RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11396
(829 letters)
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 638 bits (1647), Expect = 0.0
Identities = 212/423 (50%), Positives = 285/423 (67%), Gaps = 3/423 (0%)
Query: 115 DDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKK 174
+ IAI+G++ +FP A + +FW NLL GR+ +S+IP RW D +Y D GKT ++
Sbjct: 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYY-PDPGKPGKTYTRR 59
Query: 175 MGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVG 234
G L+D++ FD FF ISP EAE MDPQQRL L+ W +EDAGY+P SL+GS GVFVG
Sbjct: 60 GGFLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSPESLAGSRTGVFVG 119
Query: 235 CAVSDYNKLIT-DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAH 293
+ SDY +L+ DP +AYA G S + L R+SYF +L+GP L +DTACSSSLVA+
Sbjct: 120 ASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSSSLVALHL 179
Query: 294 ACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGV 353
AC SL G +AL GGV +I +PD+ + SK+GMLSPDG C FD A+G+V GEGVGV
Sbjct: 180 ACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGV 239
Query: 354 LMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDI 413
++LK+L DA +DGD IY +I+G VNQDG+T GITAP+ ++Q L + Y + ++P+DI
Sbjct: 240 VVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDI 299
Query: 414 QLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKII 473
+EAHGTGT LGDPIE EAL + F +GSVKSNIGH AAG+ G+IK++
Sbjct: 300 DYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVV 359
Query: 474 LSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAH 533
L+L+H V+PP +++ N I E SP + T+ + W R A ++SFGF GTNAH
Sbjct: 360 LALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWP-APAGPRRAGVSSFGFGGTNAH 418
Query: 534 IVL 536
++L
Sbjct: 419 VIL 421
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 604 bits (1560), Expect = 0.0
Identities = 211/471 (44%), Positives = 297/471 (63%), Gaps = 8/471 (1%)
Query: 114 NDDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICK 173
+ IAIIG++ +FP A++ ++FW+ L GR+ ++++P+ RW +D +YD D GK+ +
Sbjct: 3 IEPIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSR 62
Query: 174 KMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFV 233
G L+D++ FD LFF ISP EAE MDPQQRL L+ W +EDAG P SL GS GVF
Sbjct: 63 WGGFLDDVDDFDALFFGISPREAEAMDPQQRLLLEVAWEALEDAGIYPDSLRGSATGVFA 122
Query: 234 GCAVSDY-NKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIA 292
G +V+DY L+ D + YA+ G S S+ R+SY L L GP + +DTACSSSLVA+
Sbjct: 123 GASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSGPSVTVDTACSSSLVAVH 182
Query: 293 HACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVG 352
AC SL LG +ALAGGV ++ +P+ S GMLSPDG C +FD A+G+V GEG G
Sbjct: 183 LACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEGAG 242
Query: 353 VLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPND 412
V++LK+L DA++DGD IY +I+G VNQDG++NG+TAPN ++Q + + I+P
Sbjct: 243 VVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPAT 302
Query: 413 IQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKI 472
+Q +EAHGTGT LGDPIE AL + + + CA+GSVKSNIGH AAG+ G+IK
Sbjct: 303 VQYVEAHGTGTPLGDPIEANALGAVYGEGA-PAQPCAIGSVKSNIGHLEAAAGIAGLIKT 361
Query: 473 ILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNA 532
L+LKH +PPT++++ N I ++SPF + T+ W R A ++SFGF GTNA
Sbjct: 362 ALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPTEATPW-PTGGGPRRAGVSSFGFGGTNA 420
Query: 533 HIVLMEKIKNNENIDKFINNLPIFMVFPLSAKNLSQLLIYAKLICNYISKD 583
H++L E E+ + P + LSAK +L A + + +
Sbjct: 421 HVILEEAPPRAESTIP---SSPR--LLVLSAKTAERLAATAPRLADRLELQ 466
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 465 bits (1200), Expect = e-159
Identities = 164/422 (38%), Positives = 219/422 (51%), Gaps = 124/422 (29%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
IAI+G+S +FP A++ ++FW+ LL G
Sbjct: 1 IAIVGMSCRFPGADDPEEFWDLLLAG---------------------------------- 26
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
L+D+++FD FF ISP EAE MDPQQRL L+ W +EDAG +P SL GS GVFVG +
Sbjct: 27 -LDDVDLFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGVS 85
Query: 237 VSDYNKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACD 296
SDY + +DTACSSSLVA+ AC
Sbjct: 86 SSDY------------------------------------SVTVDTACSSSLVALHLACQ 109
Query: 297 SLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGVLML 356
SL G +ALAGGV +I +PD + +S++GMLSPDG C +FD A+G+V GEGVGV++L
Sbjct: 110 SLRSGECDMALAGGVNLILSPDTFVGLSRAGMLSPDGRCKTFDASADGYVRGEGVGVVVL 169
Query: 357 KKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLL 416
K+L DA +DGD I +I+G VNQDG++NGITAP+ +Q
Sbjct: 170 KRLSDALRDGDPILAVIRGSAVNQDGRSNGITAPSGPAQ--------------------- 208
Query: 417 EAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSL 476
+GSVKSNIGH AAGV G+IK++L+L
Sbjct: 209 -------------------------------LLIGSVKSNIGHLEAAAGVAGLIKVVLAL 237
Query: 477 KHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
KH V+PPT+++ N HI LE SP + T+ W + R A ++SFGF GTNAH++L
Sbjct: 238 KHGVIPPTLHFETPNPHIDLEESPLRVPTELTPWP-PPGRPRRAGVSSFGFGGTNAHVIL 296
Query: 537 ME 538
E
Sbjct: 297 EE 298
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 281 bits (721), Expect = 4e-89
Identities = 105/256 (41%), Positives = 139/256 (54%), Gaps = 20/256 (7%)
Query: 114 NDDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICK 173
+ +AI G+ +FP ++FW LL GR+ + + P+ Y + A G+
Sbjct: 1 AEPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADL---SGLYPPSRVA-GEI--- 53
Query: 174 KMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGS-LCGVF 232
FD FF ISP EAE MDPQQRL L+ W +EDAG +P SL GS GVF
Sbjct: 54 ------YGFDFDAAFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVF 107
Query: 233 VGCAVSDYNKLIT-----DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSS 287
VG DY +L P+ + Y S+ R+SY L L+GP + +DTACSSS
Sbjct: 108 VGSGSGDYAELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSS 167
Query: 288 LVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG-MLSPDGHCYSFDQRANGFV 346
LVA+ A S+ G +ALAGGV TP S +G +LSPDG C +FD A+GFV
Sbjct: 168 LVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFV 227
Query: 347 PGEGVGVLMLKKLKDA 362
GEGVG ++LK+L +A
Sbjct: 228 RGEGVGAVLLKELSEA 243
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 296 bits (760), Expect = 8e-85
Identities = 175/529 (33%), Positives = 273/529 (51%), Gaps = 44/529 (8%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
IAI+G++ F + + KFW+ + + ++ +PS W DD+YDSDK+ K+ CK+ G
Sbjct: 9 IAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGG 68
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAG----YN------------ 220
L +++ F+P+ F + P+ E D Q L L + DAG Y+
Sbjct: 69 FLPEVD-FNPMEFGLPPNILELTDISQLLSLVVAKEVLNDAGLPDGYDRDKIGITLGVGG 127
Query: 221 ----PFSLSGSLCG-----VFVGCAVSDYNKLITDPKMYNAY------ALMGESVSILPA 265
SL+ L VF V D + + K + Y + G +++
Sbjct: 128 GQKQSSSLNARLQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISG 187
Query: 266 RVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSK 325
R++ +L G +D AC+ SL AI A L+ G S++ + GGV N+P +++ SK
Sbjct: 188 RIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSK 247
Query: 326 SGMLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTN 385
+ + + FD + G + GEG+G++ LK+L+DA++DGD IY +IKG G + DGK
Sbjct: 248 TPAFTTNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFK 307
Query: 386 GITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHK 445
I AP + Q + + Y P+ L+EAHGTGT GD EF L F++ + K
Sbjct: 308 SIYAPRPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQK 367
Query: 446 NFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINT 505
ALGSVKS IGH+ + AG GMIK +L+L HKVLPPTIN + N + +ENSPF++NT
Sbjct: 368 QHIALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNT 427
Query: 506 KCKSWDIK-NKKKRMAAINSFGFSGTNAHIVLMEKIKNNENIDKF-INNLPIFMVFPLSA 563
+ + W + + R A I+SFGF GTN H+VL E ++ D++ + ++F +A
Sbjct: 428 ETRPWMQREDGTPRRAGISSFGFGGTNFHMVLEEYSPKHQRDDQYRQRAVAQTLLF--TA 485
Query: 564 KNLSQLLIYAKLICNYISKDLKNSTVVKGITDAFSYINSSVQYKVIIIT 612
N L+ + L KD KN K +++ +V+ + I
Sbjct: 486 ANEKALV--SSL------KDWKNKLSAKADDQPYAFNALAVENTLRTIA 526
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 265 bits (680), Expect = 5e-83
Identities = 99/223 (44%), Positives = 140/223 (62%), Gaps = 4/223 (1%)
Query: 585 KNS---TVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEK 641
KN+ + + +AF I +YKV+I+TGY NYFA GGT+EGLL +Q G FT+
Sbjct: 26 KNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEAN 85
Query: 642 SYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLI 701
Y + L C IPVIAAMQGHAIG G +GL+ D + S ESVY + +M+YGFTPG G+T I
Sbjct: 86 LYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAI 145
Query: 702 FPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELE 761
P++ G L +E+L TA ++G ELK+RG+ PVLPR +VL +L+LA+ L+ + L
Sbjct: 146 LPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV 205
Query: 762 LQKKYYSHSLQKKLSTIFLHELTMHDYTFVNNPSVITNIERYF 804
L K + +++L + E+ MH+ TF + P V IE +
Sbjct: 206 LLKDHLVADRRRRLPEVIEQEVAMHEKTF-HQPEVKRRIESLY 247
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 207 bits (527), Expect = 3e-60
Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 19/338 (5%)
Query: 202 QQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAVSDYNKLITDP---KMYNAYALMGE 258
L + I DAG + + GV VG + + Y +
Sbjct: 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKA 70
Query: 259 SVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPD 318
+++ L + GP + AC+ SL A++ A D++ G I LAGG + P
Sbjct: 71 MFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPM 130
Query: 319 IHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGV 378
+ + +P+ +FD A+GFV G+G G L++++L+ A G IY I G
Sbjct: 131 DCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAA 190
Query: 379 NQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESF 438
DG G AP+ + R + + DI L AHGTGT +GD E + L F
Sbjct: 191 TIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250
Query: 439 NKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLEN 498
S A+ + K+ G+ ++AA V+ + + +L L+H +PP+I+ L+
Sbjct: 251 GDKSP-----AVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELD------- 298
Query: 499 SPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
+N ++ ++ R A +N FG GTNA +VL
Sbjct: 299 -EAGLNIVTETTP---RELRTALLNGFGLGGTNATLVL 332
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 207 bits (530), Expect = 1e-59
Identities = 128/429 (29%), Positives = 184/429 (42%), Gaps = 60/429 (13%)
Query: 130 NNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDPLFF 189
N V++FW LL GR+ + I TR+ F I G + D FDP +
Sbjct: 16 NGVEEFWEALLAGRSGIRPI--TRFDASGFPSR----IA-------GEVPD---FDPEDY 59
Query: 190 NISPSEAEYMDPQQRLFLQNCWTC----IEDAGYNPFSLSGSLCGVFVGCAVSDYNKLIT 245
+ E MD F Q + DAG +P L GV +G + L T
Sbjct: 60 -LDRKELRRMDR----FAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGG---LAT 111
Query: 246 DPKMYNAYALMGES-----------VSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
+ Y A G ++ +V+ L L+GP + TAC+S AI A
Sbjct: 112 IEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDA 171
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS-----PDGHCYSFDQRANGFVPGE 349
+ LG + + +AGG + TP + LS P+ FD+ +GFV GE
Sbjct: 172 ARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGE 231
Query: 350 GVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIRLQTKIYKKFN 407
G GVL+L+ L+ AK G IY I G+G + D ITAP + + R
Sbjct: 232 GAGVLVLESLEHAKARGAKIYAEILGYGASSDA--YHITAPDPDGEGAARAMRAALADAG 289
Query: 408 INPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVI 467
++P DI + AHGT T L D E +A+ F + + + S KS GH AAG +
Sbjct: 290 LSPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAKK---VPVSSTKSMTGHLLGAAGAV 346
Query: 468 GMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGF 527
I +L+L+ VLPPTIN + L+ ++ + + I+ A NSFGF
Sbjct: 347 EAIATLLALRDGVLPPTINLEEPDPECDLD----YVPNEAREAPIRY-----ALSNSFGF 397
Query: 528 SGTNAHIVL 536
G NA +V
Sbjct: 398 GGHNASLVF 406
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 195 bits (499), Expect = 3e-55
Identities = 115/441 (26%), Positives = 183/441 (41%), Gaps = 50/441 (11%)
Query: 113 NNDDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTIC 172
+ + I G+ N V++ W LL G++ + I TR+
Sbjct: 1 SMRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPI--TRFDASGLG-----------V 47
Query: 173 KKMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVF 232
K G ++D++ I+ E +MD +L + +EDAG + GV
Sbjct: 48 KIAGEIKDLDDQ------IAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVDMRVGVA 101
Query: 233 VGCAVSDYNKLITD---------PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTA 283
+G + + D K + + + ++ V+ L+GP TA
Sbjct: 102 IGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTA 161
Query: 284 CSSSLVAIAHACDSLILGNSKIALAGGVY-IINTPDIH----IKMSKSGMLSPDGHCYSF 338
C++ AI A + LG + + +AGG I I ++ + P+ F
Sbjct: 162 CATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPF 221
Query: 339 DQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQI 396
D+ +GFV GEG G L+L++L+ A G IY I G+G D ITAP + + I
Sbjct: 222 DKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDA--YHITAPAPDGEGAI 279
