RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11395
(831 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 540 bits (1395), Expect = e-179
Identities = 159/514 (30%), Positives = 266/514 (51%), Gaps = 46/514 (8%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
++ I G++ LP+ L +FW L G ++ + + W + +
Sbjct: 5 EVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDDRR---WKAGLYGLPRR-----SGK 55
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LKD+ FDA FF + P +A +MDPQ R+LLE++++ I D G + L G++TGV++G SG
Sbjct: 56 LKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSG 115
Query: 134 SDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
S+ + LS + + +G A++ANR+S+F++F GPS+ +DTACSSSL+A+ A
Sbjct: 116 SETSEALSR-DPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAY 174
Query: 194 QSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253
Q+I +G+ A+VGGIN++L P+ ++ + + GMLS +G CK FD +GY R EG V ++
Sbjct: 175 QAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVL 234
Query: 254 LKPLSVALNDHDNIYAIIKGSAITHNGQ-SNGLTAPN-PIQQSYLLQKAWNESNIDVRSL 311
L S+A +YA I + +G G+T P+ IQ+ L++ + + + S
Sbjct: 235 LTKKSLA----RRVYATILNAGTNTDGFKEQGVTFPSGDIQEQ-LIRSLYQSAGVAPESF 289
Query: 312 GYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGI 371
YIE HGTGTK+GDP E+ G+ + E +GS K+N+GH E ASG+
Sbjct: 290 EYIEAHGTGTKVGDPQELNGITR------ALCATRQ---EPLLIGSTKSNMGHPEPASGL 340
Query: 372 TGILKIILCLKNKKLPASLNFYNLNKNI-KLDDSHLYIIDHLQDWVKPKYENKLRIAGVS 430
+ K++L L++ +L+F++ N I L D L ++D + G++
Sbjct: 341 AALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPV-RG------GNVGIN 393
Query: 431 SFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIE 490
SFG GG+N H++L ++TLP + S +T + +++ +
Sbjct: 394 SFGFGGSNVHIILRPNTQPPPAPA--------PHATLPRLLRASGRTPEAVQKLLEQGLR 445
Query: 491 WLNNKESLNISLRDLTLQLQKGRQAMNCRLALVI 524
+ L S+ + + AM R V+
Sbjct: 446 HSQDLAFL--SMLNDIAAV--PATAMPFRGYAVL 475
Score = 35.2 bits (82), Expect = 0.089
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 7/44 (15%)
Query: 577 IAILWQSGININWSLIDKKNI-------RISLPTYPFSKYYYWL 613
I L SGI+ N + + + P + W
Sbjct: 802 IGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWD 845
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 567 bits (1462), Expect = e-178
Identities = 162/519 (31%), Positives = 266/519 (51%), Gaps = 44/519 (8%)
Query: 14 DIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
++ I G++ LP+ L +FW L G ++ + RW + +
Sbjct: 3 EVVIAGMSGKLPES-ENLEEFWANLIGGVDMVTADDR-RW--KAGLYGLPRR-----MGK 53
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LKD+ FDA FF + +A +MDPQ R+LLE++++ I D G + + L G++TGV++G S
Sbjct: 54 LKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSS 113
Query: 134 SDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
SD + LS + + IG A++ANR+S+F++F GPS+ IDTACSSSL+A+ A
Sbjct: 114 SDASEALS-RDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 194 QSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLM 253
Q+I+ GE S A+VGG+N++L P++++ + K GMLS+DG C++FD GY R E V ++
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVL 232
Query: 254 LKPLSVALNDHDNIYAIIKGSAITHNG-QSNGLTAPNPIQQSYLLQKAWNESNIDVRSLG 312
L S+A +YA I + +G + G+T P+ Q L++ + + D SL
Sbjct: 233 LTKKSLA----RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLE 288
Query: 313 YIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGIT 372
YIE HGTGTK+GDP E+ G+ N + E +GS K+N+GH E ASG+
Sbjct: 289 YIEAHGTGTKVGDPQELNGIVN------ALCATRR---EPLLIGSTKSNMGHPEPASGVA 339
Query: 373 GILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSS 431
++K++L L++ +L+++ N I L D L ++D + G++S
Sbjct: 340 ALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPI-RG------GNVGINS 392
Query: 432 FGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEW 491
FG GG+N HV+L + +++ LP + S +T + +++ +
Sbjct: 393 FGFGGSNVHVILQPNSRPAPPPA--------QHAALPRLLQASGRTLEAVQTLLEQGLRH 444
Query: 492 LNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDL 530
+ + L AM R V+
Sbjct: 445 SRDLA----FVGMLNEIAAVSPVAMPFRGYAVLGGEAGS 479
Score = 37.2 bits (86), Expect = 0.026
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPT 688
+ D+ +D+GLDS++ V + + + DL ++ ++
Sbjct: 2142 ASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQLSL 2185
Score = 35.2 bits (81), Expect = 0.11
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 577 IAILWQSGININWSLIDKKNI-------RISLPTYPFSKYYYWL 613
+ L +G+++N + + + P + W
Sbjct: 800 VGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWD 843
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 513 bits (1323), Expect = e-169
Identities = 183/521 (35%), Positives = 282/521 (54%), Gaps = 32/521 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
IAI+G+AC P +++ FW+ + G I E R W + D + G L
Sbjct: 41 IAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRG-WEPDPDARL-------GGML 92
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
FDA FF ISP EA +MDPQQRI+LE+SW+ +E AG+D L GS TGVF G
Sbjct: 93 AAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVSLRGSATGVFTGVGTV 152
Query: 135 DYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQ 194
DY + V + G + +V + R++Y GP++ +DTACSS L A+H A++
Sbjct: 153 DYGPRPDEAPD-EVLGYVGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAME 211
Query: 195 SIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAVMLML 254
S++ E AL GG+ ++ P + G L+ DG CK F K ADG+ EGA +L+L
Sbjct: 212 SLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVL 271
Query: 255 KPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-PIQQSYLLQKAWNESNIDVRSLGY 313
+ LS A + + A+++GSA+ +G SNGLTAP+ P QQ ++++A + + + Y
Sbjct: 272 QRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQR-VIRRALENAGVRAGDVDY 330
Query: 314 IECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITG 373
+E HGTGT+LGDPIE+ L + TY ++ + +GSVK+N+GH +AA+G+ G
Sbjct: 331 VEAHGTGTRLGDPIEVHAL------LSTYGAE-RDPDDPLWIGSVKSNIGHTQAAAGVAG 383
Query: 374 ILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFG 433
++K +L L++ ++P +L+F + I+ D + ++ + W P E + R AGVSSFG
Sbjct: 384 VMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQARSW--PAGE-RPRRAGVSSFG 440
Query: 434 SGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKKYIEWLN 493
GTNAHV++ E + + P+ VLS + + + + + L
Sbjct: 441 ISGTNAHVIVEEAPEADEPEP--------APDSGPVPLVLSGRDEQAMRAQAGRLADHLA 492
Query: 494 NKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQL 534
+ SLRD L R A R A+V+ +RD+ L+ L
Sbjct: 493 REPRN--SLRDTGFTLATRRSAWEHR-AVVVGDRDEALAGL 530
Score = 38.4 bits (90), Expect = 0.010
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 578 AILWQSGININWSLIDKKNIRISLPTYPFSKYYYWLP 614
+ G+ ++WS + LP YPF + YWLP
Sbjct: 864 GEAYAQGVEVDWSPAFADARPVELPVYPFQRQRYWLP 900
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 504 bits (1301), Expect = e-166
Identities = 183/528 (34%), Positives = 285/528 (53%), Gaps = 34/528 (6%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLE--IDIKNKHKG---IN 69
IAI+ +AC LP G+NT + W++L++G + R W L + G ++
Sbjct: 8 IAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRG-WDLARLHHPDPDNPGTSYVD 66
Query: 70 FGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFI 129
G FL D FDA FF +SP EA +MDPQQR+LLE SW+ +E+AG D L G+ TGVF+
Sbjct: 67 KGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFL 126
Query: 130 GASGSDYTRLLSDYIKIP--VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
G + Y + V + G + AV + RISY GPS+ +DTACSSSLV
Sbjct: 127 GVAKFGYGEDTAA----AEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLV 182
Query: 188 AVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGE 247
A+H A++S++ GESS A+VGG ++ P + + + L+ DG K F ADG+ E
Sbjct: 183 ALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSE 242
Query: 248 GAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN-PIQQSYLLQKAWNESNI 306
G +++L+ LS A + + A+++GSA+ +G SNGL+AP+ P Q+ ++++A +
Sbjct: 243 GVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRR-VIRQALESCGL 301
Query: 307 DVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLE 366
+ + +E HGTGT LGDPIE L + TY ++ ++ LGSVK+N+GH +
Sbjct: 302 EPGDVDAVEAHGTGTALGDPIEANAL------LDTYGRD-RDADRPLWLGSVKSNIGHTQ 354
Query: 367 AASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRI 426
AA+G+TG+LK++L L+N +LPA+L+ ++ + ++ Q W + E + R
Sbjct: 355 AAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPW--RRGE-RTRR 411
Query: 427 AGVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVK 486
A VS+FG GTNAHV++ E + P+ V+SA++ + L
Sbjct: 412 AAVSAFGISGTNAHVIVEEAPER-------EHRETTAHDGRPVPLVVSARSTAALRAQAA 464
