RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11395
(831 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 216 bits (551), Expect = 2e-65
Identities = 57/262 (21%), Positives = 92/262 (35%), Gaps = 27/262 (10%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + + GL P G F K G S + + +R+ D I
Sbjct: 2 RRVVVTGLGALTPIG-VGQEAFHKAQLAGKSGVRPI--TRF------DASALPVRIAA-- 50
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
E P + E +D + L + +EDAG L G +G
Sbjct: 51 -----EVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTG 105
Query: 133 GSDYTRLLSDYIKIP------VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
+ ++ + + I+ Y FTGPS + TAC++
Sbjct: 106 IGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGA 165
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241
A+ AL+ I+ GE+ L GG + P A+ LS + + F + D
Sbjct: 166 DALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRD 225
Query: 242 GYVRGEGAVMLMLKPLSVALND 263
G+V GEGA +L+L+ A
Sbjct: 226 GFVMGEGAGVLVLEAYEHAKKR 247
Score = 30.4 bits (68), Expect = 0.64
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYD 814
P + F L G++ V I TR+
Sbjct: 14 PIGVGQEAFHKAQLAGKSGVRPI--TRFDASALPV 46
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 193 bits (490), Expect = 8e-57
Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 26/262 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + + GL P G NT+ WK L G S I + + F
Sbjct: 2 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLI--DHFDTS--------AYATKFAG 50
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+KD C D K E MD + + + ++D+G + ++ + + G IG+
Sbjct: 51 LVKDFNCEDIISRK----EQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSG 106
Query: 133 GSDYT------RLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
L + ++ + ++A ++ Y GPS+ I TA +S +
Sbjct: 107 IGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGV 166
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241
+ A + I G++ + GG P + A LS + +DK D
Sbjct: 167 HNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERD 226
Query: 242 GYVRGEGAVMLMLKPLSVALND 263
G+V G+GA ML+L+ A
Sbjct: 227 GFVLGDGAGMLVLEEYEHAKKR 248
Score = 30.6 bits (68), Expect = 0.61
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYD 814
P N +++ LL G++ +S I + +
Sbjct: 14 PVGNTVESTWKALLAGQSGISLI--DHFDTSAYAT 46
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 172 bits (436), Expect = 3e-49
Identities = 56/262 (21%), Positives = 98/262 (37%), Gaps = 26/262 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K + + GL P G NTL +W+ L +G + I + +R+ +
Sbjct: 2 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPI--TRFDAS------------DQAC 46
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ EA+ MD + S + I DA ++L+ GV IG
Sbjct: 47 RFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTG 106
Query: 133 GSDYTRLLSDYIKIP------VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
L + + + + + GP+ TAC++
Sbjct: 107 IGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGS 166
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR-----DGICKTFDKNAD 241
A+ +A + ++NG + + GG + P + + A LS + FDK+ D
Sbjct: 167 NAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRD 226
Query: 242 GYVRGEGAVMLMLKPLSVALND 263
G+V GEG+ +L+L+ L AL
Sbjct: 227 GFVMGEGSGILILEELESALAR 248
Score = 32.6 bits (73), Expect = 0.16
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFY 813
P N L+++ L+ GRN + I TR+ D
Sbjct: 14 PIGNTLQDYWQGLMEGRNGIGPI--TRFDASDQA 45
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 168 bits (426), Expect = 8e-48
Identities = 53/261 (20%), Positives = 87/261 (33%), Gaps = 25/261 (9%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + G P G NT +FW L G I + + +F
Sbjct: 9 NRVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHS--------------DFDV 53
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ D L + + + A D L+ GV + +
Sbjct: 54 HNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASG 113
Query: 133 GSDYTRLLSDYIKI------PVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSL 186