Query: 397 RLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSN 456
R + P DI + AHGT T D E A+ + F H + S KS
Sbjct: 280 RAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAI-KRV--FGEHAKSLPVSSTKSL 336
Query: 457 IGHSATAAGVIGMIKIILSLKHKVLPPTINY-NILNEHIKLENSPFFINTKCKSWDIKNK 515
GH+ AAG + I +L+L+ ++PPTIN N E L+ + + ++ ++
Sbjct: 337 TGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAADLD----VVPNEARTGAVRA- 391
Query: 516 KKRMAAINSFGFSGTNAHIVL 536
A NSFGF GTNA +V
Sbjct: 392 ----ALSNSFGFGGTNASLVF 408
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 174 bits (444), Expect = 8e-48
Identities = 108/448 (24%), Positives = 174/448 (38%), Gaps = 71/448 (15%)
Query: 117 IAIIGISGQFPKANN---VKKFWNNLLIGRNCVSKI-----PSTRWI---IDDFYDSDKN 165
+ I GI P V++FW L GR+ ++ + R + I +
Sbjct: 3 VVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKSRFDRGVAGQIPTGDIPGWD 62
Query: 166 AIGKTICKKMGSLEDIEIFDP-LFFNISP-SEAEYMDPQQRLFLQNCWTCIEDAGYN-PF 222
A K+ G I D + EA + DAG P+
Sbjct: 63 A------KRTG------IVDRTTLLALVATEEA-----------------LADAGITDPY 93
Query: 223 SLSGSLCGVFVGCAVSDYNKLITDPKMYNAYALMGESVSIL--------PARVS-YFLNL 273
+ S GV VG + L + VS V+ L+
Sbjct: 94 EVHPSEVGVVVGSGMGGLRFL--RRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLSS 151
Query: 274 QGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS--- 330
GP AC+++L A+ A +++ G + I + GGV + + G LS
Sbjct: 152 HGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDP-LEEGLSGFANMGALSTAE 210
Query: 331 --PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGIT 388
P+ FD+ +GFV EG GVL+L++ + A G IY + G DG +
Sbjct: 211 EEPEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVP 270
Query: 389 APNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFC 448
A ++T + K ++ +D+ ++ AHGT T D E A+ E
Sbjct: 271 AGGKGIARAIRTAL-AKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAG---ALGAPL 326
Query: 449 ALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCK 508
+ + K+ GHS AAG + +I + SL+H ++PPT N + + + + +
Sbjct: 327 PVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTAN----LDDVDPDVEHLSVVGLSR 382
Query: 509 SWDIKNKKKRMAAINSFGFSGTNAHIVL 536
N K R A +N+FGF G+NA +VL
Sbjct: 383 DL---NLKVRAALVNAFGFGGSNAALVL 407
>gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 119
Score = 164 bits (418), Expect = 1e-47
Identities = 59/119 (49%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 370 YCIIKGWGVNQDG-KTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDP 428
Y +I+G VNQDG NG+TAPN +Q R ++P D+ +EAHGTGT LGDP
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 429 IEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINY 487
IE EAL F +GSVKSNIGH AAGV G+IK +L+L+H V+PPT+N
Sbjct: 61 IEAEALKAVFGP-GRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNL 118
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 164 bits (417), Expect = 4e-44
Identities = 127/431 (29%), Positives = 195/431 (45%), Gaps = 58/431 (13%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N V++FW NLL G++ + I TR+ D K G ++D FDP
Sbjct: 13 PLGNGVEEFWENLLAGKSGIGPI--TRFDASDLP-----------VKIAGEVKD---FDP 56
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAV-------SD 239
+ I EA MD + L +ED+G + GV +G +
Sbjct: 57 EDY-IDKKEARRMDRFIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQ 115
Query: 240 YNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSL 298
+ L+ P+ + + + +++ ++S +GP A+ TAC++ AI A +
Sbjct: 116 HIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLI 175
Query: 299 ILGNSKIALAGGVYIINTPDIHIKMSKSGM-----LS-----PDGHCYSFDQRANGFVPG 348
G++ + +AGG TP + +G LS P+ FD+ +GFV G
Sbjct: 176 QRGDADVMIAGGAEAAITP-----LGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMG 230
Query: 349 EGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIRLQTKIYKKF 406
EG GVL+L++L+ AK G IY I G+G++ D ITAP + R K
Sbjct: 231 EGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDA--YHITAPAPEGEGAARAMRAALKDA 288
Query: 407 NINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGV 466
INP D+ + AHGT T LGD E +A+ F +Y A+ S KS GH AAG
Sbjct: 289 GINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHAYK---LAVSSTKSMTGHLLGAAGA 345
Query: 467 IGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAI-NSF 525
I I +L+L+ ++PPTIN + + L+ ++ + + I A+ NSF
Sbjct: 346 IEAIFTVLALRDGIVPPTINLDNPDPECDLD----YVPNEAREAKID------YALSNSF 395
Query: 526 GFSGTNAHIVL 536
GF G NA +V
Sbjct: 396 GFGGHNASLVF 406
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 162 bits (412), Expect = 3e-43
Identities = 127/443 (28%), Positives = 190/443 (42%), Gaps = 82/443 (18%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N+V+ W NLL G++ + I F SD K G ++D F+P
Sbjct: 14 PLGNDVESTWKNLLAGKSGIGPI-------THFDTSD------LAVKIAGEVKD---FNP 57
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAVSDYNKLITD 246
+ +S EA MD + + +EDAG + GV +G +
Sbjct: 58 DDY-MSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEENADRIGVIIGSGIGGL------ 110
Query: 247 PKMYNAYALMGESVSILPARVSYF-----------------LNLQGPCLAIDTACSSSLV 289
+ + + E P RVS F +GP +I TAC++
Sbjct: 111 ETIEEQHITLLEKG---PRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAH 167
Query: 290 AIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGM-----LS-----PDGHCYSFD 339
AI A + G++ + +AGG TP + +G LS P+ FD
Sbjct: 168 AIGDAARLIAYGDADVMVAGGAEAAITP-----LGIAGFAAARALSTRNDDPERASRPFD 222
Query: 340 QRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQ--IR 397
+ +GFV GEG G+L+L++L+ AK G IY + G+G+ D +TAP + R
Sbjct: 223 KDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYH--MTAPAPDGEGAAR 280
Query: 398 LQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNI 457
K INP DI + AHGT T GD E +A+ F + +Y A+ S KS
Sbjct: 281 AMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYK---VAVSSTKSMT 337
Query: 458 GHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKK 517
GH AAG + I +L+++ +V+PPTIN + +E L+ P N+ +
Sbjct: 338 GHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLDYVP-------------NEAR 384
Query: 518 RM---AAI-NSFGFSGTNAHIVL 536
A+ NSFGF GTNA +V
Sbjct: 385 ERKIDYALSNSFGFGGTNASLVF 407
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 154 bits (392), Expect = 1e-40
Identities = 110/430 (25%), Positives = 174/430 (40%), Gaps = 43/430 (10%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKI---PSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEI 183
P + W L+ G++ + K+ P + +N + C+ + + D
Sbjct: 4 PLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQ-IAAEVDQSE 62
Query: 184 FDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFS-LSGSLCGVFVGCAVSDYNK 242
FDP F + E + + DA + S GV +G +
Sbjct: 63 FDPSDFAPTKRE----SRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLAD 118
Query: 243 LITDPKMYNAYALMGESVS--ILPA--------RVSYFLNLQGPCLAIDTACSSSLVAIA 292
L + M Y VS +P V+ L+GP + TAC++ I
Sbjct: 119 LTDE--MKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIG 176
Query: 293 HACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS------PDGHCYSFDQRANGFV 346
A + G + I + GG TP S+ L P FD+ GFV
Sbjct: 177 EAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFV 236
Query: 347 PGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIR-LQTKIY 403
GEG G+L+L++L+ A + G IY I+G+G + D + ITAP + + R ++ +
Sbjct: 237 MGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDA--HHITAPHPDGRGARRCMENALK 294
Query: 404 KKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATA 463
NIN ND+ + AH T T +GD IE +A+ + F K + S K +GH A
Sbjct: 295 DGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPK--LYVSSTKGGLGHLLGA 352
Query: 464 AGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAI- 522
AG + I ILSL +++PPTIN + L + + +++ A +
Sbjct: 353 AGAVESIVTILSLYEQIIPPTINLENPDAECDLN-----LVQGKTAHPLQSID---AVLS 404
Query: 523 NSFGFSGTNA 532
SFGF G N
Sbjct: 405 TSFGFGGVNT 414
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 143 bits (362), Expect = 1e-36
Identities = 111/451 (24%), Positives = 181/451 (40%), Gaps = 60/451 (13%)
Query: 113 NNDDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTIC 172
N I + G+ P V+ FW LL G++ + + + D
Sbjct: 2 NKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDF--PVGD-----------LAT 48
Query: 173 KKMGSLEDIEIFDPLFFN----ISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSL 228
K G + D+ F+ + P + MD + + AG++P +L
Sbjct: 49 KIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRE 108
Query: 229 -CGVFVGCAVSDYNKL-----ITD---PKMYNAYALMGESVSILPARVSYFLNLQGPCLA 279
+G V + + D P+ + + + ++ VS +GP A
Sbjct: 109 RTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGA 168
Query: 280 IDTACSSSLVAIAHACDSLILGNSKIALAGGV-YIINTPDIHIKMSKSGM-----LS--- 330
TAC++ + AI A + G + +A+ GG I+ ++S +G LS
Sbjct: 169 PVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAID------RVSLAGFAAARALSTRF 222
Query: 331 ---PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGI 387
P+ FD+ +GFV GEG G+L+++ L+ A G + G+G + D +
Sbjct: 223 NDAPEQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYH--M 280
Query: 388 TA-PNTKSQIRLQTKI-YKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHK 445
TA P R I ++ I P ++Q L AH T T +GD E A+ + F H
Sbjct: 281 TAGPEDGEGARRAMLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFG----HV 336
Query: 446 NFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINT 505
+ A+ S KS GH AAG + I IL+L+ ++ PPT+N L +
Sbjct: 337 SGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLN---LENPDPAAEGLDVVAN 393
Query: 506 KCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
K + D+ A N FGF G NA I+
Sbjct: 394 KARPMDMD-----YALSNGFGFGGVNASILF 419
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 137 bits (346), Expect = 3e-36
Identities = 63/286 (22%), Positives = 106/286 (37%), Gaps = 67/286 (23%)
Query: 252 AYALMGESVSILPARVSYFLNLQ-GPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG 310
S +++Y L + GP +++ AC++ L A+A A + G + I LAGG
Sbjct: 35 GTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGG 94
Query: 311 VYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIY 370
FV G+G +++ + A + G
Sbjct: 95 S-------------------------------EEFVFGDGAAAAVVESEEHALRRGAHPQ 123
Query: 371 CIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIE 430
I DG + + A + + R K + + P+DI +EAHGTGT +GD +E
Sbjct: 124 AEIVSTAATFDGAS-MVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVE 182
Query: 431 FEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNIL 490
+ A+ + GH AAG+ + +++L L+H+ +PPT
Sbjct: 183 LALGLDPDG-----VRSPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT------ 231
Query: 491 NEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
++ R + FG GTNA +VL
Sbjct: 232 -----------------------PREPRTVLLLGFGLGGTNAAVVL 254
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 134 bits (340), Expect = 2e-35
Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 6/218 (2%)
Query: 593 ITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKI---QKGISRFTDEKSYCMPLY- 648
+ A + K I++TG F+ G + + Q+ + + L
Sbjct: 30 LIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAAEPLAQQAQFSLEAQDLW-SRLED 88
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGK 708
PVIAA+ G+A+G G + L CDY I ++ + + P ++ G PGAG T P+ G
Sbjct: 89 LPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQRLPRIIGV 148
Query: 709 ILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKKYYS 768
+ E+L T + +E + G+ V+P +Q++ +++LA++L+ L K
Sbjct: 149 SAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADKPPLALAALKAAMR 208
Query: 769 HSLQKKLSTIFLHELTMHDYTFVNNPSVITNIERYFDK 806
+L+ L + L ++ + V I+ + +K
Sbjct: 209 AALEDALPEVRAQALRLY-PAPFSTDDVKEGIQAFLEK 245
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 137 bits (347), Expect = 5e-35
Identities = 98/339 (28%), Positives = 151/339 (44%), Gaps = 43/339 (12%)
Query: 214 IEDAGYNPFSLSGSL--CGVFVG----CAVSDYNKL----ITDPKMYNAYALMGESVSIL 263
++DAG L+ L CGV +G C + KL + + + L
Sbjct: 68 LKDAG-----LTPPLTDCGVVIGSSRGCQGQ-WEKLARQMYQGDDSPDEELDLENWLDTL 121
Query: 264 PARVSYF----LNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDI 319
P + + + QGP LA AC++ L AIA + + G + +AG V TP
Sbjct: 122 PHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLT 181
Query: 320 HIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVN 379
+ G L+ G Y FD++ G V GEG +L+L+ + A+K G IY I G+G+
Sbjct: 182 LAGFQQMGALAKTG-AYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLT 240
Query: 380 QDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFN 439
D P+ KS I + + + P DI + AHGT T+L D E L ++
Sbjct: 241 CDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQRE-ANLIQAL- 298
Query: 440 KFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENS 499
F H+ A+ S K GH+ A+G +G+ +L+L+H+ LPP + L+
Sbjct: 299 -FP-HR--VAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVG---------LQEP 345
Query: 500 PFFIN--TKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
F +N + + ++N SFGF G NA I L
Sbjct: 346 EFDLNFVRQAQQSPLQN-----VLCLSFGFGGQNAAIAL 379
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 132 bits (334), Expect = 5e-33
Identities = 88/279 (31%), Positives = 133/279 (47%), Gaps = 21/279 (7%)
Query: 267 VSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKS 326
VS QGP A TAC++ +I A + G++ + +AGG S+S
