNL 176
Query: 749 LKSKNLSINNDDFDKSINNDDFEIS 773
K+ + ++N +K N + +IS
Sbjct: 177 EKNIDDKLSNIFNEKLSNLKNEKIS 201
>gnl|CDD|225967 COG3433, COG3433, Aryl carrier domain [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 74
Score = 32.4 bits (74), Expect = 0.10
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWI---RKINSQLDLSINSTKIYDYPTLNKFFKFI 696
L E+ DD ID GLDSI + + RK + +D + ++ PTL +++ +
Sbjct: 11 LGESVEELDDQENLIDYGLDSIRMMALLERWRKRGADIDFA----QLAANPTLAAWWQLL 66
Query: 697 MS 698
+
Sbjct: 67 ST 68
>gnl|CDD|223314 COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 80
Score = 32.3 bits (74), Expect = 0.12
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 633 SDDTQIKLQIKS---EQFDDDAIFIDM--------GLDSIIAVTWIRKINSQLDLSINST 681
S I+ ++K EQ D I GLDS+ V + + + + I
Sbjct: 1 SQMEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDE 60
Query: 682 KIYDYPTLNKFFKFI 696
++ + T+ +I
Sbjct: 61 ELENIKTVGDLVDYI 75
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 35.5 bits (82), Expect = 0.14
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 641 QIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKF 692
Q+K EQ D F +G +SI A + ++ +L + +N ++++ PTL F
Sbjct: 598 QLKVEQVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAF 649
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 34.5 bits (80), Expect = 0.22
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P+ ++ AC+S A+ +A ++ +GE+ L G+
Sbjct: 77 PATRVEAACASGGAALRQAYLAVASGEADVVLAAGV 112
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 34.5 bits (79), Expect = 0.23
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 172 TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILH 214
T ++ ++ C SS+ A+H+A ++I G++ LVGG+ + H
Sbjct: 79 TSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGH 121
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 34.8 bits (80), Expect = 0.24
Identities = 37/168 (22%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 617 NLNKKISNSDDTQISNSDDTQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLD- 675
N IS S + I + IK S DS++ + +K++ +LD
Sbjct: 2 NYENNISISSENTIDLKNPLFIKNLKHSSY---KIRLESDIKDSLLNLDINKKLHEKLDK 58
Query: 676 LSINSTKIYDYPTLNKFFKFIMSQISKKLKSKNLSINNDD--FDKSINNDDID------- 726
+ K D K KK K L I++D F S NN
Sbjct: 59 KNKKFNKTDDLKDSKK-----TKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAIS 113
Query: 727 -KSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDFEIS 773
K ++ + I+ + S K K + + D+ K NN IS
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSIS 161
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 33.9 bits (78), Expect = 0.30
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 155 GNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
G + R+ Y P++ +D C+SSL V I G + + GG+
Sbjct: 72 GGRHPIFLARLPY----NIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGV 122
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 34.4 bits (80), Expect = 0.34
Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 34/192 (17%)
Query: 616 NNLNKKISNSDDTQISNSDDTQI-KLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQL 674
L +I+ DD Q + +I K+ + + + +I+ + + +L
Sbjct: 8 KKLLDQINIPDDLQSEALESAEIEKVVVDKKS---KKWEFHLKFPNILPIEDFKLFKEKL 64
Query: 675 DLS-------------INSTKIYDYPTLNKFFKFIMSQISKK-------LKSKNLSINND 714
S + L ++ I+ + K LK + + + +
Sbjct: 65 KQSFSHIADIKVTFSIEVENITFTEELLLDYWNEIIEKAKKNSPLFKSLLKKQKVEVEGN 124
Query: 715 DFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDFEISK 774
+NN+ +KK + + K+ + I DF+ + ++ E K
Sbjct: 125 KLIIKVNNEIERDHLKKKHLPKLI--------KQYEKFGFGILKIDFEIDDSKEELE--K 174
Query: 775 YIREIPKSNNLK 786
+ + + +
Sbjct: 175 FEAQKEEEDEKL 186
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 33.2 bits (76), Expect = 0.35
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 185 SLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYY------KAGMLSRDGICKTFDK 238
++V VH +S+ GE +++ G+ L++ TIA K+ +L I D
Sbjct: 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLL---AILAGLD- 60
Query: 239 NADGYVRGEGAVMLMLKPLS 258
DG G V L+ +PL
Sbjct: 61 --DG---SSGEVSLVGQPLH 75