+ +++ V + + ++ + G I+TACSSS
Sbjct: 114 IGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSN 173
Query: 187 VAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR----DGICKTFDKNADG 242
A+ +A +SIK G LVGG + P + LS FDK+ +G
Sbjct: 174 DAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNG 233
Query: 243 YVRGEGAVMLMLKPLSVALND 263
+V GEG+ ML+L+ L A
Sbjct: 234 FVMGEGSGMLVLESLEHAEKR 254
Score = 29.9 bits (66), Expect = 1.2
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRY 817
P N + F N+L G+ + I T++ DF
Sbjct: 21 PIGNTPEEFWNSLATGKIGIGGI--TKFDHSDFDVHNA 56
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 165 bits (418), Expect = 2e-47
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 21/217 (9%)
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDNIYAIIKGSAITHNGQSNGLTAPN 289
+ + FD DG+V EGA M +L+ AL I+A I G A N +
Sbjct: 4 EHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKAD 63
Query: 290 PIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKNF 349
+ + ++ A +ES D + YI HG+GT+ D E K A
Sbjct: 64 GREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALG----------EH 113
Query: 350 YEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYII 409
+ + S+K+ +GH A G I +L L++ +P + N + LD Y+
Sbjct: 114 ARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLD----YVP 169
Query: 410 DHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
++ KLR G GG + +VL +
Sbjct: 170 LEARER-------KLRSVLTVGSGFGGFQSAMVLRDA 199
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 153 bits (387), Expect = 2e-42
Identities = 48/273 (17%), Positives = 99/273 (36%), Gaps = 21/273 (7%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGIN--- 69
+ + + GL P G + W+ L G I L D + K +
Sbjct: 1 RRVVVTGLGMVTPLG-RGVETTWRRLIDGECGIRGLTLDDL-KMKSFDEETKLYTFDQLS 58
Query: 70 -----FGAFLKDIECFDAPFFKISPIEAESMDPQQRI----LLELSWKTIEDAGYDSSKL 120
F + + FD + S A + L + W E+ + + +
Sbjct: 59 SKVAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGV 118
Query: 121 SGSNTGVFIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
S G+ + +L+ + ++ + + + +S Y F GP+ T
Sbjct: 119 SI-GGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVT 177
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICK 234
AC++ ++ +A + I+ G++ + GG + + + ++ LS +
Sbjct: 178 ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237
Query: 235 TFDKNADGYVRGEGAVMLMLKPLSVALNDHDNI 267
FD + DG+V GEG+ +++L+ A I
Sbjct: 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
Score = 34.2 bits (77), Expect = 0.053
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYD 814
P ++ L+ G + + + F +
Sbjct: 13 PLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDE 47
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 136 bits (343), Expect = 8e-38
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 20/179 (11%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
IYA + G ++ + N + + A ++ I+ +GY+ HGT T GD
Sbjct: 2 IYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E Q +K F + + S K+ GHL A+G + IL L+++ +
Sbjct: 62 AEAQAVKTIFG----------EAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAV 111
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445
P ++N N D + + + + +SFG GGTN ++ +
Sbjct: 112 PPTINLDN----------PDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 160
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 130 bits (326), Expect = 2e-34
Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 15/261 (5%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
K I GL G N + L++G S I E + + + K G
Sbjct: 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQELKD-SGMRSHVWGNVKLDTTGL 59
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ + F + + + E L +++ G + GS GA
Sbjct: 60 IDRKVVRFMSDASIYAFLSME-QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 133 GSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVAVHEA 192
R L V + + ++ ++ + G + I +AC++S + A
Sbjct: 119 AMRGPRGLK-----AVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 173