Sbjct: 167 VSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRS 226
Query: 327 GMLS------PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQ 380
LS P FD +GFV GEG GVL+L++L+ AK+ G IY ++G+G++
Sbjct: 227 RALSTKFNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSG 286
Query: 381 DGKTNGITAPNT--KSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESF 438
D + IT P+ + + T+ ++ ++PN + + AH T T LGD +E A+ F
Sbjct: 287 DA--HHITQPHEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVF 344
Query: 439 NKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLEN 498
++ + A S K GH AAG + I +L++ H + PPT+N LE
Sbjct: 345 SEHATSGGL-AFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLN---------LER 394
Query: 499 -SPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
P F + K R A NSFGF GTNA ++
Sbjct: 395 PDPIFDDGFVPLTASKAMLIRAALSNSFGFGGTNASLLF 433
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 129 bits (327), Expect = 3e-32
Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 25/277 (9%)
Query: 267 VSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALA-GGVYIINTPDIHIKMSK 325
S ++G + A +S +A+ A + G+ +A G + ++ + S
Sbjct: 150 CSEQFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSL 209
Query: 326 SGMLS------PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVN 379
M S P+ C FDQ +GF+ GE G ++L+ + A++ G Y + GW +
Sbjct: 210 GAMGSDRFADEPEAACRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMR 269
Query: 380 QDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFN 439
D P+ + ++R+ ++ + P DI + HGTG+ LGD E AL
Sbjct: 270 LDANRG--PDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAAL----- 322
Query: 440 KFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENS 499
F+ + + KS GH +AAG++ +I +L ++ L P+ N L+E I +
Sbjct: 323 -FASGLAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRN---LDEPI--DER 376
Query: 500 PFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
++ + +S I+ A SFGF G N +VL
Sbjct: 377 FRWVGSTAESARIRY-----ALSLSFGFGGINTALVL 408
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 121 bits (305), Expect = 3e-31
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG--------------TKEGLLKIQ 631
+ ++ + A + +V+++TG F G + + ++Q
Sbjct: 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQ 83
Query: 632 KGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG 691
+ + L PVIAA+ G A+G G + L CD I +E++ + P ++ G
Sbjct: 84 ELLRAL---------LRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLG 134
Query: 692 FTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
PG G T P+ G +RE+L T +E E G+ V+P +++L +L+LA++
Sbjct: 135 LVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194
Query: 752 L 752
L
Sbjct: 195 L 195
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 124 bits (313), Expect = 2e-30
Identities = 115/404 (28%), Positives = 174/404 (43%), Gaps = 50/404 (12%)
Query: 163 DKNAIGKTICKKMGSLEDIEIFDPLFF---------NISPSEAEYMDPQQ--------RL 205
+K + K IC ++ I +FD F + P+E MDP++ +L
Sbjct: 18 NKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEV--MDPKEVKKADRFIQL 75
Query: 206 FLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAVS-----DYNKLITD---PKMYNAYALMG 257
L+ ++DAG+ P L GV + + N +I P+ + + +
Sbjct: 76 GLKAAREAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPS 135
Query: 258 ESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTP 317
V++L +S L+GP L+ TAC++ AI A +++LG + L G P
Sbjct: 136 ALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICP 195
Query: 318 DIHIKMSKSGMLS-----PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCI 372
+ LS P FD+ +GFV GEG G L+L++ + AKK G IY
Sbjct: 196 VGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAE 255
Query: 373 IKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFE 432
I G+G + G N IT+P + +R + NP I + AHGT T D E
Sbjct: 256 IIGFG--ESGDANHITSPAPEGPLRAMKAALEMAG-NPK-IDYINAHGTSTPYNDKNETA 311
Query: 433 ALCESFNKFSYHKNFCAL-GSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILN 491
AL E F K S K IGH AAG I + I++++ +LPPTIN +
Sbjct: 312 ALKELFGS----KEKVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPD 367
Query: 492 EHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIV 535
L+ P N K+ + + NSFGF GTN ++
Sbjct: 368 PECDLDYIP---NVARKA------ELNVVMSNSFGFGGTNGVVI 402
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 117 bits (294), Expect = 5e-28
Identities = 83/262 (31%), Positives = 126/262 (48%), Gaps = 22/262 (8%)
Query: 282 TACSSSLVAIAHACDSLILGNSKIALAGGV--YIINTP-----DIHIKMSKSGMLSPDGH 334
+AC+S AIA A ++LG + IA+ GGV I P + I MS + P G
Sbjct: 169 SACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNND-DPAGA 227
Query: 335 CYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKS 394
C FD+ +GFV GEG +++++ + AK G +I I G + DG PN +
Sbjct: 228 CRPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGER 287
Query: 395 QIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVK 454
T+ + + P DI + AH TGT +GD E +A+ N H+ A+ + K
Sbjct: 288 AGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAI---NNALGGHR--PAVYAPK 342
Query: 455 SNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKN 514
S +GHS A G + I +L+L+ V+PPT+N L+ I L+ + + + +
Sbjct: 343 SALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEIDLD----VVAGEPRPGNY-- 396
Query: 515 KKKRMAAINSFGFSGTNAHIVL 536
R A NSFGF G N +
Sbjct: 397 ---RYAINNSFGFGGHNVALAF 415
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 112 bits (281), Expect = 2e-27
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 6/210 (2%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGI--SRFTDEKSY 643
N ++ + +A + +V+++TG F+ G + LL + G
Sbjct: 30 NLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQD 89
Query: 644 CMP--LYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLI 701
+ PVIAA+ G+A+G G + L CD I +E++ + P + G PG G T
Sbjct: 90 LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQR 149
Query: 702 FPQRFGKILSREILFTASEFKGKELKERG-ISMPVLPRKQVLFYSLKLAKKLSLLSKKEL 760
P+ G+ ++E+L T E E G + V +++L +L+LA++L+ L
Sbjct: 150 LPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLA-APPLAL 208
Query: 761 ELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
K+ +L+ L+ E F
Sbjct: 209 AATKRLVRAALEADLAEALEAEALAFARLF 238
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 115 bits (288), Expect = 3e-27
Identities = 103/437 (23%), Positives = 187/437 (42%), Gaps = 48/437 (10%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ + G+ P N V+ W LL G++ + I + +D+ + + G
Sbjct: 6 VVVTGMGMLSPVGNTVESSWKALLAGQSGIVNI--------EHFDTTNFST-----RFAG 52
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTC----IEDAGYNPFSLSGSLCGVF 232
++D F+ + +S +A MD LF+Q ++D+G + GV
Sbjct: 53 LVKD---FNCEEY-MSKKDARKMD----LFIQYGIAAGIQALDDSGLEVTEENAHRIGVA 104
Query: 233 VGCAV-------SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTAC 284
+G + + + L+ P+ + + + V+++ +S L+GP +AI TAC
Sbjct: 105 IGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTAC 164
Query: 285 SSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS-----PDGHCYSFD 339
++ L I HA + G++ +AGG +TP + LS P +D
Sbjct: 165 TTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWD 224
Query: 340 QRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQ 399
+ +GFV G+G G+++L++ + AK G IY + G+G++ D + +
Sbjct: 225 KDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAM 284
Query: 400 TKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGH 459
+ + I + AHGT T GD E + + + + + + S KS GH
Sbjct: 285 EAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQ--VLVSSTKSMTGH 342
Query: 460 SATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRM 519
AAG + I ++SL +++PPTIN + E + ++ P K +
Sbjct: 343 LLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDLVPHTAR--------KVESMEY 394
Query: 520 AAINSFGFSGTNAHIVL 536
A NSFGF GTN ++
Sbjct: 395 AICNSFGFGGTNGSLIF 411
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 108 bits (272), Expect = 4e-25
Identities = 80/266 (30%), Positives = 118/266 (44%), Gaps = 29/266 (10%)
Query: 282 TACSSSLVAIAHACDSLILGNSKIALA----GGVYIINTPDIHIKMSKSGMLS-----PD 332
TAC+S AI +++ G + AL G V + + I+ S LS P+
Sbjct: 173 TACASGATAIQLGVEAIRRGETDRALCIATDGSV----SAEALIRFSLLSALSTQNDPPE 228
Query: 333 GHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT 392
F + +GFV EG G L+L+ L+ A G I I+ G G D ++P+
Sbjct: 229 KASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDG 288
Query: 393 KSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGS 452
I + P I + AHGT T D +E+ L F + + S
Sbjct: 289 SPAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERLAS---IPVSS 345
Query: 453 VKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDI 512
KS IGH+ TAAG + + +L+++ LPPTINY+ + I L+ P N
Sbjct: 346 NKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDVVP---NVA------ 396
Query: 513 KNKKKRMAAI--NSFGFSGTNAHIVL 536
+ R+ A+ NSFGF G NA +VL
Sbjct: 397 --RDARVTAVLSNSFGFGGQNASLVL 420
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 107 bits (270), Expect = 6e-25
Identities = 96/345 (27%), Positives = 148/345 (42%), Gaps = 48/345 (13%)
Query: 214 IEDAGYNPFSLSGSLCGVFVGC---------AVSDYNKLITDPKMYNAYAL---MGESVS 261
I DAG + +S G+ G +D + PK YA+ M +VS
Sbjct: 83 IADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVS 142
Query: 262 ILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHI 321
A ++ ++G +I +AC++S I +A + + LG I AGG ++
Sbjct: 143 ---ACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGG-----GEELDW 194
Query: 322 KMS----KSGMLS------PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYC 371
+MS G LS P+ ++D +GFV G GV+++++L+ A G IY
Sbjct: 195 EMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYA 254
Query: 372 IIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEF 431
I G+G DG + AP+ + +R + I + HGT T +GD E
Sbjct: 255 EIVGYGATSDGYD--MVAPSGEGAVRCMQMALATVD---TPIDYINTHGTSTPVGDVKEL 309
Query: 432 EALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILN 491
A+ E F A+ + KS GHS AAGV I +L ++H + P+ N L+
Sbjct: 310 GAIREVFG-----DKSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELD 364
Query: 492 EHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
+ P I T+ N + NSFGF GTNA +V
Sbjct: 365 P--QAAGMP--IVTET----TDNAELTTVMSNSFGFGGTNATLVF 401
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 101 bits (253), Expect = 3e-23
Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 20/297 (6%)
Query: 247 PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIA 306
PK + + + V++ VS + +GP A TAC++ + AI A + + +A
Sbjct: 54 PKRLSPFTVPSFLVNLAAGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVA 113
Query: 307 LAGGV-YIINTPDIH-----IKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLK 360
L GG +I+T + +S +P+ FD +GFV GEG G+L++++L+
Sbjct: 114 LCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELE 173
Query: 361 DAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHG 420
A G I G+G + D A + R ++ I P +Q L AH
Sbjct: 174 HALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHA 233
Query: 421 TGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKV 480
T T +GD E A+ F + N A+ S KS GH AAG + I +L+L+ ++
Sbjct: 234 TSTPVGDLGEINAIKHLFGE----SNALAITSTKSATGHLLGAAGGLETIFTVLALRDQI 289
Query: 481 LPPTINYNILNEHIKLEN-SPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
+P T+N LEN P + + + A N FGF+G NA I+L
Sbjct: 290 VPATLN---------LENPDPAAKGLNIIAGNAQPHDMTYALSNGFGFAGVNASILL 337
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 103 bits (257), Expect = 7e-23
Identities = 100/370 (27%), Positives = 159/370 (42%), Gaps = 45/370 (12%)
Query: 191 ISPSEAEYMDPQQRLFLQNCWTCIEDAGYNP---FSLSGSLCGVFVGCAVSD---YNKLI 244
++P ++ MD L + D G L + CGV +G A+ +N I
Sbjct: 188 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAI 247
Query: 245 ----TDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLIL 300
+ N + + + ++ A ++ L GP +I TAC++S I +A + +I
Sbjct: 248 EALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 307
Query: 301 GNSKIALAGGVYIINTPDIHIKMSKSGMLS----------PDGHCYSFDQRANGFVPGEG 350
G + + L GG + I I + G ++ P +D +GFV GEG
Sbjct: 308 GEADVMLCGGS---DAAIIPIGL--GGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEG 362
Query: 351 VGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINP 410
GVL+L++L+ AKK G +IY G D P I K + ++
Sbjct: 363 AGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSK 422
Query: 411 NDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMI 470
D+ + AH T TK GD E++AL F + + + S KS IGH AAG + I
Sbjct: 423 EDVNYINAHATSTKAGDLKEYQALMRCFGQNPELR----VNSTKSMIGHLLGAAGAVEAI 478
Query: 471 KIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRM----AAINSFG 526
+ +++ + P IN LEN ++TK + KK+R+ A NSFG
Sbjct: 479 ATVQAIRTGWVHPNIN---------LENPESGVDTKVL---VGPKKERLDIKVALSNSFG 526
Query: 527 FSGTNAHIVL 536
F G N+ I+
Sbjct: 527 FGGHNSSILF 536
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for
polyketide chain initiation of aromatic
antibiotic-producing polyketide synthases (PKSs) of
filamentous bacteria. CLFs have been shown to have
decarboxylase activity towards malonyl-acyl carrier
protein (ACP). CLFs are similar to other elongation
ketosynthase domains, but their active site cysteine is
replaced by a conserved glutamine.