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 33.6 bits (78), Expect = 0.39
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P+L I+ C S L AV A Q+I+ G++ + GG
Sbjct: 80 PALTINKVCGSGLKAVALAAQAIRAGDADIVVAGG 114
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 33.7 bits (77), Expect = 0.43
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI-NLILHP 215
P++ ++ C S L A+H A Q+I+ G++ + GG N+ L P
Sbjct: 80 PAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAP 122
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 33.4 bits (77), Expect = 0.44
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 182 CSSSLVAVHEALQSIKNGESSQALVGGI----------NLILHPSNTIAYYKA-GML 227
C SS+ A+H+A ++I G+ L+GG+ + HP + KA GM+
Sbjct: 91 CGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGMM 147
>gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 398
Score = 33.4 bits (77), Expect = 0.53
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 161 LANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIA 220
LA IS + TG S S+ + A+ A I +G+S ALVGG P +
Sbjct: 154 LAGNISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLL 213
Query: 221 YYKAGMLSRDGICKTFDK---NADGYVRGEGAVMLML 254
Y G+L + G + + + G++ G G L+L
Sbjct: 214 YELGGLLLKGGWAPVWSRGGEDGGGFILGSGGAFLVL 250
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 33.8 bits (77), Expect = 0.56
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
LQ++ DD+ F ++G S++A+ +I +L L + +++ PTL F
Sbjct: 5085 LQLERVGLDDN--FFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFV------ 5136
Query: 700 ISKKLKSKNLSINNDDFDK 718
+L + S +++ FD
Sbjct: 5137 ---ELAAAAGSGDDEKFDD 5152
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 32.9 bits (75), Expect = 0.80
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P++ ++ AC+S +AV A +++ G S ALV G+
Sbjct: 112 PAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGV 147
>gnl|CDD|177047 CHL00124, acpP, acyl carrier protein; Validated.
Length = 82
Score = 29.6 bits (67), Expect = 1.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 639 KLQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIM 697
+L I+ + DA F D+G DS+ V + I + D+ I TL + FI
Sbjct: 17 QLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFIS 76
Query: 698 SQISKK 703
+I+KK
Sbjct: 77 QKINKK 82
>gnl|CDD|224006 COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI
component in bacteria) [Carbohydrate transport and
metabolism].
Length = 574
Score = 32.2 bits (74), Expect = 1.1
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 185 SLVAVHEALQSIKNGESSQALVGGIN--LILHPS-NTIAYYKAGMLSRD 230
++V + A ++K+G+ ++ GIN +I++P + Y+A +
Sbjct: 202 AVVGLGAATLAVKDGD--TLILDGINGEVIVNPDEAVLQEYRAKQAAYA 248
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 32.1 bits (73), Expect = 1.4
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 716 FDKSINNDDID---KSIKKNNSKIINDTISYDNS-----KKLKSKNLSINNDDFDKSINN 767
DK N+ +I+ KSIK N I I + K +++ + IN+ +F+ SI+
Sbjct: 758 TDKLTNDKNINRQIKSIKIKNLSYIPIDIKVGGNTIDTIKGGETEVVQINSSEFNFSISC 817
Query: 768 DDFEISKYIREIPKSNNLKNFANN 791
D S + K +NLK
Sbjct: 818 LDISFSTTLISKAKLDNLKTLVPE 841
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 31.5 bits (72), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P+ ++ AC++ AV+ AL +I+ G + LV G
Sbjct: 77 PATRVENACATGSAAVYAALDAIEAGRARIVLVVG 111
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 31.8 bits (73), Expect = 1.8
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 42/146 (28%)
Query: 338 SIITYKKNIKNFYEKCGLGSVKTNL---GHL----EAASGITGILKIILCLKNKKLPASL 390
++IT +K F EK L + + + I+ + K+ L + LPA L
Sbjct: 715 TVITSRK----FLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARL 770
Query: 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGV--SSFGSGGTNAHVVLSEYNI 448
K DD A + SS GS G V+LS +NI
Sbjct: 771 LKRLYGPTFKPDD----------------------TATIIFSS-GSEGEPKGVMLSHHNI 807
Query: 449 EINNKIINNISINFEN-----STLPL 469
N + I+++ N N S+LP
Sbjct: 808 LSNIEQISDV-FNLRNDDVILSSLPF 832
>gnl|CDD|205216 pfam13035, DUF3896, Protein of unknown function (DUF3896). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 60 amino acids in length.