Query: 193 LQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLSR------DGICKTFDKNADGYVRG 246
++ I+ G+ GG + + G LS + +T+D + DG+V
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 247 EGAVMLMLKPLSVALNDHDNI 267
G M++++ L AL +I
Sbjct: 233 GGGGMVVVEELEHALARGAHI 253
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 124 bits (311), Expect = 2e-33
Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 21/180 (11%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
IY + G A+T + P+ + + A +S + + YI HGT T D
Sbjct: 2 IYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E + +K A N + S K+ GHL SG + ++ + K+
Sbjct: 62 TETRAIKQALG----------NHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKV 111
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
P ++N N + LD + +A +SFG GG N + +Y
Sbjct: 112 PPTINLENPDPECDLD-----------YVPGQSRALIVDVALSNSFGFGGHNVTLAFKKY 160
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 125 bits (313), Expect = 2e-33
Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 27/218 (12%)
Query: 230 DGICKTFDKNADGYVRGEGAVMLMLKPLSVALNDHDN-IYAIIKGSAITHNGQSNGLTAP 288
D FD+ A GYV GEG +L+L+ + A + Y + G A T + +
Sbjct: 3 DRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFD---PAPGSG 59
Query: 289 NPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPIEIQGLKNAFHSIITYKKNIKN 348
P ++ A N++ + + G G D E + + F
Sbjct: 60 RPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFG----------- 108
Query: 349 FYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLPASLNFYNLNKNIKLDDSHLYI 408
E + KT G L + G ++ ++ L+ + + ++ + +D +
Sbjct: 109 -REGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID----LV 163
Query: 409 IDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
+ + R A V + G G N+ VL +
Sbjct: 164 LGEPRST-------APRTALVLARGRWGFNSAAVLRRF 194
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 121 bits (305), Expect = 1e-32
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 268 YAIIKGSAITHNGQSNGLTAPNPIQQSYLL--QKAWNESNIDVRSLGYIECHGTGTKLGD 325
YA + G ++ + + +T P + +L +A +S + + Y+ H T T +GD
Sbjct: 1 YAELCGYGMSGDA--HHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGD 58
Query: 326 PIEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKK 385
+E + +K F S K GHL A+G + IL + +
Sbjct: 59 AVEARAIKTVFS--------EHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGV 110
Query: 386 LPASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
P +LN N + L + +R A +SFG GGTNA ++ +
Sbjct: 111 APMTLNVKNPDPIFDKRFMPLTTSK----------KMLVRTAMSNSFGFGGTNASLLFA 159
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 120 bits (302), Expect = 2e-32
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
IYA + G + + P + + +A ++ I +GYI HGT T +GD
Sbjct: 2 IYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E+ +K F + ++ + S K+ +GHL A+G + + L + +
Sbjct: 62 AEVLAIKRVFG----------DHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVI 111
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLS 444
P ++N + + + L +P+ E K+ A +SF GG NA +
Sbjct: 112 PPTINLEDPDPEL-----------DLDFVPEPR-EAKVDYALSNSFAFGGHNAVLAFK 157
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 113 bits (283), Expect = 7e-30
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 28/178 (15%)
Query: 268 YAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDPI 327
YA I G T +G + AP+ ++ A + + + Y+ HGT T +GD
Sbjct: 1 YAEIVGYGATSDGAD--MVAPSGEGAVRCMKMAMHGVDTPID---YLNSHGTSTPVGDVK 55
Query: 328 EIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKLP 387
E+ ++ F + + K GH A+G+ + +L L++ +
Sbjct: 56 ELAAIREVFGDK------------SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIA 103
Query: 388 ASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSE 445
S+N L++ + L I+ D +L +SFG GGTNA +V+ +
Sbjct: 104 PSINIEELDEQA----AGLNIVTETTDR-------ELTTVMSNSFGFGGTNATLVMRK 150
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 108 bits (270), Expect = 2e-27
Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 27/228 (11%)