Query: 487 KYIEWLNNKESLNISLRDLTLQLQKGRQAMNCRLALVIFNRDDLLSQL 534
+ E L + L + L L R R A+V R++ + L
Sbjct: 465 QIAELLERPD---ADLAGVGLGLATTRARHEHRAAVVASTREEAVRGL 509
Score = 38.0 bits (89), Expect = 0.013
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 578 AILWQSGININWSLIDKKNIRISLPTYPFSKYYYWL 613
A SG++I W + +LPTYPF + YWL
Sbjct: 847 ATAHVSGVDIRWDVALPGAAPFALPTYPFQRKRYWL 882
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 151 bits (382), Expect = 2e-37
Identities = 79/533 (14%), Positives = 157/533 (29%), Gaps = 152/533 (28%)
Query: 43 SVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD---------IEC-----FDAPFFKIS 88
+ + I+ + + K + GA L + ++A + IS
Sbjct: 944 QFKHQHGDKVDIFEIPETGEYSVKLLK-GATLYIPKALRFDRLVAGQIPTGWNAKTYGIS 1002
Query: 89 PIEAESMDPQQRILLEL--SWKTIEDAGYD-----SSKLSGSNTGVFIGASG----SDYT 137
+DP L L + +G + S G G SG S
Sbjct: 1003 DDIISQVDP--ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSG-SGMGGVSALR 1059
Query: 138 RLLSDYI-KIPVNAHHCIG---NSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEAL 193
+ D PV N+M+ A + +GP AC++S+ +V +
Sbjct: 1060 GMFKDRFKDEPVQNDILQESFINTMS--AWVNMLLISSSGPIKTPVGACATSVESVDIGV 1117
Query: 194 QSIKNGESSQALVGGINLILHP-----------SNTIAYYKAGML----SRDGICKTFDK 238
++I +G++ +VGG + SNT+ ++ G SR
Sbjct: 1118 ETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSR-----PATT 1172
Query: 239 NADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQSYL-- 296
+G++ +GA + ++ +AL IY I+ +A + G + P P +
Sbjct: 1173 TRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPAPGKGILTTA 1230
Query: 297 ------LQKAWNESNIDVRS-----------------LGYIECHGTGTKLGDPIEIQGLK 333
++ A N+ R L ++ D E +
Sbjct: 1231 REHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER 1290
Query: 334 NAF--HSIITYKKNIKNFY----------------------------------------- 350
+ + + + +
Sbjct: 1291 TREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKAN 1350
Query: 351 EKCGLGSVKTNLGHLEAASG----------ITGILK----------IILCLKNKKLPASL 390
+K ++ + HL + G +TG K + L + +P +
Sbjct: 1351 DKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNR 1410
Query: 391 NFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
N N+ D L +++ K + +R ++SFG G ++
Sbjct: 1411 NADNV-------DKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIV 1456
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 133 bits (336), Expect = 2e-33
Identities = 106/460 (23%), Positives = 186/460 (40%), Gaps = 86/460 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I G+ P G N + W+ KG + I ++
Sbjct: 32 ITGMGALSPIG-NDVKTTWENALKGVNGIDKITRIDTE--------PYSVH-----LAGE 77
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LK+ F+ I EA MD + + + + ++DA D ++ + GV+IG SG
Sbjct: 78 LKN---FNIEDH-IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIG-SG 132
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
+ +L+ + +P+ I + MA ++S GP+
Sbjct: 133 IGGMETFEIAHKQLMDKGPRRVSPFFVPM----LIPD-MA--TGQVSIDLGAKGPNGATV 185
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TAC++ ++ EA + ++ G++ + GG + + + LS + C+
Sbjct: 186 TACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRP 245
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
F + DG+V GEGA +L+++ L A NIYA I G T H +TAP P
Sbjct: 246 FQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYH------ITAPAPE 299
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
S +Q A +++ I+ + + Y+ HGT T +GD E++ +KN F + +
Sbjct: 300 GEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAA---KHLKV- 355
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K+ GH L A GI I L +K+ K+ +++ + LD
Sbjct: 356 --------SSTKSMTGHLLGATGGIEAIF-SALSIKDSKVAPTIHAVTPDPECDLD---- 402
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + Q + + A +S G GG NA +V ++
Sbjct: 403 IVPNEAQ-------DLDITYAMSNSLGFGGHNAVLVFKKF 435
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 131 bits (332), Expect = 5e-33
Identities = 108/460 (23%), Positives = 187/460 (40%), Gaps = 86/460 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ G+ P G N W+ KKG + + LN D K A
Sbjct: 8 VTGIGAVTPIG-NDAETSWENAKKGVNGVAKMTRLNPD--------DFPVK-----IAAE 53
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
LKD FD + + EA MD + + ++D+G + + GV+IG SG
Sbjct: 54 LKD---FDVEKY-LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIG-SG 108
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
+ Y L+ + +P+ I + M + ++S + G +
Sbjct: 109 IGGMETFETQYEIFLNRGHRRVSPFFVPM----MIPD-MG--SGQVSIRFGAKGINSTTV 161
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TAC+++ ++ +A + I+ G++ + GG + + + LS + C+
Sbjct: 162 TACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRP 221
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
FDK+ DG++ GEGA +++L+ A IYA I G T H +TAP P
Sbjct: 222 FDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYH------ITAPAPN 275
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
+ ++ A +++ + + YI HGT T D E Q +K F H+ K I
Sbjct: 276 GEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHA---KKLAI- 331
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K+ GH L A+ GI I +L +++ + +++ N ++ LD
Sbjct: 332 --------SSTKSMTGHTLGASGGIEAIF-ALLTIRDNIIAPTIHLKNQDEVCDLD---- 378
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
Y+ + + E + + +SFG GG NA +V
Sbjct: 379 YVPNEAR-------EANVNVVISNSFGFGGHNATLVFKRI 411
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 131 bits (331), Expect = 7e-33
Identities = 119/461 (25%), Positives = 187/461 (40%), Gaps = 87/461 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ GL P G NTL +W+ L +G + I + S D + FG
Sbjct: 11 VTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDAS--------DQACR-----FGGE 56
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+KD FDA F + EA+ MD + S + I DA ++L+ GV IG +G
Sbjct: 57 VKD---FDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIG-TG 111
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
T LL IP+ I N MA + + GP+
Sbjct: 112 IGGLKVLEDQQTILLDKGPSRCSPFMIPM----MIAN-MA--SGLTAINLGAKGPNNCTV 164
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICK 234
TAC++ A+ +A + ++NG + + GG + P + + A LS +
Sbjct: 165 TACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASR 224
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP 290
FDK+ DG+V GEG+ +L+L+ L AL IY + G A+T H +TAP P
Sbjct: 225 PFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYH------ITAPVP 278
Query: 291 --IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNI 346
+ + A +S + + YI HGT T D E + +K A H+ Y +
Sbjct: 279 DGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHA---YNIAV 335
Query: 347 KNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSH 405
S K+ GH L + GI + ++ + K+P ++N N + LD
Sbjct: 336 ---------SSTKSMTGHLLGGSGGIEAVA-TVMAIAEDKVPPTINLENPDPECDLD--- 382
Query: 406 LYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
Y+ + + +A +SFG GG N + +Y
Sbjct: 383 -YVPGQSR-------ALIVDVALSNSFGFGGHNVTLAFKKY 415
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 128 bits (324), Expect = 6e-32
Identities = 90/466 (19%), Positives = 168/466 (36%), Gaps = 85/466 (18%)
Query: 9 NNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI 68
N + + + + WK L G S I L + + + D+ K
Sbjct: 8 NGGFPSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALED---EFVTKWDLAVK---- 59
Query: 69 NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVF 128
G LKD + ++ M QR+ L + E AG ++ V
Sbjct: 60 -IGGHLKD----PVDSH-MGRLDMRRMSYVQRMGKLLGGQLWESAGSP--EVDPDRFAVV 111
Query: 129 IGASG--------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGP 174
+G +G Y + + + + + + N A A I
Sbjct: 112 VG-TGLGGAERIVESYDLMNAGGPRKVSPLAVQM----IMPN-GA--AAVIGLQLGARAG 163
Query: 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----- 229
+ +ACSS A+ A + I G++ A+ GG+ + A+ +S
Sbjct: 164 VMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEP 223
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGL 285
+ + FDK+ DG+V GE +++++ A A + G+ IT H +
Sbjct: 224 ERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFH------M 277
Query: 286 TAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIIT 341
AP ++ + ++ + + + ++ HGT T +GD E ++ A + +
Sbjct: 278 VAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQAAVY 337
Query: 342 YKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK 400
+ K+ LGH + A + +L +L L++ +P +LN+ + I
Sbjct: 338 ---------------APKSALGHSIGAVGALESVL-TVLTLRDGVIPPTLNYETPDPEID 381
Query: 401 LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
LD + +P+ R A +SFG GG N + Y