Length = 61
Score = 28.3 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 604 YPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQIKSEQF 647
YP +K + L K L KK+SN ++S + QIKL+I + ++
Sbjct: 7 YPATKKHLELKKQQLCKKLSN---VKLSEKEREQIKLEIDNYEY 47
>gnl|CDD|216455 pfam01364, Peptidase_C25, Peptidase family C25.
Length = 340
Score = 30.8 bits (70), Expect = 2.7
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 461 NFENSTLPLIFV--LSAKTKSQLLIYVKKYIEWLNNKESLNISLRDLTL 507
N N LP + + + A+T + V K I + N + ++ L
Sbjct: 102 NELNDYLPDLAIGRIPARTAEEAKNVVDKIIAYERNPSTSGAWRNNVLL 150
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 30.8 bits (70), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P + +D C SS A+H A Q++ +G + GG+
Sbjct: 81 PGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGV 116
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 30.5 bits (69), Expect = 3.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
P I+ C S + AV A ++IK+GE++ + GG+
Sbjct: 82 PGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGV 117
>gnl|CDD|112562 pfam03753, HHV6-IE, Human herpesvirus 6 immediate early protein.
The proteins in this family are poorly characterized,
but an investigation has indicated that the immediate
early protein is required the down-regulation of MHC
class I expression in dendritic cells. Human herpesvirus
6 immediate early protein is also referred to as U90.
Length = 993
Score = 30.8 bits (69), Expect = 3.7
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 701 SKKLKSKNLS-------INNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKN 753
SKK+KS +L I+++ D+ + I KS K K + S S S++
Sbjct: 676 SKKIKSDSLPTDTNVIVISSESEDEEDGFNIIKKSQLKKKIKSELKSESSSESDDCTSED 735
Query: 754 LSINNDDFDKSINNDDFEISKY--------IREIPKSNNLKN 787
++ D+DK INN + E + IR + ++ ++
Sbjct: 736 NELHLSDYDKVINNGNCESKGFPSPVFTIPIRSMRGTHGIRV 777
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 30.4 bits (68), Expect = 5.0
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 694 KFIMSQISKKL---------KSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYD 744
K I +I+K L K K LS +D+ K + + KS ND I+ D
Sbjct: 743 KHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINID 802
Query: 745 NSKKLKSKNLSINNDDFDKSINNDDFEISKYIREIP--------KSNNLKNFANN 791
N K +K + ++ K+I+ + EI K I E+ K + NF NN
Sbjct: 803 NIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENN 857
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 30.4 bits (69), Expect = 5.4
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 650 DAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISKKLKSKNL 709
D F D+G SI+A I ++ +L++ + I+ PT+ F K ++ + K + L
Sbjct: 871 DDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAK----EVDRLKKGEEL 926
Query: 710 SINNDDFDKSINN-DDIDKSIKKNNSKIINDTI--SYDNSKKLKSK 752
+ D + ++D + ++K + D++ SY + K+L +
Sbjct: 927 ADEGDSEIEEEETVLELDYA---KDAKTLVDSLPKSYPSRKELDAS 969
>gnl|CDD|214397 CHL00207, rpoB, RNA polymerase beta subunit; Provisional.