Query: 13 KDIAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGA 72
+ + I G+ P G N +FW++L G + ++ + +
Sbjct: 1 RRVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISFFDPSP--------------YRS 45
Query: 73 FLKDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGAS 132
+ FD P E + MD + + + + +G D L + GV +G++
Sbjct: 46 QVAAEADFDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 105
Query: 133 GSDYTRLLSDYIKIP------------VNAHHCIGNSMAVLANRISYFYNFTGPSLLIDT 180
+ T L +Y+ + ++ H +V+ +++ GP ++ T
Sbjct: 106 VAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVST 165
Query: 181 ACSSSLVAVHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
C+S L +V A+++I+ G + G + + P + +
Sbjct: 166 GCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATT 213
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 103 bits (258), Expect = 2e-26
Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 24/180 (13%)
Query: 267 IYAIIKGSAITHNGQSNGLTAPNPIQQSYLLQKAWNESNIDVRSLGYIECHGTGTKLGDP 326
I A + G T + P ++ A E+ I + Y+ HGT T +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 327 IEIQGLKNAFHSIITYKKNIKNFYEKCGLGSVKTNLGHLEAASGITGILKIILCLKNKKL 386
E + + S K+ GHL A+G + I +++ +
Sbjct: 62 GESGAIVAVLGKEVPV-------------SSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 108
Query: 387 PASLNFYNLNKNIKLDDSHLYIIDHLQDWVKPKYENKLRIAGVSSFGSGGTNAHVVLSEY 446
P + ++ I+ + + + ++ A ++FG GG NA + +
Sbjct: 109 PMTAGTSEVSDYIEAN----VVYGQGLEK-------EIPYAISNTFGFGGHNAVLAFKRW 157
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 98.2 bits (243), Expect = 8e-24
Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 22/220 (10%)
Query: 15 IAIIGLACYLPKGINTLSKFWKILKKGSSVIEELNESRWIWPLEIDIKNKHKGINFGAFL 74
+ I G+ P G L+ +W + G + + +R+ + A L
Sbjct: 2 VLITGVGVVAPNG-LGLAPYWSAVLDGRHGLGPV--TRFDVS------------RYPATL 46
Query: 75 KDIECFDAPFFKISPIEAESMDPQQRILLELSWKTIEDAGYDSSKLSGSNTGVFIGASGS 134
I DP R+ L + ++DA D L+ + GV +
Sbjct: 47 AGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACG 106
Query: 135 DYTRLLSDYIKIPVNAHH------CIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLVA 188
+ ++ K+ AV +IS + GPS + + L A
Sbjct: 107 GFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDA 166
Query: 189 VHEALQSIKNGESSQALVGGINLILHPSNTIAYYKAGMLS 228
+ A ++I+ G + GG++ L P ++ +G +S
Sbjct: 167 LGHARRTIRRGTPL-VVSGGVDSALDPWGWVSQIASGRIS 205
Score = 31.2 bits (69), Expect = 0.32
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 780 PKSNNLKNFANNLLIGRNCVSKIASTRWIIDDFYDFRYDN 819
P L + + +L GR+ + + TR+ + +
Sbjct: 12 PNGLGLAPYWSAVLDGRHGLGPV--TRFDVSRYPATLAGQ 49
>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier
protein, Fren ACP {Streptomyces roseofulvus [TaxId:
33902]}
Length = 82
Score = 46.5 bits (110), Expect = 3e-07
Identities = 7/54 (12%), Positives = 22/54 (40%)
Query: 648 DDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQIS 701
+ D F+D+G DS+ + + + +++ + T + + + +
Sbjct: 27 ELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPA 80
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier
protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId:
1902]}
Length = 86
Score = 44.2 bits (104), Expect = 2e-06
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
D F D+G DS+ + ++ S+ +SI T + I
Sbjct: 22 DGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGA 81
Query: 700 IS 701
++
Sbjct: 82 LA 83
>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl
carrier {Streptomyces rimosus [TaxId: 1927]}
Length = 95
Score = 41.9 bits (98), Expect = 2e-05
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 640 LQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMSQ 699
I +D F +G DS+ + + +I + + + T + +
Sbjct: 21 ESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS 80
Query: 700 IS 701
++
Sbjct: 81 LT 82
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester
domain {Bacillus brevis [TaxId: 1393]}
Length = 76
Score = 41.0 bits (96), Expect = 3e-05
Identities = 6/54 (11%), Positives = 22/54 (40%)
Query: 645 EQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIMS 698