Sbjct: 382 LD----VVAG------EPR-YGDYRYAVNNSFGFGGHNVALAFGRY 416
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 128 bits (323), Expect = 9e-32
Identities = 109/454 (24%), Positives = 186/454 (40%), Gaps = 78/454 (17%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ GL P G NT+ WK L G S +I+ + S K F
Sbjct: 22 VTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTS--------AYATK-----FAGL 67
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+KD F+ IS E MD + + + ++D+G + ++ + + G IG SG
Sbjct: 68 VKD---FNCEDI-ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIG-SG 122
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
++T L++ + +P I N M A ++ Y GPS+ I
Sbjct: 123 IGGLGLIEENHTSLMNGGPRKISPFFVPS----TIVN-MV--AGHLTIMYGLRGPSISIA 175
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICK 234
TA +S + + A + I G++ + GG P + A LS +
Sbjct: 176 TAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASR 235
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP--IQ 292
+DK DG+V G+GA ML+L+ A IYA + G ++ + +T+P
Sbjct: 236 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS--SDAYHMTSPPENGAG 293
Query: 293 QSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNFY 350
+ + A ++ I+ +GY+ HGT T GD E Q +K F + + +
Sbjct: 294 AALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAA---SRVLV---- 346
Query: 351 EKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYII 409
S K+ GH L AA + I IL L+++ +P ++N N ++ LD ++
Sbjct: 347 -----SSTKSMTGHLLGAAGAVESIY-SILALRDQAVPPTINLDNPDEGCDLD----FVP 396
Query: 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ + + + +SFG GGTN ++
Sbjct: 397 H------EARQVSGMEYTLCNSFGFGGTNGSLIF 424
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 126 bits (319), Expect = 4e-31
Identities = 107/468 (22%), Positives = 187/468 (39%), Gaps = 87/468 (18%)
Query: 9 NNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGI 68
+ + G+A WK+L S I L++ + E D+ +
Sbjct: 24 GKAFPYVVVTGIAMTTALA-TDAETTWKLLLDRQSGIRTLDD---PFVEEFDLPVR---- 75
Query: 69 NFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVF 128
G L + + ++ IE M QR+ LS + E+AG ++ + V
Sbjct: 76 -IGGHLLE----EFDHQ-LTRIELRRMGYLQRMSTVLSRRLWENAGSP--EVDTNRLMVS 127
Query: 129 IGASG--------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGP 174
IG +G Y + + +K + + N A A + +
Sbjct: 128 IG-TGLGSAEELVFSYDDMRARGMKAVSPLTVQK----YMPN-GA--AAAVGLERHAKAG 179
Query: 175 SLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKA--GMLSR--- 229
+ +AC+S A+ A Q I GE+ A+ GG+ + IA + ++S
Sbjct: 180 VMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAV-PIAGFAQMRIVMSTNND 238
Query: 230 --DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSN 283
G C+ FD++ DG+V GEG +L+++ A NI A I G++IT H
Sbjct: 239 DPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFH----- 293
Query: 284 GLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSI 339
+ AP+P + + + +A + + + ++ H TGT++GD E + + NA +
Sbjct: 294 -MVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP 352
Query: 340 ITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKN 398
Y + K+ LGH + A + IL +L L+++ +P +LN NL+
Sbjct: 353 AVY--------------APKSALGHSVGAVGAVESIL-TVLALRDQVIPPTLNLVNLDPE 397
Query: 399 IKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
I LD + +P+ R A +SFG GG N + Y
Sbjct: 398 IDLD----VVAG------EPR-PGNYRYAINNSFGFGGHNVAIAFGRY 434
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 125 bits (317), Expect = 5e-31
Identities = 99/473 (20%), Positives = 174/473 (36%), Gaps = 93/473 (19%)
Query: 11 LNKDIAIIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKG 67
+ + + I G+ P G N +FW++L G + I + S +++
Sbjct: 1 MKRRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISFFDPS--------PYRSQ--- 48
Query: 68 INFGAFLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGV 127
A P E + MD + + + + +G D L + GV
Sbjct: 49 --VAAEADF---DPVAEG-FGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGV 102
Query: 128 FIGASG--------SDYTRLLSDYIKIPVNAHHC--------IGNSMAVLANRISYFYNF 171
+G S +Y L V+A + + M A +++
Sbjct: 103 SLG-SAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMP--AE-VAWAVGA 158
Query: 172 TGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYY---KAGMLS 228
GP ++ T C+S L +V A+++I+ G + G + + P +A + +A +
Sbjct: 159 EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPI-VVACFDAIRA--TT 215
Query: 229 R-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HN 279
+ + FD DG+V EGA M +L+ AL I+A I G A H
Sbjct: 216 ARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYH- 274
Query: 280 GQSNGLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF- 336
+T + + ++ A +ES D + YI HG+GT+ D E K A
Sbjct: 275 -----MTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALG 329
Query: 337 -HSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKI--ILCLKNKKLPASLNFY 393
H+ + + S+K+ +GH A G + +L L++ +P + N
Sbjct: 330 EHA---RRTPV---------SSIKSMVGHSLGAIG--SLEIAACVLALEHGVVPPTANLR 375
Query: 394 NLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ LD Y+ + E KLR G GG + +VL +
Sbjct: 376 TSDPECDLD----YVPLEAR-------ERKLRSVLTVGSGFGGFQSAMVLRDA 417
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 125 bits (316), Expect = 6e-31
Identities = 111/469 (23%), Positives = 171/469 (36%), Gaps = 111/469 (23%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD 76
+ GL P G F K G S G+
Sbjct: 6 VTGLGALTPIG-VGQEAFHKAQLAGKS-----------------------GVRP------ 35
Query: 77 IECFDAPFFK--------------ISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSG 122
I FDA + E +D + L + +EDAG L
Sbjct: 36 ITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDP 95
Query: 123 SNTGVFIGASG--------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYF 168
G +G +G + L IP+ I N MA + I+
Sbjct: 96 ERVGTLVG-TGIGGMETWEAQSRVFLERGPNRISPFFIPM----MIAN-MA--SAHIAMR 147
Query: 169 YNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
Y FTGPS + TAC++ A+ AL+ I+ GE+ L GG + P A+ LS
Sbjct: 148 YGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALS 207
Query: 229 R-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HN 279
+ + F + DG+V GEGA +L+L+ A IYA + G + H
Sbjct: 208 TRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHH- 266
Query: 280 GQSNGLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF- 336
+T P+P + + +A ++ I +GYI HGT T +GD E+ +K F
Sbjct: 267 -----ITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFG 321
Query: 337 -HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYN 394
H+ + + S K+ +GH L AA + I + L + +P ++N +
Sbjct: 322 DHA---KRLMV---------SSTKSMIGHLLGAAGAVEAIA-TVQALYHGVIPPTINLED 368
Query: 395 LNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ + L D+V E K+ A +SF GG NA +
Sbjct: 369 PDPELDL------------DFVPEPREAKVDYALSNSFAFGGHNAVLAF 405
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 123 bits (312), Expect = 3e-30
Identities = 93/454 (20%), Positives = 179/454 (39%), Gaps = 55/454 (12%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHK-GINFGA 72
+ GL P G + W+ L G + + + E + + A
Sbjct: 5 VTGLGMVTPLG-RGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAA 63
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGY-DSSKLSGSNTGVFIGA 131
F+ F + + ++++ + + + + DA + + + TGV IG
Sbjct: 64 FVPYGSN-PGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIG- 121
Query: 132 SG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTA 181
G + +L+ + ++ P + N MA + +S Y F GP+ TA
Sbjct: 122 GGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVN-MA--SGHVSMKYGFQGPNHAAVTA 178
Query: 182 CSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKT 235
C++ ++ +A + I+ G++ + GG + + + ++ LS +
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNP--IQQ 293
FD + DG+V GEG+ +++L+ A IYA + G ++ G ++ +T P
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMS--GDAHHITQPPEDGKGA 296
Query: 294 SYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNFYE 351
+ +A +S + + Y+ H T T +GD +E + +K F H+ +
Sbjct: 297 VLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHA---TSGTLA---- 349
Query: 352 KCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIID 410
S K GH L AA + I IL + + P +LN N + ++
Sbjct: 350 ---FSSTKGATGHLLGAAGAVEAIF-SILAIHHGVAPMTLNVKNPDPIFDKR----FMPL 401
Query: 411 HLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
K + +R A +SFG GGTNA ++ +
Sbjct: 402 T-----TSK-KMLVRTAMSNSFGFGGTNASLLFA 429
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 123 bits (311), Expect = 3e-30