Length = 399
Score = 83.6 bits (207), Expect = 7e-17
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 29/226 (12%)
Query: 273 LQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTP---DIHIKMSKSGML 329
++GP + + L A+A A L+ + + ++GGV P + SG L
Sbjct: 150 MRGPSGVVVAEQAGGLDALAQA-RRLVRRGTPLVVSGGVDSALCPWGWVAQLS---SGRL 205
Query: 330 SPDG---HCY-SFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTN 385
S Y FD A G+VPGEG +L+L+ A++ G +Y I G+ D
Sbjct: 206 STSDDPARAYLPFDAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPG 265
Query: 386 GITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHK 445
P IRL + P D+ ++ A G D E AL F
Sbjct: 266 SGRPPGLARAIRLA---LADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP----- 317
Query: 446 NFCALGSV-----KSNIGHSATAAGVIGMIKIILSLKHKVLPPTIN 486
V K+ G + + +L+L+ V+PPT+N
Sbjct: 318 -----RGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVN 358
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 82.7 bits (205), Expect = 1e-16
Identities = 74/286 (25%), Positives = 114/286 (39%), Gaps = 38/286 (13%)
Query: 264 PARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG--------VYIIN 315
V F L+G + +AC+S I +A +++ G + LAGG + +
Sbjct: 144 AVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEELCPTEAAVFD 203
Query: 316 TPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKG 375
T + + L+P FD +G V GEG G L+L++L+ AK G IY I G
Sbjct: 204 TLFATSTRNDAPELTPR----PFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVG 259
Query: 376 WGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALC 435
+G N DG +T P ++ K + P DI + AHGT T GD E +A
Sbjct: 260 FGTNSDGAH--VTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATA 317
Query: 436 ESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIK 495
F + S+KS GH+ A G + I + PT+N L +
Sbjct: 318 AVF------GARMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLN---LTQ--- 365
Query: 496 LENSPFFINTKCKSWD-----IKNKKKRMAAINSFGFSGTNAHIVL 536
++ C + D + N+F F G N ++
Sbjct: 366 -------VDPACGALDYIMGEAREIDTEYVMSNNFAFGGINTSLIF 404
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 79.1 bits (196), Expect = 3e-16
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 29/197 (14%)
Query: 585 KNS---TVVKGITDAFSYINSSVQYKVIIITGYENYFACGG----------TKEGLLKIQ 631
KN+ + + + DA + +V+++TG F+ GG L
Sbjct: 26 KNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV 85
Query: 632 ----KGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPY 687
+ I+ K PV+AA+ G A+G G ++ L CD SE + + P+
Sbjct: 86 NRFLRAIAAL--PK----------PVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPF 133
Query: 688 MRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLK 747
+ G P AG + + P+ G+ + E+L +E G+ V+P ++ +
Sbjct: 134 AKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADA 193
Query: 748 LAKKLSLLSKKELELQK 764
A KL+ L K
Sbjct: 194 QAAKLAAGPASALRYTK 210
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 77.4 bits (191), Expect = 1e-15
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 578 NYISKDLKNSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGI--- 634
N +S++L++ + F I+ +V+++TG F G +G + KG
Sbjct: 25 NALSRELRDE-----LIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79
Query: 635 ---SRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG 691
+R T E + + C PVIAA+ G A+GAG + CD + SE +V+ P + G
Sbjct: 80 RAHNRRTRECFHAI-RECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVG 138
Query: 692 FTPGA--GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLA 749
G L FG L+R ++ T EL RG+ LP ++++ ++++A
Sbjct: 139 LAGGGKHAMRL-----FGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIA 193
Query: 750 KKLSLLSKKELELQKKYYSHSL 771
+ + SK L + +L
Sbjct: 194 R--EIASKSPLAT--RLAKDAL 211
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 78.3 bits (194), Expect = 3e-15
Identities = 71/293 (24%), Positives = 106/293 (36%), Gaps = 63/293 (21%)
Query: 264 PAR-VSYFLNLQGPCLAIDTACSSSLVAIAHA--------CDSLILGNSKIALAGGVYII 314
A + +L L GP I TACSSS A A CD A+ GGV
Sbjct: 139 LADFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEAGLCD--------AAIVGGV--- 187
Query: 315 NTPDIHIKMSKSG-----MLSPDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDI 369
D +++ +G LSP C F +G GE +L ++D +
Sbjct: 188 ---DSLCRLTLNGFNSLESLSP-QPCRPFSANRDGINIGEAAAFFLL-----EREDDAAV 238
Query: 370 YCIIKGWGVNQDGKTNGITAPNT--KSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGD 427
+ G G + D + ++AP+ I + + P DI + HGT T L D
Sbjct: 239 --ALLGVGESSDA--HHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLND 294
Query: 428 PIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINY 487
+E A+ F + S K GH+ AAG + L+L+H + P N
Sbjct: 295 AMESRAVAAVFG------DGVPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNT 348
Query: 488 NILNEHIK----LENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
+ + +EN+ R NSF F G N ++
Sbjct: 349 GQPDPALPPLYLVENAQ-------------ALAIRYVLSNSFAFGGNNCSLIF 388
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 73.2 bits (180), Expect = 3e-14
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 22/191 (11%)
Query: 600 INSSVQYKVIIITGYENYFACGGT-------------KEGLLKIQKGISRFTDEKSYCMP 646
IN +V+I+TG C G + + I+ + E+ +P
Sbjct: 43 INEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMV--EQ---LP 97
Query: 647 LYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRF 706
PVIAA+ G A+G G + L CD+ I +E + PGAG T P+
Sbjct: 98 Q----PVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLI 153
Query: 707 GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKKY 766
G ++E+++T +E KE G+ V+P + ++++A+K++ + K+
Sbjct: 154 GVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEA 213
Query: 767 YSHSLQKKLST 777
S+ +Q L T
Sbjct: 214 ISNGIQVDLHT 224
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 72.4 bits (178), Expect = 6e-14
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKE----GLLKIQKGISRFTDE 640
N V + + + F+ ++ + I++TG E FA G KE G +++ R T+
Sbjct: 33 NMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYL---RHTER 89
Query: 641 KSYCMPL-YCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
Y + C PVIAA+ G+A+G G + + D + E + + P ++ G PGAG T
Sbjct: 90 --YWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGT 147
Query: 700 LIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLL 755
QR GK + + T E G+ V+ +Q L +L+LA++++ +
Sbjct: 148 ----QRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARM 203
Query: 756 S 756
Sbjct: 204 P 204
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 71.2 bits (175), Expect = 2e-13
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 588 TVVKGITDAFSYINSSVQYKVIIITGYENYFACGGT------KEGL-----LKI----QK 632
V + A + IN+ + +I+TG F+ GG + G I +
Sbjct: 31 DAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRH 90
Query: 633 GISRFTDEKSYCMPLY-CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG 691
GI R + LY ++PVIAA+ G AIGAG + CD I SE + + +++ G
Sbjct: 91 GIQRIP------LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLG 144
Query: 692 FTPGAGSTLIFPQRFGKILSR--EILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLA 749
PG G + P+ G ++R E+ FT E G+ V+P Q+L + LA
Sbjct: 145 LIPGDGGAWLLPRIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALA 202
Query: 750 KKLSLLSKKELELQKKYYSHSLQKKLSTI 778
++++ L L K+ L T+
Sbjct: 203 ERIAANPPHALRLTKRLLREGQHASLDTL 231
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 64.4 bits (157), Expect = 3e-11
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 608 VIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCMPLYCKI-----PVIAAMQGHAI 662
V +ITG +FA G + + + + D + L+ ++ P+IAA+ G+A+
Sbjct: 49 VCVITGNARFFAAGADLNEMAE-KDLAATLNDPR---PQLWQRLQAFNKPLIAAVNGYAL 104
Query: 663 GAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRF----GKILSREILFTA 718
GAG + L CD I E + + P + G PGAG T QR GK L+ +++ T
Sbjct: 105 GAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGT----QRLIRSVGKSLASQMVLTG 160
Query: 719 SEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQK 764
++ ++ G+ V P + L +L+LA K++ S L K
Sbjct: 161 ESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAK 206
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 64.1 bits (156), Expect = 4e-11
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKIL 710
IP IA ++G A+G G + L CD I EE+V+ P PGAG T P+ G+
Sbjct: 89 IPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSR 148
Query: 711 SREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
++E++FT +E G+ +P + +L+LA++++
Sbjct: 149 AKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEIN 191
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 60.8 bits (148), Expect = 4e-10
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
N ++ + A + ++ I+ITG E FA G +K +S F D Y
Sbjct: 29 NDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGAD----IKEMADLS-FMD--VYKG 81
Query: 646 PLY--------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
+ PVIAA+ G+A+G G + + CD I ++ + + P ++ G PG G
Sbjct: 82 DYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMG 141
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLS 756
+ + GK + ++ T E + G+ V+P ++L +L A ++ S
Sbjct: 142 GSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS 200
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 60.8 bits (148), Expect = 5e-10
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 609 IIITGYENYFACGGTKEGLLKI-QKGISRFTDEKSYCMPLYCKI-----PVIAAMQGHAI 662
+++TG +F GG LL+ K S I PVIAA++G A
Sbjct: 51 VVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAA 110
Query: 663 GAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILSR----EILFTA 718
GAG+++ L CD + + ++ + Y++ G TP G + F R L R E+L
Sbjct: 111 GAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSW-FLARA---LPRQLATELLLEG 166
Query: 719 SEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
+ L G+ + Q L +L LA +L
Sbjct: 167 KPISAERLHALGVVNRLAEPGQALAEALALADQL 200
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 58.6 bits (142), Expect = 2e-09
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 593 ITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEK-SYCMPLY-CK 650
+ A ++ + + G E F+ G + L G + F E + + L +
Sbjct: 38 MAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAE 97
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKIL 710
P+++ + G AIG G + L CD T S S++++P++ P AGS+L+ P+ G
Sbjct: 98 KPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157
Query: 711 SREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
+ +L F + +E G+ ++ + V +LK A++L+
Sbjct: 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELA 200
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 58.1 bits (141), Expect = 3e-09
Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQ------KGISRFTD 639
N+ V +G+ A +++ V I+TG F G + + + +G T+
Sbjct: 28 NAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTE 87
Query: 640 EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
+ P+IAA++G+A+ G+ + L CD + + ++ + P ++ G G
Sbjct: 88 RPP-------RKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGL 140
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
L P+R ++ E+ T + E G+ + Q L +L+LA++++
Sbjct: 141 LRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIA 194
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 58.2 bits (141), Expect = 3e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
PVIAA+ G+A G G+ + L D+ + ++ + + P + G P +G L P+R ++
Sbjct: 96 PVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
E++ T +E GI V+P+ +++ + +LA++L
Sbjct: 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLV 197
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 57.0 bits (138), Expect = 8e-09
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 6/181 (3%)
Query: 587 STVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCMP 646
S V+ +++ + +V++I G +F+ G + + + + T+
Sbjct: 27 SQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEA-EQATELAQLGQV 85
Query: 647 LY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLI 701
+ PVIAA+ G A+G G + + C +E + P + G PG T
Sbjct: 86 TFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQR 145
Query: 702 FPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELE 761
P+ GK + E++ T+ G E + G+ V P + +L + KLAKK++ S
Sbjct: 146 LPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR 205
Query: 762 L 762
Sbjct: 206 A 206
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 56.7 bits (137), Expect = 9e-09
Identities = 35/131 (26%), Positives = 65/131 (49%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
PVIAA+ G A+G G + + CD I SE++ + P + G TPG G T + G +
Sbjct: 99 PVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKKYYSHSL 771
+E+++T +E G+ V+ ++++ + LA K++ + ++L K + +
Sbjct: 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGM 218
Query: 772 QKKLSTIFLHE 782
Q + T E
Sbjct: 219 QVDIDTAVAIE 229
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 56.9 bits (138), Expect = 1e-08
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 578 NYISKDLKNSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGT--KEGLLKIQKGIS 635
N +S L + + A + ++ V+++TG + F C G KE L
Sbjct: 26 NALSAAL-----RRALFAALAEADADDDVDVVVLTGADPAF-CAGLDLKE--LGGDGSAY 77
Query: 636 RFTDEKSYCMPLY--CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFT 693
D P + + PVI A+ G A+ G + L CD I SE + + + R G
Sbjct: 78 GAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGIL 137
Query: 694 PGAGSTLIFPQRFGKILSREILFTASEFKGKELKER-GISMPVLPRKQVLFYSLKLA 749
PG G ++ PQ+ G +R + T +F R G+ V+P ++L + +LA
Sbjct: 138 PGWGLSVRLPQKVGIGRARRMSLTG-DFLDAADALRAGLVTEVVPHDELLPRARRLA 193
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 55.8 bits (135), Expect = 2e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGK 708
P+IAA+ G A+G G+ + L CD + +E + + P R G AG P++ G
Sbjct: 93 LDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGL 152
Query: 709 ILSREILFTASEFKGKELKERGISMPVLPRKQVL 742
+ ++ T +E E G V+P ++L
Sbjct: 153 KRAMGMILTGRRVTAREGLELGFVNEVVPAGELL 186
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 54.7 bits (132), Expect = 5e-08
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 621 GGTKEGLLKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEE 680
++GL +I G C +P IAA+ G A+GAG + L D I +
Sbjct: 75 RPAEDGLRRIYDGFLAVAS---------CPLPTIAAVNGAAVGAGLNLALAADVRIAGPK 125
Query: 681 SVYQSPYMRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPV 735
+++ + + + G PG G+T + + G ++R L F + G+++ V
Sbjct: 126 ALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMV 180