F +G S+ A+ +++ + + + ++ PT+ +++ +
Sbjct: 23 SGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT 76
>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis
[TaxId: 1423]}
Length = 74
Score = 37.8 bits (88), Expect = 3e-04
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 639 KLQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
+L + +A F D+G D + V + ++ + D+ I+ T+ +I
Sbjct: 15 RLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 76
Score = 37.5 bits (87), Expect = 4e-04
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 637 QIKLQIKSEQFDDDAIFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNK 691
I + D+ D+GLDS++ V + + + DL + ++ TL K
Sbjct: 15 HILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVRQ-LTLRK 68
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus
casei [TaxId: 1582]}
Length = 80
Score = 36.8 bits (85), Expect = 8e-04
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 640 LQIKSEQFDDDAIFID-MGLDSIIAVTWIRKINSQLDLSINSTKIY--DYPTLNKFFKFI 696
+ + D + LDS+ V + ++ SQ + ++ ++ T NK +
Sbjct: 17 TGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKV 76
>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 115
Score = 36.7 bits (84), Expect = 0.002
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 639 KLQIKSEQFDDDA-IFIDMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFI 696
I+ + + D+ +DS+ V + + + I + T+ +I
Sbjct: 19 VTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYI 77
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 235
Score = 37.9 bits (87), Expect = 0.003
Identities = 32/229 (13%), Positives = 61/229 (26%), Gaps = 41/229 (17%)
Query: 16 AIIGLACYLPKGINTLSKFWKILKK--GSSVIEELNESRWIWPLEIDIKNKHKGINFGAF 73
I+ + P S + K S EL E + IK ++ +
Sbjct: 18 TILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRY------MY 71
Query: 74 LKDIECFDAPFF--KISPIEAESMDPQQRILLEL----SWKTIEDAGYDSSKLSGSNTGV 127
L + + P ++P D + L + K I++ G SK+
Sbjct: 72 LTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKI-----TH 126
Query: 128 FIGASGSDYTRLLSDYIKIPVNAHHCIGNSMAVLANRISYFYNFTGPSLLIDTACSSSLV 187
I + S +DY + + C +
Sbjct: 127 LIVCTTSGVDMPGADYQ--LTKLLGLRPYVKRYM---------------MYQQGCFAGGT 169
Query: 188 AVHEALQSIKNGESSQALVGGINL---ILHPSN--TIAYYKAGMLSRDG 231
+ A +N + ++ LV + + + L DG
Sbjct: 170 VLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli
[TaxId: 562]}
Length = 77
Score = 30.1 bits (68), Expect = 0.18
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 639 KLQIKSEQFDDDAIFI-DMGLDSIIAVTWIRKINSQLDLSINSTKIYDYPTLNKFFKFIM 697
+L +K E+ ++A F+ D+G DS+ V + + + D I + T+ +I
Sbjct: 14 QLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYIN 73
Query: 698 SQIS 701
+
Sbjct: 74 GHQA 77
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 28.7 bits (63), Expect = 4.5
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 685 DYPTLNKFFKFIMSQISKKLKSKNLSI------NNDDFDKSINNDDIDKSIKKNNSKIIN 738
D + F + + + ++ + DK + + + IK+ +
Sbjct: 1165 DEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLF 1224
Query: 739 DTISYDNSKKLKSKNLSINNDDFDKSINNDDFEISKYIRE 778
S DN +KL + + D ++ + K I
Sbjct: 1225 VIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIEN 1264
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
{Helicobacter pylori [TaxId: 210]}
Length = 221
Score = 26.8 bits (59), Expect = 8.3
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 656 MGLDSIIAVTWIRKINSQLDLSINSTKIYDYPT----------LNKFFKFIMSQISKKLK 705
+ + + A+T+ K N+ L+ +++ I++Y LN+ + +M + +L
Sbjct: 144 VEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELT 203
Query: 706 SKNLSINNDDFDK 718
+N+ + D+
Sbjct: 204 KENIDKYREAIDR 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,106,225
Number of extensions: 150180
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 59
Length of query: 831
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 738
Effective length of database: 1,130,706
Effective search space: 834461028
Effective search space used: 834461028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)