Identities = 83/460 (18%), Positives = 152/460 (33%), Gaps = 91/460 (19%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I G+ P G L+ +W + G + + S
Sbjct: 13 ITGVGVVAPNG-LGLAPYWSAVLDGRHGLGPVTRFDVS--------RYPAT-----LAGQ 58
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
+ D F AP I DP R+ L + ++DA D L+ + GV +
Sbjct: 59 IDD---FHAPDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTA-NA 113
Query: 134 --------SDYTRLLS---DYIK---IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
++ +L S + + +IS + GPS +
Sbjct: 114 CGGFDFTHREFRKLWSEGPKSVSVYESFA----WFYA-VN--TGQISIRHGMRGPSSALV 166
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
+ L A+ A ++I+ G + + GG++ L P ++ +G +S D
Sbjct: 167 AEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLP 225
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALN-DHDNIYAIIKGSAIT---HNGQSNGLTAPNPI 291
FD+ A GYV GEG +L+L+ + A + Y + G A T G I
Sbjct: 226 FDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAGLERAI 285
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSI-ITYKKNIKN 348
+ A N++ + + G G D E + + F + +T
Sbjct: 286 RL------ALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVPVT------- 332
Query: 349 FYEKCGLGSVKTNLGHLEAASGITGILKI--ILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
KT G L + G + + ++ L+ + + ++ + +D
Sbjct: 333 --------VPKTTTGRLYSGGG--PLDVVTALMSLREGVIAPTAGVTSVPREYGID---- 378
Query: 407 YIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
++ + R A V + G G N+ VL +
Sbjct: 379 LVLGEPR-------STAPRTALVLARGRWGFNSAAVLRRF 411
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 123 bits (311), Expect = 3e-30
Identities = 101/458 (22%), Positives = 165/458 (36%), Gaps = 85/458 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
+ G P G NT +FW L G I + + S D A
Sbjct: 27 VTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHS--------DFDVH-----NAAE 72
Query: 74 LKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASG 133
++D F + + D L + + + A D L+ GV + SG
Sbjct: 73 IQD---FPFDKY-FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVA-SG 127
Query: 134 --------SDYTRLLSDYIK------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
RL K +P + N MA + ++ + G I+
Sbjct: 128 IGGIKEIEDQVLRLHEKGPKRVKPMTLPK----ALPN-MA--SGNVAMRFGANGVCKSIN 180
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TACSSS A+ +A +SIK G LVGG + P + LS
Sbjct: 181 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIP 240
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
FDK+ +G+V GEG+ ML+L+ L A I A + G T H +T+P+P
Sbjct: 241 FDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH------MTSPHPE 294
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
++ A E+ I + Y+ HGT T + E +
Sbjct: 295 GQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLG------------ 342
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
++ + S K+ GH L AA + I+ I +++ +P + ++ I+ + +
Sbjct: 343 -KEVPVSSTKSFTGHLLGAAGAVEAIV-TIEAMRHNFVPMTAGTSEVSDYIEAN----VV 396
Query: 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
E ++ A ++FG GG NA + +
Sbjct: 397 YGQGL-------EKEIPYAISNTFGFGGHNAVLAFKRW 427
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 120 bits (304), Expect = 2e-29
Identities = 91/459 (19%), Positives = 150/459 (32%), Gaps = 86/459 (18%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFLKD 76
I G+ G + + LK G + + + W D A L
Sbjct: 10 ITGMGGVTALG-SRWDEIEAALKAGRNAVRRM--PDW------DYFESLH-TRLAAPLPG 59
Query: 77 IECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFIGASGSD 135
F P + SM + S + DAG+ +S GV G+S
Sbjct: 60 ---FAQPAD-WPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSGS 115
Query: 136 YTRLLSDYIK-------------IPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTAC 182
+ + + + A +S F++ G + +AC
Sbjct: 116 VEPIRAFGTMLESGSMTDVTSNSYVQ----MMPH-TT--AVNVSLFWDLKGRIVPTSSAC 168
Query: 183 SSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGM--LSR-----DGICKT 235
+S A+ A ++I G+ + L GG + P+ +A + + S +
Sbjct: 169 ASGSQAIGYAYENIAMGKQTLMLAGGAEELSGPA--VAVFDT-LYATSTRNDEPHLTPRP 225
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNPI 291
FD DG V GEGA L+L+ A I+A I G H +T P
Sbjct: 226 FDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH------MTQPTAS 279
Query: 292 QQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIKNF 349
+ +Q A ++ +D ++ Y+ HGT T GD E Q F I+
Sbjct: 280 TMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGERMPIS-------- 331
Query: 350 YEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIK-LDDSHLY 407
S+K+ +GH L A + I +K +LN ++ LD Y
Sbjct: 332 -------SLKSYVGHTLGACGALEAWW-TIEMMKRNWYAPTLNLTEVDPACAPLD----Y 379
Query: 408 IIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
I + ++F GG N ++
Sbjct: 380 IRGEAR-------AIDAEYVMSNNFAFGGINTSLIFRRV 411
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 116 bits (293), Expect = 7e-28
Identities = 110/461 (23%), Positives = 178/461 (38%), Gaps = 82/461 (17%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I G+ P G W L G S + I A+
Sbjct: 25 ITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVGEEYK--------SIPCS-----VAAY 70
Query: 74 LKDIEC---FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVFI 129
+ F+ F +S + +SM + + + ++D+G+ S+ TGV I
Sbjct: 71 VPRGSDEGQFNEQNF-VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAI 129
Query: 130 GASG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRISYFYNFTGPSLLID 179
G G S+ Y K+ P + N MA A ++S Y GP+ +
Sbjct: 130 G-MGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVN-MA--AGQVSIRYKLKGPNHAVS 185
Query: 180 TACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKT 235
TAC++ AV ++ + I +G++ + GG + + P + + +A LS C+
Sbjct: 186 TACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRP 245
Query: 236 FDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAPNP- 290
F DG+V GEGA +L+L+ A+ IYA + G ++ H +TAP+P
Sbjct: 246 FHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGH------ITAPDPE 299
Query: 291 -IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKKNIK 347
+ A ++ + + YI H T T LGD E + +K+ F H+ Y +
Sbjct: 300 GEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHA---YALAV- 355
Query: 348 NFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHL 406
S K GH L AA + L +KLP +LN L+
Sbjct: 356 --------SSTKGATGHLLGAAGAVEAAF-TTLACYYQKLPPTLNLDCSEPEFDLN---- 402
Query: 407 YIIDHLQDWVKPKYENKLRIAGVS---SFGSGGTNAHVVLS 444
Y+ Q+W K + SFG GGTNA + ++
Sbjct: 403 YVPLKAQEW-------KTEKRFIGLTNSFGFGGTNATLCIA 436
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 116 bits (293), Expect = 9e-28
Identities = 108/479 (22%), Positives = 182/479 (37%), Gaps = 79/479 (16%)
Query: 1 MEINNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEID 60
+E ++ + + G+ P G W+ L G S + L + E+
Sbjct: 12 LEAQTQGPGSMTLRVVVTGIGIVSPLG-CGKELVWQRLIGGGSGLRRLGD---DIAGELS 67
Query: 61 IKNKHKGINFGAFLKDIECFDAPFFK----ISPIEAESMDPQQRILLELSWKTIEDAGYD 116
K G ++D+ F + E MD ++ + + + + +AG+
Sbjct: 68 AK-------VGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWA 120
Query: 117 -SSKLSGSNTGVFIGASG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRI 165
++ T + SG ++ R+ ++ P + N +A A +I
Sbjct: 121 PEAEQQRERTATVVA-SGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSN-LA--AGQI 176
Query: 166 SYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAG 225
S + F GP TAC++S+ A+ +A++ I+ GE+ L GG + + A
Sbjct: 177 SIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAAR 236
Query: 226 MLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT-- 277
LS + FD++ DG+V GEGA M++++ L AL A I G T
Sbjct: 237 ALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTAD 296
Query: 278 --HNGQSNGLTAPNP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLK 333
H +TA ++ A ++ + Y+ H T T +GD EI+ LK
Sbjct: 297 AYH------MTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALK 350
Query: 334 NAF--HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASL 390
F + I S K+ GH L AA I IL L++ LP +L
Sbjct: 351 TVFGVGA----GPAI---------SSTKSATGHLLGAAGAIEAAF-SILALRDGVLPGTL 396
Query: 391 NFYNLNKNIKLDDSHLYIIDHLQDWV--KPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
N + + D L D + + + IA + FG GG NA V+ Y
Sbjct: 397 NLEHPDPA----------ADGL-DLIGPAAR-HVPVEIALSNGFGFGGVNASVLFRRYP 443
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 112 bits (283), Expect = 1e-26
Identities = 87/360 (24%), Positives = 141/360 (39%), Gaps = 58/360 (16%)
Query: 110 IEDAGYDSSKLSGSNTGVFIGASGSDYTRLLSDYIKI----------PVNAHHCIGNSMA 159
I DAG ++S TG+ +G SG TR + D I P + + A