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 54.7 bits (132), Expect = 5e-08
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 12/192 (6%)
Query: 592 GITDAFSYINS-SVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTD-----EKSYCM 645
G+ +A I + + +++TG F G +G + D E +Y
Sbjct: 35 GLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAY-H 93
Query: 646 PLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTL 700
P ++ P++ A+ G A G G + L D + + + + + R G P GST
Sbjct: 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTW 153
Query: 701 IFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKEL 760
+ P+ GK + E+ + + + G+ V+ +++ ++KLA +L+ L
Sbjct: 154 LLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVAL 213
Query: 761 ELQKKYYSHSLQ 772
L +K Y S +
Sbjct: 214 GLIRKLYWDSPE 225
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 54.7 bits (132), Expect = 6e-08
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 607 KVIIITGYENYFACGGTKEGLLKIQ-KGISRFTDEKSYCM---PLY---------CKIPV 653
+VI++TG F G L I R TD + + P Y + PV
Sbjct: 52 RVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPV 111
Query: 654 IAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILSRE 713
IAA+ G G G L CD ++ + + + + R G G + I P+ G + +
Sbjct: 112 IAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALD 171
Query: 714 ILFTASEFKGKELKERGISMPVLP----RKQVLFYSLKLAKKLS 753
+L +A F +E G+ V+P ++ L Y+ LA+ +S
Sbjct: 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVS 215
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 54.1 bits (130), Expect = 8e-08
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 7/169 (4%)
Query: 590 VKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGL-----LKIQKGISRFTDEKSYC 644
VK I A V+I+TG + C G + + G+ R
Sbjct: 32 VKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQR 91
Query: 645 MPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG-FTPGAGSTLIFP 703
C PVIA + G+AIG G + + CD TI +E + + + G F G GS+ +
Sbjct: 92 QIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVGSFDGGYGSSYMAR 151
Query: 704 QRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G+ +REI F ++ K+ + G+ V+P + +++ +++
Sbjct: 152 I-VGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREI 199
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 53.8 bits (129), Expect = 1e-07
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG-FTPGAGSTLIFPQRFGKIL 710
PVIA +QG+AIG G + CD TI SE++ + + G PG G+ L+ + G+
Sbjct: 96 PVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALL-ARVVGEKK 154
Query: 711 SREILFTASEFKGKELKERGISMPVLPRKQV 741
+REI + + +E G+ V+P Q+
Sbjct: 155 AREIWYLCRRYTAQEALAMGLVNAVVPHDQL 185
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 53.1 bits (128), Expect = 1e-07
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
+PVIAA+ G AIGAG + + CD + + E+ +Q P +YG
Sbjct: 85 APVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGI 128
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 51.3 bits (123), Expect = 6e-07
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
PVIAA+ G A G G + I SE +++ P +R G P G T P+ G+ +
Sbjct: 102 PVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
E+L T F + E G+ V+P +++L + LA+++
Sbjct: 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRI 202
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 51.0 bits (122), Expect = 1e-06
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA-GSTLIFPQRFGKIL 710
PVIAA+ G AIG G + L D + S + +++ + G T G + + P+ G
Sbjct: 111 PVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSR 170
Query: 711 SREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKK 765
+ EI+ T + +E + G+ +P +Q+L +A +++ S+ +EL K+
Sbjct: 171 AFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKR 225
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 50.1 bits (120), Expect = 1e-06
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 592 GITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCMPLYCKI 651
+ DA+ +++ + I+TG F G + K G F D SY +I
Sbjct: 36 IMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPG-DSFKD-GSYDPS---RI 90
Query: 652 -----------PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTL 700
P+IAA++G AI G + D + E + + ++ P GS +
Sbjct: 91 DALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAV 150
Query: 701 IFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLA 749
++ ++ ++L T E KE G+ V+P Q L +L+LA
Sbjct: 151 RLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELA 199
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 50.0 bits (120), Expect = 2e-06
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA---GSTL----- 700
++P IAA+ G +G G A+ CD I + + R+GF P A G+ L
Sbjct: 101 LRVPTIAAIAGACVGGGAAIAAACDLRIATPSA-------RFGF-PIARTLGNCLSMSNL 152
Query: 701 ------IFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSL 754
+ R +++LFTA + +E G+ V+ + + LA+ L+
Sbjct: 153 ARLVALLGAAR-----VKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAA 207
Query: 755 LS 756
+
Sbjct: 208 HA 209
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 49.6 bits (119), Expect = 2e-06
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 607 KVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM---------PLYCKIPVIAAM 657
+V++I G F+ GG L +++ F + ++ + C P+++A+
Sbjct: 58 RVVLIRGEGKAFSAGGD---LALVEEMADDF-EVRARVWREARDLVYNVINCDKPIVSAI 113
Query: 658 QGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILSREILFT 717
G A+GAG L D +I ++++ + R G G + +++P G ++ L
Sbjct: 114 HGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLL 173
Query: 718 ASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G+E + G+ + ++L +L++A++L
Sbjct: 174 CEPVSGEEAERIGLVSLAVDDDELLPKALEVAERL 208
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 51.0 bits (122), Expect = 2e-06
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEE--SVYQSPYMRYGFTPGAGSTLIFPQRFGK 708
IPV+AA+ G +G G + L C + S++ +V P ++ G PG+G T P+ G
Sbjct: 97 IPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGV 156
Query: 709 ILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKK 765
+ +++ T + + K+ + G+ V+P+ +L ++++A K +K L LQ++
Sbjct: 157 STALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALK-GKPIRKPLSLQER 212
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 49.5 bits (118), Expect = 3e-06
Identities = 28/126 (22%), Positives = 53/126 (42%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
PV+ A+ G A GAG + L CD + +E + + + + G P +G T P+ G+ +
Sbjct: 95 PVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARA 154
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKKYYSHSL 771
+ + + G+ V+ ++ + LA L+ + L L K+ +
Sbjct: 155 MGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAA 214
Query: 772 QKKLST 777
L T
Sbjct: 215 TNSLDT 220
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 49.4 bits (118), Expect = 3e-06
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 596 AFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKS---YCMPLYCKIP 652
AF ++ KVII+TG F G ++ KG + D ++ M C+ P
Sbjct: 45 AFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVK--DVETDPVAQMER-CRKP 101
Query: 653 VIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILSR 712
+I A+ G AI AG+ + L CD + S + + + ++G P G + + G +R
Sbjct: 102 IIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAR 161
Query: 713 EILFTA 718
E+ TA
Sbjct: 162 EVSLTA 167
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 47.2 bits (113), Expect = 1e-05
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 21/158 (13%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
N TV+ +T AF +++ + +++ G F C G L K ++ ++D+++
Sbjct: 29 NETVIAELTAAFRALDADDSVRAVVLAGAGKAF-CAGAD---LNWMKKMAGYSDDENRAD 84
Query: 646 PLY----------CKIPVIAAMQGHAIGAGWAMGLF--CDYTIFSEESVYQSPYMRYGFT 693
C PVIA + G A G MGL CD + ++ +V+ +R G
Sbjct: 85 ARRLADMLRAIYRCPKPVIARVHGDAYAGG--MGLVAACDIAVAADHAVFCLSEVRLGLI 142
Query: 694 PGAGSTLIFPQR-FGKILSREILFTASEFKGKELKERG 730
P S + R G+ +R TA F E G
Sbjct: 143 PATISPYV--IRAMGERAARRYFLTAERFDAAEALRLG 178
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 47.3 bits (113), Expect = 2e-05
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 24/101 (23%)
Query: 230 GVFVGCAVSDYNKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLV 289
V +GC + + A A + LP V P + ++ AC+S L
Sbjct: 53 DVILGCVLQAGE-QGQNIARQAALA------AGLPGSV--------PAVTVNRACASGLA 97
Query: 290 AIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS 330
A+ A ++ G + + LAGGV KMS + M
Sbjct: 98 AVRLAAQAIASGEADVVLAGGVE---------KMSDAPMGR 129
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 47.1 bits (113), Expect = 2e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P ++ C S L A+A A S+ G + + +AGGV
Sbjct: 76 PATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGV 111
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 46.7 bits (111), Expect = 3e-05
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 570 LIYAKLICNYISK------DLKNS---TVVKGITDAFSYINSSVQYKVIIITGY-ENYFA 619
+IY K + I+K + +N+ VK + AF+ VII+TG F
Sbjct: 67 IIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFC 126
Query: 620 CGG-----TKEG-----------LLKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIG 663
GG K+G +L +Q I R PVIA + G+A+G
Sbjct: 127 SGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRR------------LPKPVIAMVAGYAVG 174
Query: 664 AGWAMGLFCDYTIFSEESVYQSPYMRYG-FTPGAGSTLIFPQRFGKILSREILFTASEFK 722
G + + CD TI ++ +V+ + G F G GS+ I + G+ +RE+ F A +
Sbjct: 175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSS-IMARLVGQKKAREMWFLARFYT 233
Query: 723 GKELKERGISMPVLP 737
E + G+ V+P
Sbjct: 234 ASEALKMGLVNTVVP 248
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEE---SVYQSPYMRYGFTPGAGSTLIFPQRFG 707
+PVIAA++G G G + L D I + + S+ + ++G P T+
Sbjct: 103 VPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIME---AKWGLVPDMAGTVSLRGLVR 159
Query: 708 KILSREILFTASEFKGKELKERG 730
K ++RE+ +TA F +E E G
Sbjct: 160 KDVARELTYTARVFSAEEALELG 182
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 45.4 bits (108), Expect = 5e-05
Identities = 36/176 (20%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDE-KSYC 644
N ++ + AF+ + V + +++ G ++F C G L + + R E +
Sbjct: 27 NDGLIAALRAAFARLPEGV--RAVVLHGEGDHF-CAG-----LDLSELRERDAGEGMHHS 78
Query: 645 MPL--------YCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG-FTPG 695
Y ++PVIAA+ G +G G + + E + + P + G F G
Sbjct: 79 RRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGG 138
Query: 696 AGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
GS + P+ G +++ T + +E + G++ ++P + L +++LA++
Sbjct: 139 GGSVRV-PRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARR 193
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 45.5 bits (108), Expect = 5e-05
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 590 VKGITDAFSYINSSVQYKVIIITGY---ENYFACGGTKEGLLKIQKGISRFTDEKS---- 642
V + DAF+ VI++TG + F GG + K++ + D+
Sbjct: 48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQ----KVRGDSGGYVDDDGIPRL 103
Query: 643 YCMPL-----YCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG-FTPGA 696
+ L PVIA + G+AIG G + + CD TI ++ +++ + G F G
Sbjct: 104 NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGY 163
Query: 697 GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLP 737
GS+ + G+ +REI F ++ +E + G+ V+P
Sbjct: 164 GSSYLARI-VGQKKAREIWFLCRQYDAEEALDMGLVNTVVP 203
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 45.7 bits (108), Expect = 6e-05
Identities = 29/94 (30%), Positives = 41/94 (43%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGK 708
C+ PVIAA+ G IG G + CD SE++ + + T G+ P G
Sbjct: 110 CRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169
Query: 709 ILSREILFTASEFKGKELKERGISMPVLPRKQVL 742
+ E+ T F G E KE G+ V K+ L
Sbjct: 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDL 203
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 45.4 bits (108), Expect = 6e-05
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGK 708
PVIAA+ G A+G G M L D + S + + + R G P A S+ P+ G
Sbjct: 112 SLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVG- 170
Query: 709 ILSR--EILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
L E +++ F +E + G+ V P ++L + LA+++
Sbjct: 171 -LQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREI 215
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 44.6 bits (106), Expect = 1e-04
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 24/177 (13%)
Query: 652 PVIAAMQGHAIGAG----WAMGLFCDYTIFSEESVYQSPYMRYGFTPGA---GSTLIFPQ 704
P IA +QG I G W CD + S+++ + P +R G PG
Sbjct: 120 PTIAQVQGACIAGGLMLAWV----CDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWELGP 174
Query: 705 RFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQK 764
R K E+LFT E G+ V+PR ++ +L+LA++++ + L L K
Sbjct: 175 RKAK----ELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230
Query: 765 KYYSHSL--QKKLSTI---F-LHELT-MHDYTFVNNPSVITNIERYFDKSIKKNNSK 814
+ + +L Q + + F LH+L H+ + + R + K +K
Sbjct: 231 RAVNQTLDAQGFRAALDAVFDLHQLGHAHNAEVGGDRLGGAD-ARGMADARKAAAAK 286
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 44.0 bits (104), Expect = 1e-04
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 25/144 (17%)
Query: 600 INSSVQYKVIIITGYENYFACGGT------------KEGLLKIQKGISRFTDEKSYCMPL 647
IN+ + +V+I+TG F G +E I + I RF+D
Sbjct: 39 INADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREI-RFSD-------- 89
Query: 648 YCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFG 707
KI I+A+ G GA + L D+ S + + + + R G G +
Sbjct: 90 --KI-YISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFL-LKLT 145
Query: 708 KILSREILFTASEFKGKELKERGI 731
EIL EF +E + G+
Sbjct: 146 GQRFYEILVLGGEFTAEEAERWGL 169
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 44.2 bits (105), Expect = 2e-04
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 249 MYNAYALMGESVSILPARVSYFLNLQG-PCLAIDTACSSSLVAIAHACDSLILGNSKIAL 307
+ A G S A ++ +L L G P ++ A +S A+ A ++ G + + L
Sbjct: 41 VVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVL 100
Query: 308 AGGV 311
G
Sbjct: 101 VVGA 104
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 43.2 bits (102), Expect = 3e-04
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
P IA ++G+ IG G + L CD I +E+S + P R G G G +
Sbjct: 108 PTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167
Query: 712 REILFTASEFKGKELKERGI 731
+++ +TA F E G+
Sbjct: 168 KDLFYTARRFDAAEALRIGL 187
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 43.0 bits (102), Expect = 4e-04
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 654 IAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILSRE 713