Length = 1077
Score = 30.1 bits (68), Expect = 5.7
Identities = 44/225 (19%), Positives = 66/225 (29%), Gaps = 33/225 (14%)
Query: 587 INWSLIDKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDT---QIKLQIK 643
+N L ++ NI S L N K + + D QI L +K
Sbjct: 22 LNEGLNEELNI-FSKIFDYTGNLELLLFGKNYKLKYPKYNLLSAKSYDSNYSIQIYLPLK 80
Query: 644 SEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTK------IYDYPTLNKFFKFIM 697
+ I + + K+ + IN + I P + +FK +
Sbjct: 81 FINLKTNKIKFIN-----YLIGNLPKMTQRGTFIINGLERVIVSQIIRSPGI--YFKKEI 133
Query: 698 SQISKKLKSKNLSINNDDFDKSI---NNDDIDKSIKKNNSK---------IINDTISYDN 745
+ S K+ S L I N N +I I KN K + D Y
Sbjct: 134 KKNSNKIYSATL-IPNRGSWIKFELDKNKEIWIRIDKNRKKPLIIFLKALGLTDQDIYSR 192
Query: 746 SKKLKSKNLSINNDDFDKSI--NNDDFEISKYIREI-PKSNNLKN 787
K + S EI K + I P + N N
Sbjct: 193 LTKSEFLKKLKPILLNSNSYTNEEILLEIYKNLSPIEPATVNDAN 237
>gnl|CDD|219327 pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus.
The flagellar hook-associated protein 2 (HAP2 or FliD)
forms the distal end of the flagella, and plays a role
in mucin specific adhesion of the bacteria. This
alignment covers the C-terminal region of this family of
proteins.
Length = 230
Score = 29.2 bits (66), Expect = 7.1
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 700 ISKKLKSKNLSINNDDFDKSINND---------DIDKSIKKNNSKIINDTISYDNSK-KL 749
I+ S L ++ D DK++ + D + K + N
Sbjct: 125 ITTDKNSGTLELDEDKLDKALKENPDSVEALFGGDDTGLAKRLDDSLKPYTGSGNGILAS 184
Query: 750 KSKNLSINNDDFDKSINN 767
+ +L+ +K I +
Sbjct: 185 REDSLNKQIKRLNKQIED 202
>gnl|CDD|211427 cd11602, Ndc10, Ndc10 component of the yeast centromere-binding
factor 3. Ndc10 is a multidomain protein conserved in
Saccharomycotina that interacts with kinetochore
components. This model characterizes the majority of the
protein; some family members may have an additional
C-terminal domain that is homologous to transcriptional
activators (GCR1_C). Ndc10 is part of the
centromere-binding factor 3 (CBF3) complex in budding
yeast. The CBF3 complex contains four essential
proteins, Ndc10, Cep3, Ctf13, and Skp1. CBF3/Ndc10 is
essential for the recruitment of the centromeric
nucleosome and formation of the kinetochore. The
Kinetochore is the large, multiprotein assembly that
serves to connect condensed sister chromatids to the
mitotic spindle. Ndc10 forms a dimer and it has
non-sequence-specific DNA binding activity via the DNA
backbone. Ndc10 also plays an important role in the
coordination of cell division. It has been noted that
the protein bears resemblance to the tyrosine
recombinases (type IB topoisomerase/lambda-integrase).
Length = 413
Score = 29.7 bits (67), Expect = 7.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 473 LSAKTKSQLLIYVKKYIEWLNNKESLNISLRD 504
LS +T Q Y KYIEW K L S D
Sbjct: 9 LSPRTAHQYKSYYTKYIEWCRQKGLLPGSEND 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,983,536
Number of extensions: 4211704
Number of successful extensions: 4611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4381
Number of HSP's successfully gapped: 270
Length of query: 831
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 726
Effective length of database: 6,280,432
Effective search space: 4559593632
Effective search space used: 4559593632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)