Sbjct: 104 IADAGLTEEEVSNERTGIIMG-SGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSS-TA 161
Query: 160 VLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTI 219
+ ++ F+ G + I +AC++S + A + I+ G+ + GG + ++
Sbjct: 162 --SATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTL-SV 218
Query: 220 AYYKAG-MLSR-----DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKG 273
+ G M S+ + +DKN DG+V GA +L+L+ L AL IY I G
Sbjct: 219 LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVG 278
Query: 274 SAITHNGQSNG--LTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQG 331
T S+G + AP+ ++ A + + YI H T T GD EI+
Sbjct: 279 YGAT----SDGYDMVAPSGEGAIRCMKMALSTVTSKI---DYINPHATSTPAGDAPEIEA 331
Query: 332 LKNAF--HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPA 388
++ F I + K+ GH L A I +L ++N +
Sbjct: 332 IRQIFGAGD---VCPPI---------AATKSLTGHSLGATGVQEAIYS-LLMMQNNFICE 378
Query: 389 SLNFYNLNKNIK-LDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
S + L+ + I+ D +L +SFG GGTNA +V Y
Sbjct: 379 SAHIEELDPAFADMP-----IVRKRID------NVQLNTVLSNSFGFGGTNATLVFQRYQ 427
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 112 bits (283), Expect = 1e-26
Identities = 105/464 (22%), Positives = 184/464 (39%), Gaps = 83/464 (17%)
Query: 17 IIGLACYLPKGINTLSKFWKILKKGSS---VIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I GL P + + + WK L G S + E D+ +
Sbjct: 14 ITGLGLVSPLA-SGVEETWKRLLAGESGARRVTEFEVD--------DLACQ-----IACR 59
Query: 74 LKDIEC----FDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYD-SSKLSGSNTGVF 128
+ + F+ + P E +DP + + + ++DAG+ + TGV
Sbjct: 60 IPVGDGTNGTFNPDLH-MDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVL 118
Query: 129 IGASG-------SDYTRLLSD--YIKI-PVNAHHCIGNSMAVLANRISYFYNFTGPSLLI 178
IG SG + L D +I P + N +A + +S + GP+ +
Sbjct: 119 IG-SGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLIN-LA--SGHVSIKHKLRGPNHSV 174
Query: 179 DTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRD------GI 232
TAC++ A+ +A + I G++ + GG + + + LS +
Sbjct: 175 VTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAA 234
Query: 233 CKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAIT----HNGQSNGLTAP 288
+ +D++ DG+V GEGA +++L+ L AL IYA + G ++ H +TAP
Sbjct: 235 SRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFH------ITAP 288
Query: 289 NP--IQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAF--HSIITYKK 344
+ A + I + YI HGT T + D IE+ ++ + K
Sbjct: 289 TESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAA---AKI 344
Query: 345 NIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD 403
++ S K+++GH L AA + L +++ PA+LN N ++D
Sbjct: 345 SM---------SSTKSSIGHLLGAAGAAEAVF-STLAIRDNIAPATLNLDNPAAQTRID- 393
Query: 404 SHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
+ ++ K+ +A +SFG GGTNA +VL Y
Sbjct: 394 ---LVPHKPRER-------KIDVALSNSFGFGGTNASLVLRRYT 427
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 112 bits (282), Expect = 1e-26
Identities = 76/358 (21%), Positives = 137/358 (38%), Gaps = 55/358 (15%)
Query: 110 IEDAGYDSSKL-SGSNTGVFIGASG---------SDYTRLLSDYIKI-PVNAHHCIGNSM 158
I DAG + G+ G+ G +D R + P + +
Sbjct: 83 IADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMAS-G 141
Query: 159 AVLANRISYFYNFTGPSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNT 218
+ ++ + G + I +AC++S + A++ I+ G+ GG +
Sbjct: 142 V--SACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEM-A 198
Query: 219 IAYYKAGMLSR------DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIK 272
+ G LS + +T+D + DG+V G M++++ L AL +IYA I
Sbjct: 199 CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIV 258
Query: 273 GSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGL 332
G T +G + AP+ ++ A + + + Y+ HGT T +GD E+ +
Sbjct: 259 GYGATSDGAD--MVAPSGEGAVRCMKMAMHGVDTPI---DYLNSHGTSTPVGDVKELAAI 313
Query: 333 KNAF--HSIITYKKNIKNFYEKCGLGSVKTNLGH-LEAASGITGILKIILCLKNKKLPAS 389
+ F S + + K GH L AA I +L L++ + S
Sbjct: 314 REVFGDKSPA--------------ISATKAMTGHSLGAAGVQEAIYS-LLMLEHGFIAPS 358
Query: 390 LNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEYN 447
+N L++ I+ + +L +SFG GGTNA +V+ +
Sbjct: 359 INIEELDEQAAGL----NIVTETT-------DRELTTVMSNSFGFGGTNATLVMRKLK 405
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 98.5 bits (245), Expect = 5e-21
Identities = 53/296 (17%), Positives = 97/296 (32%), Gaps = 44/296 (14%)
Query: 80 FDAPFFKISPIEAESMDPQQRILLEL--SWKTIEDAGYD-----SSKLSGSNTGVFIGAS 132
+DA + + + +DP L L + + +G + S G IG S
Sbjct: 1168 WDARRYGVPEDIIQQVDP--VTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIG-S 1224
Query: 133 GSDYTRLLSDYIKI-----PVNAHHCIG---NSMAVLANRISYFYNFTGPSLLIDTACSS 184
G T L K PV N+MA A + TGP AC++
Sbjct: 1225 GVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMA--AWVNMLLLSSTGPIKTPVGACAT 1282
Query: 185 SLVAVHEALQSIKNGESSQALVGGIN-----LILHPSNTIAYYKAGMLSRDGI-----CK 234
++ ++ +I G++ LVGG + +N A A G +
Sbjct: 1283 AVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSR 1342
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPNPIQQS 294
+G++ +G + ++ +AL IY I+ ++ + G + P P Q
Sbjct: 1343 PTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDK--IGRSVPAPGQGV 1400
Query: 295 Y-LLQKAWNESNIDVRSLGY-----------IECHGTGTKLGDPIEIQGLKNAFHS 338
++ + + Y I+ L E+ +K+
Sbjct: 1401 LTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSE 1456
Score = 76.1 bits (187), Expect = 3e-14
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 13/147 (8%)
Query: 297 LQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLG 356
L+ A + + LG HGT T D E + + K N
Sbjct: 1503 LRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGN------AVLGI 1556
Query: 357 SVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWV 416
K GH + A+G + + L +P + N N D + D++
Sbjct: 1557 FQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADN-------VDKVMEQFDYIVYPS 1609
Query: 417 KPKYENKLRIAGVSSFGSGGTNAHVVL 443
+ + ++ V+SFG G A +
Sbjct: 1610 RSIKTDGIKAFSVTSFGFGQKGAQAIG 1636
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 90.4 bits (224), Expect = 1e-18
Identities = 75/482 (15%), Positives = 145/482 (30%), Gaps = 137/482 (28%)
Query: 80 FDAPFFKISPIEAESMDPQQRILLEL--SWKTIEDAGYD-----SSKLSGSNTGVFIGAS 132
++A + IS +DP L L + +G + S G G S
Sbjct: 1193 WNAKTYGISDDIISQVDP--ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSG-S 1249
Query: 133 G----SDYTRLLSDYI-KIPVNAHHCIG---NSMAVLANRISYFYNFTGPSLLIDTACSS 184
G S + D PV N+M+ A + +GP AC++
Sbjct: 1250 GMGGVSALRGMFKDRFKDEPVQNDILQESFINTMS--AWVNMLLISSSGPIKTPVGACAT 1307
Query: 185 SLVAVHEALQSIKNGESSQALVGGINLILHP-----------SNTIAYYKAGML----SR 229
S+ +V +++I +G++ +VGG + SNT+ ++ G SR
Sbjct: 1308 SVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSR 1367
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN 289
+G++ +GA + ++ +AL IY I+ +A + G + P
Sbjct: 1368 -----PATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPA 1420
Query: 290 PIQQSYL--------LQKAWNESNIDVRS-----------------LGYIECHGTGTKLG 324
P + ++ A N+ R L ++
Sbjct: 1421 PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSE 1480
Query: 325 DP----------IEIQGLKNAFHSIITYKKN----------IKNFYEKCGL--------- 355
D I + + + + ++ GL
Sbjct: 1481 DQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1540
Query: 356 --------------GSVKTNLGHLEAASG----------ITGILK----------IILCL 381
++ + HL + G +TG K + L
Sbjct: 1541 FHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQIL 1600
Query: 382 KNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHV 441
+ +P + N N+ D L +++ K + +R ++SFG G
Sbjct: 1601 NSGIIPGNRNADNV-------DKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQA 1653
Query: 442 VL 443
++
Sbjct: 1654 IV 1655
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 89.1 bits (220), Expect = 3e-18
Identities = 80/563 (14%), Positives = 171/563 (30%), Gaps = 147/563 (26%)
Query: 323 LGDPIEIQGLKNAFHSIITYKKNI-KNFYEKCGLGSVKTNLGHLEAASGITGILKIILCL 381
+ + G F ++++ ++ + + F E ++ N L + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE----EVLRINYKFLMSP------------I 98
Query: 382 KNKKLPASLNF--YNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA--------GVSS 431
K ++ S+ Y ++ +D+ ++ ++ + + KLR A V
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLI 155
Query: 432 FGSGGTN----AHVVLSEYNIE--INNKI--INNISINFENSTLPLIFVLSAKTKSQLLI 483
G G+ A V Y ++ ++ KI +N + N + L ++ L +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 484 YVKKYIEWLNNKESLNISLRDLTLQLQKGR--------------QAMN--CRLALVIFNR 527
S+ LR L A N C++ L+ R
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLT-TR 273