IA +QG A+G G+ L I + P + + PG G+ +R G L+ E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184
Query: 714 ILFTASEFKGKELKERGI 731
++ + + +EL + G+
Sbjct: 185 LILSGKLYTAEELHDMGL 202
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 42.5 bits (100), Expect = 4e-04
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 650 KIPVIAAMQGHAIGAGWAMGLF--CDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFG 707
KIP +A +QG A G A+GL CD I ++++ + +R G P S + + G
Sbjct: 101 KIPTLAVVQGAAFGG--ALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVV-KAIG 157
Query: 708 KILSREILFTASEFKGKELKERGISMPVLP 737
+ +R TA F G+ +E G+ P
Sbjct: 158 ERAARRYALTAERFDGRRARELGLLAESYP 187
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 42.3 bits (100), Expect = 5e-04
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLF--CDYTIFSEESVYQSPYMRYGFTPGAGSTL--IFPQ 704
C +PVIAA+ G +G G +GL D + S+++ + P + G GA + L + PQ
Sbjct: 93 CAVPVIAAVHGFCLGGG--IGLVGNADVIVASDDATFGLPEVDRG-ALGAATHLQRLVPQ 149
Query: 705 RFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
L R + FTA+ EL G V+PR Q+ +L++A+K+
Sbjct: 150 H----LMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKI 193
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 42.4 bits (100), Expect = 6e-04
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 2 KSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTI-SYDNSKKLKSKNLSINN 60
S ++KS ++ + + + INND D+ SK + + + + +
Sbjct: 83 SSNEIKSFSIKFYLNYYLEIINNDVEDEIELLLFSKNLEYILKKILDKIEKFDEIKGAKK 142
Query: 61 DDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIAI 119
DF KSIN +ID I K SKI++D I + K+ + ++N +K N + I
Sbjct: 143 KDFFKSINIYEIDNFIDKTLSKILDDNIVFQ-DNLEKNIDDKLSNIFNEKLSNLKNEKI 200
Score = 38.2 bits (89), Expect = 0.012
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 1 MKSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINN 60
+ + + DF KSIN +ID I K SKI++D I + K+ + ++N
Sbjct: 128 LDKIEKFDEIKGAKKKDFFKSINIYEIDNFIDKTLSKILDDNIVFQ-DNLEKNIDDKLSN 186
Query: 61 DDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIAII 120
F++ ++N K+ K + ++ I ++ N K L +N + +N D I
Sbjct: 187 -IFNEKLSN---LKNEKISINEKIKSILNEINPDSKFEKKLDLNLIKLEIVKSNSDNDSI 242
Query: 121 GIS 123
+
Sbjct: 243 PLE 245
Score = 34.3 bits (79), Expect = 0.25
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 19 DKSINNDDIDKSIKKNNSKIINDTISYDNS-KKLKSKNLSINNDDFDKSINNDDIDKSIK 77
S N DIDK SK I +I + S ++KS ++ + + + INND D+
Sbjct: 54 SISDNKADIDKENLNKKSKKIKISIIIELSSNEIKSFSIKFYLNYYLEIINNDVEDEIEL 113
Query: 78 KNNSKIINDTI-SYDNSKKLKSKNLSINNDDFDKSINNDDI 117
SK + + + + + DF KSIN +I
Sbjct: 114 LLFSKNLEYILKKILDKIEKFDEIKGAKKKDFFKSINIYEI 154
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 42.0 bits (99), Expect = 0.001
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV-YIINTP---DIHIKMSKSGMLSP 331
P +A+D C+SSL ++ + G + I +AGGV ++ TP + HI+ + + P
Sbjct: 87 PAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDP 146
Query: 332 DGHCYSFDQRANGFVPG 348
Y G+V G
Sbjct: 147 K---YIEYDLTTGYVMG 160
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 41.4 bits (98), Expect = 0.001
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFG 707
+PVIAA+ G A GAG + L CD + + + + +++ G P +G T P+ G
Sbjct: 100 LPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVG 156
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 41.1 bits (97), Expect = 0.001
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P + I+ C S L A+A A ++ G++ I +AGGV
Sbjct: 78 PAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGV 113
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 41.4 bits (98), Expect = 0.002
Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQ--SPYMRYGFTPGAGSTLIFPQRF 706
IPV+AA+ G +G G + L C Y + +++ P ++ G PG+G T P+
Sbjct: 100 LPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLI 159
Query: 707 GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKK 765
G + +++ T + + K+ + G+ V+P +L +++LAKK +++ L ++++
Sbjct: 160 GVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGK-PARRPLPVRER 217
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 40.3 bits (95), Expect = 0.002
Identities = 27/102 (26%), Positives = 53/102 (51%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
P++ A+QG+ + G + L D + ++ + + ++ G P G+TL FPQ G +
Sbjct: 94 PLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNA 153
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
L T EF +E G+ V+P + L +++LA++++
Sbjct: 154 MRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIA 195
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 40.4 bits (95), Expect = 0.002
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 9/159 (5%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQ---KGISRFTDEKS 642
++ ++ +T A + + +V+++TG F C G G ++ Q +R + +
Sbjct: 30 SARMIAELTTAARRLAADAAVRVVVLTGAGKSF-CAGGDLGWMRAQMTADRATRIEEARR 88
Query: 643 YCMPLY----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGS 698
M L P+I +QG A G G + CD I + + R G P S
Sbjct: 89 LAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATIS 148
Query: 699 TLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLP 737
+ R G+ +R + +A F +E G+ V+P
Sbjct: 149 PYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVP 186
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 40.4 bits (95), Expect = 0.002
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 576 ICNYISKDLKNSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGT--KEGLLKIQKG 633
I N S ++ + V+ +T A ++ + +V+++ G GG KE Q
Sbjct: 22 IRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQAS 81
Query: 634 ----ISRFTD--EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPY 687
ISR D + P +PVIA + G +G G + CD I + ++ + P
Sbjct: 82 AEAFISRLRDLCDAVRHFP----VPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPE 137
Query: 688 MRYG 691
+R G
Sbjct: 138 VRVG 141
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 39.9 bits (93), Expect = 0.003
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG-FTPGAGSTLIFPQRFGKI 709
+P++ A++G +G G + + + ++ P + G F P A L P+R G++
Sbjct: 90 VPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLL--PERMGRV 147
Query: 710 LSREILFTASEFKGKELKERGI 731
+ ++L++ G E G+
Sbjct: 148 AAEDLLYSGRSIDGAEGARIGL 169
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 40.0 bits (94), Expect = 0.003
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 627 LLKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSP 686
+L++Q+ I RF MP K VIA + G A G G ++ + CD T+ S E
Sbjct: 124 ILEVQRLI-RF-------MP---K-VVIAVVPGWAAGGGHSLHVVCDLTLASRE------ 165
Query: 687 YMRY--------GFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLP 737
+ R+ F G GS ++ G+ +REI F + +E + G V+P
Sbjct: 166 HARFKQTDADVGSFDGGYGSAY-LARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVP 223
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 40.6 bits (95), Expect = 0.003
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 619 ACGGTKEGLLKIQKGISRFTD-EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIF 677
AC +E Q+G F EKS + P++AA+ G +G G + L C Y I
Sbjct: 83 ACKTAQEVTQLSQEGQEMFERIEKS-------QKPIVAAISGSCLGGGLELALACHYRIA 135
Query: 678 SEES--VYQSPYMRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGI 731
+++ + P + G PGAG T P+ G + +++ T + + K+ GI
Sbjct: 136 TKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGI 191
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 40.0 bits (94), Expect = 0.004
Identities = 36/192 (18%), Positives = 77/192 (40%), Gaps = 45/192 (23%)
Query: 608 VIIITG--------------YENYFACGGTKEGLLKIQ----------------KGISRF 637
VI+++G E + GG K Q + +SRF
Sbjct: 57 VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF 116
Query: 638 TDEKSYCM-PLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTP-- 694
M + P +A + G+ + G + L CD I ++++ + G+ P
Sbjct: 117 VRG---FMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDA-------KIGYPPTR 166
Query: 695 --GAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G +T ++ R G ++ +LFT G + E G+++ +P +++ + +L +++
Sbjct: 167 VWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERI 226
Query: 753 SLLSKKELELQK 764
+ + +L + K
Sbjct: 227 AAVPVNQLAMVK 238
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 40.2 bits (94), Expect = 0.004
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKIL 710
+P +AA+ G A+G G L D+ I + + P + G PG G T+ P+ G
Sbjct: 103 VPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADN 162
Query: 711 SREILFTASEFKGKE 725
+ E + + E + ++
Sbjct: 163 ALEWIASGKENRAED 177
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 39.9 bits (94), Expect = 0.005
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHC 335
P ++ C+S L A+ A + G + + +AGGV MS+ P
Sbjct: 75 PAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVE---------SMSRVPYSVPRSRR 125
Query: 336 YSFDQRAN 343
+
Sbjct: 126 WGVKPGNA 133
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 38.5 bits (90), Expect = 0.007
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 651 IPVIAAMQGHAIGAGWAMGLFCDYTIFSEES--VYQSPYMRYGFTPGAGSTLIFPQRF-- 706
+P IAA+ GHA AG+ + L DY + ++ +Y S + G L P F
Sbjct: 95 MPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSE-VDIG--------LPLPDYFMA 145
Query: 707 ---GKILS----REILFTASEFKGKELKERGI 731
KI S R++L A++ +E E GI
Sbjct: 146 LLRAKIGSPAARRDVLLRAAKLTAEEAVEMGI 177
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 38.7 bits (91), Expect = 0.009
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 29/111 (26%)
Query: 590 VKGITDAFSYINSSVQYKVIIITGY-ENYFACGG-----------TKEGL-----LKIQK 632
VK + DAF+ VII+TG + F GG +G+ L +Q+
Sbjct: 42 VKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQR 101
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVY 683
I C PVIA + G+AIG G + L CD TI ++ +++
Sbjct: 102 LIRT------------CPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIF 140
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 39.1 bits (91), Expect = 0.009
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 647 LYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRF 706
L C PVI + G IG G +G+ D+TI + + + ++G P G+T P
Sbjct: 121 LGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMI 180
Query: 707 GKILSREILFTASEFKGKELKERGISMPVLP 737
G + + + K GI M V+P
Sbjct: 181 GCEQAMVSGTLCEPWSAHKAKRLGIIMDVVP 211
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 39.0 bits (91), Expect = 0.009
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P + I+ CSS L +IA+ + ++LG+S+ +AGG
Sbjct: 82 PAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGA 117
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 38.4 bits (89), Expect = 0.011
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
PVIA + G +G L D I S+++V +PY R GA T ++ R
Sbjct: 114 PVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMW---GAYLTGMWLYRLSLAKV 170
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQK 764
+ T G + E + +P +++ ++A +L+ + +L+ QK
Sbjct: 171 KWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQK 223
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 38.4 bits (90), Expect = 0.013
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSP 331
P ++ C S L AI A +++LG++ +A+ GG MS++ L P
Sbjct: 82 PAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAES---------MSRAPYLLP 128
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 37.3 bits (87), Expect = 0.021
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 643 YCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIF 702
Y MP K+ I+A+ G A G G ++ L DY I + ++ G P G
Sbjct: 95 YTMP---KL-TISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFL 150
Query: 703 PQRFGKILSREILFTASEFKGKELKERGI 731
+R G+ +++I++ + E + G+
Sbjct: 151 QKRVGENKAKQIIWEGKKLSATEALDLGL 179
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 37.3 bits (87), Expect = 0.024
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA--GSTLIFPQRF 706
C P+IAA+ G GAG + + D + + + + R G GA G+ + P+
Sbjct: 112 CPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLA-GADMGACALLPRII 170
Query: 707 GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKKY 766
G+ + E+L+T +E + G ++ +++L + LA++L+
Sbjct: 171 GQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLA---------AGPT 221
Query: 767 YSHSLQKKLSTIFLH-ELTM 785
++H + K + LH E M
Sbjct: 222 FAHGMTKTM----LHQEWDM 237
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 37.5 bits (87), Expect = 0.036
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 12 SINNDDFDKSINNDDIDKSIKKNN--SKIINDTISYDNSKKLKSKNLSINNDD--FDKSI 67
S+ N D +K ++ +DK KK N + + + KK K L I++D F S
Sbjct: 42 SLLNLDINKKLHEK-LDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSK 100
Query: 68 NNDDID--------KSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIAI 119
NN K ++ + I+ + S K K + + D+ K NN +I
Sbjct: 101 NNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSI 160
Query: 120 I 120
Sbjct: 161 S 161
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 36.5 bits (85), Expect = 0.036
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 40/177 (22%)
Query: 593 ITDAFSYINSSVQYKVIIITGYENYF-------ACGGT-----KEGL-----------LK 629
+ + F ++++ + + ++++G +F A G K+GL L+
Sbjct: 38 LPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILR 97
Query: 630 IQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMR 689
+Q I+ D C+ PVIAA+QG IG G + CD S ++ + +
Sbjct: 98 LQAAINAVAD---------CRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVD 148
Query: 690 YGFTPGAGSTLIFPQRFGKILS----REILFTASEFKGKELKERGISMPVLPRKQVL 742
G GS QR +I+ RE+ T + E ++ G+ V L
Sbjct: 149 LGMVADVGSL----QRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADAL 201
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 36.4 bits (84), Expect = 0.042
Identities = 18/80 (22%), Positives = 37/80 (46%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
P +AA+ G+A+GAG + L D+ + + + + + G P + G +
Sbjct: 101 PTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA 160
Query: 712 REILFTASEFKGKELKERGI 731
+E++F+ F +E G+
Sbjct: 161 KELVFSGRFFDAEEALALGL 180
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 37.0 bits (85), Expect = 0.043
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 643 YCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLI- 701
Y + Y K P +A + G +G G + + + + ++ +++ +P GF P AG++
Sbjct: 127 YLLGTYLK-PHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNL 185
Query: 702 --FPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
P R G+ L T + G E+ G++ + +++ +L K L+
Sbjct: 186 SHLPGRLGEYLG----LTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLT 235
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 36.0 bits (84), Expect = 0.047
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESV 682
PVIAA+ G+A+ G + L+CD + E++V
Sbjct: 95 PVIAAVSGYAVAGGLELALWCDLRVAEEDAV 125
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 36.8 bits (85), Expect = 0.049
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 273 LQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINT 316
L P + ++ AC+S +A+ A ++L+ G S IAL GV + T
Sbjct: 109 LYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTT 152
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 36.2 bits (84), Expect = 0.053
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPG-------AGSTLI 701
PVIA ++G G + + + CD I + S + TP L
Sbjct: 95 FPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS-------TFAMTPANLGVPYNLSGILN 147
Query: 702 FPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
F G + +E+ FTAS + GI V+ +++ ++L++A +S
Sbjct: 148 FTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHIS 199
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 35.6 bits (83), Expect = 0.11
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 625 EGLLKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQ 684
+ L +R D +P +P +AA+ G+A+G G L DY + S ++
Sbjct: 86 QWLHFANSIFNRLED-----LP----VPTVAAINGYALGGGCECVLATDYRVASPDARIG 136
Query: 685 SPYMRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKE-LK 727
P + G PG G T+ P+ G + E + + + ++ LK
Sbjct: 137 LPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALK 180
>gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 131
Score = 33.2 bits (76), Expect = 0.15
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 16/108 (14%)
Query: 12 SINNDDFDKSINNDDIDKSIKKNN--SKIINDTISYDNSKKLKSKNLSINNDDFDKSINN 69
SI++D D + K + ++ K+I++ I+ N+K K ++ F++++ N
Sbjct: 5 SISSDQL----VYDLLKKGLDASSYRGKVISNNIANVNTKGYKRHYVT-----FEENLKN 55
Query: 70 DDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDI 117
+ + +K N K IND + + K+ ++ S+ D NN DI
Sbjct: 56 NLDNLELKTTNEKHINDGVEFGQIKEKVDESTSMRTDG-----NNVDI 98
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 34.8 bits (80), Expect = 0.17
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTD---EKS 642
+ +VV + + ++III G F+ GG LK+ D E
Sbjct: 36 SLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGD----LKMFYDGRESDDSCLEVV 91
Query: 643 YCMPLYC------KIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA 696
Y M C K +A + G +G G + + + + +E++V+ +P GF
Sbjct: 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDC 151
Query: 697 GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLS 756
G + I R L + T + GKE+ G++ +P ++KL L
Sbjct: 152 GFSYILS-RLPGHLGEYLALTGARLNGKEMVACGLATHFVP-----------SEKLPELE 199
Query: 757 KKELELQ 763
K+ L L
Sbjct: 200 KRLLNLN 206
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 35.0 bits (80), Expect = 0.18
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 643 YCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIF 702
Y Y K P +A M G +G G + + + + ++++V+ P ++ GF P AG++ +
Sbjct: 132 YLQGTYLK-PNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASY-Y 189
Query: 703 PQRFGKILSREILFTASEFKGKELKERGIS 732
R L + T + G E+ G++
Sbjct: 190 LSRLPGYLGEYLALTGQKLNGVEMIACGLA 219
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 34.6 bits (80), Expect = 0.21
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 254 ALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
A +G ++ LP V + ++ C+S L A+A A D + +G + + +A GV
Sbjct: 73 ARIGALLAGLPNSV--------GGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGV 122
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 33.9 bits (78), Expect = 0.25
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 652 PVIAAMQGHAIGAGWAMGLF--CDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKI 709
PVIAA+ GH G GL CD + ES + R G P S + P+ +
Sbjct: 103 PVIAAIDGHVRAGG--FGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRA 160
Query: 710 LSREILFTASEFKGKELKERGI 731
+R L T +F E G+
Sbjct: 161 AARYYL-TGEKFGAAEAARIGL 181
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 34.4 bits (79), Expect = 0.29
Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 4 KKLKSKNLSINNDDFDKSINNDDIDKSIK-----KNNSKIINDTISYDNSKKLKSKNLSI 58
K K + SI+N D + ++ D K D + ++S K++N+
Sbjct: 367 KFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKNSSFINKTENILT 426
Query: 59 NNDDFD----KSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINN 114
N+ D K+ +I+ + +I ND IS + ++ +++NL I+ +FD + N
Sbjct: 427 NSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNL-IDTGEFD--LEN 483
Query: 115 DDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKN 165
+ N+ + ++ I N + ++ + N
Sbjct: 484 NFSNSFNPENGNKIDENINETFDTSTISANLSENKTNFAQSFNNKDTNLIN 534
Score = 33.6 bits (77), Expect = 0.53
Identities = 32/124 (25%), Positives = 54/124 (43%)
Query: 14 NNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDID 73
N D + ++ S N I++ I+ S NLS N +F +S NN D +
Sbjct: 472 NLIDTGEFDLENNFSNSFNPENGNKIDENINETFDTSTISANLSENKTNFAQSFNNKDTN 531
Query: 74 KSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIAIIGISGQFPKANNVK 133
+ +I DTI+ +NS+K KN + + ++ IN +AI S + +
Sbjct: 532 LINSEIPIDLIKDTITINNSQKNVKKNGNKDYLSVEEVINLIMLAIKFHSQNQVEYKKLV 591
Query: 134 KFWN 137
+ WN
Sbjct: 592 QNWN 595
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 34.2 bits (79), Expect = 0.31
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 283 ACSSSLVAIAHACDSLILGNSKIALAGG 310
AC++S A+A+ +S++ G I +AGG
Sbjct: 90 ACATSFQAVANVAESIMAGTIDIGIAGG 117
>gnl|CDD|112562 pfam03753, HHV6-IE, Human herpesvirus 6 immediate early protein.
The proteins in this family are poorly characterized,
but an investigation has indicated that the immediate
early protein is required the down-regulation of MHC
class I expression in dendritic cells. Human herpesvirus
6 immediate early protein is also referred to as U90.
Length = 993
Score = 34.3 bits (78), Expect = 0.32
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 20 KSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLS-------INNDDFDKSINNDDI 72
+ ++ +KK +K D SKK+KS +L I+++ D+ + I
Sbjct: 648 DKKKDISTNRKVKKRTAKRKTVGYKTDKSKKIKSDSLPTDTNVIVISSESEDEEDGFNII 707
Query: 73 DKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDD 116
KS K K + S S S++ ++ D+DK INN +
Sbjct: 708 KKSQLKKKIKSELKSESSSESDDCTSEDNELHLSDYDKVINNGN 751
Score = 32.0 bits (72), Expect = 1.6
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 KSKKLKSKNLS-------INNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSK 54
KSKK+KS +L I+++ D+ + I KS K K + S S S+
Sbjct: 675 KSKKIKSDSLPTDTNVIVISSESEDEEDGFNIIKKSQLKKKIKSELKSESSSESDDCTSE 734
Query: 55 NLSINNDDFDKSINNDD 71
+ ++ D+DK INN +
Sbjct: 735 DNELHLSDYDKVINNGN 751
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 33.4 bits (77), Expect = 0.38
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 653 VIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
IAA+ G+A+G G L CD I E++ P G P AG T
Sbjct: 98 SIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGT 144
>gnl|CDD|215972 pfam00525, Crystallin, Alpha crystallin A chain, N terminal.
Length = 58
Score = 29.7 bits (67), Expect = 0.74
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 684 QSPYMRYGFTPGAGSTLIFPQRFGKILSREILFTAS 719
Q P+ R P + IF Q FG+ L LF S
Sbjct: 6 QHPWFRRPLFPFFFPSRIFDQFFGEHLLESDLFPFS 41
>gnl|CDD|222988 PHA03105, PHA03105, EEV glycoprotein; Provisional.
Length = 188
Score = 31.9 bits (72), Expect = 0.75
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 4 KKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDF 63
KK K KN+ I + S N+ + + IK +S I S + + + S F
Sbjct: 35 KKKKGKNICIRLNSITYSTNSIE-KEDIKTGSSTISESDWSNSSGEIYANFRSSKKEKSF 93
Query: 64 DKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKN-----LSINNDDFDKSINNDDI 117
++I+ IK +++ D+ + + + N L D+ D S N+D +
Sbjct: 94 KIKNEKENIEVEIKDCDNEFEEDSNNNEENLNWDDNNNGVYDLPPPPDNIDLSSNDDCL 152
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 32.8 bits (75), Expect = 0.78
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 265 ARVSYF---LNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHI 321
AR+S L L P + ID C + L AI AC + G K +AGGV +T
Sbjct: 60 ARLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTS---- 115
Query: 322 KMSKSGMLSPD 332
SP+
Sbjct: 116 PFQNRARFSPE 126
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 31.6 bits (72), Expect = 1.2
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 601 NSSVQYKVIIITGYENYFACGGTKEGLLKIQKG-----------ISRFTDEKSYCMPLYC 649
+ SV++ +I G F+ GG L+++++ I+ +E S+ +
Sbjct: 44 DPSVRFLLINANG--KVFSVGGD---LVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLP 98
Query: 650 KIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
K PVI + G GA M + D+ I S ++ + ++ G P AG
Sbjct: 99 K-PVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAG 145
>gnl|CDD|219327 pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus.
The flagellar hook-associated protein 2 (HAP2 or FliD)
forms the distal end of the flagella, and plays a role
in mucin specific adhesion of the bacteria. This
alignment covers the C-terminal region of this family of
proteins.
Length = 230
Score = 31.5 bits (72), Expect = 1.2
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 10 NLSINNDDFDKSINND---------DIDKSIKKNNSKIINDTISYDNSK-KLKSKNLSIN 59
L ++ D DK++ + D + K + N + +L+
Sbjct: 133 TLELDEDKLDKALKENPDSVEALFGGDDTGLAKRLDDSLKPYTGSGNGILASREDSLNKQ 192
Query: 60 NDDFDKSINNDDIDKSIKK 78
+K I +D+D+ +
Sbjct: 193 IKRLNKQI--EDLDRRLDT 209
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 32.2 bits (74), Expect = 1.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P ++ AC+S A+ A ++ G + + LA GV
Sbjct: 77 PATRVEAACASGGAALRQAYLAVASGEADVVLAAGV 112
>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit
B/C/D; Provisional.
Length = 788
Score = 32.1 bits (73), Expect = 1.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 139 LLIGRNCVSKIPSTRWIIDDF-YDSDKNAIGKTICKKMGSLEDIEIFDPLFFNIS 192
L I R + +P RWI DD+ Y + +K +L+DIE F N++
Sbjct: 666 LRIVRQAAAGMPGGRWISDDYRY---------VLPQKRDTLKDIESLIHHFVNVT 711
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 32.0 bits (73), Expect = 1.5
Identities = 19/196 (9%), Positives = 52/196 (26%), Gaps = 9/196 (4%)
Query: 16 DDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKS--KNLSINNDDFDKSINNDDID 73
+ I+N + + IK + I D+ IN D + + +
Sbjct: 773 SKYLDLIDNLNDAREIKD----KESKAIDLDDIDFELELIGKQEINIDYILELLQTFNDK 828
Query: 74 KSIKKNNSKIINDTISYDNSKKLKS-KNLSINNDDFDKSINNDDIAIIGISGQFPKANNV 132
++ ++I I + + L+ K L + + +
Sbjct: 829 NGAYESLKELIERII-KEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKK 887
Query: 133 KKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDPLFFNIS 192
++ + + + G + +K+ + + + +
Sbjct: 888 EEEFKQFAEEEGLNEEE-LAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAK 946
Query: 193 PSEAEYMDPQQRLFLQ 208
+ R F+Q
Sbjct: 947 EEVEAKLKAFFRRFIQ 962
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 31.7 bits (72), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYII 314
P + ++ CSS L IA A +I G + +AGGV I
Sbjct: 82 PGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESI 120
>gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x)
SDRs. Ketoreductase, a module of the multidomain
polyketide synthase (PKS), has 2 subdomains, each
corresponding to a SDR family monomer. The C-terminal
subdomain catalyzes the NADPH-dependent reduction of the
beta-carbonyl of a polyketide to a hydroxyl group, a
step in the biosynthesis of polyketides, such as
erythromycin. The N-terminal subdomain, an interdomain
linker, is a truncated Rossmann fold which acts to
stabilizes the catalytic subdomain. Unlike typical SDRs,
the isolated domain does not oligomerize but is composed
of 2 subdomains, each resembling an SDR monomer. The
active site resembles that of typical SDRs, except that
the usual positions of the catalytic Asn and Tyr are
swapped, so that the canonical YXXXK motif changes to
YXXXN. Modular PKSs are multifunctional structures in
which the makeup recapitulates that found in (and may
have evolved from) FAS. Polyketide synthesis also
proceeds via the addition of 2-carbon units as in fatty
acid synthesis. The complex SDR NADP-binding motif,
GGXGXXG, is often present, but is not strictly conserved
in each instance of the module. This subfamily includes
both KR domains of the Bacillus subtilis Pks J,-L, and
PksM, and all three KR domains of PksN, components of
the megacomplex bacillaene synthase, which synthesizes
the antibiotic bacillaene. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G
NAD(P)-binding motif. Some atypical SDRs have lost
catalytic activity and/or have an unusual NAD(P)-binding
motif and missing or unusual active site residues.
Reactions catalyzed within the SDR family include
isomerization, decarboxylation, epimerization, C=N bond
reduction, dehydratase activity, dehalogenation,
Enoyl-CoA reduction, and carbonyl-alcohol
oxidoreduction.
Length = 436
Score = 32.0 bits (73), Expect = 1.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 525 FGFSGTNAHIV 535
FG GTNAH++
Sbjct: 1 FGMGGTNAHVI 11
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 31.1 bits (71), Expect = 1.8
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 652 PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILS 711
P IA + G G G++ + CD I ++E+ + + +G PG G + G
Sbjct: 106 PTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH--- 162
Query: 712 REILF---TASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQ 763
R+ L+ T F G++ E G+ +P Q+ + +LA K LL K + L+
Sbjct: 163 RDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAK--LLEKNPVVLR 215
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 31.1 bits (70), Expect = 2.6
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHC 335
+ ++ C SS+ A+ A +++ G++ + L GGV + H+ M +
Sbjct: 81 AAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMG----HVPMMHG--VDFHPGM 134
Query: 336 YSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCI---IKGWGVNQDGK 383
+A G + G+ ML K+ ++ D + + Q+GK
Sbjct: 135 SLHVAKAAGMM---GLTAEMLGKMHGISREQQDAFAARSHARAHAATQEGK 182
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 30.9 bits (71), Expect = 2.8
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLI-LGNSKIALAGGV 311
P L I+ C S L A+A A I G++ I +AGG
Sbjct: 80 PALTINKVCGSGLKAVALA-AQAIRAGDADIVVAGGQ 115
>gnl|CDD|214348 CHL00048, rps3, ribosomal protein S3.