Query: 528 D----DLLSQLNFFYEKKIIPMQDKLDSFNESKNKIDIATVINLAIKE--KNFKKIAILW 581
D LS I + + + K + ++ ++ +
Sbjct: 274 FKQVTDFLSAAT----TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 582 QSGININWSLIDKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQ 641
S I I + + + L I +S + + +
Sbjct: 330 LSII---AESIRDGLATW--------DNWKHVNCDKLTTIIESSLNVL--EPAEYR---- 372
Query: 642 IKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSI---NSTKIYDYPTLNKFFKFIMS 698
+ FD ++F + I + L LS+ + K +NK K+ S
Sbjct: 373 ---KMFDRLSVFPP---SA--------HIPTIL-LSLIWFDVIKSDVMVVVNKLHKY--S 415
Query: 699 QISKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINN 758
+ K+ K +SI + + + ++ + ++ + I++ Y+ K S +L
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLEN-EYALHR---SIVD---HYNIPKTFDSDDLIPPY 468
Query: 759 DDFDKSINNDDFEISKYI--------REIPKSNNLKNFANNLL----IGRNCVSKI--AS 804
D +Y + I + F L + + KI S
Sbjct: 469 LD-------------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDS 511
Query: 805 TRW-----IIDDFYDFR-YDNAI 821
T W I++ + Y I
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYI 534
Score = 69.9 bits (170), Expect = 2e-12
Identities = 103/673 (15%), Positives = 194/673 (28%), Gaps = 178/673 (26%)
Query: 58 EIDIKNKH-KGINFGAFLKDIECFDAPFFKISPIEAESMD-------PQQRILLELSWKT 109
E + K + AF+ + +C D S + E +D L L W T
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFW-T 70
Query: 110 IEDAGYDSSKLSGSNTGVFIGAS-GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYF 168
+ + + F+ +Y L+S SM Y
Sbjct: 71 LLSKQEEMVQ-------KFVEEVLRINYKFLMSPI------KTEQRQPSM----MTRMYI 113
Query: 169 YN----FTGPSLLIDTACS--SSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYY 222
+ + S + + +AL ++ + N+++
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---------NVLID-------- 156
Query: 223 KAGMLSRDGICKT-----------FDKNAD--------GYVRGEGAVMLMLKPLSVALND 263
G+L G KT D V+ ML+ L + D
Sbjct: 157 --GVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-D 210
Query: 264 HDNIYAIIKGSAITHNGQS-----NGLTAPNPIQQSYL-LQKAWNESNIDVRSLGYIECH 317
+ S I S L P + L L N + +L C
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---C- 266
Query: 318 GTGTKL----GDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGH------LEA 367
K+ L A + I+ + + L E
Sbjct: 267 ----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 368 ASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQ-DWVKPKYENKLRI 426
+ L II + A+ + + KL ++ L+ + ++ +L +
Sbjct: 323 LTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSV 380
Query: 427 AGVSSFGSGGTNAHV---VLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLI 483
F +AH+ +LS ++ + + +L
Sbjct: 381 -----FPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---------------- 416
Query: 484 YVKKYIEWLNNKESLNISLRDLTLQLQK---GRQAMNCRL-----ALVIFNRDDLLSQL- 534
V+K KES IS+ + L+L+ A++ + F+ DDL+
Sbjct: 417 -VEK-----QPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 535 -NFFYEK-----KIIPMQDKLDSFNESKNKIDIATVINLAIKEKNFKKIAILWQSGININ 588
+FY K I +++ F ++ E+ + + W + +I
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRM--------VFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 589 WSLID----KKNIRISLPTYP--FSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQI 642
+L K I + P Y + +LPK + + + S T + +I L
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPK--IEENLICSKYTDL-----LRIAL-- 572
Query: 643 KSEQFDDDAIFID 655
+D+AIF +
Sbjct: 573 ---MAEDEAIFEE 582
Score = 36.8 bits (84), Expect = 0.039
Identities = 35/256 (13%), Positives = 69/256 (26%), Gaps = 96/256 (37%)
Query: 642 IKSEQFDDDAIFI----DMGLDSIIAVTWI--RKINSQLDLSINSTKIYDYPTLNKFFKF 695
+ E+ D I + G + W K + + +Y F
Sbjct: 46 LSKEEIDH--IIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINYK-------F 93
Query: 696 IMSQISKKLKSKNLS----------INNDD--FDK-SINNDDIDKSIKK----------- 731
+MS I + + ++ + ND+ F K +++ +++
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 732 ------------------NNSKIIND--------TISYDNSKKL---KSKNLSINND--- 759
+ K+ + NS + + L D
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 760 ----DFDKSINNDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDF 815
D +I I +R + KS K + N LL+ N V + F +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLN-V----QNAKAWNAF-NL 264
Query: 816 RYDNAIGKLICKKMVL 831
CK ++
Sbjct: 265 S---------CKILLT 271
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 70.1 bits (172), Expect = 8e-15
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
L + + +D F+D+GLDSI+ V W IN +L++ +TK+YDYPTL + +I
Sbjct: 34 LYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQI 93
Query: 700 IS 701
+S
Sbjct: 94 LS 95
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 72.7 bits (178), Expect = 1e-14
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
L + Q A F+D+G+DS+ W+R ++ + + + IY +PTL + +
Sbjct: 143 LFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRR 202
Query: 700 I 700
+
Sbjct: 203 V 203
Score = 71.1 bits (174), Expect = 4e-14
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
L + Q D + F+++GLDS+IA WIR+IN L I + IY YP F +++ +Q
Sbjct: 39 LYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQ 98
Query: 700 IS 701
+
Sbjct: 99 LQ 100
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier
protein FA structural genomics, PSI, protein structure
initiative; NMR {Nostoc SP} PDB: 2afe_A
Length = 88
Score = 57.4 bits (139), Expect = 2e-10
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKF 692
L + + D + F + L+S A+ + ++ L +N I++YPT+ +
Sbjct: 27 LDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQL 79
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 56.0 bits (135), Expect = 4e-10
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQL--DLSINSTKIYDYPTLNKFFKFIM 697
I E+ DD+ F DMG+DS+ ++ + L DL + D T+ F++
Sbjct: 24 SGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFML 83
Query: 698 SQ 699
Sbjct: 84 GS 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 1e-08
Identities = 107/689 (15%), Positives = 194/689 (28%), Gaps = 254/689 (36%)
Query: 74 LKDIECFDAPFFKI--SPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGA 131
L++ F KI P E + D + EL G F+G
Sbjct: 33 LQEQ------FNKILPEPTEGFAADDEPTTPAEL-------------------VGKFLG- 66
Query: 132 SGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYF-YNFTGPSLLIDTACSSSLVAVH 190
Y+ V +G VL ++ F + + D +H
Sbjct: 67 -----------YVSSLVEPSK-VGQFDQVLNLCLTEFENCYLEGN---D---------IH 102
Query: 191 EALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADGYVRGEGAV 250
+ E+ LV LI Y A ++++ + FDK ++
Sbjct: 103 ALAAKL-LQENDTTLVKTKELIK------NYITARIMAK----RPFDKKSNS-------- 143
Query: 251 MLMLKPLSVALNDHD-NIYAIIKGSAITHNGQSNGLTAPNPIQQSYL--LQKAWNESNID 307
L A+ + + + AI GQ N Y L+ + ++
Sbjct: 144 -----ALFRAVGEGNAQLVAIF-------GGQGNT--------DDYFEELRDLYQTYHVL 183
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEA 367
V L I+ +I + + + + GL ++ L +
Sbjct: 184 VGDL-----------------IKFSAETLSELIRTTLDAEKVFTQ-GL-NILEWLENPSN 224
Query: 368 ASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIA 427
L I P S + I+L +H + L + P E + +
Sbjct: 225 TPD-KDYLLSI--------PISCPLIGV---IQL--AHYVVTAKLLGF-TPG-ELRSYLK 268
Query: 428 GVSSFGSGGTNAHVVLSEYNIEINNKIINNISINFENSTLPLIFVLSAKTKSQLLIYVKK 487
G + G +V + + + + + V+K
Sbjct: 269 GATGHSQG-----LVTA-------------------------VAIAETDSWESFFVSVRK 298
Query: 488 YIEWL----------NNKESLNISLRDLTLQLQKGRQA-MNCRLALVIFNRDDLLSQLNF 536
I L SL S+ + +L+ +G + M L I + Q+
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LSI--SNLTQEQV-- 349
Query: 537 FYEKKIIPMQDKLDSFNES---KNKIDIATVIN-------------LAIKEKNFKKIAIL 580
QD ++ N +++I+ ++N L +K
Sbjct: 350 ---------QDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKA- 398
Query: 581 WQSGININWSLIDKKNIRIS---LP-TYPF-SKYYY--------WLPKNNLNKKISNSD- 626
SG++ + ++ ++ S LP PF S L KNN+ + D
Sbjct: 399 -PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV--SFNAKDI 455
Query: 627 -----DT-------QISNSDDTQIKLQIKSEQFD-DDAI------FIDMGLDSIIAV--- 664
DT +S S +I I + +D G +
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 665 -------TWIRKINSQLDLSINSTKIYDY 686
T +R I + L IN Y +
Sbjct: 516 THRNKDGTGVRVIVAG-TLDINPDDDYGF 543
Score = 48.9 bits (116), Expect = 8e-06
Identities = 58/350 (16%), Positives = 99/350 (28%), Gaps = 148/350 (42%)
Query: 107 WK-----TIEDAGYDSSKLSGSN----TGVFIGASG----SDYTRLLSDYIKIPVNAHHC 153
W + G+ + +N T F G G +Y+ ++ + I
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 154 IGNSMAVLANRISYFYNFTGP-SLLIDT--------ACSSSLVAVHEALQS--IKN---- 198
I N S Y F LL T A E L+S +