Length = 214
Score = 30.6 bits (70), Expect = 2.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 564 KNLSQLLIYAKLICNYISKDLKNSTVVKGITDAFSYINSSV-QYKVIIITGYENYFACGG 622
KN S+ L K I + I ++ + +GI A I + +VII TG+
Sbjct: 27 KNYSEGLQEDKKIRDCIKNYVQKNIKYEGI--ARIEIQRKIDLIQVIIYTGFPKLLI-ER 83
Query: 623 TKEGLLKIQKGISR 636
G+ ++Q + +
Sbjct: 84 KGRGIEELQINLQK 97
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 30.8 bits (69), Expect = 3.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG 310
P I+ C S L ++A A +S++ G+++I +AGG
Sbjct: 81 PGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGG 115
>gnl|CDD|129778 TIGR00695, uxuA, mannonate dehydratase. This Fe2+-requiring enzyme
plays a role in D-glucuronate catabolism in Escherichia
coli. Mannonate dehydratase converts D-mannonate to
2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is
found in a glucuronate utilization operon in Bacillus
stearothermophilus T-6 [Energy metabolism, Sugars].
Length = 394
Score = 30.7 bits (69), Expect = 3.2
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 510 WDIKNKKKRMAAINSFGFSGTNAHIV-LMEKIK-NNENIDKFINNLPIFMVFPLSAKNLS 567
W+ + +KR I S G + V + E IK N ++I N + + +NL+
Sbjct: 40 WEKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIEN------YKQTLRNLA 93
Query: 568 QLLIYAKLIC 577
Q I K +C
Sbjct: 94 QCGI--KTVC 101
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 30.3 bits (69), Expect = 3.4
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 22/82 (26%)
Query: 607 KVIIITGYENYFACG--------GTKEGLLKIQKGISRFTDEKSYCMPLYCKIPVIAAMQ 658
V++ITG F+ G G + + + G + + + K PVI A
Sbjct: 46 AVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGS-----TLARRLLSHPK-PVIVACT 99
Query: 659 GHAIGAGWAMGLF----CDYTI 676
GHAI A G F DY I
Sbjct: 100 GHAI----AKGAFLLLSADYRI 117
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin
depolymerizing factors. Actin depolymerization
factor/cofilin-like domains (ADF domains) are present in
a family of essential eukaryotic actin regulatory
proteins. These proteins enhance the turnover rate of
actin, and interact with actin monomers (G-actin) as
well as actin filaments (F-actin), typically with a
preference for ADP-G-actin subunits. The basic function
of cofilin is to promote disassembly of aged actin
filaments. Vertebrates have three isoforms of cofilin:
cofilin-1 (Cfl1, non-muscle cofilin), cofilin-2 (muscle
cofilin), and ADF (destrin). When bound to actin
monomers, cofilins inhibit their spontaneous exchange of
nucleotides. The cooperative binding to (aged)
ADP-F-actin induces a local change in the actin filament
structure and further promotes aging.
Length = 133
Score = 29.4 bits (67), Expect = 3.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 503 INTKCKS--WDIKNKKKRMAAINSFGFSGTNAHIVLMEKIKNNENIDKFINNLP 554
++ +C + ++K KKK I F S IV+ + + + + D F+ LP
Sbjct: 5 VSDECITAFNELKLKKKHKYII--FKISDDKKEIVVEKVGERDASYDDFLEKLP 56
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 30.7 bits (69), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 271 LNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG 310
+N+ ++ AC++S + + +S++ G I +AGG
Sbjct: 80 MNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGG 119
>gnl|CDD|215830 pfam00267, Porin_1, Gram-negative porin.
Length = 334
Score = 30.4 bits (69), Expect = 3.9
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 43 ISYDNSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLS 102
+SY SK +ND + KN S ++ I NL
Sbjct: 264 VSYAQSKGKDLNGAYGDNDLVKYVDVGATYYFN--KNMSAYVDYKI-----------NLL 310
Query: 103 INNDDFDKSINNDDIAIIGISGQF 126
DDF IN DD +G+ QF
Sbjct: 311 DKGDDFAAGINTDDAVAVGLVYQF 334
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 30.6 bits (70), Expect = 4.2
Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 6 LKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDK 65
LK + + + + +NN+ +KK + + K+ + I DF+
Sbjct: 114 LKKQKVEVEGNKLIIKVNNEIERDHLKKKHLPKLI--------KQYEKFGFGILKIDFEI 165
Query: 66 SINNDDIDKSIKKN---NSKIINDTISYDNSKKLKSKNLSINNDDFD------KSINNDD 116
+ ++++K + + K+ + + + + K S N D + K I+ ++
Sbjct: 166 DDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Query: 117 I 117
I
Sbjct: 226 I 226
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 30.4 bits (69), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG 310
C ++ C+S + A+ A S+ LG + + +AGG
Sbjct: 79 ICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGG 113
>gnl|CDD|236270 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 613
Score = 30.4 bits (69), Expect = 4.6
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 36 SKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDID----KSIKKNNSKIINDTISYD 91
I +D +S + + L N +I N FD + + D K+I + +ND +
Sbjct: 347 ESIESDPLSLKSDEALVDTNYNIQNGSFDLVVYDTDGKEVARKTINIDVITTMNDIVQQI 406
Query: 92 NSKKLKSKNLSINN---DDFDKSINND 115
N+ + + + NN D F S NND
Sbjct: 407 NANTDDNNDNNANNDVDDYFTASFNND 433
>gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA
polymerase I (RNAP I), C-terminal domain. RNA
polymerase I (RNAP I) is a multi-subunit protein complex
responsible for the synthesis of rRNA precursor. It
consists of at least 14 different subunits, and the
largest one is homologous to subunit Rpb1 of yeast RNAP
II and subunit beta' of bacterial RNAP. Rpa1 is also
known as Rpa190 in yeast. Structure studies suggest that
different RNAP complexes share a similar crab-claw-shape
structure. The C-terminal domain of Rpb1, the largest
subunit of RNAP II, makes up part of the foot and jaw
structures of RNAP II. The similarity between this
domain and the C-terminal domain of Rpb1, its
counterpart in RNAP II, suggests a similar functional
and structural role.
Length = 309
Score = 30.2 bits (69), Expect = 4.7
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 712 REILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKKYYSHSL 771
REIL TAS K +K +++P+ K + L K+LS ++ ++ +K +
Sbjct: 51 REILMTAS----KNIKTPSMTLPLKNGKSAE-RAETLKKRLSRVTLS--DVVEKVEVTEI 103
Query: 772 QKKLSTIFLHEL 783
K + +F L
Sbjct: 104 LKTIERVFKKLL 115
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.6 bits (69), Expect = 4.8
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 18 FDKSINNDDID---KSIKKNNSKIINDTISYDNS-----KKLKSKNLSINNDDFDKSINN 69
DK N+ +I+ KSIK N I I + K +++ + IN+ +F+ SI+
Sbjct: 758 TDKLTNDKNINRQIKSIKIKNLSYIPIDIKVGGNTIDTIKGGETEVVQINSSEFNFSISC 817
Query: 70 DDIDKS---IKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINN 114
DI S I K +++ + K K NL D F K + N
Sbjct: 818 LDISFSTTLISKAK---LDNLKTLVPEKYNKETNLLTVQDKFVKLVKN 862
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 30.2 bits (68), Expect = 5.3
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 3/131 (2%)
Query: 7 KSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKS 66
++ ++ ++++N + + + TI K + INN
Sbjct: 373 QASSVKNKQAQSEENLNESPKTPIAVTGDPHLKDPTIIAGKKLMNKLTSEKINNPVKVVK 432
Query: 67 INNDDIDKSIKKNNSKIINDTISYDNSKKLKSK---NLSINNDDFDKSINNDDIAIIGIS 123
++ +KS KK + +++ + SK+L+ K + +F N + +
Sbjct: 433 VSKYKGNKSEKKRDINVLDTIFASPVSKELRKKVGKSKQTKLKNFKPVPNKSKKQLANNN 492
Query: 124 GQFPKANNVKK 134
Q K+ V K
Sbjct: 493 SQNIKSKKVVK 503
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 29.9 bits (68), Expect = 5.5
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHC 335
P + I+ C+S L A+ A + G + +AGGV MS+ M S DG
Sbjct: 83 PGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVE---------SMSRVPMGS-DGGA 132
Query: 336 YSFDQRAN---GFVPGEGVG 352
++ D N FVP +G+
Sbjct: 133 WAMDPSTNFPTYFVP-QGIS 151
>gnl|CDD|241351 cd13197, FERM_C_CCM1, Cerebral cavernous malformation 1 FERM domain
C-lobe. CCM1 (also called KRIT-1/Krev interaction
trapped 1;ankyrin repeat-containing protein Krit1; CAM),
a Rap1-binding protein, is expressed in endothelial
cells where it is present in cell-cell junctions and
associated with junctional proteins. Together with
CCM2/MGC4607 and CCM3/PDCD10, KRIT1 constitutes a set of
proteins, mutations of which are found in cerebral
cavernous malformations which are characterized by
cerebral hemorrhages and vascular malformations in the
central nervous system. KRIT-1 possesses four ankyrin
repeats, a FERM domain, and multiple NPXY sequences, one
of which is essential for integrin cytoplasmic
domain-associated protein-1alpha (ICAP1alpha) binding
and all of which mediate binding of CCM2. KRIT-1
localization is mediated by its FERM domain. The FERM
domain has a cloverleaf tripart structure (FERM_N,
FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe,
C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain
is part of the PH domain family. The FERM domain is
found in the cytoskeletal-associated proteins such as
ezrin, moesin, radixin, 4.1R, and merlin. These proteins
provide a link between the membrane and cytoskeleton and
are involved in signal transduction pathways. The FERM
domain is also found in protein tyrosine phosphatases
(PTPs) , the tyrosine kinases FAK and JAK, in addition
to other proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 122
Score = 28.7 bits (64), Expect = 6.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 199 MDPQQRLFLQNCW 211
M QR+FLQNCW
Sbjct: 5 MHHLQRMFLQNCW 17
>gnl|CDD|180387 PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.
Length = 434
Score = 29.7 bits (67), Expect = 6.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 91 DNSKKLKSKNLSINNDDFDKSINNDDIAIIGISGQFPKAN 130
D + +K ++ I+ +DF K +N + +A+IG SG A+
Sbjct: 122 DKLESIKGFHVEISQEDFIKLVNENKVAVIGQSGNLTPAD 161
>gnl|CDD|217015 pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family
consists of immunoglobulin A1 protease proteins. The
immunoglobulin A1 protease cleaves immunoglobulin IgA
and is found in pathogenic bacteria such as Neisseria
gonorrhoeae. Not all of the members of this family are
IgA proteases, espP from E. coli O157:H7 cleaves human
coagulation factor V and hbp is a hemoglobin protease
from E. coli EB1.
Length = 758
Score = 30.2 bits (68), Expect = 6.6
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 32 KKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYD 91
+ ++ + K N ++ DF + D D ++K+ S YD
Sbjct: 217 NQKKKWVLLGVLDGGAGYGGKGNNWNVTKKDFLGQVLQKDTDATVKQRYSGNGPLNWHYD 276
Query: 92 NSK---KL--KSKNLSINNDDFDKSINNDDIAIIGISGQFPKANNV 132
+ KL S + ++ + + ++ G +G N++
Sbjct: 277 ATTGTGKLTQGSTTVDMHGNKGNDLNAGKNLIFTGQNGTIVLKNSI 322
>gnl|CDD|165164 PHA02813, PHA02813, hypothetical protein; Provisional.
Length = 354
Score = 29.5 bits (66), Expect = 7.0
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 23 NNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDID--KSIKKNN 80
N DD+ I + + II D + ++ K + K LS + D+ + +D D K + K
Sbjct: 260 NFDDMCMEIAFSYNDIIFDYLKNEDGKNIAWKALSKSCDEMWYPKSKNDFDFLKDLVKYV 319
Query: 81 SKIINDTISY 90
+ + D I Y
Sbjct: 320 NNNLKDKIDY 329
>gnl|CDD|224264 COG1345, FliD, Flagellar capping protein [Cell motility and
secretion].
Length = 483
Score = 29.7 bits (67), Expect = 7.6
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 15/123 (12%)
Query: 2 KSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKI--INDTISY---DNSKKLKSKNL 56
K LS++ D + I + + N + +N SY D ++ +
Sbjct: 268 KKTTEAPATLSVSQD-NEAIKE--AIKEFVDAYNELVDTLNSLTSYTLTDAQEEAMTAKN 324
Query: 57 SINNDDFD-KSINN---DDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSI 112
I D +S+ + + S+ K + + + L I+ ++
Sbjct: 325 GILAGDSTLRSLKSQLRSVLSNSVSDGAFKTLAE---IGITTDSLDGTLEIDEAKLKAAL 381
Query: 113 NND 115
N D
Sbjct: 382 NED 384
>gnl|CDD|215912 pfam00423, HN, Haemagglutinin-neuraminidase.
Length = 545
Score = 29.2 bits (66), Expect = 9.5
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 38 IINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSK--IINDTISY----- 90
I + TIS + + + LSI D + DI I + K II D +
Sbjct: 22 IHSATISTGEIQNILNTLLSITE-SIDHQV--KDISSLISELTPKFKIIGDEVGLTIPQK 78
Query: 91 --DNSKKLKSKNLSINNDDFDKSINNDDIAI 119
D + K + N D + N AI
Sbjct: 79 LSDLGSFISDK-IKFLNPDITQQCRNTVTAI 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,991,443
Number of extensions: 4240667
Number of successful extensions: 5103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4768
Number of HSP's successfully gapped: 362
Length of query: 829
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 724
Effective length of database: 6,280,432
Effective search space: 4547032768
Effective search space used: 4547032768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)