Sbjct: 1706 IFKE----INEHSTSYTFRSEKGLLSATQFTQPALTLME---KAAFEDLKSKGLIPADAT 1758
Query: 199 ------GESSQALVGGINLILHPSNTIAYYKAGMLSRDGICKTFDKNADG----YVRGEG 248
GE + AL + A ++S + + RG
Sbjct: 1759 FAGHSLGEYA-ALA-------------SL--ADVMS-------IE---SLVEVVFYRGM- 1791
Query: 249 AVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSN-GLTAPNPIQQSYLLQKAWNESNID 307
+ A+ + G+SN G+ A NP + + ++
Sbjct: 1792 -----------TMQV-----AVPRDE----LGRSNYGMIAINPGRVA---------ASFS 1822
Query: 308 VRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNL----- 362
+L Y+ G + G +EI N+ N+
Sbjct: 1823 QEALQYV-VERVGKRTGWLVEI-----V------------NY-----------NVENQQY 1853
Query: 363 ---GHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDD--SHLY 407
G L A +T +L I K +K+ L K++ L++ HL+
Sbjct: 1854 VAAGDLRALDTVTNVLNFI---KLQKIDII----ELQKSLSLEEVEGHLF 1896
Score = 38.1 bits (88), Expect = 0.016
Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 88/240 (36%)
Query: 31 LSKFWKI--------LKKGSSVIEELNESRWIWPLEIDIKNKH-KGINFGAFLKDIECF- 80
L ++ +K + + EL + +D + +G+N +L++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRT------TLDAEKVFTQGLNILEWLENPSNTP 226
Query: 81 DAPFFKISPIEAESMDPQQRI-LLELSW--KTIEDAGYD----SSKLSGSNTG------- 126
D + PI S P I +++L+ T + G+ S L G+ TG
Sbjct: 227 DKDYLLSIPI---SC-PL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVT 279
Query: 127 -VFIGASGS--DYTRLLSDYIK----IPVNAHHCIGNS--------------------M- 158
V I + S + + I I V + N+ M
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 159 AV-------LANRISYF--------------YNFTGPSLLIDTACSSSLVAVHEALQSIK 197
++ + + ++ N G L+ + SL ++ L+ K
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQSLYGLNLTLRKAK 397
Score = 30.0 bits (67), Expect = 4.1
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 2 EI-NNNSINNLNKDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEID 60
EI N N N+ G + ++T++ +K I EL +S LE +
Sbjct: 1842 EIVNYNV---ENQQYVAAGDL----RALDTVTNVLNFIKLQKIDIIELQKS---LSLE-E 1890
Query: 61 IKNK 64
++
Sbjct: 1891 VEGH 1894
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 41.4 bits (97), Expect = 6e-05
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 650 DAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701
D F +G DS+ + + +I + + + T + + ++
Sbjct: 31 DVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLT 82
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 44.6 bits (106), Expect = 9e-05
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 468 PLIFVLSAKTKSQLLIYVKKYIEWLNNKESLNISLRDL--TLQLQKGRQAMNCRLALVIF 525
+ V A + L + + L DL L R + R A +
Sbjct: 3 HELVVCGAPDAAALTGLLTRVRAAATALSRP--ELTDLAAGLAAA-HRGDVPARFAAAVR 59
Query: 526 NRDDLLSQL 534
+ D L++ L
Sbjct: 60 DADGLVAAL 68
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
polyketide synthase, PKS, biosynthetic protein; NMR
{Streptomyces roseofulvus} SCOP: a.28.1.1
Length = 83
Score = 37.5 bits (87), Expect = 0.001
Identities = 7/54 (12%), Positives = 22/54 (40%)
Query: 648 DDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701
+ D F+D+G DS+ + + + +++ + T + + + +
Sbjct: 28 ELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPA 81
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 650 DAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701
D F D+G DS+ + ++ S+ +SI T + I ++
Sbjct: 32 DLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALA 83
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide
synthase, alpha- helical bundle, acyltransferase; NMR
{Saccharopolyspora erythraea} PDB: 2ju2_A
Length = 95
Score = 36.4 bits (85), Expect = 0.004
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPT 688
+ F ++G DS+ AV +N+ L + ST ++D+P
Sbjct: 39 KAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPN 82
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 37.1 bits (87), Expect = 0.022
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
+ + C SS+ A+H A Q+I G +VGG
Sbjct: 86 AAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 37.1 bits (87), Expect = 0.023
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P++ ++ C SS+ A+H+A + I G++ LVGG
Sbjct: 83 PAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGG 117
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 36.7 bits (84), Expect = 0.029
Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 10/203 (4%)
Query: 618 LNKKISNSDDTQIS----NSDDTQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQ 673
+ +++ + +I+ +D T L +Q+ + + + L + I S+
Sbjct: 42 VQRQVFAENKDEIALVLFGTDGTDNPLS-GGDQYQNITVHRHLMLPD---FDLLEDIESK 97
Query: 674 LDLSINSTKIYDYPTLNKFFKFIMSQISKKLKSKNLSINNDDFDKSINNDDIDKSIKKNN 733
+ D L I + K K D + +D I
Sbjct: 98 IQPGSQQADFLD--ALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLK 155
Query: 734 SKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDFEISKYIREIPKSNNLKNFANNLL 793
I+ S + + + F + F + + + + L
Sbjct: 156 KCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISL 215
Query: 794 IGRNCVSKIASTRWIIDDFYDFR 816
G + + +I S + F+
Sbjct: 216 EGEDGLDEIYSFSESLRKLCVFK 238
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 36.3 bits (85), Expect = 0.033
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
++ C S L AV +A ++I GE + G
Sbjct: 81 AGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSG 115
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 36.3 bits (85), Expect = 0.042
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
I CSS + A+ A I+ G S + GG
Sbjct: 83 TGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGG 117
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 35.5 bits (83), Expect = 0.068
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P++ I+ C S L +V A Q I G++ LVGG
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGG 119
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 35.1 bits (82), Expect = 0.094
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
PS ++ C S L +V A QSI +GE+ + GG
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGG 117
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 34.8 bits (81), Expect = 0.12
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGGI 209
+ ++ C+S L AV+ A Q +++G L GG+
Sbjct: 88 GGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGV 123
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 34.9 bits (81), Expect = 0.13
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 634 DDTQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFF 693
+ + L +S++ DD ID GLDS+ + + ++ I+ + PT++ ++
Sbjct: 551 REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARW-RKVHGDIDFVMLAKNPTIDAWW 609
Query: 694 KFIMSQI 700
K + ++
Sbjct: 610 KLLSREV 616
>2cg5_B Fatty acid synthase; transferase-hydrolase complex,
transferase/hydrolase (comple fatty acid biosynthesis,
phosphopantetheine transferase; HET: COA; 2.7A {Homo
sapiens} PDB: 2png_A
Length = 91
Score = 32.0 bits (72), Expect = 0.13
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNK 691
+ D+ D+GLD++++V + + +L+L ++ ++ TL K
Sbjct: 25 AAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRK 70
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 34.4 bits (80), Expect = 0.15
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P + ++ CSS L AV++ IK G+ L G
Sbjct: 93 PFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 34.4 bits (80), Expect = 0.17
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 648 DDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKF 692
DD F +G S+ A+ + ++++ + I +++ PT+ +
Sbjct: 31 LDD--FFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQEL 73
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, S genomics, PSI-2, protein structure
initiative; NMR {Agrobacterium tumefaciens} SCOP:
a.28.1.1
Length = 105
Score = 31.9 bits (72), Expect = 0.22
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSI 678
+L + D+A GL S +V + I D+
Sbjct: 34 FGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEF 75
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 34.0 bits (79), Expect = 0.22
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
+ ++ C S L AV +Q I G++S + GG
Sbjct: 81 TAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGG 115
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 33.3 bits (77), Expect = 0.32
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
++ CSS L AV + +IK G + G
Sbjct: 110 AVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 144
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.41
Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 9/25 (36%)
Query: 382 KN--KKLPASLNFYNLNKNIKLDDS 404
K KKL ASL Y DDS
Sbjct: 19 KQALKKLQASLKLYA-------DDS 36
Score = 30.3 bits (67), Expect = 1.5
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 9/24 (37%)
Query: 667 IRKINSQL-----D----LSINST 681
++K+ + L D L+I +T
Sbjct: 22 LKKLQASLKLYADDSAPALAIKAT 45
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 32.8 bits (76), Expect = 0.51
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P+ C S L AV A+QSI G+SS + GG
Sbjct: 84 PAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGG 118
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 32.5 bits (75), Expect = 0.53
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 174 PSLLIDTACSSSLVAVHEALQSIKNGESSQALVGG 208
P ++ CSS L AV I+NG + G
Sbjct: 109 PLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACG 143
>4dv8_A Lethal factor; endopeptidase, zinc dependent, hydrolase; HET: 0LX;
1.63A {Bacillus anthracis} PDB: 1yqy_A* 2l0r_A
Length = 526
Score = 32.6 bits (73), Expect = 0.57
Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 10/280 (3%)
Query: 537 FYEKKIIPMQDKLD-SFNESKNKIDIATVINLAIKEKNFKKIAILWQSGININWSLIDKK 595
F +K I ++D L E N+I + + L+ KEK F K L +IN L D
Sbjct: 87 FLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTG 146
Query: 596 NIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQIKSEQFDDDAIFID 655
+ S + Y N++ + S + + N + I + A +D
Sbjct: 147 GLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVD 206
Query: 656 MGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISKKLK-SKNLSINND 714
++ I + SI+S Y +N+ ++ +++ S +
Sbjct: 207 STDNTKINRGIFNEFKKNFKYSISSN--YMIVDINERPALDNERLKWRIQLSPDTRAGYL 264
Query: 715 DFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDFEISK 774
+ K I +I ++ + +II + ++ + D I I++
Sbjct: 265 ENGKLILQRNI--GLEIKDVQIIKQ----SEKEYIRIDAKVVPKSKIDTKIQEAQLNINQ 318
Query: 775 YIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYD 814
+ + R + + S I++++ +
Sbjct: 319 EWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKN 358
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 32.2 bits (72), Expect = 0.82
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 667 IRKINSQ-----LDLSINSTKIYDYPTLNKFFKFIMSQISKKLKSKNLSINNDD------ 715
+R++ Q LD+S N+ + L+ FI + + + N I +
Sbjct: 613 VREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD 672
Query: 716 ------------FDKSINNDDIDKSIKK 731
F + D ++ K
Sbjct: 673 RATKLEQEFTECFSAIVEGDSFEEIYHK 700
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 31.6 bits (72), Expect = 0.96
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 648 DDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTL 689
D D F +G ++A+ +++ Q+ + ++ T+
Sbjct: 32 DAD--FFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTV 71
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 31.8 bits (73), Expect = 1.1
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 648 DDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTL 689
DD F +G ++ A+T +I +L + + +++ PT+
Sbjct: 993 HDD--FFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTI 1032
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 612 WLPKNNLNKKISNSDDTQISNSDDTQIKLQIKSEQFDDDAIF 653
W KN KI SD +D +L I+ +D A
Sbjct: 39 WY-KNG--VKIERSDRIYWYWPEDNVCELVIRDVTGEDSASI 77
>3sqi_A KLLA0E03807P; DNA recombinase, DNA binding, DNA binding protein-DNA
C; HET: DNA; 2.82A {Kluyveromyces lactis} PDB: 3t79_A*
Length = 534
Score = 31.0 bits (69), Expect = 1.9
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 469 LIFVLSAKTKSQLLIYVKKYIEWLNNKESLNISLRDLTLQLQ 510
L+ L +T KY EWL L + L L +
Sbjct: 7 LLKELPTRTAHLYRSIWHKYTEWLKTMPDLTGADLKLFLSQK 48
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, putative
glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus
prevotii}
Length = 276
Score = 30.2 bits (68), Expect = 2.8
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 727 KSIKKNNSK------IINDTISYDNSKKLKSKNLSINNDDFDKSINNDDFEISKYIREIP 780
SI NN +I+ IS D K L + + +D F +K P
Sbjct: 25 TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVTDRYP 84
Query: 781 KSNNLKNFANNLL 793
K + A L
Sbjct: 85 KEMYYRLLAGEFL 97
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR
{Pseudomonas aeruginosa}
Length = 103
Score = 28.2 bits (62), Expect = 3.5
Identities = 11/87 (12%), Positives = 34/87 (39%)
Query: 615 KNNLNKKISNSDDTQISNSDDTQIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQL 674
+ NL + +D + + + E+ D+ D+ DS++ K+ +
Sbjct: 14 RENLYFQGHMPNDMEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEF 73
Query: 675 DLSINSTKIYDYPTLNKFFKFIMSQIS 701
++ ++ T+++ F+ + +
Sbjct: 74 GVTGVDDELDLLETVDELFQLVEKHRA 100
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 30.3 bits (67), Expect = 3.5
Identities = 48/291 (16%), Positives = 101/291 (34%), Gaps = 10/291 (3%)
Query: 524 IFNRDDLLSQLNFFYEKKIIPMQDKLD-SFNESKNKIDIATVINLAIKEKNFKKIAILWQ 582
I + D L ++ F +K I ++D L E N+I + + L+ KEK F K L
Sbjct: 324 IDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDI 383
Query: 583 SGININWSLIDKKNIRISLPTYPFSKYYYWLPKNNLNKKISNSDDTQISNSDDTQIKLQI 642
+IN L D + S + Y N++ + S + + N + I
Sbjct: 384 QPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNI 443
Query: 643 KSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQISK 702
+ A +D ++ I + SI+S Y +N+ ++
Sbjct: 444 NNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSN--YMIVDINERPALDNERLKW 501
Query: 703 KLK-SKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDF 761
+++ S + + K I +I ++ + +II + ++ +
Sbjct: 502 RIQLSPDTRAGYLENGKLILQRNI--GLEIKDVQIIKQ----SEKEYIRIDAKVVPKSKI 555
Query: 762 DKSINNDDFEISKYIREIPKSNNLKNFANNLLIGRNCVSKIASTRWIIDDF 812
D I I++ + + R + + S I++++
Sbjct: 556 DTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEW 606
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 29.4 bits (67), Expect = 5.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 182 CSSSLVAVHEALQSIKNGESSQALVGG 208
C+S + A+ A QS+ G + GG
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGG 120
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu
genomics, PSI-2, protein structure initiative; HET: MSE;
2.52A {Vibrio parahaemolyticus}
Length = 150
Score = 28.2 bits (63), Expect = 5.6
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 317 HGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNFYEKCG 354
G L + ++ + + I + +++ + G
Sbjct: 83 GNRGLLLLNYMKHRSKSENINQIFVLTTHSLHWFREQG 120
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 29.1 bits (66), Expect = 5.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 262 NDH-----DNIYAIIKGSAITHNGQSNGLTAP 288
+D+ ++YAI G ++G G
Sbjct: 253 DDNFRTSAKDVYAI--GDCAEYSGIIAGTAKA 282
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 29.0 bits (65), Expect = 6.0
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 23/91 (25%)
Query: 664 VTWIRKINSQ-----LDLSINSTKIYDYPTLNKFFKFIMSQISKKLKSKNLSINNDD--- 715
V +R++ + LD+S N+ K L FI + + N + +
Sbjct: 179 VASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKK 238
Query: 716 ---------------FDKSINNDDIDKSIKK 731
F + D I++ K
Sbjct: 239 TYERAIKMEQEFGEYFTGVVQGDTIEEIYSK 269
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro
structure initiative, PSI; 2.00A {Thermotoga maritima}
SCOP: a.28.1.1
Length = 100
Score = 27.0 bits (60), Expect = 7.9
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 639 KLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698
K+ E D++ F ++G DSI + + + L I +I + ++
Sbjct: 29 KMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIK 88
Query: 699 QISKK 703
++ +
Sbjct: 89 KLEEI 93
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural
genomics consortiu retropepsin-like domain, protein
turnover, hydrolase; 1.70A {Homo sapiens}
Length = 148
Score = 27.8 bits (61), Expect = 8.5
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 636 TQIKLQIKSEQFDDDAIFIDM-GLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFF 693
++QI+ + ++ +D ++ + +R+ +DL N I T F
Sbjct: 84 HLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFL 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,393,545
Number of extensions: 753125
Number of successful extensions: 2105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1999
Number of HSP's successfully gapped: 153
Length of query: 831
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 729
Effective length of database: 3,853,851
Effective search space: 2809457379
Effective search space used: 2809457379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)